Multiple sequence alignment - TraesCS6A01G283900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G283900 chr6A 100.000 2252 0 0 483 2734 515035431 515033180 0.000000e+00 4159
1 TraesCS6A01G283900 chr6A 95.572 813 33 3 1923 2734 60158543 60159353 0.000000e+00 1299
2 TraesCS6A01G283900 chr6A 93.688 301 9 1 483 773 60737172 60736872 2.500000e-120 442
3 TraesCS6A01G283900 chr6A 95.620 274 12 0 497 770 515048017 515047744 8.990000e-120 440
4 TraesCS6A01G283900 chr6A 93.624 298 9 1 483 770 60742270 60741973 1.160000e-118 436
5 TraesCS6A01G283900 chr6A 85.523 373 42 7 1348 1720 515658081 515657721 1.990000e-101 379
6 TraesCS6A01G283900 chr6A 86.709 316 34 4 995 1302 515665722 515665407 7.250000e-91 344
7 TraesCS6A01G283900 chr6A 100.000 132 0 0 1 132 515035913 515035782 7.560000e-61 244
8 TraesCS6A01G283900 chr6A 97.727 132 3 0 1 132 212919056 212919187 7.620000e-56 228
9 TraesCS6A01G283900 chr6A 97.727 132 3 0 1 132 458816150 458816281 7.620000e-56 228
10 TraesCS6A01G283900 chr6A 97.727 132 3 0 1 132 484187178 484187309 7.620000e-56 228
11 TraesCS6A01G283900 chr6B 93.346 1082 49 9 785 1852 558816143 558817215 0.000000e+00 1578
12 TraesCS6A01G283900 chr6B 93.161 1082 51 9 785 1852 558733548 558734620 0.000000e+00 1567
13 TraesCS6A01G283900 chr6B 88.199 322 29 5 989 1302 561146400 561146080 2.570000e-100 375
14 TraesCS6A01G283900 chr6B 82.768 354 46 6 1354 1707 561005292 561004954 4.420000e-78 302
15 TraesCS6A01G283900 chr6B 96.250 80 3 0 1852 1931 558910985 558911064 6.140000e-27 132
16 TraesCS6A01G283900 chrUn 95.956 816 31 2 1919 2734 81780843 81781656 0.000000e+00 1323
17 TraesCS6A01G283900 chrUn 93.026 717 32 6 1130 1834 410292949 410293659 0.000000e+00 1031
18 TraesCS6A01G283900 chrUn 92.100 519 16 6 785 1294 459912144 459912646 0.000000e+00 708
19 TraesCS6A01G283900 chrUn 88.926 298 22 2 484 770 48989123 48988826 9.310000e-95 357
20 TraesCS6A01G283900 chrUn 92.473 186 9 3 785 968 466368406 466368224 7.510000e-66 261
21 TraesCS6A01G283900 chr3A 96.144 804 29 2 1932 2734 181139473 181138671 0.000000e+00 1312
22 TraesCS6A01G283900 chr7A 96.245 799 29 1 1937 2734 42970005 42970803 0.000000e+00 1308
23 TraesCS6A01G283900 chr7A 95.432 810 33 4 1926 2734 130300864 130300058 0.000000e+00 1288
24 TraesCS6A01G283900 chr4A 95.797 809 32 2 1927 2734 520123924 520123117 0.000000e+00 1304
25 TraesCS6A01G283900 chr4A 98.485 132 2 0 1 132 394904901 394904770 1.640000e-57 233
26 TraesCS6A01G283900 chr2A 96.000 800 31 1 1933 2731 421222852 421223651 0.000000e+00 1299
27 TraesCS6A01G283900 chr2A 98.485 132 2 0 1 132 575080021 575080152 1.640000e-57 233
28 TraesCS6A01G283900 chr1A 95.320 812 36 2 1923 2734 317819008 317819817 0.000000e+00 1288
29 TraesCS6A01G283900 chr1A 95.314 811 37 1 1925 2734 14150698 14151508 0.000000e+00 1286
30 TraesCS6A01G283900 chr1A 97.727 132 3 0 1 132 254880936 254881067 7.620000e-56 228
31 TraesCS6A01G283900 chr1A 97.727 132 3 0 1 132 254887489 254887620 7.620000e-56 228
32 TraesCS6A01G283900 chr6D 91.987 624 34 6 1314 1931 372950715 372950102 0.000000e+00 861
33 TraesCS6A01G283900 chr6D 95.789 475 19 1 770 1243 372951207 372950733 0.000000e+00 765
34 TraesCS6A01G283900 chr6D 82.227 844 101 33 908 1720 373418603 373417778 0.000000e+00 682
35 TraesCS6A01G283900 chr6D 80.000 895 141 31 851 1735 373392517 373391651 6.430000e-176 627
36 TraesCS6A01G283900 chr6D 88.787 437 31 4 825 1259 373049531 373049111 1.120000e-143 520
37 TraesCS6A01G283900 chr6D 85.047 321 37 8 1293 1602 373279820 373279500 1.580000e-82 316
38 TraesCS6A01G283900 chr6D 90.551 127 12 0 1628 1754 373045528 373045402 4.680000e-38 169
39 TraesCS6A01G283900 chr6D 96.629 89 3 0 1201 1289 373280293 373280205 6.100000e-32 148
40 TraesCS6A01G283900 chr2D 90.728 302 17 2 484 774 419479195 419479496 2.550000e-105 392
41 TraesCS6A01G283900 chr2D 90.940 298 16 2 484 770 419474162 419474459 9.180000e-105 390
42 TraesCS6A01G283900 chr5A 98.485 132 2 0 1 132 57708190 57708321 1.640000e-57 233
43 TraesCS6A01G283900 chr5A 98.485 132 2 0 1 132 450054310 450054179 1.640000e-57 233
44 TraesCS6A01G283900 chr7D 96.154 78 2 1 575 651 92441480 92441557 2.860000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G283900 chr6A 515033180 515035913 2733 True 2201.5 4159 100.000 1 2734 2 chr6A.!!$R6 2733
1 TraesCS6A01G283900 chr6A 60158543 60159353 810 False 1299.0 1299 95.572 1923 2734 1 chr6A.!!$F1 811
2 TraesCS6A01G283900 chr6B 558816143 558817215 1072 False 1578.0 1578 93.346 785 1852 1 chr6B.!!$F2 1067
3 TraesCS6A01G283900 chr6B 558733548 558734620 1072 False 1567.0 1567 93.161 785 1852 1 chr6B.!!$F1 1067
4 TraesCS6A01G283900 chrUn 81780843 81781656 813 False 1323.0 1323 95.956 1919 2734 1 chrUn.!!$F1 815
5 TraesCS6A01G283900 chrUn 410292949 410293659 710 False 1031.0 1031 93.026 1130 1834 1 chrUn.!!$F2 704
6 TraesCS6A01G283900 chrUn 459912144 459912646 502 False 708.0 708 92.100 785 1294 1 chrUn.!!$F3 509
7 TraesCS6A01G283900 chr3A 181138671 181139473 802 True 1312.0 1312 96.144 1932 2734 1 chr3A.!!$R1 802
8 TraesCS6A01G283900 chr7A 42970005 42970803 798 False 1308.0 1308 96.245 1937 2734 1 chr7A.!!$F1 797
9 TraesCS6A01G283900 chr7A 130300058 130300864 806 True 1288.0 1288 95.432 1926 2734 1 chr7A.!!$R1 808
10 TraesCS6A01G283900 chr4A 520123117 520123924 807 True 1304.0 1304 95.797 1927 2734 1 chr4A.!!$R2 807
11 TraesCS6A01G283900 chr2A 421222852 421223651 799 False 1299.0 1299 96.000 1933 2731 1 chr2A.!!$F1 798
12 TraesCS6A01G283900 chr1A 317819008 317819817 809 False 1288.0 1288 95.320 1923 2734 1 chr1A.!!$F4 811
13 TraesCS6A01G283900 chr1A 14150698 14151508 810 False 1286.0 1286 95.314 1925 2734 1 chr1A.!!$F1 809
14 TraesCS6A01G283900 chr6D 372950102 372951207 1105 True 813.0 861 93.888 770 1931 2 chr6D.!!$R3 1161
15 TraesCS6A01G283900 chr6D 373417778 373418603 825 True 682.0 682 82.227 908 1720 1 chr6D.!!$R2 812
16 TraesCS6A01G283900 chr6D 373391651 373392517 866 True 627.0 627 80.000 851 1735 1 chr6D.!!$R1 884
17 TraesCS6A01G283900 chr6D 373045402 373049531 4129 True 344.5 520 89.669 825 1754 2 chr6D.!!$R4 929
18 TraesCS6A01G283900 chr6D 373279500 373280293 793 True 232.0 316 90.838 1201 1602 2 chr6D.!!$R5 401

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 754 0.102481 CCGTCATCCTCTGTAACCGG 59.898 60.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2231 6024 0.739813 GGCAACCGTAGTTCAGCGAT 60.74 55.0 0.0 0.0 32.45 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.814023 TTGATCTCTCCGCCTCCTC 58.186 57.895 0.00 0.00 0.00 3.71
19 20 1.103987 TTGATCTCTCCGCCTCCTCG 61.104 60.000 0.00 0.00 0.00 4.63
20 21 2.909965 ATCTCTCCGCCTCCTCGC 60.910 66.667 0.00 0.00 0.00 5.03
33 34 4.218578 CTCGCGAGCCAGCCTGAT 62.219 66.667 25.07 0.00 0.00 2.90
34 35 4.519437 TCGCGAGCCAGCCTGATG 62.519 66.667 3.71 0.00 0.00 3.07
35 36 4.519437 CGCGAGCCAGCCTGATGA 62.519 66.667 0.00 0.00 0.00 2.92
36 37 2.588314 GCGAGCCAGCCTGATGAG 60.588 66.667 0.00 0.00 0.00 2.90
37 38 2.108566 CGAGCCAGCCTGATGAGG 59.891 66.667 0.00 0.00 43.19 3.86
53 54 4.021925 GGCCGTGCCTGAGGAAGT 62.022 66.667 0.65 0.00 46.69 3.01
54 55 2.032681 GCCGTGCCTGAGGAAGTT 59.967 61.111 0.65 0.00 0.00 2.66
55 56 2.035442 GCCGTGCCTGAGGAAGTTC 61.035 63.158 0.65 0.00 0.00 3.01
56 57 1.376037 CCGTGCCTGAGGAAGTTCC 60.376 63.158 14.54 14.54 36.58 3.62
57 58 1.738099 CGTGCCTGAGGAAGTTCCG 60.738 63.158 16.31 3.26 42.75 4.30
58 59 1.371558 GTGCCTGAGGAAGTTCCGT 59.628 57.895 16.31 4.97 42.75 4.69
59 60 0.951040 GTGCCTGAGGAAGTTCCGTG 60.951 60.000 16.31 10.02 42.75 4.94
60 61 1.371558 GCCTGAGGAAGTTCCGTGT 59.628 57.895 16.31 0.00 42.75 4.49
61 62 0.670854 GCCTGAGGAAGTTCCGTGTC 60.671 60.000 16.31 9.27 42.75 3.67
62 63 0.388649 CCTGAGGAAGTTCCGTGTCG 60.389 60.000 16.31 4.78 42.75 4.35
63 64 0.314302 CTGAGGAAGTTCCGTGTCGT 59.686 55.000 16.31 0.00 42.75 4.34
64 65 0.313043 TGAGGAAGTTCCGTGTCGTC 59.687 55.000 16.31 7.84 42.75 4.20
65 66 0.388263 GAGGAAGTTCCGTGTCGTCC 60.388 60.000 16.31 0.00 42.75 4.79
66 67 1.731969 GGAAGTTCCGTGTCGTCCG 60.732 63.158 6.06 0.00 0.00 4.79
67 68 2.355481 AAGTTCCGTGTCGTCCGC 60.355 61.111 0.00 0.00 0.00 5.54
68 69 3.853597 AAGTTCCGTGTCGTCCGCC 62.854 63.158 0.00 0.00 0.00 6.13
101 102 4.148825 CCTCGCGAGGGTCTTGGG 62.149 72.222 41.47 19.14 44.87 4.12
102 103 3.382832 CTCGCGAGGGTCTTGGGT 61.383 66.667 28.40 0.00 0.00 4.51
103 104 3.358076 CTCGCGAGGGTCTTGGGTC 62.358 68.421 28.40 0.00 0.00 4.46
104 105 3.382832 CGCGAGGGTCTTGGGTCT 61.383 66.667 0.00 0.00 0.00 3.85
105 106 2.266055 GCGAGGGTCTTGGGTCTG 59.734 66.667 0.00 0.00 0.00 3.51
106 107 2.584391 GCGAGGGTCTTGGGTCTGT 61.584 63.158 0.00 0.00 0.00 3.41
107 108 1.293498 CGAGGGTCTTGGGTCTGTG 59.707 63.158 0.00 0.00 0.00 3.66
108 109 1.472662 CGAGGGTCTTGGGTCTGTGT 61.473 60.000 0.00 0.00 0.00 3.72
109 110 0.765510 GAGGGTCTTGGGTCTGTGTT 59.234 55.000 0.00 0.00 0.00 3.32
110 111 0.474184 AGGGTCTTGGGTCTGTGTTG 59.526 55.000 0.00 0.00 0.00 3.33
111 112 0.472471 GGGTCTTGGGTCTGTGTTGA 59.528 55.000 0.00 0.00 0.00 3.18
112 113 1.073923 GGGTCTTGGGTCTGTGTTGAT 59.926 52.381 0.00 0.00 0.00 2.57
113 114 2.154462 GGTCTTGGGTCTGTGTTGATG 58.846 52.381 0.00 0.00 0.00 3.07
114 115 2.224523 GGTCTTGGGTCTGTGTTGATGA 60.225 50.000 0.00 0.00 0.00 2.92
115 116 3.476552 GTCTTGGGTCTGTGTTGATGAA 58.523 45.455 0.00 0.00 0.00 2.57
116 117 3.499918 GTCTTGGGTCTGTGTTGATGAAG 59.500 47.826 0.00 0.00 0.00 3.02
117 118 3.390967 TCTTGGGTCTGTGTTGATGAAGA 59.609 43.478 0.00 0.00 0.00 2.87
118 119 4.042062 TCTTGGGTCTGTGTTGATGAAGAT 59.958 41.667 0.00 0.00 0.00 2.40
119 120 3.678289 TGGGTCTGTGTTGATGAAGATG 58.322 45.455 0.00 0.00 0.00 2.90
120 121 3.012518 GGGTCTGTGTTGATGAAGATGG 58.987 50.000 0.00 0.00 0.00 3.51
121 122 3.012518 GGTCTGTGTTGATGAAGATGGG 58.987 50.000 0.00 0.00 0.00 4.00
122 123 2.421424 GTCTGTGTTGATGAAGATGGGC 59.579 50.000 0.00 0.00 0.00 5.36
123 124 1.747355 CTGTGTTGATGAAGATGGGCC 59.253 52.381 0.00 0.00 0.00 5.80
124 125 1.075212 TGTGTTGATGAAGATGGGCCA 59.925 47.619 9.61 9.61 0.00 5.36
125 126 2.291735 TGTGTTGATGAAGATGGGCCAT 60.292 45.455 21.39 21.39 0.00 4.40
126 127 2.100252 GTGTTGATGAAGATGGGCCATG 59.900 50.000 26.77 0.00 0.00 3.66
127 128 2.025131 TGTTGATGAAGATGGGCCATGA 60.025 45.455 26.77 5.10 0.00 3.07
128 129 3.228453 GTTGATGAAGATGGGCCATGAT 58.772 45.455 26.77 12.45 0.00 2.45
129 130 2.871453 TGATGAAGATGGGCCATGATG 58.129 47.619 26.77 0.00 0.00 3.07
130 131 2.168496 GATGAAGATGGGCCATGATGG 58.832 52.381 26.77 7.21 41.55 3.51
131 132 0.186630 TGAAGATGGGCCATGATGGG 59.813 55.000 26.77 0.00 38.19 4.00
507 508 7.651027 TCTCTCTATTGATGAACATCACTCA 57.349 36.000 15.68 3.97 46.49 3.41
508 509 7.714703 TCTCTCTATTGATGAACATCACTCAG 58.285 38.462 15.68 12.66 46.49 3.35
509 510 7.559170 TCTCTCTATTGATGAACATCACTCAGA 59.441 37.037 15.68 15.35 46.49 3.27
510 511 8.247666 TCTCTATTGATGAACATCACTCAGAT 57.752 34.615 15.68 9.66 46.49 2.90
511 512 8.358895 TCTCTATTGATGAACATCACTCAGATC 58.641 37.037 15.68 0.00 46.49 2.75
512 513 8.247666 TCTATTGATGAACATCACTCAGATCT 57.752 34.615 15.68 0.00 46.49 2.75
513 514 8.142551 TCTATTGATGAACATCACTCAGATCTG 58.857 37.037 17.07 17.07 46.49 2.90
514 515 5.672421 TGATGAACATCACTCAGATCTGT 57.328 39.130 21.92 0.90 42.42 3.41
515 516 6.780457 TGATGAACATCACTCAGATCTGTA 57.220 37.500 21.92 8.43 42.42 2.74
516 517 6.803642 TGATGAACATCACTCAGATCTGTAG 58.196 40.000 21.92 18.53 42.42 2.74
517 518 5.003692 TGAACATCACTCAGATCTGTAGC 57.996 43.478 21.92 5.13 33.72 3.58
518 519 4.708909 TGAACATCACTCAGATCTGTAGCT 59.291 41.667 21.92 0.00 33.72 3.32
519 520 4.916983 ACATCACTCAGATCTGTAGCTC 57.083 45.455 21.92 0.00 33.72 4.09
520 521 4.535781 ACATCACTCAGATCTGTAGCTCT 58.464 43.478 21.92 2.10 33.72 4.09
521 522 5.689835 ACATCACTCAGATCTGTAGCTCTA 58.310 41.667 21.92 0.19 33.72 2.43
522 523 5.764686 ACATCACTCAGATCTGTAGCTCTAG 59.235 44.000 21.92 12.43 33.72 2.43
523 524 5.366482 TCACTCAGATCTGTAGCTCTAGT 57.634 43.478 21.92 13.06 0.00 2.57
524 525 5.750524 TCACTCAGATCTGTAGCTCTAGTT 58.249 41.667 21.92 0.00 0.00 2.24
525 526 6.184068 TCACTCAGATCTGTAGCTCTAGTTT 58.816 40.000 21.92 0.00 0.00 2.66
526 527 6.094742 TCACTCAGATCTGTAGCTCTAGTTTG 59.905 42.308 21.92 9.63 0.00 2.93
527 528 6.094742 CACTCAGATCTGTAGCTCTAGTTTGA 59.905 42.308 21.92 0.00 0.00 2.69
528 529 6.661377 ACTCAGATCTGTAGCTCTAGTTTGAA 59.339 38.462 21.92 0.00 0.00 2.69
529 530 7.177568 ACTCAGATCTGTAGCTCTAGTTTGAAA 59.822 37.037 21.92 0.00 0.00 2.69
530 531 8.072321 TCAGATCTGTAGCTCTAGTTTGAAAT 57.928 34.615 21.92 0.00 0.00 2.17
531 532 8.535335 TCAGATCTGTAGCTCTAGTTTGAAATT 58.465 33.333 21.92 0.00 0.00 1.82
532 533 9.809096 CAGATCTGTAGCTCTAGTTTGAAATTA 57.191 33.333 14.95 0.00 0.00 1.40
533 534 9.810545 AGATCTGTAGCTCTAGTTTGAAATTAC 57.189 33.333 0.00 0.00 0.00 1.89
534 535 9.587772 GATCTGTAGCTCTAGTTTGAAATTACA 57.412 33.333 0.00 0.00 0.00 2.41
535 536 9.944376 ATCTGTAGCTCTAGTTTGAAATTACAA 57.056 29.630 0.00 0.00 0.00 2.41
536 537 9.424319 TCTGTAGCTCTAGTTTGAAATTACAAG 57.576 33.333 0.00 0.00 0.00 3.16
537 538 9.209175 CTGTAGCTCTAGTTTGAAATTACAAGT 57.791 33.333 0.00 0.00 0.00 3.16
540 541 8.779354 AGCTCTAGTTTGAAATTACAAGTAGG 57.221 34.615 0.00 0.00 0.00 3.18
541 542 7.824779 AGCTCTAGTTTGAAATTACAAGTAGGG 59.175 37.037 0.00 0.00 0.00 3.53
542 543 7.822822 GCTCTAGTTTGAAATTACAAGTAGGGA 59.177 37.037 8.92 0.00 0.00 4.20
543 544 9.372369 CTCTAGTTTGAAATTACAAGTAGGGAG 57.628 37.037 0.00 0.00 0.00 4.30
544 545 9.096823 TCTAGTTTGAAATTACAAGTAGGGAGA 57.903 33.333 0.00 0.00 0.00 3.71
545 546 9.720769 CTAGTTTGAAATTACAAGTAGGGAGAA 57.279 33.333 0.00 0.00 0.00 2.87
546 547 8.990163 AGTTTGAAATTACAAGTAGGGAGAAA 57.010 30.769 0.00 0.00 0.00 2.52
547 548 9.067986 AGTTTGAAATTACAAGTAGGGAGAAAG 57.932 33.333 0.00 0.00 0.00 2.62
548 549 7.996098 TTGAAATTACAAGTAGGGAGAAAGG 57.004 36.000 0.00 0.00 0.00 3.11
549 550 7.324388 TGAAATTACAAGTAGGGAGAAAGGA 57.676 36.000 0.00 0.00 0.00 3.36
550 551 7.394816 TGAAATTACAAGTAGGGAGAAAGGAG 58.605 38.462 0.00 0.00 0.00 3.69
551 552 5.959583 ATTACAAGTAGGGAGAAAGGAGG 57.040 43.478 0.00 0.00 0.00 4.30
552 553 3.562108 ACAAGTAGGGAGAAAGGAGGA 57.438 47.619 0.00 0.00 0.00 3.71
553 554 3.870559 ACAAGTAGGGAGAAAGGAGGAA 58.129 45.455 0.00 0.00 0.00 3.36
554 555 3.841255 ACAAGTAGGGAGAAAGGAGGAAG 59.159 47.826 0.00 0.00 0.00 3.46
555 556 4.097418 CAAGTAGGGAGAAAGGAGGAAGA 58.903 47.826 0.00 0.00 0.00 2.87
556 557 3.989056 AGTAGGGAGAAAGGAGGAAGAG 58.011 50.000 0.00 0.00 0.00 2.85
557 558 3.598782 AGTAGGGAGAAAGGAGGAAGAGA 59.401 47.826 0.00 0.00 0.00 3.10
558 559 3.114643 AGGGAGAAAGGAGGAAGAGAG 57.885 52.381 0.00 0.00 0.00 3.20
559 560 2.385417 AGGGAGAAAGGAGGAAGAGAGT 59.615 50.000 0.00 0.00 0.00 3.24
560 561 3.178046 GGGAGAAAGGAGGAAGAGAGTT 58.822 50.000 0.00 0.00 0.00 3.01
561 562 4.046103 AGGGAGAAAGGAGGAAGAGAGTTA 59.954 45.833 0.00 0.00 0.00 2.24
562 563 4.160814 GGGAGAAAGGAGGAAGAGAGTTAC 59.839 50.000 0.00 0.00 0.00 2.50
563 564 4.773149 GGAGAAAGGAGGAAGAGAGTTACA 59.227 45.833 0.00 0.00 0.00 2.41
564 565 5.246429 GGAGAAAGGAGGAAGAGAGTTACAA 59.754 44.000 0.00 0.00 0.00 2.41
565 566 6.353404 AGAAAGGAGGAAGAGAGTTACAAG 57.647 41.667 0.00 0.00 0.00 3.16
566 567 4.545208 AAGGAGGAAGAGAGTTACAAGC 57.455 45.455 0.00 0.00 0.00 4.01
567 568 3.511477 AGGAGGAAGAGAGTTACAAGCA 58.489 45.455 0.00 0.00 0.00 3.91
568 569 3.904339 AGGAGGAAGAGAGTTACAAGCAA 59.096 43.478 0.00 0.00 0.00 3.91
569 570 4.348168 AGGAGGAAGAGAGTTACAAGCAAA 59.652 41.667 0.00 0.00 0.00 3.68
570 571 5.013599 AGGAGGAAGAGAGTTACAAGCAAAT 59.986 40.000 0.00 0.00 0.00 2.32
571 572 5.123027 GGAGGAAGAGAGTTACAAGCAAATG 59.877 44.000 0.00 0.00 0.00 2.32
572 573 5.006386 AGGAAGAGAGTTACAAGCAAATGG 58.994 41.667 0.00 0.00 0.00 3.16
573 574 4.156739 GGAAGAGAGTTACAAGCAAATGGG 59.843 45.833 0.00 0.00 0.00 4.00
574 575 3.690460 AGAGAGTTACAAGCAAATGGGG 58.310 45.455 0.00 0.00 0.00 4.96
575 576 2.755103 GAGAGTTACAAGCAAATGGGGG 59.245 50.000 0.00 0.00 0.00 5.40
576 577 2.378547 AGAGTTACAAGCAAATGGGGGA 59.621 45.455 0.00 0.00 0.00 4.81
577 578 2.492088 GAGTTACAAGCAAATGGGGGAC 59.508 50.000 0.00 0.00 0.00 4.46
578 579 2.110011 AGTTACAAGCAAATGGGGGACT 59.890 45.455 0.00 0.00 0.00 3.85
579 580 2.214376 TACAAGCAAATGGGGGACTG 57.786 50.000 0.00 0.00 0.00 3.51
580 581 1.187567 ACAAGCAAATGGGGGACTGC 61.188 55.000 0.00 0.00 34.96 4.40
581 582 1.610379 AAGCAAATGGGGGACTGCC 60.610 57.895 0.00 0.00 35.33 4.85
582 583 3.451894 GCAAATGGGGGACTGCCG 61.452 66.667 0.00 0.00 33.83 5.69
583 584 2.035626 CAAATGGGGGACTGCCGT 59.964 61.111 0.00 0.00 33.83 5.68
584 585 2.035626 AAATGGGGGACTGCCGTG 59.964 61.111 0.00 0.00 33.83 4.94
585 586 2.840753 AAATGGGGGACTGCCGTGT 61.841 57.895 0.00 0.00 33.83 4.49
586 587 2.764637 AAATGGGGGACTGCCGTGTC 62.765 60.000 0.00 0.00 36.31 3.67
588 589 3.948719 GGGGGACTGCCGTGTCAA 61.949 66.667 0.00 0.00 38.61 3.18
589 590 2.112297 GGGGACTGCCGTGTCAAA 59.888 61.111 0.00 0.00 38.61 2.69
590 591 2.258726 GGGGACTGCCGTGTCAAAC 61.259 63.158 0.00 0.00 38.61 2.93
591 592 1.227853 GGGACTGCCGTGTCAAACT 60.228 57.895 0.00 0.00 38.61 2.66
592 593 1.507141 GGGACTGCCGTGTCAAACTG 61.507 60.000 0.00 0.00 38.61 3.16
593 594 1.507141 GGACTGCCGTGTCAAACTGG 61.507 60.000 0.00 0.00 38.61 4.00
594 595 2.117941 GACTGCCGTGTCAAACTGGC 62.118 60.000 6.89 6.89 44.05 4.85
595 596 2.904866 TGCCGTGTCAAACTGGCC 60.905 61.111 0.00 0.00 43.52 5.36
596 597 4.025401 GCCGTGTCAAACTGGCCG 62.025 66.667 0.00 0.00 40.45 6.13
597 598 4.025401 CCGTGTCAAACTGGCCGC 62.025 66.667 0.00 0.00 0.00 6.53
598 599 4.025401 CGTGTCAAACTGGCCGCC 62.025 66.667 1.04 1.04 0.00 6.13
599 600 3.670377 GTGTCAAACTGGCCGCCC 61.670 66.667 7.03 0.00 0.00 6.13
600 601 3.884774 TGTCAAACTGGCCGCCCT 61.885 61.111 7.03 0.00 0.00 5.19
601 602 3.056328 GTCAAACTGGCCGCCCTC 61.056 66.667 7.03 0.00 0.00 4.30
602 603 3.565214 TCAAACTGGCCGCCCTCA 61.565 61.111 7.03 0.00 0.00 3.86
603 604 3.365265 CAAACTGGCCGCCCTCAC 61.365 66.667 7.03 0.00 0.00 3.51
604 605 3.884774 AAACTGGCCGCCCTCACA 61.885 61.111 7.03 0.00 0.00 3.58
605 606 3.429372 AAACTGGCCGCCCTCACAA 62.429 57.895 7.03 0.00 0.00 3.33
606 607 3.850098 AACTGGCCGCCCTCACAAG 62.850 63.158 7.03 0.00 0.00 3.16
609 610 4.344865 GGCCGCCCTCACAAGGAA 62.345 66.667 0.00 0.00 46.67 3.36
610 611 2.747855 GCCGCCCTCACAAGGAAG 60.748 66.667 0.00 0.00 46.67 3.46
611 612 2.747855 CCGCCCTCACAAGGAAGC 60.748 66.667 0.00 0.00 46.67 3.86
612 613 2.348998 CGCCCTCACAAGGAAGCT 59.651 61.111 0.00 0.00 46.67 3.74
613 614 2.037136 CGCCCTCACAAGGAAGCTG 61.037 63.158 0.00 0.00 46.67 4.24
614 615 1.073897 GCCCTCACAAGGAAGCTGT 59.926 57.895 0.00 0.00 46.67 4.40
615 616 0.957888 GCCCTCACAAGGAAGCTGTC 60.958 60.000 0.00 0.00 46.67 3.51
616 617 0.322008 CCCTCACAAGGAAGCTGTCC 60.322 60.000 6.79 6.79 46.67 4.02
629 630 5.309638 GGAAGCTGTCCTCCTTATTTATCC 58.690 45.833 7.46 0.00 43.98 2.59
630 631 5.072464 GGAAGCTGTCCTCCTTATTTATCCT 59.928 44.000 7.46 0.00 43.98 3.24
631 632 6.270231 GGAAGCTGTCCTCCTTATTTATCCTA 59.730 42.308 7.46 0.00 43.98 2.94
632 633 6.673839 AGCTGTCCTCCTTATTTATCCTAC 57.326 41.667 0.00 0.00 0.00 3.18
633 634 5.544562 AGCTGTCCTCCTTATTTATCCTACC 59.455 44.000 0.00 0.00 0.00 3.18
634 635 5.544562 GCTGTCCTCCTTATTTATCCTACCT 59.455 44.000 0.00 0.00 0.00 3.08
635 636 6.295405 GCTGTCCTCCTTATTTATCCTACCTC 60.295 46.154 0.00 0.00 0.00 3.85
636 637 5.773680 TGTCCTCCTTATTTATCCTACCTCG 59.226 44.000 0.00 0.00 0.00 4.63
637 638 5.774184 GTCCTCCTTATTTATCCTACCTCGT 59.226 44.000 0.00 0.00 0.00 4.18
638 639 5.773680 TCCTCCTTATTTATCCTACCTCGTG 59.226 44.000 0.00 0.00 0.00 4.35
639 640 5.047235 CCTCCTTATTTATCCTACCTCGTGG 60.047 48.000 0.99 0.99 39.83 4.94
641 642 5.537674 TCCTTATTTATCCTACCTCGTGGTC 59.462 44.000 13.38 0.00 44.78 4.02
642 643 5.279356 CCTTATTTATCCTACCTCGTGGTCC 60.279 48.000 13.38 0.00 44.78 4.46
643 644 2.832643 TTATCCTACCTCGTGGTCCA 57.167 50.000 13.38 0.00 44.78 4.02
644 645 3.323774 TTATCCTACCTCGTGGTCCAT 57.676 47.619 13.38 6.32 44.78 3.41
645 646 2.176247 ATCCTACCTCGTGGTCCATT 57.824 50.000 13.38 0.00 44.78 3.16
646 647 1.481871 TCCTACCTCGTGGTCCATTC 58.518 55.000 13.38 0.00 44.78 2.67
647 648 0.464452 CCTACCTCGTGGTCCATTCC 59.536 60.000 13.38 0.00 44.78 3.01
648 649 1.486211 CTACCTCGTGGTCCATTCCT 58.514 55.000 13.38 0.00 44.78 3.36
649 650 1.831736 CTACCTCGTGGTCCATTCCTT 59.168 52.381 13.38 0.00 44.78 3.36
650 651 0.324943 ACCTCGTGGTCCATTCCTTG 59.675 55.000 2.61 0.00 44.78 3.61
651 652 1.026718 CCTCGTGGTCCATTCCTTGC 61.027 60.000 0.00 0.00 0.00 4.01
652 653 1.002624 TCGTGGTCCATTCCTTGCC 60.003 57.895 0.00 0.00 0.00 4.52
653 654 1.303236 CGTGGTCCATTCCTTGCCA 60.303 57.895 0.00 0.00 0.00 4.92
654 655 1.308069 CGTGGTCCATTCCTTGCCAG 61.308 60.000 0.00 0.00 0.00 4.85
655 656 1.304381 TGGTCCATTCCTTGCCAGC 60.304 57.895 0.00 0.00 0.00 4.85
656 657 2.409870 GGTCCATTCCTTGCCAGCG 61.410 63.158 0.00 0.00 0.00 5.18
657 658 1.675641 GTCCATTCCTTGCCAGCGT 60.676 57.895 0.00 0.00 0.00 5.07
658 659 0.392461 GTCCATTCCTTGCCAGCGTA 60.392 55.000 0.00 0.00 0.00 4.42
659 660 0.107703 TCCATTCCTTGCCAGCGTAG 60.108 55.000 0.00 0.00 0.00 3.51
683 684 4.554036 GATGGGCGCCTGACCCTC 62.554 72.222 28.56 8.18 46.01 4.30
688 689 3.075005 GCGCCTGACCCTCCTGTA 61.075 66.667 0.00 0.00 0.00 2.74
689 690 3.082579 GCGCCTGACCCTCCTGTAG 62.083 68.421 0.00 0.00 0.00 2.74
690 691 2.427245 CGCCTGACCCTCCTGTAGG 61.427 68.421 0.00 0.00 46.09 3.18
691 692 2.736826 GCCTGACCCTCCTGTAGGC 61.737 68.421 0.00 0.00 45.03 3.93
692 693 2.066999 CCTGACCCTCCTGTAGGCC 61.067 68.421 0.00 0.00 45.03 5.19
693 694 2.040606 TGACCCTCCTGTAGGCCC 59.959 66.667 0.00 0.00 45.03 5.80
694 695 2.768769 GACCCTCCTGTAGGCCCC 60.769 72.222 0.00 0.00 45.03 5.80
695 696 4.798682 ACCCTCCTGTAGGCCCCG 62.799 72.222 0.00 0.00 45.03 5.73
696 697 4.475444 CCCTCCTGTAGGCCCCGA 62.475 72.222 0.00 0.00 45.03 5.14
697 698 3.155167 CCTCCTGTAGGCCCCGAC 61.155 72.222 0.00 0.00 38.97 4.79
698 699 3.528370 CTCCTGTAGGCCCCGACG 61.528 72.222 0.00 0.00 34.44 5.12
699 700 4.371417 TCCTGTAGGCCCCGACGT 62.371 66.667 0.00 0.00 34.44 4.34
700 701 3.834799 CCTGTAGGCCCCGACGTC 61.835 72.222 5.18 5.18 0.00 4.34
701 702 3.066190 CTGTAGGCCCCGACGTCA 61.066 66.667 17.16 0.00 0.00 4.35
702 703 3.064987 CTGTAGGCCCCGACGTCAG 62.065 68.421 17.16 3.63 0.00 3.51
703 704 3.066814 GTAGGCCCCGACGTCAGT 61.067 66.667 17.16 0.00 0.00 3.41
704 705 3.066190 TAGGCCCCGACGTCAGTG 61.066 66.667 17.16 3.56 0.00 3.66
708 709 4.003788 CCCCGACGTCAGTGGCTT 62.004 66.667 17.16 0.00 0.00 4.35
709 710 2.738521 CCCGACGTCAGTGGCTTG 60.739 66.667 17.16 0.00 0.00 4.01
710 711 2.029073 CCGACGTCAGTGGCTTGT 59.971 61.111 17.16 0.00 0.00 3.16
711 712 1.594293 CCGACGTCAGTGGCTTGTT 60.594 57.895 17.16 0.00 0.00 2.83
712 713 1.564622 CGACGTCAGTGGCTTGTTG 59.435 57.895 17.16 0.00 0.00 3.33
713 714 0.874175 CGACGTCAGTGGCTTGTTGA 60.874 55.000 17.16 0.00 0.00 3.18
714 715 0.582005 GACGTCAGTGGCTTGTTGAC 59.418 55.000 11.55 0.00 38.23 3.18
715 716 0.178068 ACGTCAGTGGCTTGTTGACT 59.822 50.000 0.00 0.00 39.18 3.41
716 717 0.583438 CGTCAGTGGCTTGTTGACTG 59.417 55.000 0.00 0.00 39.18 3.51
717 718 0.947244 GTCAGTGGCTTGTTGACTGG 59.053 55.000 0.00 0.00 38.12 4.00
718 719 0.179020 TCAGTGGCTTGTTGACTGGG 60.179 55.000 0.00 0.00 38.12 4.45
719 720 0.466189 CAGTGGCTTGTTGACTGGGT 60.466 55.000 0.00 0.00 34.63 4.51
720 721 0.179018 AGTGGCTTGTTGACTGGGTC 60.179 55.000 0.00 0.00 0.00 4.46
721 722 0.179018 GTGGCTTGTTGACTGGGTCT 60.179 55.000 0.00 0.00 33.15 3.85
722 723 0.550914 TGGCTTGTTGACTGGGTCTT 59.449 50.000 0.00 0.00 33.15 3.01
723 724 0.954452 GGCTTGTTGACTGGGTCTTG 59.046 55.000 0.00 0.00 33.15 3.02
724 725 0.954452 GCTTGTTGACTGGGTCTTGG 59.046 55.000 0.00 0.00 33.15 3.61
725 726 0.954452 CTTGTTGACTGGGTCTTGGC 59.046 55.000 0.00 0.00 33.15 4.52
726 727 0.550914 TTGTTGACTGGGTCTTGGCT 59.449 50.000 0.00 0.00 33.15 4.75
727 728 0.179020 TGTTGACTGGGTCTTGGCTG 60.179 55.000 0.00 0.00 33.15 4.85
728 729 1.228245 TTGACTGGGTCTTGGCTGC 60.228 57.895 0.00 0.00 33.15 5.25
729 730 2.360475 GACTGGGTCTTGGCTGCC 60.360 66.667 12.87 12.87 0.00 4.85
730 731 3.927481 GACTGGGTCTTGGCTGCCC 62.927 68.421 17.53 0.00 42.64 5.36
731 732 3.655211 CTGGGTCTTGGCTGCCCT 61.655 66.667 17.53 0.00 42.77 5.19
732 733 3.933048 CTGGGTCTTGGCTGCCCTG 62.933 68.421 17.53 8.96 42.77 4.45
733 734 4.748144 GGGTCTTGGCTGCCCTGG 62.748 72.222 17.53 6.26 39.31 4.45
742 743 4.864334 CTGCCCTGGCCGTCATCC 62.864 72.222 5.57 0.00 41.09 3.51
744 745 4.554036 GCCCTGGCCGTCATCCTC 62.554 72.222 0.00 0.00 34.56 3.71
745 746 2.765807 CCCTGGCCGTCATCCTCT 60.766 66.667 0.00 0.00 0.00 3.69
746 747 2.503061 CCTGGCCGTCATCCTCTG 59.497 66.667 0.00 0.00 0.00 3.35
747 748 2.362369 CCTGGCCGTCATCCTCTGT 61.362 63.158 0.00 0.00 0.00 3.41
748 749 1.043116 CCTGGCCGTCATCCTCTGTA 61.043 60.000 0.00 0.00 0.00 2.74
749 750 0.824109 CTGGCCGTCATCCTCTGTAA 59.176 55.000 0.00 0.00 0.00 2.41
750 751 0.535335 TGGCCGTCATCCTCTGTAAC 59.465 55.000 0.00 0.00 0.00 2.50
751 752 0.179081 GGCCGTCATCCTCTGTAACC 60.179 60.000 0.00 0.00 0.00 2.85
752 753 0.527817 GCCGTCATCCTCTGTAACCG 60.528 60.000 0.00 0.00 0.00 4.44
753 754 0.102481 CCGTCATCCTCTGTAACCGG 59.898 60.000 0.00 0.00 0.00 5.28
754 755 0.527817 CGTCATCCTCTGTAACCGGC 60.528 60.000 0.00 0.00 0.00 6.13
755 756 0.824759 GTCATCCTCTGTAACCGGCT 59.175 55.000 0.00 0.00 0.00 5.52
756 757 1.112113 TCATCCTCTGTAACCGGCTC 58.888 55.000 0.00 0.00 0.00 4.70
757 758 0.249073 CATCCTCTGTAACCGGCTCG 60.249 60.000 0.00 0.00 0.00 5.03
767 768 2.499205 CCGGCTCGGTGATGCTAA 59.501 61.111 5.56 0.00 42.73 3.09
768 769 1.883084 CCGGCTCGGTGATGCTAAC 60.883 63.158 5.56 0.00 42.73 2.34
769 770 1.153647 CGGCTCGGTGATGCTAACA 60.154 57.895 0.00 0.00 0.00 2.41
770 771 1.148157 CGGCTCGGTGATGCTAACAG 61.148 60.000 0.00 0.00 0.00 3.16
771 772 0.175760 GGCTCGGTGATGCTAACAGA 59.824 55.000 0.00 0.00 0.00 3.41
772 773 1.281899 GCTCGGTGATGCTAACAGAC 58.718 55.000 0.00 0.00 0.00 3.51
773 774 1.134965 GCTCGGTGATGCTAACAGACT 60.135 52.381 0.00 0.00 0.00 3.24
804 805 5.694910 ACAACCTACACAGAATTACAACGAG 59.305 40.000 0.00 0.00 0.00 4.18
810 811 6.780706 ACACAGAATTACAACGAGGTTTAG 57.219 37.500 0.00 0.00 0.00 1.85
823 824 4.178214 TTTAGCATGCCGCAGCGC 62.178 61.111 15.66 0.00 46.13 5.92
853 854 2.171489 GAAGTCGCGAGTGGCCAAAC 62.171 60.000 18.79 3.21 38.94 2.93
928 933 0.598065 AGATTTTCCTTGCGCCACAC 59.402 50.000 4.18 0.00 0.00 3.82
1066 1099 2.765807 AGCTCTGGATGGACCCGG 60.766 66.667 0.00 0.00 38.00 5.73
1286 2903 1.002366 CTCCAAACAAGATCGCTCGG 58.998 55.000 0.00 0.00 0.00 4.63
1354 5128 2.176055 CGTACGCGTCTCTGCACT 59.824 61.111 18.63 0.00 34.15 4.40
1355 5129 2.146519 CGTACGCGTCTCTGCACTG 61.147 63.158 18.63 0.00 34.15 3.66
1356 5130 2.126463 TACGCGTCTCTGCACTGC 60.126 61.111 18.63 0.00 34.15 4.40
1445 5219 3.321111 GGCCTAATCTCACGATAAGGACA 59.679 47.826 0.00 0.00 0.00 4.02
1547 5330 1.528292 GCGAGCGGGGTCTCTATGAT 61.528 60.000 0.00 0.00 0.00 2.45
1548 5331 0.242286 CGAGCGGGGTCTCTATGATG 59.758 60.000 0.00 0.00 0.00 3.07
1640 5423 1.260538 TGTTCGAGGAGCTGCTGGAT 61.261 55.000 20.04 0.00 0.00 3.41
1651 5434 4.615815 GCTGGATGAGGCGGCGAT 62.616 66.667 12.98 0.00 0.00 4.58
1751 5534 2.526304 AGTACGTGCATGTGTTCAGT 57.474 45.000 21.92 1.26 0.00 3.41
1752 5535 2.404215 AGTACGTGCATGTGTTCAGTC 58.596 47.619 21.92 3.62 0.00 3.51
1753 5536 2.131972 GTACGTGCATGTGTTCAGTCA 58.868 47.619 21.92 0.00 0.00 3.41
1754 5537 1.882912 ACGTGCATGTGTTCAGTCAT 58.117 45.000 11.65 0.00 0.00 3.06
1755 5538 1.532437 ACGTGCATGTGTTCAGTCATG 59.468 47.619 11.65 0.00 42.71 3.07
1782 5569 3.945434 GCACCGCGATGATGCTGG 61.945 66.667 3.51 0.00 32.65 4.85
1827 5614 1.200020 GTTCACCGGAAGAATGCTTGG 59.800 52.381 9.46 0.00 33.61 3.61
1828 5615 0.322456 TCACCGGAAGAATGCTTGGG 60.322 55.000 9.46 0.00 33.61 4.12
1838 5630 0.396139 AATGCTTGGGCGATGTCCAT 60.396 50.000 0.00 0.00 37.08 3.41
1954 5746 0.458889 GCCGATAAGTGCCACACGTA 60.459 55.000 0.00 0.00 39.64 3.57
2010 5802 2.483188 GGTGTATAAGAGGAACAGCCCG 60.483 54.545 0.00 0.00 36.00 6.13
2015 5807 2.045926 GAGGAACAGCCCGCACAT 60.046 61.111 0.00 0.00 37.37 3.21
2073 5866 1.378732 TTTTTCCCTCCCGATCCCTT 58.621 50.000 0.00 0.00 0.00 3.95
2116 5909 1.301795 TTGATAACGCCCACACGCA 60.302 52.632 0.00 0.00 36.19 5.24
2117 5910 0.675208 TTGATAACGCCCACACGCAT 60.675 50.000 0.00 0.00 36.19 4.73
2231 6024 5.157781 GTTCGTTTAATTGCAGTTGCCATA 58.842 37.500 4.47 0.00 41.18 2.74
2259 6052 0.179084 CTACGGTTGCCATGTCGGAT 60.179 55.000 0.00 0.00 36.56 4.18
2261 6054 0.179084 ACGGTTGCCATGTCGGATAG 60.179 55.000 0.00 0.00 36.56 2.08
2385 6178 1.736681 GCAGTTGAGAGAGTTGCCATC 59.263 52.381 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.914908 GCGAGGAGGCGGAGAGATC 61.915 68.421 0.00 0.00 0.00 2.75
16 17 4.218578 ATCAGGCTGGCTCGCGAG 62.219 66.667 31.37 31.37 0.00 5.03
17 18 4.519437 CATCAGGCTGGCTCGCGA 62.519 66.667 15.73 9.26 0.00 5.87
18 19 4.519437 TCATCAGGCTGGCTCGCG 62.519 66.667 15.73 0.00 0.00 5.87
19 20 2.588314 CTCATCAGGCTGGCTCGC 60.588 66.667 15.73 0.00 0.00 5.03
20 21 2.108566 CCTCATCAGGCTGGCTCG 59.891 66.667 15.73 0.85 30.98 5.03
37 38 2.032681 AACTTCCTCAGGCACGGC 59.967 61.111 0.00 0.00 0.00 5.68
38 39 1.376037 GGAACTTCCTCAGGCACGG 60.376 63.158 0.00 0.00 32.53 4.94
39 40 1.738099 CGGAACTTCCTCAGGCACG 60.738 63.158 6.25 0.00 33.30 5.34
40 41 0.951040 CACGGAACTTCCTCAGGCAC 60.951 60.000 6.25 0.00 33.30 5.01
41 42 1.371183 CACGGAACTTCCTCAGGCA 59.629 57.895 6.25 0.00 33.30 4.75
42 43 0.670854 GACACGGAACTTCCTCAGGC 60.671 60.000 6.25 0.00 33.30 4.85
43 44 0.388649 CGACACGGAACTTCCTCAGG 60.389 60.000 6.25 0.00 33.30 3.86
44 45 0.314302 ACGACACGGAACTTCCTCAG 59.686 55.000 6.25 0.00 33.30 3.35
45 46 0.313043 GACGACACGGAACTTCCTCA 59.687 55.000 6.25 0.00 33.30 3.86
46 47 0.388263 GGACGACACGGAACTTCCTC 60.388 60.000 6.25 0.00 33.30 3.71
47 48 1.664306 GGACGACACGGAACTTCCT 59.336 57.895 6.25 0.00 33.30 3.36
48 49 1.731969 CGGACGACACGGAACTTCC 60.732 63.158 0.00 0.00 0.00 3.46
49 50 2.370393 GCGGACGACACGGAACTTC 61.370 63.158 0.00 0.00 0.00 3.01
50 51 2.355481 GCGGACGACACGGAACTT 60.355 61.111 0.00 0.00 0.00 2.66
51 52 4.353437 GGCGGACGACACGGAACT 62.353 66.667 0.00 0.00 0.00 3.01
85 86 3.358076 GACCCAAGACCCTCGCGAG 62.358 68.421 29.06 29.06 0.00 5.03
86 87 3.379445 GACCCAAGACCCTCGCGA 61.379 66.667 9.26 9.26 0.00 5.87
87 88 3.382832 AGACCCAAGACCCTCGCG 61.383 66.667 0.00 0.00 0.00 5.87
88 89 2.266055 CAGACCCAAGACCCTCGC 59.734 66.667 0.00 0.00 0.00 5.03
89 90 1.293498 CACAGACCCAAGACCCTCG 59.707 63.158 0.00 0.00 0.00 4.63
90 91 0.765510 AACACAGACCCAAGACCCTC 59.234 55.000 0.00 0.00 0.00 4.30
91 92 0.474184 CAACACAGACCCAAGACCCT 59.526 55.000 0.00 0.00 0.00 4.34
92 93 0.472471 TCAACACAGACCCAAGACCC 59.528 55.000 0.00 0.00 0.00 4.46
93 94 2.154462 CATCAACACAGACCCAAGACC 58.846 52.381 0.00 0.00 0.00 3.85
94 95 3.126001 TCATCAACACAGACCCAAGAC 57.874 47.619 0.00 0.00 0.00 3.01
95 96 3.390967 TCTTCATCAACACAGACCCAAGA 59.609 43.478 0.00 0.00 0.00 3.02
96 97 3.743521 TCTTCATCAACACAGACCCAAG 58.256 45.455 0.00 0.00 0.00 3.61
97 98 3.855255 TCTTCATCAACACAGACCCAA 57.145 42.857 0.00 0.00 0.00 4.12
98 99 3.559811 CCATCTTCATCAACACAGACCCA 60.560 47.826 0.00 0.00 0.00 4.51
99 100 3.012518 CCATCTTCATCAACACAGACCC 58.987 50.000 0.00 0.00 0.00 4.46
100 101 3.012518 CCCATCTTCATCAACACAGACC 58.987 50.000 0.00 0.00 0.00 3.85
101 102 2.421424 GCCCATCTTCATCAACACAGAC 59.579 50.000 0.00 0.00 0.00 3.51
102 103 2.618816 GGCCCATCTTCATCAACACAGA 60.619 50.000 0.00 0.00 0.00 3.41
103 104 1.747355 GGCCCATCTTCATCAACACAG 59.253 52.381 0.00 0.00 0.00 3.66
104 105 1.075212 TGGCCCATCTTCATCAACACA 59.925 47.619 0.00 0.00 0.00 3.72
105 106 1.838112 TGGCCCATCTTCATCAACAC 58.162 50.000 0.00 0.00 0.00 3.32
106 107 2.025131 TCATGGCCCATCTTCATCAACA 60.025 45.455 0.00 0.00 0.00 3.33
107 108 2.658285 TCATGGCCCATCTTCATCAAC 58.342 47.619 0.00 0.00 0.00 3.18
108 109 3.227614 CATCATGGCCCATCTTCATCAA 58.772 45.455 0.00 0.00 0.00 2.57
109 110 2.490168 CCATCATGGCCCATCTTCATCA 60.490 50.000 0.00 0.00 0.00 3.07
110 111 2.168496 CCATCATGGCCCATCTTCATC 58.832 52.381 0.00 0.00 0.00 2.92
111 112 1.203137 CCCATCATGGCCCATCTTCAT 60.203 52.381 0.00 0.00 35.79 2.57
112 113 0.186630 CCCATCATGGCCCATCTTCA 59.813 55.000 0.00 0.00 35.79 3.02
113 114 3.047039 CCCATCATGGCCCATCTTC 57.953 57.895 0.00 0.00 35.79 2.87
482 483 8.247666 TGAGTGATGTTCATCAATAGAGAGAT 57.752 34.615 15.65 0.00 31.60 2.75
483 484 7.559170 TCTGAGTGATGTTCATCAATAGAGAGA 59.441 37.037 15.65 11.26 31.60 3.10
484 485 7.714703 TCTGAGTGATGTTCATCAATAGAGAG 58.285 38.462 15.65 9.60 31.60 3.20
485 486 7.651027 TCTGAGTGATGTTCATCAATAGAGA 57.349 36.000 15.65 15.07 31.60 3.10
486 487 8.361889 AGATCTGAGTGATGTTCATCAATAGAG 58.638 37.037 15.65 13.44 35.14 2.43
487 488 8.142551 CAGATCTGAGTGATGTTCATCAATAGA 58.857 37.037 18.34 17.13 35.14 1.98
488 489 7.927092 ACAGATCTGAGTGATGTTCATCAATAG 59.073 37.037 29.27 13.50 35.14 1.73
489 490 7.789026 ACAGATCTGAGTGATGTTCATCAATA 58.211 34.615 29.27 2.58 35.14 1.90
490 491 6.651086 ACAGATCTGAGTGATGTTCATCAAT 58.349 36.000 29.27 14.88 35.14 2.57
491 492 6.046290 ACAGATCTGAGTGATGTTCATCAA 57.954 37.500 29.27 2.48 35.14 2.57
492 493 5.672421 ACAGATCTGAGTGATGTTCATCA 57.328 39.130 29.27 10.88 35.14 3.07
493 494 5.691305 GCTACAGATCTGAGTGATGTTCATC 59.309 44.000 29.27 5.91 35.14 2.92
494 495 5.363292 AGCTACAGATCTGAGTGATGTTCAT 59.637 40.000 29.27 4.55 35.14 2.57
495 496 4.708909 AGCTACAGATCTGAGTGATGTTCA 59.291 41.667 29.27 0.57 35.14 3.18
496 497 5.067674 AGAGCTACAGATCTGAGTGATGTTC 59.932 44.000 29.27 16.30 39.62 3.18
497 498 4.955450 AGAGCTACAGATCTGAGTGATGTT 59.045 41.667 29.27 6.58 39.62 2.71
498 499 4.535781 AGAGCTACAGATCTGAGTGATGT 58.464 43.478 29.27 12.13 39.62 3.06
499 500 5.764686 ACTAGAGCTACAGATCTGAGTGATG 59.235 44.000 29.27 13.11 41.41 3.07
500 501 5.940617 ACTAGAGCTACAGATCTGAGTGAT 58.059 41.667 29.27 15.86 41.41 3.06
501 502 5.366482 ACTAGAGCTACAGATCTGAGTGA 57.634 43.478 29.27 9.99 41.41 3.41
502 503 6.094742 TCAAACTAGAGCTACAGATCTGAGTG 59.905 42.308 29.27 17.49 41.41 3.51
503 504 6.184068 TCAAACTAGAGCTACAGATCTGAGT 58.816 40.000 29.27 16.32 41.41 3.41
504 505 6.691754 TCAAACTAGAGCTACAGATCTGAG 57.308 41.667 29.27 20.52 41.41 3.35
505 506 7.468141 TTTCAAACTAGAGCTACAGATCTGA 57.532 36.000 29.27 11.66 41.41 3.27
506 507 8.715191 AATTTCAAACTAGAGCTACAGATCTG 57.285 34.615 21.37 21.37 41.41 2.90
507 508 9.810545 GTAATTTCAAACTAGAGCTACAGATCT 57.189 33.333 2.17 2.17 43.91 2.75
508 509 9.587772 TGTAATTTCAAACTAGAGCTACAGATC 57.412 33.333 0.00 0.00 0.00 2.75
509 510 9.944376 TTGTAATTTCAAACTAGAGCTACAGAT 57.056 29.630 0.00 0.00 0.00 2.90
510 511 9.424319 CTTGTAATTTCAAACTAGAGCTACAGA 57.576 33.333 0.00 0.00 0.00 3.41
511 512 9.209175 ACTTGTAATTTCAAACTAGAGCTACAG 57.791 33.333 0.00 0.00 0.00 2.74
514 515 9.871238 CCTACTTGTAATTTCAAACTAGAGCTA 57.129 33.333 0.00 0.00 0.00 3.32
515 516 7.824779 CCCTACTTGTAATTTCAAACTAGAGCT 59.175 37.037 0.00 0.00 0.00 4.09
516 517 7.822822 TCCCTACTTGTAATTTCAAACTAGAGC 59.177 37.037 0.00 0.00 0.00 4.09
517 518 9.372369 CTCCCTACTTGTAATTTCAAACTAGAG 57.628 37.037 0.00 0.00 0.00 2.43
518 519 9.096823 TCTCCCTACTTGTAATTTCAAACTAGA 57.903 33.333 0.00 0.00 0.00 2.43
519 520 9.720769 TTCTCCCTACTTGTAATTTCAAACTAG 57.279 33.333 0.00 0.00 0.00 2.57
521 522 8.990163 TTTCTCCCTACTTGTAATTTCAAACT 57.010 30.769 0.00 0.00 0.00 2.66
522 523 8.297426 CCTTTCTCCCTACTTGTAATTTCAAAC 58.703 37.037 0.00 0.00 0.00 2.93
523 524 8.221944 TCCTTTCTCCCTACTTGTAATTTCAAA 58.778 33.333 0.00 0.00 0.00 2.69
524 525 7.751646 TCCTTTCTCCCTACTTGTAATTTCAA 58.248 34.615 0.00 0.00 0.00 2.69
525 526 7.324388 TCCTTTCTCCCTACTTGTAATTTCA 57.676 36.000 0.00 0.00 0.00 2.69
526 527 6.824196 CCTCCTTTCTCCCTACTTGTAATTTC 59.176 42.308 0.00 0.00 0.00 2.17
527 528 6.504279 TCCTCCTTTCTCCCTACTTGTAATTT 59.496 38.462 0.00 0.00 0.00 1.82
528 529 6.030082 TCCTCCTTTCTCCCTACTTGTAATT 58.970 40.000 0.00 0.00 0.00 1.40
529 530 5.600749 TCCTCCTTTCTCCCTACTTGTAAT 58.399 41.667 0.00 0.00 0.00 1.89
530 531 5.019657 TCCTCCTTTCTCCCTACTTGTAA 57.980 43.478 0.00 0.00 0.00 2.41
531 532 4.687262 TCCTCCTTTCTCCCTACTTGTA 57.313 45.455 0.00 0.00 0.00 2.41
532 533 3.562108 TCCTCCTTTCTCCCTACTTGT 57.438 47.619 0.00 0.00 0.00 3.16
533 534 4.097418 TCTTCCTCCTTTCTCCCTACTTG 58.903 47.826 0.00 0.00 0.00 3.16
534 535 4.046103 TCTCTTCCTCCTTTCTCCCTACTT 59.954 45.833 0.00 0.00 0.00 2.24
535 536 3.598782 TCTCTTCCTCCTTTCTCCCTACT 59.401 47.826 0.00 0.00 0.00 2.57
536 537 3.958147 CTCTCTTCCTCCTTTCTCCCTAC 59.042 52.174 0.00 0.00 0.00 3.18
537 538 3.598782 ACTCTCTTCCTCCTTTCTCCCTA 59.401 47.826 0.00 0.00 0.00 3.53
538 539 2.385417 ACTCTCTTCCTCCTTTCTCCCT 59.615 50.000 0.00 0.00 0.00 4.20
539 540 2.827755 ACTCTCTTCCTCCTTTCTCCC 58.172 52.381 0.00 0.00 0.00 4.30
540 541 4.773149 TGTAACTCTCTTCCTCCTTTCTCC 59.227 45.833 0.00 0.00 0.00 3.71
541 542 5.986501 TGTAACTCTCTTCCTCCTTTCTC 57.013 43.478 0.00 0.00 0.00 2.87
542 543 5.279758 GCTTGTAACTCTCTTCCTCCTTTCT 60.280 44.000 0.00 0.00 0.00 2.52
543 544 4.932799 GCTTGTAACTCTCTTCCTCCTTTC 59.067 45.833 0.00 0.00 0.00 2.62
544 545 4.348168 TGCTTGTAACTCTCTTCCTCCTTT 59.652 41.667 0.00 0.00 0.00 3.11
545 546 3.904339 TGCTTGTAACTCTCTTCCTCCTT 59.096 43.478 0.00 0.00 0.00 3.36
546 547 3.511477 TGCTTGTAACTCTCTTCCTCCT 58.489 45.455 0.00 0.00 0.00 3.69
547 548 3.963428 TGCTTGTAACTCTCTTCCTCC 57.037 47.619 0.00 0.00 0.00 4.30
548 549 5.123027 CCATTTGCTTGTAACTCTCTTCCTC 59.877 44.000 0.00 0.00 0.00 3.71
549 550 5.006386 CCATTTGCTTGTAACTCTCTTCCT 58.994 41.667 0.00 0.00 0.00 3.36
550 551 4.156739 CCCATTTGCTTGTAACTCTCTTCC 59.843 45.833 0.00 0.00 0.00 3.46
551 552 4.156739 CCCCATTTGCTTGTAACTCTCTTC 59.843 45.833 0.00 0.00 0.00 2.87
552 553 4.082125 CCCCATTTGCTTGTAACTCTCTT 58.918 43.478 0.00 0.00 0.00 2.85
553 554 3.562176 CCCCCATTTGCTTGTAACTCTCT 60.562 47.826 0.00 0.00 0.00 3.10
554 555 2.755103 CCCCCATTTGCTTGTAACTCTC 59.245 50.000 0.00 0.00 0.00 3.20
555 556 2.378547 TCCCCCATTTGCTTGTAACTCT 59.621 45.455 0.00 0.00 0.00 3.24
556 557 2.492088 GTCCCCCATTTGCTTGTAACTC 59.508 50.000 0.00 0.00 0.00 3.01
557 558 2.110011 AGTCCCCCATTTGCTTGTAACT 59.890 45.455 0.00 0.00 0.00 2.24
558 559 2.231235 CAGTCCCCCATTTGCTTGTAAC 59.769 50.000 0.00 0.00 0.00 2.50
559 560 2.524306 CAGTCCCCCATTTGCTTGTAA 58.476 47.619 0.00 0.00 0.00 2.41
560 561 1.890573 GCAGTCCCCCATTTGCTTGTA 60.891 52.381 0.00 0.00 33.88 2.41
561 562 1.187567 GCAGTCCCCCATTTGCTTGT 61.188 55.000 0.00 0.00 33.88 3.16
562 563 1.593265 GCAGTCCCCCATTTGCTTG 59.407 57.895 0.00 0.00 33.88 4.01
563 564 1.610379 GGCAGTCCCCCATTTGCTT 60.610 57.895 0.00 0.00 36.79 3.91
564 565 2.037847 GGCAGTCCCCCATTTGCT 59.962 61.111 0.00 0.00 36.79 3.91
565 566 3.451894 CGGCAGTCCCCCATTTGC 61.452 66.667 0.00 0.00 35.87 3.68
566 567 2.035626 ACGGCAGTCCCCCATTTG 59.964 61.111 0.00 0.00 0.00 2.32
567 568 2.035626 CACGGCAGTCCCCCATTT 59.964 61.111 0.00 0.00 0.00 2.32
568 569 3.256960 ACACGGCAGTCCCCCATT 61.257 61.111 0.00 0.00 0.00 3.16
569 570 3.717294 GACACGGCAGTCCCCCAT 61.717 66.667 0.00 0.00 32.36 4.00
571 572 3.485346 TTTGACACGGCAGTCCCCC 62.485 63.158 4.84 0.00 37.73 5.40
572 573 2.112297 TTTGACACGGCAGTCCCC 59.888 61.111 4.84 0.00 37.73 4.81
573 574 1.227853 AGTTTGACACGGCAGTCCC 60.228 57.895 4.84 0.00 37.73 4.46
574 575 1.507141 CCAGTTTGACACGGCAGTCC 61.507 60.000 4.84 0.00 37.73 3.85
575 576 1.941812 CCAGTTTGACACGGCAGTC 59.058 57.895 0.51 0.51 38.99 3.51
576 577 2.186826 GCCAGTTTGACACGGCAGT 61.187 57.895 0.00 0.00 41.82 4.40
577 578 2.639286 GCCAGTTTGACACGGCAG 59.361 61.111 0.00 0.00 41.82 4.85
578 579 2.904866 GGCCAGTTTGACACGGCA 60.905 61.111 0.00 0.00 43.14 5.69
579 580 4.025401 CGGCCAGTTTGACACGGC 62.025 66.667 2.24 0.00 41.61 5.68
580 581 4.025401 GCGGCCAGTTTGACACGG 62.025 66.667 2.24 0.00 0.00 4.94
581 582 4.025401 GGCGGCCAGTTTGACACG 62.025 66.667 15.62 0.00 0.00 4.49
582 583 3.670377 GGGCGGCCAGTTTGACAC 61.670 66.667 25.33 0.00 0.00 3.67
583 584 3.842925 GAGGGCGGCCAGTTTGACA 62.843 63.158 31.59 0.00 0.00 3.58
584 585 3.056328 GAGGGCGGCCAGTTTGAC 61.056 66.667 31.59 8.14 0.00 3.18
585 586 3.565214 TGAGGGCGGCCAGTTTGA 61.565 61.111 31.59 0.00 0.00 2.69
586 587 3.365265 GTGAGGGCGGCCAGTTTG 61.365 66.667 31.59 0.00 0.00 2.93
587 588 3.429372 TTGTGAGGGCGGCCAGTTT 62.429 57.895 31.59 9.41 0.00 2.66
588 589 3.850098 CTTGTGAGGGCGGCCAGTT 62.850 63.158 31.59 9.86 0.00 3.16
589 590 4.335647 CTTGTGAGGGCGGCCAGT 62.336 66.667 31.59 10.77 0.00 4.00
592 593 4.344865 TTCCTTGTGAGGGCGGCC 62.345 66.667 22.67 22.67 43.72 6.13
593 594 2.747855 CTTCCTTGTGAGGGCGGC 60.748 66.667 0.00 0.00 43.72 6.53
594 595 2.747855 GCTTCCTTGTGAGGGCGG 60.748 66.667 0.00 0.00 43.72 6.13
595 596 2.037136 CAGCTTCCTTGTGAGGGCG 61.037 63.158 0.00 0.00 43.72 6.13
596 597 0.957888 GACAGCTTCCTTGTGAGGGC 60.958 60.000 0.00 0.00 43.72 5.19
597 598 0.322008 GGACAGCTTCCTTGTGAGGG 60.322 60.000 7.46 0.00 43.72 4.30
598 599 3.239861 GGACAGCTTCCTTGTGAGG 57.760 57.895 7.46 0.00 41.95 3.86
606 607 5.072464 AGGATAAATAAGGAGGACAGCTTCC 59.928 44.000 6.79 6.79 46.33 3.46
607 608 6.181206 AGGATAAATAAGGAGGACAGCTTC 57.819 41.667 0.00 0.00 0.00 3.86
608 609 6.043358 GGTAGGATAAATAAGGAGGACAGCTT 59.957 42.308 0.00 0.00 0.00 3.74
609 610 5.544562 GGTAGGATAAATAAGGAGGACAGCT 59.455 44.000 0.00 0.00 0.00 4.24
610 611 5.544562 AGGTAGGATAAATAAGGAGGACAGC 59.455 44.000 0.00 0.00 0.00 4.40
611 612 6.071840 CGAGGTAGGATAAATAAGGAGGACAG 60.072 46.154 0.00 0.00 0.00 3.51
612 613 5.773680 CGAGGTAGGATAAATAAGGAGGACA 59.226 44.000 0.00 0.00 0.00 4.02
613 614 5.774184 ACGAGGTAGGATAAATAAGGAGGAC 59.226 44.000 0.00 0.00 0.00 3.85
614 615 5.773680 CACGAGGTAGGATAAATAAGGAGGA 59.226 44.000 0.00 0.00 0.00 3.71
615 616 5.047235 CCACGAGGTAGGATAAATAAGGAGG 60.047 48.000 0.00 0.00 0.00 4.30
616 617 6.026947 CCACGAGGTAGGATAAATAAGGAG 57.973 45.833 0.00 0.00 0.00 3.69
632 633 1.026718 GCAAGGAATGGACCACGAGG 61.027 60.000 0.00 0.00 42.21 4.63
633 634 1.026718 GGCAAGGAATGGACCACGAG 61.027 60.000 0.00 0.00 0.00 4.18
634 635 1.002624 GGCAAGGAATGGACCACGA 60.003 57.895 0.00 0.00 0.00 4.35
635 636 1.303236 TGGCAAGGAATGGACCACG 60.303 57.895 0.00 0.00 0.00 4.94
636 637 1.598701 GCTGGCAAGGAATGGACCAC 61.599 60.000 0.00 0.00 0.00 4.16
637 638 1.304381 GCTGGCAAGGAATGGACCA 60.304 57.895 0.00 0.00 0.00 4.02
638 639 2.409870 CGCTGGCAAGGAATGGACC 61.410 63.158 0.00 0.00 0.00 4.46
639 640 0.392461 TACGCTGGCAAGGAATGGAC 60.392 55.000 0.00 0.00 0.00 4.02
640 641 0.107703 CTACGCTGGCAAGGAATGGA 60.108 55.000 0.00 0.00 0.00 3.41
641 642 1.718757 GCTACGCTGGCAAGGAATGG 61.719 60.000 0.00 0.00 0.00 3.16
642 643 1.723870 GCTACGCTGGCAAGGAATG 59.276 57.895 0.00 0.00 0.00 2.67
643 644 1.815421 CGCTACGCTGGCAAGGAAT 60.815 57.895 0.00 0.00 0.00 3.01
644 645 2.434185 CGCTACGCTGGCAAGGAA 60.434 61.111 0.00 0.00 0.00 3.36
671 672 3.075005 TACAGGAGGGTCAGGCGC 61.075 66.667 0.00 0.00 0.00 6.53
672 673 2.427245 CCTACAGGAGGGTCAGGCG 61.427 68.421 0.00 0.00 42.39 5.52
673 674 2.736826 GCCTACAGGAGGGTCAGGC 61.737 68.421 0.00 0.00 46.81 4.85
674 675 2.066999 GGCCTACAGGAGGGTCAGG 61.067 68.421 0.00 0.00 46.81 3.86
675 676 2.066999 GGGCCTACAGGAGGGTCAG 61.067 68.421 0.84 0.00 46.81 3.51
676 677 2.040606 GGGCCTACAGGAGGGTCA 59.959 66.667 0.84 0.00 46.81 4.02
677 678 2.768769 GGGGCCTACAGGAGGGTC 60.769 72.222 0.84 0.00 46.81 4.46
678 679 4.798682 CGGGGCCTACAGGAGGGT 62.799 72.222 0.84 0.00 46.81 4.34
679 680 4.475444 TCGGGGCCTACAGGAGGG 62.475 72.222 0.84 0.00 46.81 4.30
681 682 3.528370 CGTCGGGGCCTACAGGAG 61.528 72.222 0.84 0.00 37.39 3.69
682 683 4.371417 ACGTCGGGGCCTACAGGA 62.371 66.667 0.84 0.00 37.39 3.86
683 684 3.834799 GACGTCGGGGCCTACAGG 61.835 72.222 0.84 0.00 38.53 4.00
684 685 3.064987 CTGACGTCGGGGCCTACAG 62.065 68.421 16.99 0.00 0.00 2.74
685 686 3.066190 CTGACGTCGGGGCCTACA 61.066 66.667 16.99 0.00 0.00 2.74
686 687 3.066814 ACTGACGTCGGGGCCTAC 61.067 66.667 27.33 0.94 0.00 3.18
687 688 3.066190 CACTGACGTCGGGGCCTA 61.066 66.667 27.33 0.00 0.00 3.93
691 692 4.003788 AAGCCACTGACGTCGGGG 62.004 66.667 27.33 23.98 0.00 5.73
692 693 2.738521 CAAGCCACTGACGTCGGG 60.739 66.667 27.33 20.41 0.00 5.14
693 694 1.594293 AACAAGCCACTGACGTCGG 60.594 57.895 22.81 22.81 0.00 4.79
694 695 0.874175 TCAACAAGCCACTGACGTCG 60.874 55.000 11.62 8.41 0.00 5.12
695 696 0.582005 GTCAACAAGCCACTGACGTC 59.418 55.000 9.11 9.11 30.96 4.34
696 697 0.178068 AGTCAACAAGCCACTGACGT 59.822 50.000 0.00 0.00 43.41 4.34
697 698 0.583438 CAGTCAACAAGCCACTGACG 59.417 55.000 0.00 0.00 43.41 4.35
698 699 0.947244 CCAGTCAACAAGCCACTGAC 59.053 55.000 0.00 0.00 40.07 3.51
699 700 0.179020 CCCAGTCAACAAGCCACTGA 60.179 55.000 0.00 0.00 40.07 3.41
700 701 0.466189 ACCCAGTCAACAAGCCACTG 60.466 55.000 0.00 0.00 37.81 3.66
701 702 0.179018 GACCCAGTCAACAAGCCACT 60.179 55.000 0.00 0.00 32.09 4.00
702 703 0.179018 AGACCCAGTCAACAAGCCAC 60.179 55.000 0.00 0.00 34.60 5.01
703 704 0.550914 AAGACCCAGTCAACAAGCCA 59.449 50.000 0.00 0.00 34.60 4.75
704 705 0.954452 CAAGACCCAGTCAACAAGCC 59.046 55.000 0.00 0.00 34.60 4.35
705 706 0.954452 CCAAGACCCAGTCAACAAGC 59.046 55.000 0.00 0.00 34.60 4.01
706 707 0.954452 GCCAAGACCCAGTCAACAAG 59.046 55.000 0.00 0.00 34.60 3.16
707 708 0.550914 AGCCAAGACCCAGTCAACAA 59.449 50.000 0.00 0.00 34.60 2.83
708 709 0.179020 CAGCCAAGACCCAGTCAACA 60.179 55.000 0.00 0.00 34.60 3.33
709 710 1.518903 GCAGCCAAGACCCAGTCAAC 61.519 60.000 0.00 0.00 34.60 3.18
710 711 1.228245 GCAGCCAAGACCCAGTCAA 60.228 57.895 0.00 0.00 34.60 3.18
711 712 2.431683 GCAGCCAAGACCCAGTCA 59.568 61.111 0.00 0.00 34.60 3.41
712 713 2.360475 GGCAGCCAAGACCCAGTC 60.360 66.667 6.55 0.00 0.00 3.51
713 714 3.971702 GGGCAGCCAAGACCCAGT 61.972 66.667 15.19 0.00 43.64 4.00
714 715 3.655211 AGGGCAGCCAAGACCCAG 61.655 66.667 15.19 0.00 46.88 4.45
715 716 3.970410 CAGGGCAGCCAAGACCCA 61.970 66.667 15.19 0.00 46.88 4.51
716 717 4.748144 CCAGGGCAGCCAAGACCC 62.748 72.222 15.19 0.00 44.62 4.46
725 726 4.864334 GGATGACGGCCAGGGCAG 62.864 72.222 14.59 10.97 44.11 4.85
727 728 4.554036 GAGGATGACGGCCAGGGC 62.554 72.222 2.24 1.81 41.06 5.19
728 729 2.765807 AGAGGATGACGGCCAGGG 60.766 66.667 2.24 0.00 0.00 4.45
729 730 1.043116 TACAGAGGATGACGGCCAGG 61.043 60.000 2.24 0.00 0.00 4.45
730 731 0.824109 TTACAGAGGATGACGGCCAG 59.176 55.000 2.24 0.00 0.00 4.85
731 732 0.535335 GTTACAGAGGATGACGGCCA 59.465 55.000 2.24 0.00 0.00 5.36
732 733 0.179081 GGTTACAGAGGATGACGGCC 60.179 60.000 0.00 0.00 0.00 6.13
733 734 0.527817 CGGTTACAGAGGATGACGGC 60.528 60.000 0.00 0.00 0.00 5.68
734 735 0.102481 CCGGTTACAGAGGATGACGG 59.898 60.000 0.00 0.00 32.58 4.79
735 736 0.527817 GCCGGTTACAGAGGATGACG 60.528 60.000 1.90 0.00 0.00 4.35
736 737 0.824759 AGCCGGTTACAGAGGATGAC 59.175 55.000 1.90 0.00 0.00 3.06
737 738 1.112113 GAGCCGGTTACAGAGGATGA 58.888 55.000 1.90 0.00 0.00 2.92
738 739 0.249073 CGAGCCGGTTACAGAGGATG 60.249 60.000 1.90 0.00 0.00 3.51
739 740 1.392710 CCGAGCCGGTTACAGAGGAT 61.393 60.000 1.90 0.00 42.73 3.24
740 741 2.050350 CCGAGCCGGTTACAGAGGA 61.050 63.158 1.90 0.00 42.73 3.71
741 742 2.494918 CCGAGCCGGTTACAGAGG 59.505 66.667 1.90 0.00 42.73 3.69
751 752 1.148157 CTGTTAGCATCACCGAGCCG 61.148 60.000 0.00 0.00 0.00 5.52
752 753 0.175760 TCTGTTAGCATCACCGAGCC 59.824 55.000 0.00 0.00 0.00 4.70
753 754 1.134965 AGTCTGTTAGCATCACCGAGC 60.135 52.381 0.00 0.00 0.00 5.03
754 755 2.534298 CAGTCTGTTAGCATCACCGAG 58.466 52.381 0.00 0.00 0.00 4.63
755 756 1.404181 GCAGTCTGTTAGCATCACCGA 60.404 52.381 0.93 0.00 0.00 4.69
756 757 1.002366 GCAGTCTGTTAGCATCACCG 58.998 55.000 0.93 0.00 0.00 4.94
757 758 2.093764 AGAGCAGTCTGTTAGCATCACC 60.094 50.000 0.93 0.00 0.00 4.02
758 759 2.928757 CAGAGCAGTCTGTTAGCATCAC 59.071 50.000 0.93 0.00 44.72 3.06
759 760 3.242549 CAGAGCAGTCTGTTAGCATCA 57.757 47.619 0.93 0.00 44.72 3.07
769 770 2.297597 GTGTAGGTTGTCAGAGCAGTCT 59.702 50.000 0.00 0.00 0.00 3.24
770 771 2.035961 TGTGTAGGTTGTCAGAGCAGTC 59.964 50.000 0.00 0.00 0.00 3.51
771 772 2.036475 CTGTGTAGGTTGTCAGAGCAGT 59.964 50.000 0.00 0.00 0.00 4.40
772 773 2.297315 TCTGTGTAGGTTGTCAGAGCAG 59.703 50.000 0.00 0.00 33.77 4.24
773 774 2.316108 TCTGTGTAGGTTGTCAGAGCA 58.684 47.619 0.00 0.00 33.77 4.26
804 805 2.102946 GCTGCGGCATGCTAAACC 59.897 61.111 18.92 0.00 46.63 3.27
823 824 1.137825 GCGACTTCGGGAGACAGAG 59.862 63.158 0.02 0.00 39.59 3.35
853 854 4.194640 CTCGGATGCTTTATATGGATGGG 58.805 47.826 0.00 0.00 0.00 4.00
1286 2903 2.159627 AGTCAAACAAATGCCGATCGAC 59.840 45.455 18.66 5.29 0.00 4.20
1445 5219 1.674980 GACGACGGACAGGAGGACT 60.675 63.158 0.00 0.00 0.00 3.85
1543 5326 1.147824 CGCCTGGCCTTCTCATCAT 59.852 57.895 14.12 0.00 0.00 2.45
1547 5330 4.399395 CAGCGCCTGGCCTTCTCA 62.399 66.667 14.12 0.00 45.17 3.27
1615 5398 1.607756 AGCTCCTCGAACAGCTCCA 60.608 57.895 11.22 0.00 42.60 3.86
1640 5423 2.499205 CCACTAATCGCCGCCTCA 59.501 61.111 0.00 0.00 0.00 3.86
1651 5434 2.434331 GTGCCACTGCCCCACTAA 59.566 61.111 0.00 0.00 36.33 2.24
1755 5538 4.899687 CGCGGTGCATGCATGAGC 62.900 66.667 30.64 25.37 42.57 4.26
1756 5539 2.540228 ATCGCGGTGCATGCATGAG 61.540 57.895 30.64 20.29 0.00 2.90
1757 5540 2.514360 ATCGCGGTGCATGCATGA 60.514 55.556 30.64 18.87 0.00 3.07
1782 5569 8.030106 ACTTAACTTGTGCTCAGTAGTCTTATC 58.970 37.037 0.00 0.00 0.00 1.75
1827 5614 3.393089 AGATACTCAATGGACATCGCC 57.607 47.619 0.00 0.00 0.00 5.54
1828 5615 5.127693 ACTAGATACTCAATGGACATCGC 57.872 43.478 0.00 0.00 0.00 4.58
1912 5704 7.065803 CGGCGTCCATAAAATAAGGATCATATT 59.934 37.037 0.00 0.00 33.33 1.28
1954 5746 2.432300 CGGACTCCCTAACGCCCAT 61.432 63.158 0.00 0.00 0.00 4.00
2015 5807 6.094061 GCTAATTATTTTGCCCACACGTAAA 58.906 36.000 0.00 0.00 0.00 2.01
2116 5909 1.687123 GGTACGAGGCCTGACATACAT 59.313 52.381 12.00 0.00 0.00 2.29
2117 5910 1.108776 GGTACGAGGCCTGACATACA 58.891 55.000 12.00 0.00 0.00 2.29
2231 6024 0.739813 GGCAACCGTAGTTCAGCGAT 60.740 55.000 0.00 0.00 32.45 4.58
2272 6065 1.696063 ACTGCAGTTGAGCAACCATT 58.304 45.000 15.25 0.00 45.13 3.16
2502 6295 3.572255 ACCGAGTTGCCATATGTTTTTGT 59.428 39.130 1.24 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.