Multiple sequence alignment - TraesCS6A01G283700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G283700 chr6A 100.000 5937 0 0 1 5937 514889335 514895271 0.000000e+00 10964
1 TraesCS6A01G283700 chr6D 92.349 2954 115 43 2918 5838 372879623 372882498 0.000000e+00 4100
2 TraesCS6A01G283700 chr6D 87.097 1705 104 42 1211 2899 372877129 372878733 0.000000e+00 1823
3 TraesCS6A01G283700 chr6D 93.072 1198 42 18 1 1180 372875964 372877138 0.000000e+00 1714
4 TraesCS6A01G283700 chr6B 94.031 1843 65 23 3194 5028 559040381 559038576 0.000000e+00 2752
5 TraesCS6A01G283700 chr6B 87.675 1712 114 41 1211 2899 559042516 559040879 0.000000e+00 1903
6 TraesCS6A01G283700 chr6B 91.622 931 53 9 5012 5934 559024036 559023123 0.000000e+00 1264
7 TraesCS6A01G283700 chr6B 90.049 412 27 8 385 792 559063847 559063446 6.820000e-144 521
8 TraesCS6A01G283700 chr6B 89.051 411 14 12 777 1180 559042892 559042506 1.160000e-131 481
9 TraesCS6A01G283700 chr6B 94.158 291 7 5 3 289 559064388 559064104 9.140000e-118 435
10 TraesCS6A01G283700 chr6B 88.095 210 12 8 2918 3119 559040644 559040440 2.770000e-58 237
11 TraesCS6A01G283700 chr7A 79.258 1321 239 29 3626 4933 186542513 186541215 0.000000e+00 889


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G283700 chr6A 514889335 514895271 5936 False 10964.000000 10964 100.000000 1 5937 1 chr6A.!!$F1 5936
1 TraesCS6A01G283700 chr6D 372875964 372882498 6534 False 2545.666667 4100 90.839333 1 5838 3 chr6D.!!$F1 5837
2 TraesCS6A01G283700 chr6B 559038576 559042892 4316 True 1343.250000 2752 89.713000 777 5028 4 chr6B.!!$R2 4251
3 TraesCS6A01G283700 chr6B 559023123 559024036 913 True 1264.000000 1264 91.622000 5012 5934 1 chr6B.!!$R1 922
4 TraesCS6A01G283700 chr6B 559063446 559064388 942 True 478.000000 521 92.103500 3 792 2 chr6B.!!$R3 789
5 TraesCS6A01G283700 chr7A 186541215 186542513 1298 True 889.000000 889 79.258000 3626 4933 1 chr7A.!!$R1 1307

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 867 0.036577 CAGAGTCTGAACAGGCAGGG 60.037 60.0 15.46 0.0 34.98 4.45 F
1754 1954 0.260230 TCCACCAGGAGGCAAAACAA 59.740 50.0 0.00 0.0 39.61 2.83 F
2359 2573 0.028110 GGAGCGTGGAATGATTTCGC 59.972 55.0 12.60 12.6 45.82 4.70 F
3419 4551 0.041839 ACGATACGATACGCACGACC 60.042 55.0 0.00 0.0 34.70 4.79 F
3650 4783 0.106708 TTTCGAGCACCTGAACAGCT 59.893 50.0 0.00 0.0 42.17 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2277 2491 0.172578 CAGAACTGACGCCGTCCATA 59.827 55.000 15.60 0.0 0.00 2.74 R
3060 4168 0.029567 GATCGCGTCGATGAGAAGGT 59.970 55.000 15.17 0.0 47.00 3.50 R
3518 4650 0.099436 CGGATTAGTTTGCTGCTGCC 59.901 55.000 13.47 0.0 38.71 4.85 R
4669 5805 1.655329 GAGGATGGAGTAGGCGTCG 59.345 63.158 0.00 0.0 0.00 5.12 R
5582 6731 2.427320 GGAGCGGCATCATAGGCA 59.573 61.111 1.45 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.612620 AAAAGAGCAAATTAAGTAGAATTCGTG 57.387 29.630 0.00 0.00 0.00 4.35
130 131 6.495526 TCATGACATGGGTCTAATATCGGTTA 59.504 38.462 15.37 0.00 44.61 2.85
182 187 6.017605 CCATGATTATCAAGCAAGACTACACC 60.018 42.308 0.00 0.00 0.00 4.16
221 226 0.253044 TGCCAGCCACCATAGAGTTC 59.747 55.000 0.00 0.00 0.00 3.01
368 461 3.813596 GCTAACCACTGCGATGGG 58.186 61.111 10.57 0.00 44.81 4.00
426 592 1.103987 TGGTTGCGCTTAACTGCCAA 61.104 50.000 9.73 0.00 0.00 4.52
469 635 3.645157 GAATGTGCGCACCGAACCG 62.645 63.158 35.72 0.00 33.94 4.44
502 668 2.605580 GCTACACACCAAAGCAGCTTTC 60.606 50.000 17.97 0.00 36.26 2.62
506 672 2.259511 CCAAAGCAGCTTTCGCCC 59.740 61.111 17.97 0.00 36.60 6.13
512 678 2.740714 GCAGCTTTCGCCCAGTACG 61.741 63.158 0.00 0.00 36.60 3.67
513 679 1.374252 CAGCTTTCGCCCAGTACGT 60.374 57.895 0.00 0.00 36.60 3.57
514 680 0.108992 CAGCTTTCGCCCAGTACGTA 60.109 55.000 0.00 0.00 36.60 3.57
515 681 0.108945 AGCTTTCGCCCAGTACGTAC 60.109 55.000 18.10 18.10 36.60 3.67
516 682 1.080435 GCTTTCGCCCAGTACGTACC 61.080 60.000 21.80 5.89 0.00 3.34
517 683 0.244450 CTTTCGCCCAGTACGTACCA 59.756 55.000 21.80 0.00 0.00 3.25
657 827 5.709164 GGTGCAGAATATATTCAGATGCCTT 59.291 40.000 24.35 5.20 39.23 4.35
690 866 0.673022 GCAGAGTCTGAACAGGCAGG 60.673 60.000 24.55 0.00 34.98 4.85
691 867 0.036577 CAGAGTCTGAACAGGCAGGG 60.037 60.000 15.46 0.00 34.98 4.45
692 868 1.376553 GAGTCTGAACAGGCAGGGC 60.377 63.158 9.07 0.00 34.98 5.19
693 869 1.835927 GAGTCTGAACAGGCAGGGCT 61.836 60.000 9.07 0.00 34.98 5.19
694 870 1.673665 GTCTGAACAGGCAGGGCTG 60.674 63.158 19.84 19.84 36.55 4.85
711 887 2.484203 GCAAGTAGCAGCAGCAGC 59.516 61.111 3.17 0.46 45.49 5.25
712 888 2.330372 GCAAGTAGCAGCAGCAGCA 61.330 57.895 12.92 0.00 45.49 4.41
751 927 5.006358 GTCGGTCACATATCATTGTGGTAAC 59.994 44.000 4.89 0.00 45.63 2.50
873 1051 2.617308 GGCGGGGAAACTCTATAAAAGC 59.383 50.000 0.00 0.00 0.00 3.51
874 1052 2.617308 GCGGGGAAACTCTATAAAAGCC 59.383 50.000 0.00 0.00 0.00 4.35
974 1152 3.700350 AGGGGGAGAGAGGGGGTG 61.700 72.222 0.00 0.00 0.00 4.61
983 1161 1.719378 AGAGAGGGGGTGAGAAGAAGA 59.281 52.381 0.00 0.00 0.00 2.87
1120 1298 6.318900 GCAAGTGCAGGGTATATATAATTCCC 59.681 42.308 8.32 8.32 41.59 3.97
1163 1349 6.168270 AGACTGGCTAGATTTCTTGGATAC 57.832 41.667 3.17 0.00 0.00 2.24
1170 1356 7.051000 GGCTAGATTTCTTGGATACTGTTCTT 58.949 38.462 0.00 0.00 37.61 2.52
1171 1357 7.011857 GGCTAGATTTCTTGGATACTGTTCTTG 59.988 40.741 0.00 0.00 37.61 3.02
1172 1358 7.550906 GCTAGATTTCTTGGATACTGTTCTTGT 59.449 37.037 0.00 0.00 37.61 3.16
1173 1359 7.678947 AGATTTCTTGGATACTGTTCTTGTG 57.321 36.000 0.00 0.00 37.61 3.33
1174 1360 7.227156 AGATTTCTTGGATACTGTTCTTGTGT 58.773 34.615 0.00 0.00 37.61 3.72
1175 1361 6.618287 TTTCTTGGATACTGTTCTTGTGTG 57.382 37.500 0.00 0.00 37.61 3.82
1176 1362 5.290493 TCTTGGATACTGTTCTTGTGTGT 57.710 39.130 0.00 0.00 37.61 3.72
1177 1363 5.056480 TCTTGGATACTGTTCTTGTGTGTG 58.944 41.667 0.00 0.00 37.61 3.82
1178 1364 4.415881 TGGATACTGTTCTTGTGTGTGT 57.584 40.909 0.00 0.00 37.61 3.72
1179 1365 4.126437 TGGATACTGTTCTTGTGTGTGTG 58.874 43.478 0.00 0.00 37.61 3.82
1180 1366 4.127171 GGATACTGTTCTTGTGTGTGTGT 58.873 43.478 0.00 0.00 0.00 3.72
1181 1367 4.024893 GGATACTGTTCTTGTGTGTGTGTG 60.025 45.833 0.00 0.00 0.00 3.82
1182 1368 2.778299 ACTGTTCTTGTGTGTGTGTGT 58.222 42.857 0.00 0.00 0.00 3.72
1183 1369 2.483877 ACTGTTCTTGTGTGTGTGTGTG 59.516 45.455 0.00 0.00 0.00 3.82
1184 1370 2.483877 CTGTTCTTGTGTGTGTGTGTGT 59.516 45.455 0.00 0.00 0.00 3.72
1185 1371 2.225255 TGTTCTTGTGTGTGTGTGTGTG 59.775 45.455 0.00 0.00 0.00 3.82
1186 1372 2.177394 TCTTGTGTGTGTGTGTGTGT 57.823 45.000 0.00 0.00 0.00 3.72
1187 1373 1.803555 TCTTGTGTGTGTGTGTGTGTG 59.196 47.619 0.00 0.00 0.00 3.82
1188 1374 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
1189 1375 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1190 1376 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1191 1377 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1192 1378 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1193 1379 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1194 1380 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1195 1381 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1196 1382 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1197 1383 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1198 1384 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1199 1385 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1200 1386 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1201 1387 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1202 1388 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1203 1389 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1204 1390 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1205 1391 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1206 1392 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1207 1393 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1208 1394 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1209 1395 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1220 1407 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1221 1408 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1242 1429 3.318275 TGTAATTGCTTTGCCGTTGGTTA 59.682 39.130 0.00 0.00 0.00 2.85
1277 1464 3.565482 GCAACTGGATCAAAGACAACTGA 59.435 43.478 0.00 0.00 0.00 3.41
1279 1466 5.618640 GCAACTGGATCAAAGACAACTGATC 60.619 44.000 0.00 3.91 44.80 2.92
1282 1469 5.221803 ACTGGATCAAAGACAACTGATCTGT 60.222 40.000 10.85 0.00 44.87 3.41
1300 1487 5.499139 TCTGTTGACTTGCTAAAAACAGG 57.501 39.130 12.44 0.00 44.94 4.00
1301 1488 4.338118 TCTGTTGACTTGCTAAAAACAGGG 59.662 41.667 12.44 0.00 44.94 4.45
1322 1509 5.608437 AGGGGTACATGATGACTTGACATAT 59.392 40.000 0.00 0.00 0.00 1.78
1323 1510 6.101734 AGGGGTACATGATGACTTGACATATT 59.898 38.462 0.00 0.00 0.00 1.28
1324 1511 7.292356 AGGGGTACATGATGACTTGACATATTA 59.708 37.037 0.00 0.00 0.00 0.98
1325 1512 7.387948 GGGGTACATGATGACTTGACATATTAC 59.612 40.741 0.00 0.00 0.00 1.89
1362 1549 5.497474 TGGTTCAGTAGGAATAGAAAAGGC 58.503 41.667 0.00 0.00 37.93 4.35
1366 1553 7.993758 GGTTCAGTAGGAATAGAAAAGGCTATT 59.006 37.037 0.00 0.00 42.23 1.73
1367 1554 8.831550 GTTCAGTAGGAATAGAAAAGGCTATTG 58.168 37.037 0.00 0.00 40.25 1.90
1369 1556 8.204836 TCAGTAGGAATAGAAAAGGCTATTGAC 58.795 37.037 0.00 0.00 40.25 3.18
1381 1568 5.012328 AGGCTATTGACTTATATAGCGCC 57.988 43.478 2.29 0.00 46.46 6.53
1383 1570 5.892119 AGGCTATTGACTTATATAGCGCCTA 59.108 40.000 2.29 0.00 46.46 3.93
1386 1573 7.259161 GCTATTGACTTATATAGCGCCTAAGT 58.741 38.462 17.11 17.11 39.68 2.24
1442 1630 6.043706 CAGTCCTTAGGATGGGTTAATCTGAT 59.956 42.308 3.52 0.00 32.73 2.90
1449 1637 6.302269 AGGATGGGTTAATCTGATGATGTTC 58.698 40.000 0.00 0.00 32.44 3.18
1515 1711 3.060602 GACTCCTGAAACTGAACCGAAG 58.939 50.000 0.00 0.00 0.00 3.79
1525 1721 4.248691 ACTGAACCGAAGTAGTAACACC 57.751 45.455 0.00 0.00 0.00 4.16
1584 1780 3.778718 CGTATGCATCACGCTGTAAAAAC 59.221 43.478 0.19 0.00 43.06 2.43
1586 1782 3.913548 TGCATCACGCTGTAAAAACAT 57.086 38.095 0.00 0.00 43.06 2.71
1601 1797 2.531522 AACATTTTCCAACCTGCAGC 57.468 45.000 8.66 0.00 0.00 5.25
1636 1832 6.313164 GCCTGTAACTGTCAAAGATAGTAACC 59.687 42.308 0.00 0.00 33.04 2.85
1690 1886 2.250924 ACTTCAAAAGGGCAATCCAGG 58.749 47.619 0.00 0.00 38.24 4.45
1723 1923 0.681243 CAGTAGCCCCTCCCTTTTGC 60.681 60.000 0.00 0.00 0.00 3.68
1752 1952 4.920828 TCCACCAGGAGGCAAAAC 57.079 55.556 0.00 0.00 39.61 2.43
1754 1954 0.260230 TCCACCAGGAGGCAAAACAA 59.740 50.000 0.00 0.00 39.61 2.83
1755 1955 1.133199 TCCACCAGGAGGCAAAACAAT 60.133 47.619 0.00 0.00 39.61 2.71
1757 1957 0.681175 ACCAGGAGGCAAAACAATGC 59.319 50.000 0.00 0.00 45.67 3.56
1758 1958 0.971386 CCAGGAGGCAAAACAATGCT 59.029 50.000 0.00 0.00 45.68 3.79
1759 1959 2.170166 CCAGGAGGCAAAACAATGCTA 58.830 47.619 0.00 0.00 45.68 3.49
1760 1960 2.165030 CCAGGAGGCAAAACAATGCTAG 59.835 50.000 0.00 0.00 45.68 3.42
1762 1962 4.009675 CAGGAGGCAAAACAATGCTAGTA 58.990 43.478 0.00 0.00 45.68 1.82
1765 1965 6.318648 CAGGAGGCAAAACAATGCTAGTATAA 59.681 38.462 0.00 0.00 45.68 0.98
1766 1966 6.318900 AGGAGGCAAAACAATGCTAGTATAAC 59.681 38.462 0.00 0.00 45.68 1.89
1767 1967 6.451064 AGGCAAAACAATGCTAGTATAACC 57.549 37.500 0.00 0.00 45.68 2.85
1778 1978 4.141801 TGCTAGTATAACCACCACCATGTC 60.142 45.833 0.00 0.00 0.00 3.06
1811 2011 2.502213 TGACCGGTAGATTACGCATG 57.498 50.000 7.34 0.00 0.00 4.06
1820 2020 0.657840 GATTACGCATGCTTTCCGCT 59.342 50.000 17.13 0.00 40.11 5.52
1854 2054 3.119096 GCCAGGACGGAAAGCGTC 61.119 66.667 0.00 0.00 36.56 5.19
1855 2055 2.657237 CCAGGACGGAAAGCGTCT 59.343 61.111 0.00 0.00 36.56 4.18
1856 2056 1.446272 CCAGGACGGAAAGCGTCTC 60.446 63.158 0.00 0.00 36.56 3.36
1912 2116 3.561213 CGCCTCATCACAGCAGCG 61.561 66.667 0.00 0.00 37.39 5.18
1913 2117 2.435586 GCCTCATCACAGCAGCGT 60.436 61.111 0.00 0.00 0.00 5.07
1914 2118 2.459442 GCCTCATCACAGCAGCGTC 61.459 63.158 0.00 0.00 0.00 5.19
1915 2119 2.163390 CCTCATCACAGCAGCGTCG 61.163 63.158 0.00 0.00 0.00 5.12
1916 2120 2.796425 CTCATCACAGCAGCGTCGC 61.796 63.158 9.80 9.80 0.00 5.19
1921 2125 1.008875 TCACAGCAGCGTCGCTTTAG 61.009 55.000 19.06 12.25 41.38 1.85
1949 2153 4.910585 CCCCGCTAATCGCCGCTT 62.911 66.667 0.00 0.00 36.73 4.68
1950 2154 2.028484 CCCGCTAATCGCCGCTTA 59.972 61.111 0.00 0.00 36.73 3.09
2042 2249 5.923114 CCGATATAGATAGAATTGATGGCCG 59.077 44.000 0.00 0.00 0.00 6.13
2064 2271 1.337071 TGAGTTAGTGGCCGATCGATC 59.663 52.381 18.66 15.68 0.00 3.69
2118 2325 1.462283 GCATCGATCGGTCCATCAATG 59.538 52.381 16.41 9.83 0.00 2.82
2243 2455 2.483013 CCAGGATGTATACCCACACACG 60.483 54.545 0.00 0.00 0.00 4.49
2245 2457 1.205657 GATGTATACCCACACACGCG 58.794 55.000 3.53 3.53 0.00 6.01
2248 2460 1.446445 TATACCCACACACGCGCAC 60.446 57.895 5.73 0.00 0.00 5.34
2263 2477 2.805353 CACGGAGGTGCGTTCTCG 60.805 66.667 0.00 0.00 37.35 4.04
2276 2490 0.600255 GTTCTCGGTGGTGTCTGGTG 60.600 60.000 0.00 0.00 0.00 4.17
2277 2491 1.046472 TTCTCGGTGGTGTCTGGTGT 61.046 55.000 0.00 0.00 0.00 4.16
2283 2497 1.338769 GGTGGTGTCTGGTGTATGGAC 60.339 57.143 0.00 0.00 0.00 4.02
2284 2498 0.606096 TGGTGTCTGGTGTATGGACG 59.394 55.000 0.00 0.00 33.21 4.79
2285 2499 0.108329 GGTGTCTGGTGTATGGACGG 60.108 60.000 0.00 0.00 33.21 4.79
2291 2505 1.518572 GGTGTATGGACGGCGTCAG 60.519 63.158 37.13 0.00 33.68 3.51
2356 2570 2.513753 TGTTGGAGCGTGGAATGATTT 58.486 42.857 0.00 0.00 0.00 2.17
2357 2571 2.487762 TGTTGGAGCGTGGAATGATTTC 59.512 45.455 0.00 0.00 0.00 2.17
2358 2572 1.368641 TGGAGCGTGGAATGATTTCG 58.631 50.000 0.00 0.00 32.28 3.46
2359 2573 0.028110 GGAGCGTGGAATGATTTCGC 59.972 55.000 12.60 12.60 45.82 4.70
2360 2574 4.268655 GCGTGGAATGATTTCGCG 57.731 55.556 14.66 14.66 37.74 5.87
2362 2576 1.977594 GCGTGGAATGATTTCGCGGT 61.978 55.000 19.68 0.00 37.74 5.68
2363 2577 1.282817 CGTGGAATGATTTCGCGGTA 58.717 50.000 11.40 0.00 32.28 4.02
2364 2578 1.005347 CGTGGAATGATTTCGCGGTAC 60.005 52.381 11.40 0.00 32.28 3.34
2400 2614 4.162690 GCTGGGGCTGTAGGTCCG 62.163 72.222 0.00 0.00 41.51 4.79
2411 2625 4.621269 AGGTCCGTCCTGAACACT 57.379 55.556 0.00 0.00 46.19 3.55
2412 2626 2.050269 AGGTCCGTCCTGAACACTG 58.950 57.895 0.00 0.00 46.19 3.66
2424 2638 3.055819 CCTGAACACTGGCTTAGCTTAGA 60.056 47.826 3.38 0.00 0.00 2.10
2429 2643 6.154534 TGAACACTGGCTTAGCTTAGATTAGA 59.845 38.462 3.38 0.27 0.00 2.10
2491 2706 2.824936 TCCAATTAATGCAGTGGTGGTG 59.175 45.455 10.95 0.00 32.68 4.17
2574 2793 4.215613 GTGTTCCTAATGGTCACCTTTCAC 59.784 45.833 0.00 0.00 35.29 3.18
2642 2862 3.753272 GGCATGGCATGTTATGGTAGTAG 59.247 47.826 26.94 0.00 0.00 2.57
2674 2894 3.084786 AGGCACTAAAAGTCATGGAAGC 58.915 45.455 0.00 0.00 36.02 3.86
2705 2929 1.922447 TGACTGGTGGCCCTTAATCAT 59.078 47.619 0.00 0.00 0.00 2.45
2706 2930 2.301346 GACTGGTGGCCCTTAATCATG 58.699 52.381 0.00 0.00 0.00 3.07
2707 2931 1.063717 ACTGGTGGCCCTTAATCATGG 60.064 52.381 0.00 0.00 0.00 3.66
2708 2932 0.396974 TGGTGGCCCTTAATCATGGC 60.397 55.000 0.00 0.00 44.59 4.40
2731 2955 1.666209 GGCAACCACCCCAATCATCG 61.666 60.000 0.00 0.00 0.00 3.84
2735 2959 2.057137 ACCACCCCAATCATCGATTG 57.943 50.000 9.30 9.30 46.14 2.67
2769 2995 3.927142 GCACTGCTGTTAACTGTACCTAG 59.073 47.826 13.27 7.48 0.00 3.02
2770 2996 3.927142 CACTGCTGTTAACTGTACCTAGC 59.073 47.826 13.27 9.14 0.00 3.42
2771 2997 3.833070 ACTGCTGTTAACTGTACCTAGCT 59.167 43.478 13.27 0.00 0.00 3.32
2798 3024 1.096386 TGCCAACCAAAAGCGTACGT 61.096 50.000 17.90 0.00 0.00 3.57
2848 3074 2.223479 CCTGTTGGACTTTTCAACGTGG 60.223 50.000 0.00 0.00 45.22 4.94
2899 3126 5.054390 TGCGAACAAGGATTCCAAAATAC 57.946 39.130 5.29 0.00 0.00 1.89
2900 3127 4.520874 TGCGAACAAGGATTCCAAAATACA 59.479 37.500 5.29 0.00 0.00 2.29
2901 3128 5.095490 GCGAACAAGGATTCCAAAATACAG 58.905 41.667 5.29 0.00 0.00 2.74
2902 3129 5.335661 GCGAACAAGGATTCCAAAATACAGT 60.336 40.000 5.29 0.00 0.00 3.55
2903 3130 6.128117 GCGAACAAGGATTCCAAAATACAGTA 60.128 38.462 5.29 0.00 0.00 2.74
2904 3131 7.574217 GCGAACAAGGATTCCAAAATACAGTAA 60.574 37.037 5.29 0.00 0.00 2.24
2905 3132 8.458843 CGAACAAGGATTCCAAAATACAGTAAT 58.541 33.333 5.29 0.00 0.00 1.89
2938 4040 2.613595 TCTCACAAGTCACATGTTGCAC 59.386 45.455 0.00 0.00 0.00 4.57
2951 4059 0.248843 GTTGCACTAGCCTCTCTGCT 59.751 55.000 0.00 0.00 45.38 4.24
2952 4060 0.248565 TTGCACTAGCCTCTCTGCTG 59.751 55.000 0.00 0.00 42.77 4.41
2968 4076 1.475280 TGCTGCCTACTACCACTAACG 59.525 52.381 0.00 0.00 0.00 3.18
2976 4084 4.521639 CCTACTACCACTAACGCCATATCA 59.478 45.833 0.00 0.00 0.00 2.15
3051 4159 4.214383 CTGCCATTCTCGTGCGCG 62.214 66.667 14.79 14.79 39.92 6.86
3061 4169 3.713968 TCGTGCGCGAAAACTTTAC 57.286 47.368 21.82 0.00 44.92 2.01
3074 4183 5.442909 CGAAAACTTTACCTTCTCATCGACG 60.443 44.000 0.00 0.00 0.00 5.12
3075 4184 2.877335 ACTTTACCTTCTCATCGACGC 58.123 47.619 0.00 0.00 0.00 5.19
3099 4208 1.202325 CGCCACTTGCATGCATACAAT 60.202 47.619 23.37 2.39 41.33 2.71
3100 4209 2.736081 CGCCACTTGCATGCATACAATT 60.736 45.455 23.37 4.78 41.33 2.32
3101 4210 3.488890 CGCCACTTGCATGCATACAATTA 60.489 43.478 23.37 3.14 41.33 1.40
3102 4211 3.798337 GCCACTTGCATGCATACAATTAC 59.202 43.478 23.37 3.01 40.77 1.89
3103 4212 4.677514 GCCACTTGCATGCATACAATTACA 60.678 41.667 23.37 1.46 40.77 2.41
3104 4213 5.409211 CCACTTGCATGCATACAATTACAA 58.591 37.500 23.37 0.63 0.00 2.41
3106 4215 5.289193 CACTTGCATGCATACAATTACAACC 59.711 40.000 23.37 0.00 0.00 3.77
3107 4216 5.047448 ACTTGCATGCATACAATTACAACCA 60.047 36.000 23.37 0.00 0.00 3.67
3108 4217 4.742417 TGCATGCATACAATTACAACCAC 58.258 39.130 18.46 0.00 0.00 4.16
3110 4219 4.681744 CATGCATACAATTACAACCACCC 58.318 43.478 0.00 0.00 0.00 4.61
3113 4222 3.428862 GCATACAATTACAACCACCCTGC 60.429 47.826 0.00 0.00 0.00 4.85
3114 4223 2.373335 ACAATTACAACCACCCTGCA 57.627 45.000 0.00 0.00 0.00 4.41
3116 4225 2.562298 ACAATTACAACCACCCTGCATG 59.438 45.455 0.00 0.00 0.00 4.06
3117 4226 2.562298 CAATTACAACCACCCTGCATGT 59.438 45.455 0.00 0.00 0.00 3.21
3118 4227 1.614996 TTACAACCACCCTGCATGTG 58.385 50.000 9.04 9.04 0.00 3.21
3119 4228 0.893270 TACAACCACCCTGCATGTGC 60.893 55.000 10.25 0.00 42.50 4.57
3120 4229 1.904865 CAACCACCCTGCATGTGCT 60.905 57.895 10.25 0.00 42.66 4.40
3138 4249 1.638529 CTGGTTTGGTTTGGGCCATA 58.361 50.000 7.26 0.00 38.48 2.74
3142 4253 3.100671 GGTTTGGTTTGGGCCATACATA 58.899 45.455 25.27 12.97 40.63 2.29
3146 4257 3.561143 TGGTTTGGGCCATACATATGTC 58.439 45.455 25.27 9.93 32.81 3.06
3147 4258 3.053320 TGGTTTGGGCCATACATATGTCA 60.053 43.478 25.27 12.16 32.81 3.58
3148 4259 3.957497 GGTTTGGGCCATACATATGTCAA 59.043 43.478 25.27 6.47 31.82 3.18
3159 4270 6.479990 CCATACATATGTCAAGTGTGAACGAT 59.520 38.462 12.68 0.00 34.87 3.73
3192 4322 1.600107 CCGTCGGGAAGGGAAATGA 59.400 57.895 2.34 0.00 34.67 2.57
3251 4383 6.427242 CACCTCCAAATCTGATGACATATGAG 59.573 42.308 10.38 0.00 0.00 2.90
3252 4384 6.328410 ACCTCCAAATCTGATGACATATGAGA 59.672 38.462 10.38 1.33 0.00 3.27
3253 4385 6.649973 CCTCCAAATCTGATGACATATGAGAC 59.350 42.308 10.38 1.28 0.00 3.36
3254 4386 7.128234 TCCAAATCTGATGACATATGAGACA 57.872 36.000 10.38 7.05 0.00 3.41
3255 4387 7.742767 TCCAAATCTGATGACATATGAGACAT 58.257 34.615 10.38 11.39 0.00 3.06
3256 4388 7.660208 TCCAAATCTGATGACATATGAGACATG 59.340 37.037 10.38 4.41 0.00 3.21
3259 4391 6.110411 TCTGATGACATATGAGACATGCAT 57.890 37.500 10.38 0.00 0.00 3.96
3260 4392 5.932303 TCTGATGACATATGAGACATGCATG 59.068 40.000 25.09 25.09 0.00 4.06
3261 4393 5.617252 TGATGACATATGAGACATGCATGT 58.383 37.500 31.82 31.82 45.16 3.21
3265 4397 3.146847 CATATGAGACATGCATGTGCCT 58.853 45.455 35.92 26.36 41.95 4.75
3266 4398 2.139323 ATGAGACATGCATGTGCCTT 57.861 45.000 35.92 20.35 41.95 4.35
3267 4399 1.456296 TGAGACATGCATGTGCCTTC 58.544 50.000 35.92 24.47 41.95 3.46
3268 4400 1.271488 TGAGACATGCATGTGCCTTCA 60.271 47.619 35.92 26.40 41.95 3.02
3269 4401 1.131883 GAGACATGCATGTGCCTTCAC 59.868 52.381 35.92 19.27 41.95 3.18
3270 4402 0.171903 GACATGCATGTGCCTTCACC 59.828 55.000 35.92 15.45 41.95 4.02
3271 4403 1.138036 CATGCATGTGCCTTCACCG 59.862 57.895 18.91 0.00 42.46 4.94
3272 4404 2.703798 ATGCATGTGCCTTCACCGC 61.704 57.895 0.00 0.00 42.46 5.68
3273 4405 3.364441 GCATGTGCCTTCACCGCA 61.364 61.111 0.00 0.00 42.46 5.69
3274 4406 2.872557 CATGTGCCTTCACCGCAG 59.127 61.111 0.00 0.00 42.46 5.18
3275 4407 1.968017 CATGTGCCTTCACCGCAGT 60.968 57.895 0.00 0.00 42.46 4.40
3312 4444 2.047560 GTGGGAGTACGTGGCACC 60.048 66.667 12.86 0.00 0.00 5.01
3313 4445 2.203728 TGGGAGTACGTGGCACCT 60.204 61.111 12.86 2.97 0.00 4.00
3314 4446 2.264794 GGGAGTACGTGGCACCTG 59.735 66.667 12.86 0.98 0.00 4.00
3315 4447 2.434359 GGAGTACGTGGCACCTGC 60.434 66.667 12.86 5.06 41.14 4.85
3316 4448 2.657237 GAGTACGTGGCACCTGCT 59.343 61.111 12.86 9.57 41.70 4.24
3317 4449 1.446272 GAGTACGTGGCACCTGCTC 60.446 63.158 16.03 16.03 41.70 4.26
3319 4451 4.063967 TACGTGGCACCTGCTCGG 62.064 66.667 12.86 0.00 40.32 4.63
3373 4505 0.318191 ATCGCAGGACATCGATCACG 60.318 55.000 0.00 0.00 40.98 4.35
3408 4540 3.437741 TCACAAGACTGCTAACGATACGA 59.562 43.478 0.00 0.00 0.00 3.43
3409 4541 4.095932 TCACAAGACTGCTAACGATACGAT 59.904 41.667 0.00 0.00 0.00 3.73
3410 4542 5.295045 TCACAAGACTGCTAACGATACGATA 59.705 40.000 0.00 0.00 0.00 2.92
3411 4543 5.395778 CACAAGACTGCTAACGATACGATAC 59.604 44.000 0.00 0.00 0.00 2.24
3412 4544 4.386716 AGACTGCTAACGATACGATACG 57.613 45.455 0.00 0.00 0.00 3.06
3413 4545 2.901264 GACTGCTAACGATACGATACGC 59.099 50.000 0.00 0.00 0.00 4.42
3414 4546 2.288729 ACTGCTAACGATACGATACGCA 59.711 45.455 0.00 0.00 0.00 5.24
3415 4547 2.642995 TGCTAACGATACGATACGCAC 58.357 47.619 0.00 0.00 0.00 5.34
3416 4548 1.636135 GCTAACGATACGATACGCACG 59.364 52.381 0.00 0.00 0.00 5.34
3417 4549 2.660094 GCTAACGATACGATACGCACGA 60.660 50.000 0.00 0.00 34.70 4.35
3418 4550 1.734885 AACGATACGATACGCACGAC 58.265 50.000 0.00 0.00 34.70 4.34
3419 4551 0.041839 ACGATACGATACGCACGACC 60.042 55.000 0.00 0.00 34.70 4.79
3420 4552 0.234106 CGATACGATACGCACGACCT 59.766 55.000 0.00 0.00 34.70 3.85
3421 4553 1.671469 GATACGATACGCACGACCTG 58.329 55.000 0.00 0.00 34.70 4.00
3422 4554 0.317603 ATACGATACGCACGACCTGC 60.318 55.000 0.00 0.00 43.21 4.85
3482 4614 3.490759 GCCGACGATGCACACTGG 61.491 66.667 0.00 0.00 0.00 4.00
3513 4645 0.110464 GTCTTGCGCTCTTGCTTGTC 60.110 55.000 9.73 0.00 36.97 3.18
3514 4646 0.532640 TCTTGCGCTCTTGCTTGTCA 60.533 50.000 9.73 0.00 36.97 3.58
3515 4647 0.110328 CTTGCGCTCTTGCTTGTCAG 60.110 55.000 9.73 0.00 36.97 3.51
3551 4683 8.112449 GCAAACTAATCCGTATACTGTAACAAC 58.888 37.037 0.56 0.00 0.00 3.32
3552 4684 7.975866 AACTAATCCGTATACTGTAACAACG 57.024 36.000 0.56 11.45 0.00 4.10
3593 4726 8.024865 GGTTAATAAGTTGCGGTTACTTTGAAT 58.975 33.333 0.00 0.00 37.12 2.57
3594 4727 9.401873 GTTAATAAGTTGCGGTTACTTTGAATT 57.598 29.630 0.00 0.00 37.12 2.17
3595 4728 9.968870 TTAATAAGTTGCGGTTACTTTGAATTT 57.031 25.926 0.00 0.00 37.12 1.82
3618 4751 2.826428 AGTACTGACTGTGTGTTGCTG 58.174 47.619 0.00 0.00 33.41 4.41
3650 4783 0.106708 TTTCGAGCACCTGAACAGCT 59.893 50.000 0.00 0.00 42.17 4.24
3749 4882 2.910479 TGCTCACCCACGACGACT 60.910 61.111 0.00 0.00 0.00 4.18
3853 4986 3.729906 CTACCGGGCGAACGACGAG 62.730 68.421 6.32 0.00 45.77 4.18
4393 5529 1.051556 CCTTCTCCTACTGCCTCCCC 61.052 65.000 0.00 0.00 0.00 4.81
4465 5601 1.144057 CTCCTACACGCCCATGGTC 59.856 63.158 11.73 0.00 0.00 4.02
5091 6233 7.397192 ACAAGGTAGATAAAAAGGAGGTACGTA 59.603 37.037 0.00 0.00 0.00 3.57
5092 6234 7.340122 AGGTAGATAAAAAGGAGGTACGTAC 57.660 40.000 17.56 17.56 0.00 3.67
5093 6235 7.122048 AGGTAGATAAAAAGGAGGTACGTACT 58.878 38.462 24.07 11.06 0.00 2.73
5094 6236 8.275040 AGGTAGATAAAAAGGAGGTACGTACTA 58.725 37.037 24.07 7.50 0.00 1.82
5095 6237 8.563732 GGTAGATAAAAAGGAGGTACGTACTAG 58.436 40.741 24.07 0.00 0.00 2.57
5096 6238 9.114952 GTAGATAAAAAGGAGGTACGTACTAGT 57.885 37.037 24.07 10.19 0.00 2.57
5168 6315 6.201425 TCGTTGTGTTACATAAAAGGAGACAC 59.799 38.462 0.00 0.00 37.14 3.67
5187 6334 5.121768 AGACACCGAGCACAAAACATATTAC 59.878 40.000 0.00 0.00 0.00 1.89
5243 6390 6.173339 GTTCAGACCAGATATTGAAAGTGGA 58.827 40.000 0.00 0.00 31.98 4.02
5244 6391 6.373005 TCAGACCAGATATTGAAAGTGGAA 57.627 37.500 0.00 0.00 32.26 3.53
5245 6392 6.778821 TCAGACCAGATATTGAAAGTGGAAA 58.221 36.000 0.00 0.00 32.26 3.13
5246 6393 7.230747 TCAGACCAGATATTGAAAGTGGAAAA 58.769 34.615 0.00 0.00 32.26 2.29
5247 6394 7.723616 TCAGACCAGATATTGAAAGTGGAAAAA 59.276 33.333 0.00 0.00 32.26 1.94
5248 6395 8.025445 CAGACCAGATATTGAAAGTGGAAAAAG 58.975 37.037 0.00 0.00 32.26 2.27
5385 6534 3.179048 GTGCCTTTGTTTCGAATATGGC 58.821 45.455 17.87 17.87 39.53 4.40
5427 6576 3.058639 GCTCCTGTTTGAGAACATGTGAC 60.059 47.826 0.00 0.00 44.30 3.67
5439 6588 7.424803 TGAGAACATGTGACTTGTAAAATTGG 58.575 34.615 0.00 0.00 0.00 3.16
5448 6597 8.185505 TGTGACTTGTAAAATTGGAAACTGTAC 58.814 33.333 0.00 0.00 0.00 2.90
5514 6663 8.922058 ATAACATTTCTGACATGATTTCAAGC 57.078 30.769 10.56 0.00 0.00 4.01
5521 6670 3.057806 TGACATGATTTCAAGCTGTGCTG 60.058 43.478 0.00 0.00 39.62 4.41
5571 6720 6.355747 TGTCATGTATGAGAAATATGTGGCA 58.644 36.000 0.00 0.00 37.51 4.92
5594 6743 3.570975 TGAACATTCATGCCTATGATGCC 59.429 43.478 8.63 0.00 42.60 4.40
5633 6784 0.376152 GCACCACGCTTGAGATCATG 59.624 55.000 0.00 0.00 37.77 3.07
5696 6847 3.429135 CGCTAGTCCACTCCTTTAAGACC 60.429 52.174 0.00 0.00 0.00 3.85
5713 6864 5.762179 AAGACCAGTCATTAGTCAATGGA 57.238 39.130 0.00 0.00 41.66 3.41
5728 6879 6.055588 AGTCAATGGATCCCTATTTTGTACG 58.944 40.000 9.90 0.00 0.00 3.67
5730 6881 3.202829 TGGATCCCTATTTTGTACGGC 57.797 47.619 9.90 0.00 0.00 5.68
5762 6913 8.642935 TTGTAATTCCATATTTCACAAGTGGA 57.357 30.769 0.00 0.00 37.20 4.02
5764 6915 8.685427 TGTAATTCCATATTTCACAAGTGGATG 58.315 33.333 0.00 0.59 38.64 3.51
5779 6930 5.649782 AGTGGATGTTGCAAGGAAAATAG 57.350 39.130 0.00 0.00 0.00 1.73
5783 6934 6.151144 GTGGATGTTGCAAGGAAAATAGTACT 59.849 38.462 0.00 0.00 0.00 2.73
5784 6935 7.335924 GTGGATGTTGCAAGGAAAATAGTACTA 59.664 37.037 4.77 4.77 0.00 1.82
5785 6936 7.335924 TGGATGTTGCAAGGAAAATAGTACTAC 59.664 37.037 4.31 0.00 0.00 2.73
5786 6937 6.715344 TGTTGCAAGGAAAATAGTACTACG 57.285 37.500 4.31 0.00 0.00 3.51
5794 6945 8.333186 CAAGGAAAATAGTACTACGTAATTGGC 58.667 37.037 4.31 0.00 0.00 4.52
5859 7011 2.263077 CATCGGTGACTGCTACAAGAC 58.737 52.381 0.00 0.00 0.00 3.01
5876 7028 5.057149 ACAAGACGAAAGAACATTAGTGCT 58.943 37.500 0.00 0.00 34.02 4.40
5882 7034 5.122396 ACGAAAGAACATTAGTGCTTGGATC 59.878 40.000 0.00 0.00 43.02 3.36
5889 7041 1.725641 TAGTGCTTGGATCGTTGCAG 58.274 50.000 5.57 0.00 36.03 4.41
5892 7044 2.009774 GTGCTTGGATCGTTGCAGTAT 58.990 47.619 5.57 0.00 36.03 2.12
5896 7048 3.485877 GCTTGGATCGTTGCAGTATGTTC 60.486 47.826 0.00 0.00 39.31 3.18
5917 7069 6.817641 TGTTCAATCATTGCAACAAAGAAAGT 59.182 30.769 0.00 0.00 32.11 2.66
5934 7086 6.270156 AGAAAGTACAACTAGTCAGGTAGC 57.730 41.667 0.00 0.00 0.00 3.58
5935 7087 5.773680 AGAAAGTACAACTAGTCAGGTAGCA 59.226 40.000 0.00 0.00 0.00 3.49
5936 7088 5.646577 AAGTACAACTAGTCAGGTAGCAG 57.353 43.478 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.117685 AGAAACGGAATCTATTGTACGGC 58.882 43.478 0.00 0.00 0.00 5.68
130 131 1.684869 GGAGAGAGTGACCTGCTAGCT 60.685 57.143 17.23 0.00 0.00 3.32
182 187 0.037326 ATCAGTGGTGGTACAGTGCG 60.037 55.000 0.00 0.00 41.80 5.34
221 226 0.673985 TGGACCTTCACACGACTCTG 59.326 55.000 0.00 0.00 0.00 3.35
270 275 1.814394 GTCTGATGCATGGCAACTTCA 59.186 47.619 2.46 0.09 43.62 3.02
426 592 0.103208 GTCGATCGGCTGAATCAGGT 59.897 55.000 13.54 0.00 31.21 4.00
469 635 0.250727 TGTGTAGCCCAGCAAACTCC 60.251 55.000 0.00 0.00 0.00 3.85
472 638 0.821711 TGGTGTGTAGCCCAGCAAAC 60.822 55.000 0.00 0.00 37.38 2.93
502 668 1.933500 GCATATGGTACGTACTGGGCG 60.934 57.143 24.07 11.99 0.00 6.13
506 672 2.800544 GCAAGGCATATGGTACGTACTG 59.199 50.000 24.07 15.58 0.00 2.74
512 678 1.873591 CGAAGGCAAGGCATATGGTAC 59.126 52.381 4.56 0.00 0.00 3.34
513 679 1.765904 TCGAAGGCAAGGCATATGGTA 59.234 47.619 4.56 0.00 0.00 3.25
514 680 0.546122 TCGAAGGCAAGGCATATGGT 59.454 50.000 4.56 0.00 0.00 3.55
515 681 0.947244 GTCGAAGGCAAGGCATATGG 59.053 55.000 4.56 0.00 0.00 2.74
516 682 0.947244 GGTCGAAGGCAAGGCATATG 59.053 55.000 0.00 0.00 0.00 1.78
517 683 0.179018 GGGTCGAAGGCAAGGCATAT 60.179 55.000 0.00 0.00 0.00 1.78
633 803 5.251764 AGGCATCTGAATATATTCTGCACC 58.748 41.667 26.63 22.79 37.28 5.01
649 819 2.042831 GCGTTCAGCCAAGGCATCT 61.043 57.895 14.40 0.00 44.02 2.90
664 834 2.856628 TTCAGACTCTGCCGTGCGT 61.857 57.895 0.62 0.00 0.00 5.24
694 870 2.330372 TGCTGCTGCTGCTACTTGC 61.330 57.895 27.67 12.50 40.48 4.01
695 871 1.500844 GTGCTGCTGCTGCTACTTG 59.499 57.895 27.67 3.48 40.48 3.16
696 872 1.673665 GGTGCTGCTGCTGCTACTT 60.674 57.895 27.67 0.00 40.48 2.24
697 873 2.046507 GGTGCTGCTGCTGCTACT 60.047 61.111 27.67 0.00 40.48 2.57
698 874 3.130160 GGGTGCTGCTGCTGCTAC 61.130 66.667 27.67 22.46 40.48 3.58
699 875 2.695520 TTTGGGTGCTGCTGCTGCTA 62.696 55.000 27.67 14.32 40.48 3.49
700 876 4.591399 TTGGGTGCTGCTGCTGCT 62.591 61.111 27.67 0.00 40.48 4.24
701 877 3.608662 TTTGGGTGCTGCTGCTGC 61.609 61.111 22.51 22.51 40.48 5.25
751 927 2.983592 GCAACTCCAACCACCGGG 60.984 66.667 6.32 0.00 41.29 5.73
874 1052 3.832237 AAGCTCAGCACCCGTGTGG 62.832 63.158 0.00 0.00 42.99 4.17
904 1082 2.000701 CAGGCTATGGGTGGGTGGA 61.001 63.158 0.00 0.00 0.00 4.02
905 1083 2.597340 CAGGCTATGGGTGGGTGG 59.403 66.667 0.00 0.00 0.00 4.61
906 1084 2.124151 GCAGGCTATGGGTGGGTG 60.124 66.667 0.00 0.00 0.00 4.61
907 1085 2.613696 TGCAGGCTATGGGTGGGT 60.614 61.111 0.00 0.00 0.00 4.51
974 1152 4.092675 CGCCTGAACTGAAATCTTCTTCTC 59.907 45.833 0.00 0.00 0.00 2.87
983 1161 2.636830 CCATCTCGCCTGAACTGAAAT 58.363 47.619 0.00 0.00 0.00 2.17
1120 1298 2.262266 AGGAGGAAGGAAGGAAGGAG 57.738 55.000 0.00 0.00 0.00 3.69
1163 1349 2.483877 ACACACACACACACAAGAACAG 59.516 45.455 0.00 0.00 0.00 3.16
1170 1356 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1171 1357 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1172 1358 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1173 1359 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1174 1360 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1175 1361 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1176 1362 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1177 1363 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1178 1364 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1179 1365 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1180 1366 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1181 1367 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1182 1368 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1183 1369 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1184 1370 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1185 1371 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1186 1372 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1187 1373 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1188 1374 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1189 1375 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1190 1376 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1191 1377 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1192 1378 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1193 1379 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1194 1380 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1195 1381 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1196 1382 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1197 1383 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1198 1384 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1199 1385 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1200 1386 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1201 1387 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1202 1388 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1203 1389 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1204 1390 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
1205 1391 4.094911 CAATTACACACACACACACACAC 58.905 43.478 0.00 0.00 0.00 3.82
1206 1392 3.426829 GCAATTACACACACACACACACA 60.427 43.478 0.00 0.00 0.00 3.72
1207 1393 3.105203 GCAATTACACACACACACACAC 58.895 45.455 0.00 0.00 0.00 3.82
1208 1394 3.013219 AGCAATTACACACACACACACA 58.987 40.909 0.00 0.00 0.00 3.72
1209 1395 3.691049 AGCAATTACACACACACACAC 57.309 42.857 0.00 0.00 0.00 3.82
1220 1407 1.683917 ACCAACGGCAAAGCAATTACA 59.316 42.857 0.00 0.00 0.00 2.41
1221 1408 2.432206 ACCAACGGCAAAGCAATTAC 57.568 45.000 0.00 0.00 0.00 1.89
1277 1464 5.010012 CCCTGTTTTTAGCAAGTCAACAGAT 59.990 40.000 11.10 0.00 44.76 2.90
1279 1466 4.499696 CCCCTGTTTTTAGCAAGTCAACAG 60.500 45.833 3.80 3.80 42.63 3.16
1282 1469 3.637769 ACCCCTGTTTTTAGCAAGTCAA 58.362 40.909 0.00 0.00 0.00 3.18
1300 1487 7.116376 CGTAATATGTCAAGTCATCATGTACCC 59.884 40.741 0.00 0.00 0.00 3.69
1301 1488 7.652105 ACGTAATATGTCAAGTCATCATGTACC 59.348 37.037 0.00 0.00 0.00 3.34
1324 1511 8.794553 CCTACTGAACCATCTAATCTAATACGT 58.205 37.037 0.00 0.00 0.00 3.57
1325 1512 9.011095 TCCTACTGAACCATCTAATCTAATACG 57.989 37.037 0.00 0.00 0.00 3.06
1340 1527 5.746284 AGCCTTTTCTATTCCTACTGAACC 58.254 41.667 0.00 0.00 35.31 3.62
1362 1549 7.221067 GCACTTAGGCGCTATATAAGTCAATAG 59.779 40.741 18.28 11.69 37.59 1.73
1366 1553 4.279922 TGCACTTAGGCGCTATATAAGTCA 59.720 41.667 18.28 16.29 37.59 3.41
1367 1554 4.806330 TGCACTTAGGCGCTATATAAGTC 58.194 43.478 18.28 14.81 37.59 3.01
1369 1556 5.060662 TCTGCACTTAGGCGCTATATAAG 57.939 43.478 7.64 13.08 36.28 1.73
1375 1562 2.550978 GAATTCTGCACTTAGGCGCTA 58.449 47.619 7.64 0.00 36.28 4.26
1378 1565 1.640428 TCGAATTCTGCACTTAGGCG 58.360 50.000 3.52 0.00 36.28 5.52
1381 1568 8.948853 TGTAAATTTTCGAATTCTGCACTTAG 57.051 30.769 0.00 0.00 0.00 2.18
1383 1570 7.382218 CCTTGTAAATTTTCGAATTCTGCACTT 59.618 33.333 0.00 0.00 0.00 3.16
1386 1573 5.633182 GCCTTGTAAATTTTCGAATTCTGCA 59.367 36.000 0.00 0.00 0.00 4.41
1388 1575 5.856455 ACGCCTTGTAAATTTTCGAATTCTG 59.144 36.000 0.00 0.00 0.00 3.02
1442 1630 2.507484 CACTTCAGCAAGGGAACATCA 58.493 47.619 0.00 0.00 34.53 3.07
1449 1637 1.975407 CTGGCCACTTCAGCAAGGG 60.975 63.158 0.00 0.00 33.37 3.95
1470 1666 1.002544 ACAGCAGTGCTTCTACCTTCC 59.997 52.381 16.89 0.00 36.40 3.46
1515 1711 3.082698 TGTGTGTCACGGTGTTACTAC 57.917 47.619 8.17 9.45 37.14 2.73
1525 1721 1.351430 CGGCCTACATGTGTGTCACG 61.351 60.000 9.11 1.94 39.77 4.35
1584 1780 1.010419 GCGCTGCAGGTTGGAAAATG 61.010 55.000 17.12 0.00 0.00 2.32
1586 1782 2.727544 GCGCTGCAGGTTGGAAAA 59.272 55.556 17.12 0.00 0.00 2.29
1636 1832 1.442857 GGCTGTCGACTCTCACACG 60.443 63.158 17.92 0.00 0.00 4.49
1690 1886 1.069978 GCTACTGGGAGGAGATTCTGC 59.930 57.143 0.00 0.00 0.00 4.26
1723 1923 3.766545 TCCTGGTGGAGAAAAGAATTGG 58.233 45.455 0.00 0.00 37.46 3.16
1745 1945 6.033966 GTGGTTATACTAGCATTGTTTTGCC 58.966 40.000 0.00 0.00 43.83 4.52
1751 1951 4.226394 TGGTGGTGGTTATACTAGCATTGT 59.774 41.667 0.00 0.00 39.20 2.71
1752 1952 4.776349 TGGTGGTGGTTATACTAGCATTG 58.224 43.478 0.00 0.00 39.20 2.82
1754 1954 4.412199 ACATGGTGGTGGTTATACTAGCAT 59.588 41.667 0.00 0.00 46.57 3.79
1755 1955 3.778075 ACATGGTGGTGGTTATACTAGCA 59.222 43.478 0.00 0.00 42.33 3.49
1757 1957 4.098960 ACGACATGGTGGTGGTTATACTAG 59.901 45.833 0.00 0.00 0.00 2.57
1758 1958 4.025360 ACGACATGGTGGTGGTTATACTA 58.975 43.478 0.00 0.00 0.00 1.82
1759 1959 2.835764 ACGACATGGTGGTGGTTATACT 59.164 45.455 0.00 0.00 0.00 2.12
1760 1960 3.255969 ACGACATGGTGGTGGTTATAC 57.744 47.619 0.00 0.00 0.00 1.47
1762 1962 2.871096 AACGACATGGTGGTGGTTAT 57.129 45.000 0.00 0.00 37.84 1.89
1765 1965 0.323629 CCTAACGACATGGTGGTGGT 59.676 55.000 0.00 0.00 0.00 4.16
1766 1966 0.323629 ACCTAACGACATGGTGGTGG 59.676 55.000 0.00 0.00 32.16 4.61
1767 1967 1.438651 CACCTAACGACATGGTGGTG 58.561 55.000 0.00 0.00 45.29 4.17
1778 1978 1.864711 CCGGTCATTATGCACCTAACG 59.135 52.381 0.00 0.00 0.00 3.18
1811 2011 2.566824 TGGAATTCCAGCGGAAAGC 58.433 52.632 23.63 8.48 45.41 3.51
1853 2053 3.145551 GCGCCTAACCGAGGGAGA 61.146 66.667 0.00 0.00 46.81 3.71
1854 2054 3.458163 TGCGCCTAACCGAGGGAG 61.458 66.667 4.18 0.00 46.81 4.30
1855 2055 3.766691 GTGCGCCTAACCGAGGGA 61.767 66.667 4.18 0.00 46.81 4.20
1912 2116 1.268743 GCATGATTGGCCTAAAGCGAC 60.269 52.381 3.32 0.00 45.17 5.19
1913 2117 1.024271 GCATGATTGGCCTAAAGCGA 58.976 50.000 3.32 0.00 45.17 4.93
1914 2118 3.557207 GCATGATTGGCCTAAAGCG 57.443 52.632 3.32 0.00 45.17 4.68
1948 2152 3.188159 AGGAGCGGCGTTGATTAATAA 57.812 42.857 9.37 0.00 0.00 1.40
1949 2153 2.902705 AGGAGCGGCGTTGATTAATA 57.097 45.000 9.37 0.00 0.00 0.98
1950 2154 2.038387 AAGGAGCGGCGTTGATTAAT 57.962 45.000 9.37 0.00 0.00 1.40
2042 2249 0.527817 CGATCGGCCACTAACTCACC 60.528 60.000 7.38 0.00 0.00 4.02
2064 2271 1.876714 CGGCCGAAGTACACCATCG 60.877 63.158 24.07 0.00 36.39 3.84
2065 2272 2.171725 GCGGCCGAAGTACACCATC 61.172 63.158 33.48 1.41 0.00 3.51
2066 2273 2.125269 GCGGCCGAAGTACACCAT 60.125 61.111 33.48 0.00 0.00 3.55
2067 2274 4.382320 GGCGGCCGAAGTACACCA 62.382 66.667 33.48 0.00 0.00 4.17
2089 2296 2.568031 CGATCGATGCACGTCACGG 61.568 63.158 10.26 0.00 43.13 4.94
2093 2300 1.944676 GGACCGATCGATGCACGTC 60.945 63.158 18.66 13.63 43.13 4.34
2094 2301 2.016393 ATGGACCGATCGATGCACGT 62.016 55.000 18.66 4.15 43.13 4.49
2095 2302 1.278172 GATGGACCGATCGATGCACG 61.278 60.000 18.66 0.00 44.09 5.34
2096 2303 0.249447 TGATGGACCGATCGATGCAC 60.249 55.000 18.66 6.65 0.00 4.57
2097 2304 0.463620 TTGATGGACCGATCGATGCA 59.536 50.000 18.66 12.58 0.00 3.96
2098 2305 1.462283 CATTGATGGACCGATCGATGC 59.538 52.381 18.66 4.97 37.40 3.91
2142 2354 2.842256 CGCTAGATACGGCGGTGGT 61.842 63.158 13.24 0.00 46.42 4.16
2143 2355 2.050351 CGCTAGATACGGCGGTGG 60.050 66.667 13.24 0.00 46.42 4.61
2148 2360 2.009755 GTGTCGCGCTAGATACGGC 61.010 63.158 5.56 0.00 0.00 5.68
2248 2460 4.052229 ACCGAGAACGCACCTCCG 62.052 66.667 0.00 0.00 38.29 4.63
2251 2463 3.231736 ACCACCGAGAACGCACCT 61.232 61.111 0.00 0.00 38.29 4.00
2252 2464 3.041940 CACCACCGAGAACGCACC 61.042 66.667 0.00 0.00 38.29 5.01
2253 2465 2.279918 ACACCACCGAGAACGCAC 60.280 61.111 0.00 0.00 38.29 5.34
2254 2466 2.028484 GACACCACCGAGAACGCA 59.972 61.111 0.00 0.00 38.29 5.24
2255 2467 2.022129 CAGACACCACCGAGAACGC 61.022 63.158 0.00 0.00 38.29 4.84
2263 2477 0.981183 TCCATACACCAGACACCACC 59.019 55.000 0.00 0.00 0.00 4.61
2276 2490 0.172803 AGAACTGACGCCGTCCATAC 59.827 55.000 15.60 4.28 0.00 2.39
2277 2491 0.172578 CAGAACTGACGCCGTCCATA 59.827 55.000 15.60 0.00 0.00 2.74
2283 2497 1.621301 CTGAAGCAGAACTGACGCCG 61.621 60.000 5.97 0.00 32.44 6.46
2284 2498 1.905922 GCTGAAGCAGAACTGACGCC 61.906 60.000 5.97 0.00 41.59 5.68
2285 2499 0.948141 AGCTGAAGCAGAACTGACGC 60.948 55.000 4.90 0.72 45.16 5.19
2291 2505 2.735823 CCACAAAAGCTGAAGCAGAAC 58.264 47.619 4.90 0.00 45.16 3.01
2329 2543 1.234615 CCACGCTCCAACATTTCCGT 61.235 55.000 0.00 0.00 0.00 4.69
2356 2570 1.705337 GGCTACACGTAGTACCGCGA 61.705 60.000 8.23 0.00 41.61 5.87
2357 2571 1.297893 GGCTACACGTAGTACCGCG 60.298 63.158 0.00 0.00 41.61 6.46
2358 2572 0.383231 ATGGCTACACGTAGTACCGC 59.617 55.000 6.12 0.00 41.61 5.68
2359 2573 3.750130 AGATATGGCTACACGTAGTACCG 59.250 47.826 6.12 0.00 41.61 4.02
2360 2574 4.082895 CCAGATATGGCTACACGTAGTACC 60.083 50.000 6.12 0.85 41.61 3.34
2400 2614 1.002544 AGCTAAGCCAGTGTTCAGGAC 59.997 52.381 0.00 0.00 0.00 3.85
2411 2625 7.069950 TCAGACAATCTAATCTAAGCTAAGCCA 59.930 37.037 0.00 0.00 0.00 4.75
2412 2626 7.437748 TCAGACAATCTAATCTAAGCTAAGCC 58.562 38.462 0.00 0.00 0.00 4.35
2491 2706 0.389948 CAAGACTGTACACCCGGAGC 60.390 60.000 0.73 0.00 0.00 4.70
2545 2764 3.262405 GTGACCATTAGGAACACCCTACA 59.738 47.826 0.00 0.00 46.85 2.74
2660 2880 1.981256 ACACGGCTTCCATGACTTTT 58.019 45.000 0.00 0.00 0.00 2.27
2674 2894 0.937304 CACCAGTCAGTTCAACACGG 59.063 55.000 0.00 0.00 0.00 4.94
2705 2929 2.921972 GGGTGGTTGCCAATGCCA 60.922 61.111 0.00 0.00 34.18 4.92
2706 2930 3.705289 GGGGTGGTTGCCAATGCC 61.705 66.667 0.00 0.00 34.18 4.40
2707 2931 1.840224 ATTGGGGTGGTTGCCAATGC 61.840 55.000 0.00 0.00 34.18 3.56
2708 2932 0.249955 GATTGGGGTGGTTGCCAATG 59.750 55.000 0.00 0.00 34.18 2.82
2709 2933 0.178909 TGATTGGGGTGGTTGCCAAT 60.179 50.000 0.00 0.00 34.18 3.16
2710 2934 0.178909 ATGATTGGGGTGGTTGCCAA 60.179 50.000 0.00 0.00 34.18 4.52
2731 2955 3.003068 GCAGTGCTCACCATGATACAATC 59.997 47.826 8.18 0.00 0.00 2.67
2735 2959 1.938577 CAGCAGTGCTCACCATGATAC 59.061 52.381 16.58 0.00 36.40 2.24
2770 2996 2.113860 TTTGGTTGGCAGCTAGCTAG 57.886 50.000 18.86 16.84 44.79 3.42
2771 2997 2.436417 CTTTTGGTTGGCAGCTAGCTA 58.564 47.619 18.86 0.00 44.79 3.32
2798 3024 1.664649 CGTCGGCAAGCAAGTGAGA 60.665 57.895 0.00 0.00 0.00 3.27
2860 3087 4.408993 TCGCAGACACTGAAATGAAATG 57.591 40.909 2.81 0.00 32.44 2.32
2861 3088 4.275689 TGTTCGCAGACACTGAAATGAAAT 59.724 37.500 2.81 0.00 34.32 2.17
2862 3089 3.625313 TGTTCGCAGACACTGAAATGAAA 59.375 39.130 2.81 0.00 34.32 2.69
2863 3090 3.202097 TGTTCGCAGACACTGAAATGAA 58.798 40.909 2.81 0.00 34.32 2.57
2864 3091 2.832563 TGTTCGCAGACACTGAAATGA 58.167 42.857 2.81 0.00 34.32 2.57
2906 3133 9.467258 CATGTGACTTGTGAGATTTTTGTAATT 57.533 29.630 0.00 0.00 0.00 1.40
2907 3134 8.632679 ACATGTGACTTGTGAGATTTTTGTAAT 58.367 29.630 0.00 0.00 0.00 1.89
2908 3135 7.995289 ACATGTGACTTGTGAGATTTTTGTAA 58.005 30.769 0.00 0.00 0.00 2.41
2911 3138 6.291955 GCAACATGTGACTTGTGAGATTTTTG 60.292 38.462 0.00 0.00 0.00 2.44
2912 3139 5.750067 GCAACATGTGACTTGTGAGATTTTT 59.250 36.000 0.00 0.00 0.00 1.94
2913 3140 5.163530 TGCAACATGTGACTTGTGAGATTTT 60.164 36.000 0.00 0.00 0.00 1.82
2914 3141 4.338964 TGCAACATGTGACTTGTGAGATTT 59.661 37.500 0.00 0.00 0.00 2.17
2916 3143 3.251729 GTGCAACATGTGACTTGTGAGAT 59.748 43.478 0.00 0.00 36.32 2.75
2938 4040 0.673437 GTAGGCAGCAGAGAGGCTAG 59.327 60.000 0.00 0.00 43.68 3.42
2951 4059 0.819582 GGCGTTAGTGGTAGTAGGCA 59.180 55.000 0.00 0.00 0.00 4.75
2952 4060 0.819582 TGGCGTTAGTGGTAGTAGGC 59.180 55.000 0.00 0.00 0.00 3.93
2976 4084 1.944032 AACCGTATTAAATCGCGCCT 58.056 45.000 0.00 0.00 0.00 5.52
3051 4159 5.668132 GCGTCGATGAGAAGGTAAAGTTTTC 60.668 44.000 9.31 0.00 0.00 2.29
3060 4168 0.029567 GATCGCGTCGATGAGAAGGT 59.970 55.000 15.17 0.00 47.00 3.50
3061 4169 2.789813 GATCGCGTCGATGAGAAGG 58.210 57.895 15.17 0.00 47.00 3.46
3099 4208 1.614996 CACATGCAGGGTGGTTGTAA 58.385 50.000 12.25 0.00 32.65 2.41
3100 4209 0.893270 GCACATGCAGGGTGGTTGTA 60.893 55.000 19.34 0.00 41.59 2.41
3101 4210 2.202395 GCACATGCAGGGTGGTTGT 61.202 57.895 19.34 2.49 41.59 3.32
3102 4211 1.904865 AGCACATGCAGGGTGGTTG 60.905 57.895 17.30 1.26 43.84 3.77
3103 4212 1.904865 CAGCACATGCAGGGTGGTT 60.905 57.895 19.62 0.00 43.84 3.67
3104 4213 2.282674 CAGCACATGCAGGGTGGT 60.283 61.111 17.30 17.30 46.91 4.16
3106 4215 1.904865 AACCAGCACATGCAGGGTG 60.905 57.895 18.34 15.02 46.42 4.61
3110 4219 0.390124 AACCAAACCAGCACATGCAG 59.610 50.000 6.64 0.00 45.16 4.41
3113 4222 1.540797 CCCAAACCAAACCAGCACATG 60.541 52.381 0.00 0.00 0.00 3.21
3114 4223 0.758123 CCCAAACCAAACCAGCACAT 59.242 50.000 0.00 0.00 0.00 3.21
3116 4225 1.227527 GCCCAAACCAAACCAGCAC 60.228 57.895 0.00 0.00 0.00 4.40
3117 4226 2.439104 GGCCCAAACCAAACCAGCA 61.439 57.895 0.00 0.00 0.00 4.41
3118 4227 1.767654 ATGGCCCAAACCAAACCAGC 61.768 55.000 0.00 0.00 44.65 4.85
3119 4228 1.275010 GTATGGCCCAAACCAAACCAG 59.725 52.381 0.00 0.00 44.65 4.00
3120 4229 1.343069 GTATGGCCCAAACCAAACCA 58.657 50.000 0.00 0.00 44.65 3.67
3122 4231 4.161377 ACATATGTATGGCCCAAACCAAAC 59.839 41.667 6.56 0.00 44.65 2.93
3124 4233 3.957497 GACATATGTATGGCCCAAACCAA 59.043 43.478 8.71 0.00 44.65 3.67
3125 4234 3.053320 TGACATATGTATGGCCCAAACCA 60.053 43.478 8.71 0.00 41.08 3.67
3138 4249 4.870426 GGATCGTTCACACTTGACATATGT 59.130 41.667 8.43 8.43 0.00 2.29
3142 4253 3.401033 TGGATCGTTCACACTTGACAT 57.599 42.857 0.00 0.00 0.00 3.06
3146 4257 3.362986 CGAGTTTGGATCGTTCACACTTG 60.363 47.826 0.00 0.00 35.48 3.16
3147 4258 2.800544 CGAGTTTGGATCGTTCACACTT 59.199 45.455 0.00 0.00 35.48 3.16
3148 4259 2.404215 CGAGTTTGGATCGTTCACACT 58.596 47.619 0.00 0.00 35.48 3.55
3176 4287 2.289565 GACATCATTTCCCTTCCCGAC 58.710 52.381 0.00 0.00 0.00 4.79
3184 4295 5.728637 AAAGAAACCTGACATCATTTCCC 57.271 39.130 4.93 0.00 32.56 3.97
3192 4322 7.497925 GTTTCAGAGTAAAGAAACCTGACAT 57.502 36.000 6.75 0.00 44.75 3.06
3219 4349 2.303022 TCAGATTTGGAGGTGTCTGTCC 59.697 50.000 0.00 0.00 39.22 4.02
3251 4383 0.171903 GGTGAAGGCACATGCATGTC 59.828 55.000 29.23 21.63 46.96 3.06
3252 4384 1.588824 CGGTGAAGGCACATGCATGT 61.589 55.000 26.61 26.61 46.96 3.21
3253 4385 1.138036 CGGTGAAGGCACATGCATG 59.862 57.895 25.09 25.09 46.96 4.06
3254 4386 2.703798 GCGGTGAAGGCACATGCAT 61.704 57.895 6.15 0.00 46.96 3.96
3255 4387 3.364441 GCGGTGAAGGCACATGCA 61.364 61.111 6.15 0.00 46.96 3.96
3256 4388 3.332493 CTGCGGTGAAGGCACATGC 62.332 63.158 0.00 0.00 46.96 4.06
3259 4391 2.280797 GACTGCGGTGAAGGCACA 60.281 61.111 0.80 0.00 46.96 4.57
3260 4392 2.280797 TGACTGCGGTGAAGGCAC 60.281 61.111 0.80 0.00 44.39 5.01
3261 4393 2.280797 GTGACTGCGGTGAAGGCA 60.281 61.111 0.80 0.00 38.92 4.75
3299 4431 1.446272 GAGCAGGTGCCACGTACTC 60.446 63.158 2.28 2.28 43.38 2.59
3312 4444 3.958147 ATGGCAACCGACCGAGCAG 62.958 63.158 0.00 0.00 0.00 4.24
3313 4445 4.015406 ATGGCAACCGACCGAGCA 62.015 61.111 0.00 0.00 0.00 4.26
3314 4446 3.499737 CATGGCAACCGACCGAGC 61.500 66.667 0.00 0.00 0.00 5.03
3315 4447 2.047274 ACATGGCAACCGACCGAG 60.047 61.111 0.00 0.00 0.00 4.63
3316 4448 2.047655 GACATGGCAACCGACCGA 60.048 61.111 0.00 0.00 0.00 4.69
3317 4449 3.487202 CGACATGGCAACCGACCG 61.487 66.667 0.00 0.00 0.00 4.79
3319 4451 3.124921 CCCGACATGGCAACCGAC 61.125 66.667 0.00 0.00 35.87 4.79
3351 4483 2.726760 GTGATCGATGTCCTGCGATAAC 59.273 50.000 0.54 0.00 46.13 1.89
3357 4489 1.211818 GAGCGTGATCGATGTCCTGC 61.212 60.000 0.54 0.00 39.71 4.85
3358 4490 0.101219 TGAGCGTGATCGATGTCCTG 59.899 55.000 0.54 0.00 39.71 3.86
3373 4505 3.193267 AGTCTTGTGATCTGAGACTGAGC 59.807 47.826 18.84 0.00 46.09 4.26
3482 4614 1.659262 CGCAAGACCGTTCGTACGTC 61.659 60.000 16.05 10.58 43.38 4.34
3513 4645 1.239296 TAGTTTGCTGCTGCCTGCTG 61.239 55.000 13.47 0.00 43.37 4.41
3514 4646 0.538057 TTAGTTTGCTGCTGCCTGCT 60.538 50.000 13.47 10.03 43.37 4.24
3515 4647 0.529378 ATTAGTTTGCTGCTGCCTGC 59.471 50.000 13.47 7.61 43.25 4.85
3516 4648 1.133790 GGATTAGTTTGCTGCTGCCTG 59.866 52.381 13.47 0.00 38.71 4.85
3517 4649 1.467920 GGATTAGTTTGCTGCTGCCT 58.532 50.000 13.47 5.64 38.71 4.75
3518 4650 0.099436 CGGATTAGTTTGCTGCTGCC 59.901 55.000 13.47 0.00 38.71 4.85
3519 4651 0.804989 ACGGATTAGTTTGCTGCTGC 59.195 50.000 8.89 8.89 40.20 5.25
3551 4683 2.185004 AACCCTGACAGAATTCACCG 57.815 50.000 8.44 0.00 0.00 4.94
3552 4684 6.884836 ACTTATTAACCCTGACAGAATTCACC 59.115 38.462 8.44 0.00 0.00 4.02
3593 4726 4.094294 GCAACACACAGTCAGTACTTCAAA 59.906 41.667 0.00 0.00 31.97 2.69
3594 4727 3.621268 GCAACACACAGTCAGTACTTCAA 59.379 43.478 0.00 0.00 31.97 2.69
3595 4728 3.118775 AGCAACACACAGTCAGTACTTCA 60.119 43.478 0.00 0.00 31.97 3.02
3618 4751 1.005340 CTCGAAATCTGCAGCTGTCC 58.995 55.000 16.64 0.00 0.00 4.02
4465 5601 4.103103 TCGTCGAGCGTGCTGGAG 62.103 66.667 6.82 2.59 42.13 3.86
4669 5805 1.655329 GAGGATGGAGTAGGCGTCG 59.345 63.158 0.00 0.00 0.00 5.12
5091 6233 8.413309 TGTACACCACTTAATCAACTACTAGT 57.587 34.615 0.00 0.00 0.00 2.57
5092 6234 9.302345 CATGTACACCACTTAATCAACTACTAG 57.698 37.037 0.00 0.00 0.00 2.57
5093 6235 7.762615 GCATGTACACCACTTAATCAACTACTA 59.237 37.037 0.00 0.00 0.00 1.82
5094 6236 6.594159 GCATGTACACCACTTAATCAACTACT 59.406 38.462 0.00 0.00 0.00 2.57
5095 6237 6.370442 TGCATGTACACCACTTAATCAACTAC 59.630 38.462 0.00 0.00 0.00 2.73
5096 6238 6.468543 TGCATGTACACCACTTAATCAACTA 58.531 36.000 0.00 0.00 0.00 2.24
5168 6315 4.094887 AGCAGTAATATGTTTTGTGCTCGG 59.905 41.667 0.00 0.00 34.79 4.63
5385 6534 6.015095 AGGAGCAATTTTTGAAGTTCTAAGGG 60.015 38.462 4.17 0.00 0.00 3.95
5448 6597 8.920509 TCTGCAAAGATCACATCAATAAAATG 57.079 30.769 0.00 0.00 0.00 2.32
5452 6601 8.283699 TGATTCTGCAAAGATCACATCAATAA 57.716 30.769 0.00 0.00 0.00 1.40
5500 6649 3.057736 ACAGCACAGCTTGAAATCATGTC 60.058 43.478 0.00 0.00 36.40 3.06
5514 6663 2.485426 CTCCATACCACAAACAGCACAG 59.515 50.000 0.00 0.00 0.00 3.66
5521 6670 4.398044 CACCCAATACTCCATACCACAAAC 59.602 45.833 0.00 0.00 0.00 2.93
5582 6731 2.427320 GGAGCGGCATCATAGGCA 59.573 61.111 1.45 0.00 0.00 4.75
5594 6743 2.508867 CAACAAAATGTGATCGGAGCG 58.491 47.619 0.00 0.00 0.00 5.03
5633 6784 5.177142 CGATCTTTGTCACCATGATCTCATC 59.823 44.000 0.00 0.00 33.61 2.92
5696 6847 5.301835 AGGGATCCATTGACTAATGACTG 57.698 43.478 15.23 0.00 45.21 3.51
5713 6864 2.092646 TGCAGCCGTACAAAATAGGGAT 60.093 45.455 0.00 0.00 0.00 3.85
5728 6879 7.495279 TGAAATATGGAATTACAAATTGCAGCC 59.505 33.333 11.37 0.00 33.06 4.85
5730 6881 9.368674 TGTGAAATATGGAATTACAAATTGCAG 57.631 29.630 11.37 0.00 33.06 4.41
5762 6913 6.877322 ACGTAGTACTATTTTCCTTGCAACAT 59.123 34.615 5.75 0.00 41.94 2.71
5764 6915 6.716898 ACGTAGTACTATTTTCCTTGCAAC 57.283 37.500 5.75 0.00 41.94 4.17
5784 6935 9.772973 TCATTTAGTTATGATAGCCAATTACGT 57.227 29.630 0.00 0.00 29.82 3.57
5838 6990 1.204704 TCTTGTAGCAGTCACCGATGG 59.795 52.381 0.00 0.00 0.00 3.51
5843 6995 2.433868 TTCGTCTTGTAGCAGTCACC 57.566 50.000 0.00 0.00 0.00 4.02
5859 7011 5.551760 ATCCAAGCACTAATGTTCTTTCG 57.448 39.130 0.00 0.00 27.56 3.46
5876 7028 3.669536 TGAACATACTGCAACGATCCAA 58.330 40.909 0.00 0.00 0.00 3.53
5882 7034 4.263677 GCAATGATTGAACATACTGCAACG 59.736 41.667 9.76 0.00 35.43 4.10
5889 7041 7.872163 TCTTTGTTGCAATGATTGAACATAC 57.128 32.000 9.76 0.00 33.77 2.39
5892 7044 6.817641 ACTTTCTTTGTTGCAATGATTGAACA 59.182 30.769 9.76 12.89 32.71 3.18
5896 7048 7.697352 TGTACTTTCTTTGTTGCAATGATTG 57.303 32.000 0.59 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.