Multiple sequence alignment - TraesCS6A01G283300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G283300 chr6A 100.000 2787 0 0 1 2787 514354618 514351832 0.000000e+00 5147
1 TraesCS6A01G283300 chr6A 99.871 1554 2 0 74 1627 514347560 514346007 0.000000e+00 2859
2 TraesCS6A01G283300 chr6A 93.011 186 12 1 2602 2787 507807249 507807433 1.270000e-68 270
3 TraesCS6A01G283300 chr6A 75.593 295 45 20 2199 2475 159837437 159837722 1.360000e-23 121
4 TraesCS6A01G283300 chr6B 99.634 2183 8 0 1 2183 710146770 710148952 0.000000e+00 3988
5 TraesCS6A01G283300 chr6B 93.227 251 11 4 1891 2135 149616946 149616696 5.670000e-97 364
6 TraesCS6A01G283300 chr1A 99.221 2183 15 2 1 2183 54010361 54008181 0.000000e+00 3936
7 TraesCS6A01G283300 chr1A 97.557 1187 24 3 998 2183 109429631 109428449 0.000000e+00 2026
8 TraesCS6A01G283300 chr1A 94.433 970 35 5 1 970 109430790 109429840 0.000000e+00 1474
9 TraesCS6A01G283300 chr1A 91.573 178 15 0 2605 2782 413415694 413415517 2.140000e-61 246
10 TraesCS6A01G283300 chr1A 97.368 114 3 0 2199 2312 376752998 376753111 7.880000e-46 195
11 TraesCS6A01G283300 chr1A 90.000 120 11 1 2663 2782 100596490 100596372 1.340000e-33 154
12 TraesCS6A01G283300 chr1A 88.095 126 12 3 2183 2307 27382891 27382768 2.240000e-31 147
13 TraesCS6A01G283300 chr4A 97.302 1186 29 1 998 2183 76385223 76384041 0.000000e+00 2010
14 TraesCS6A01G283300 chr4A 94.330 970 34 6 1 970 76386379 76385431 0.000000e+00 1467
15 TraesCS6A01G283300 chr4A 89.841 502 31 6 1474 1972 420515787 420516271 6.550000e-176 627
16 TraesCS6A01G283300 chr4A 90.090 444 30 6 1711 2140 207970503 207970946 5.210000e-157 564
17 TraesCS6A01G283300 chr4D 83.639 764 105 13 1 759 494290605 494289857 0.000000e+00 701
18 TraesCS6A01G283300 chr5B 89.841 502 31 4 1474 1972 163065997 163066481 6.550000e-176 627
19 TraesCS6A01G283300 chr5B 93.385 257 8 3 2361 2608 660217707 660217451 3.390000e-99 372
20 TraesCS6A01G283300 chr5B 98.261 115 2 0 2199 2313 664886026 664886140 4.710000e-48 202
21 TraesCS6A01G283300 chr1B 89.841 502 31 4 1474 1972 558565925 558566409 6.550000e-176 627
22 TraesCS6A01G283300 chr1B 93.227 251 11 4 1891 2135 613030663 613030913 5.670000e-97 364
23 TraesCS6A01G283300 chr1B 94.382 178 10 0 2605 2782 600531775 600531952 9.830000e-70 274
24 TraesCS6A01G283300 chr1B 76.316 304 39 20 2199 2480 684036642 684036934 6.260000e-27 132
25 TraesCS6A01G283300 chr7A 92.308 429 28 4 1716 2140 9390870 9390443 3.070000e-169 604
26 TraesCS6A01G283300 chr7A 83.673 539 78 8 995 1526 731681682 731682217 1.490000e-137 499
27 TraesCS6A01G283300 chr7A 89.326 178 16 2 2605 2782 107989580 107989406 1.300000e-53 220
28 TraesCS6A01G283300 chr7A 86.432 199 14 6 2602 2787 172070382 172070580 3.640000e-49 206
29 TraesCS6A01G283300 chr7A 92.199 141 10 1 2648 2787 142307394 142307534 6.090000e-47 198
30 TraesCS6A01G283300 chr7A 74.925 335 46 27 2200 2510 111113157 111112837 4.880000e-23 119
31 TraesCS6A01G283300 chr7A 75.338 296 43 20 2200 2475 111149596 111149311 6.310000e-22 115
32 TraesCS6A01G283300 chr7B 91.841 429 30 4 1716 2140 607311027 607310600 6.650000e-166 593
33 TraesCS6A01G283300 chr7B 91.850 319 20 1 1350 1662 607311344 607311026 9.160000e-120 440
34 TraesCS6A01G283300 chr7B 76.023 342 43 24 2199 2515 567583664 567583337 1.040000e-29 141
35 TraesCS6A01G283300 chr7D 82.721 544 78 10 995 1526 634572381 634571842 1.170000e-128 470
36 TraesCS6A01G283300 chr7D 95.882 170 7 0 2618 2787 597715519 597715350 2.730000e-70 276
37 TraesCS6A01G283300 chr2D 93.443 305 17 2 998 1302 242903620 242903319 1.520000e-122 449
38 TraesCS6A01G283300 chr2D 96.491 114 4 0 2199 2312 453704753 453704866 3.660000e-44 189
39 TraesCS6A01G283300 chrUn 93.200 250 12 4 1891 2135 49430287 49430038 2.040000e-96 363
40 TraesCS6A01G283300 chrUn 87.156 109 9 4 2361 2464 122079827 122079935 4.880000e-23 119
41 TraesCS6A01G283300 chr3B 95.082 183 9 0 2605 2787 13233290 13233108 3.510000e-74 289
42 TraesCS6A01G283300 chr5A 99.123 114 1 0 2199 2312 708189977 708190090 3.640000e-49 206
43 TraesCS6A01G283300 chr5A 95.122 123 5 1 2190 2312 622116205 622116084 2.830000e-45 193
44 TraesCS6A01G283300 chr5A 81.618 136 17 6 2361 2491 103126991 103126859 3.800000e-19 106
45 TraesCS6A01G283300 chr2A 83.036 224 34 3 1307 1526 180217315 180217092 1.690000e-47 200
46 TraesCS6A01G283300 chr2A 87.156 109 9 4 2361 2464 385326851 385326743 4.880000e-23 119
47 TraesCS6A01G283300 chr4B 97.368 114 3 0 2199 2312 25011645 25011532 7.880000e-46 195
48 TraesCS6A01G283300 chr2B 92.437 119 9 0 2194 2312 775420181 775420063 1.330000e-38 171
49 TraesCS6A01G283300 chr2B 92.105 114 9 0 2199 2312 128530549 128530662 7.990000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G283300 chr6A 514351832 514354618 2786 True 5147.0 5147 100.0000 1 2787 1 chr6A.!!$R2 2786
1 TraesCS6A01G283300 chr6A 514346007 514347560 1553 True 2859.0 2859 99.8710 74 1627 1 chr6A.!!$R1 1553
2 TraesCS6A01G283300 chr6B 710146770 710148952 2182 False 3988.0 3988 99.6340 1 2183 1 chr6B.!!$F1 2182
3 TraesCS6A01G283300 chr1A 54008181 54010361 2180 True 3936.0 3936 99.2210 1 2183 1 chr1A.!!$R2 2182
4 TraesCS6A01G283300 chr1A 109428449 109430790 2341 True 1750.0 2026 95.9950 1 2183 2 chr1A.!!$R5 2182
5 TraesCS6A01G283300 chr4A 76384041 76386379 2338 True 1738.5 2010 95.8160 1 2183 2 chr4A.!!$R1 2182
6 TraesCS6A01G283300 chr4D 494289857 494290605 748 True 701.0 701 83.6390 1 759 1 chr4D.!!$R1 758
7 TraesCS6A01G283300 chr7A 731681682 731682217 535 False 499.0 499 83.6730 995 1526 1 chr7A.!!$F3 531
8 TraesCS6A01G283300 chr7B 607310600 607311344 744 True 516.5 593 91.8455 1350 2140 2 chr7B.!!$R2 790
9 TraesCS6A01G283300 chr7D 634571842 634572381 539 True 470.0 470 82.7210 995 1526 1 chr7D.!!$R2 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 2090 2.281484 GCCTGTTGTCCGCCTTCA 60.281 61.111 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2740 2974 0.251354 GCCATGGACTGCAGAGAGAA 59.749 55.0 23.35 1.0 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1860 2090 2.281484 GCCTGTTGTCCGCCTTCA 60.281 61.111 0.00 0.00 0.00 3.02
2183 2417 6.408858 TCGTAATGACTTGAAGAAAGCATC 57.591 37.500 0.00 0.00 39.76 3.91
2184 2418 6.166279 TCGTAATGACTTGAAGAAAGCATCT 58.834 36.000 0.00 0.00 39.76 2.90
2185 2419 7.320399 TCGTAATGACTTGAAGAAAGCATCTA 58.680 34.615 0.00 0.00 39.76 1.98
2186 2420 7.981789 TCGTAATGACTTGAAGAAAGCATCTAT 59.018 33.333 0.00 0.00 39.76 1.98
2187 2421 8.272176 CGTAATGACTTGAAGAAAGCATCTATC 58.728 37.037 0.00 0.00 39.76 2.08
2188 2422 9.323985 GTAATGACTTGAAGAAAGCATCTATCT 57.676 33.333 0.00 0.00 39.76 1.98
2191 2425 9.709495 ATGACTTGAAGAAAGCATCTATCTATC 57.291 33.333 0.00 0.00 39.76 2.08
2192 2426 8.922237 TGACTTGAAGAAAGCATCTATCTATCT 58.078 33.333 0.00 0.00 39.76 1.98
2226 2460 8.080363 ACTACCACTATAAAAGAAAGAGAGGG 57.920 38.462 0.00 0.00 0.00 4.30
2227 2461 6.314899 ACCACTATAAAAGAAAGAGAGGGG 57.685 41.667 0.00 0.00 0.00 4.79
2228 2462 5.126779 CCACTATAAAAGAAAGAGAGGGGC 58.873 45.833 0.00 0.00 0.00 5.80
2229 2463 5.339200 CCACTATAAAAGAAAGAGAGGGGCA 60.339 44.000 0.00 0.00 0.00 5.36
2230 2464 5.819901 CACTATAAAAGAAAGAGAGGGGCAG 59.180 44.000 0.00 0.00 0.00 4.85
2231 2465 5.726793 ACTATAAAAGAAAGAGAGGGGCAGA 59.273 40.000 0.00 0.00 0.00 4.26
2232 2466 5.723860 ATAAAAGAAAGAGAGGGGCAGAT 57.276 39.130 0.00 0.00 0.00 2.90
2233 2467 3.643199 AAAGAAAGAGAGGGGCAGATC 57.357 47.619 0.00 0.00 0.00 2.75
2234 2468 1.506025 AGAAAGAGAGGGGCAGATCC 58.494 55.000 0.00 0.00 0.00 3.36
2235 2469 1.207791 GAAAGAGAGGGGCAGATCCA 58.792 55.000 0.00 0.00 36.21 3.41
2236 2470 1.561542 GAAAGAGAGGGGCAGATCCAA 59.438 52.381 0.00 0.00 36.21 3.53
2237 2471 1.673767 AAGAGAGGGGCAGATCCAAA 58.326 50.000 0.00 0.00 36.21 3.28
2238 2472 0.915364 AGAGAGGGGCAGATCCAAAC 59.085 55.000 0.00 0.00 36.21 2.93
2239 2473 0.620556 GAGAGGGGCAGATCCAAACA 59.379 55.000 0.00 0.00 36.21 2.83
2240 2474 1.004745 GAGAGGGGCAGATCCAAACAA 59.995 52.381 0.00 0.00 36.21 2.83
2241 2475 1.642762 AGAGGGGCAGATCCAAACAAT 59.357 47.619 0.00 0.00 36.21 2.71
2242 2476 2.027385 GAGGGGCAGATCCAAACAATC 58.973 52.381 0.00 0.00 36.21 2.67
2243 2477 1.358787 AGGGGCAGATCCAAACAATCA 59.641 47.619 0.00 0.00 36.21 2.57
2244 2478 1.478105 GGGGCAGATCCAAACAATCAC 59.522 52.381 0.00 0.00 36.21 3.06
2245 2479 2.170166 GGGCAGATCCAAACAATCACA 58.830 47.619 0.00 0.00 36.21 3.58
2246 2480 2.094545 GGGCAGATCCAAACAATCACAC 60.095 50.000 0.00 0.00 36.21 3.82
2247 2481 2.094545 GGCAGATCCAAACAATCACACC 60.095 50.000 0.00 0.00 34.01 4.16
2248 2482 2.094545 GCAGATCCAAACAATCACACCC 60.095 50.000 0.00 0.00 0.00 4.61
2249 2483 3.156293 CAGATCCAAACAATCACACCCA 58.844 45.455 0.00 0.00 0.00 4.51
2250 2484 3.765511 CAGATCCAAACAATCACACCCAT 59.234 43.478 0.00 0.00 0.00 4.00
2251 2485 4.019174 AGATCCAAACAATCACACCCATC 58.981 43.478 0.00 0.00 0.00 3.51
2252 2486 2.524306 TCCAAACAATCACACCCATCC 58.476 47.619 0.00 0.00 0.00 3.51
2253 2487 2.158400 TCCAAACAATCACACCCATCCA 60.158 45.455 0.00 0.00 0.00 3.41
2254 2488 2.833338 CCAAACAATCACACCCATCCAT 59.167 45.455 0.00 0.00 0.00 3.41
2255 2489 3.119029 CCAAACAATCACACCCATCCATC 60.119 47.826 0.00 0.00 0.00 3.51
2256 2490 3.454719 AACAATCACACCCATCCATCA 57.545 42.857 0.00 0.00 0.00 3.07
2257 2491 3.675348 ACAATCACACCCATCCATCAT 57.325 42.857 0.00 0.00 0.00 2.45
2258 2492 3.559069 ACAATCACACCCATCCATCATC 58.441 45.455 0.00 0.00 0.00 2.92
2259 2493 3.053470 ACAATCACACCCATCCATCATCA 60.053 43.478 0.00 0.00 0.00 3.07
2260 2494 3.955551 CAATCACACCCATCCATCATCAA 59.044 43.478 0.00 0.00 0.00 2.57
2261 2495 3.286329 TCACACCCATCCATCATCAAG 57.714 47.619 0.00 0.00 0.00 3.02
2262 2496 2.845586 TCACACCCATCCATCATCAAGA 59.154 45.455 0.00 0.00 0.00 3.02
2263 2497 3.460712 TCACACCCATCCATCATCAAGAT 59.539 43.478 0.00 0.00 37.48 2.40
2264 2498 3.819337 CACACCCATCCATCATCAAGATC 59.181 47.826 0.00 0.00 33.72 2.75
2265 2499 3.720526 ACACCCATCCATCATCAAGATCT 59.279 43.478 0.00 0.00 33.72 2.75
2266 2500 4.909695 ACACCCATCCATCATCAAGATCTA 59.090 41.667 0.00 0.00 33.72 1.98
2267 2501 5.370584 ACACCCATCCATCATCAAGATCTAA 59.629 40.000 0.00 0.00 33.72 2.10
2268 2502 6.045224 ACACCCATCCATCATCAAGATCTAAT 59.955 38.462 0.00 0.00 33.72 1.73
2269 2503 6.374613 CACCCATCCATCATCAAGATCTAATG 59.625 42.308 10.43 10.43 33.72 1.90
2270 2504 5.886474 CCCATCCATCATCAAGATCTAATGG 59.114 44.000 14.75 13.19 37.10 3.16
2271 2505 6.482524 CCATCCATCATCAAGATCTAATGGT 58.517 40.000 14.75 7.74 34.93 3.55
2272 2506 6.598457 CCATCCATCATCAAGATCTAATGGTC 59.402 42.308 14.75 0.00 34.93 4.02
2273 2507 6.119240 TCCATCATCAAGATCTAATGGTCC 57.881 41.667 14.75 0.00 36.04 4.46
2274 2508 5.608015 TCCATCATCAAGATCTAATGGTCCA 59.392 40.000 14.75 0.00 36.04 4.02
2275 2509 6.273965 TCCATCATCAAGATCTAATGGTCCAT 59.726 38.462 14.75 0.00 36.04 3.41
2276 2510 6.374613 CCATCATCAAGATCTAATGGTCCATG 59.625 42.308 4.74 11.46 33.72 3.66
2277 2511 5.872963 TCATCAAGATCTAATGGTCCATGG 58.127 41.667 4.97 4.97 0.00 3.66
2278 2512 5.370584 TCATCAAGATCTAATGGTCCATGGT 59.629 40.000 12.58 0.00 0.00 3.55
2279 2513 5.039920 TCAAGATCTAATGGTCCATGGTG 57.960 43.478 12.58 0.00 0.00 4.17
2280 2514 4.474651 TCAAGATCTAATGGTCCATGGTGT 59.525 41.667 12.58 0.00 0.00 4.16
2281 2515 4.696479 AGATCTAATGGTCCATGGTGTC 57.304 45.455 12.58 3.79 0.00 3.67
2282 2516 4.302067 AGATCTAATGGTCCATGGTGTCT 58.698 43.478 12.58 4.86 0.00 3.41
2283 2517 4.346418 AGATCTAATGGTCCATGGTGTCTC 59.654 45.833 12.58 0.00 0.00 3.36
2284 2518 3.724478 TCTAATGGTCCATGGTGTCTCT 58.276 45.455 12.58 0.00 0.00 3.10
2285 2519 4.878968 TCTAATGGTCCATGGTGTCTCTA 58.121 43.478 12.58 0.00 0.00 2.43
2286 2520 5.467738 TCTAATGGTCCATGGTGTCTCTAT 58.532 41.667 12.58 0.00 0.00 1.98
2287 2521 4.428294 AATGGTCCATGGTGTCTCTATG 57.572 45.455 12.58 0.00 35.26 2.23
2288 2522 2.832838 TGGTCCATGGTGTCTCTATGT 58.167 47.619 12.58 0.00 33.93 2.29
2289 2523 3.181329 TGGTCCATGGTGTCTCTATGTT 58.819 45.455 12.58 0.00 33.93 2.71
2290 2524 3.587061 TGGTCCATGGTGTCTCTATGTTT 59.413 43.478 12.58 0.00 33.93 2.83
2291 2525 4.780554 TGGTCCATGGTGTCTCTATGTTTA 59.219 41.667 12.58 0.00 33.93 2.01
2292 2526 5.249622 TGGTCCATGGTGTCTCTATGTTTAA 59.750 40.000 12.58 0.00 33.93 1.52
2293 2527 5.585047 GGTCCATGGTGTCTCTATGTTTAAC 59.415 44.000 12.58 0.00 33.93 2.01
2294 2528 6.170506 GTCCATGGTGTCTCTATGTTTAACA 58.829 40.000 12.58 0.00 33.93 2.41
2295 2529 6.092259 GTCCATGGTGTCTCTATGTTTAACAC 59.908 42.308 12.58 0.00 39.53 3.32
2296 2530 6.013725 TCCATGGTGTCTCTATGTTTAACACT 60.014 38.462 12.58 0.00 40.01 3.55
2297 2531 7.179516 TCCATGGTGTCTCTATGTTTAACACTA 59.820 37.037 12.58 0.00 40.01 2.74
2298 2532 7.492669 CCATGGTGTCTCTATGTTTAACACTAG 59.507 40.741 2.57 4.39 40.01 2.57
2299 2533 6.395629 TGGTGTCTCTATGTTTAACACTAGC 58.604 40.000 0.00 0.00 40.01 3.42
2300 2534 6.014925 TGGTGTCTCTATGTTTAACACTAGCA 60.015 38.462 0.00 0.00 40.01 3.49
2301 2535 6.872020 GGTGTCTCTATGTTTAACACTAGCAA 59.128 38.462 0.00 0.00 40.01 3.91
2302 2536 7.063544 GGTGTCTCTATGTTTAACACTAGCAAG 59.936 40.741 0.00 0.05 40.01 4.01
2303 2537 6.590292 TGTCTCTATGTTTAACACTAGCAAGC 59.410 38.462 0.00 0.00 0.00 4.01
2304 2538 6.036191 GTCTCTATGTTTAACACTAGCAAGCC 59.964 42.308 0.00 0.00 0.00 4.35
2305 2539 5.800296 TCTATGTTTAACACTAGCAAGCCA 58.200 37.500 0.00 0.00 0.00 4.75
2306 2540 4.766404 ATGTTTAACACTAGCAAGCCAC 57.234 40.909 0.00 0.00 0.00 5.01
2307 2541 3.815809 TGTTTAACACTAGCAAGCCACT 58.184 40.909 0.00 0.00 0.00 4.00
2308 2542 4.963373 TGTTTAACACTAGCAAGCCACTA 58.037 39.130 0.00 0.00 0.00 2.74
2309 2543 5.369833 TGTTTAACACTAGCAAGCCACTAA 58.630 37.500 0.00 0.00 0.00 2.24
2310 2544 6.001460 TGTTTAACACTAGCAAGCCACTAAT 58.999 36.000 0.00 0.00 0.00 1.73
2311 2545 6.148811 TGTTTAACACTAGCAAGCCACTAATC 59.851 38.462 0.00 0.00 0.00 1.75
2312 2546 4.559862 AACACTAGCAAGCCACTAATCT 57.440 40.909 0.00 0.00 0.00 2.40
2313 2547 4.130286 ACACTAGCAAGCCACTAATCTC 57.870 45.455 0.00 0.00 0.00 2.75
2314 2548 3.118592 ACACTAGCAAGCCACTAATCTCC 60.119 47.826 0.00 0.00 0.00 3.71
2315 2549 2.436173 ACTAGCAAGCCACTAATCTCCC 59.564 50.000 0.00 0.00 0.00 4.30
2316 2550 1.589414 AGCAAGCCACTAATCTCCCT 58.411 50.000 0.00 0.00 0.00 4.20
2317 2551 2.764269 AGCAAGCCACTAATCTCCCTA 58.236 47.619 0.00 0.00 0.00 3.53
2318 2552 3.115390 AGCAAGCCACTAATCTCCCTAA 58.885 45.455 0.00 0.00 0.00 2.69
2319 2553 3.118223 AGCAAGCCACTAATCTCCCTAAC 60.118 47.826 0.00 0.00 0.00 2.34
2320 2554 3.370527 GCAAGCCACTAATCTCCCTAACA 60.371 47.826 0.00 0.00 0.00 2.41
2321 2555 4.192317 CAAGCCACTAATCTCCCTAACAC 58.808 47.826 0.00 0.00 0.00 3.32
2322 2556 3.450904 AGCCACTAATCTCCCTAACACA 58.549 45.455 0.00 0.00 0.00 3.72
2323 2557 3.844211 AGCCACTAATCTCCCTAACACAA 59.156 43.478 0.00 0.00 0.00 3.33
2324 2558 3.939592 GCCACTAATCTCCCTAACACAAC 59.060 47.826 0.00 0.00 0.00 3.32
2325 2559 4.564821 GCCACTAATCTCCCTAACACAACA 60.565 45.833 0.00 0.00 0.00 3.33
2326 2560 5.556915 CCACTAATCTCCCTAACACAACAA 58.443 41.667 0.00 0.00 0.00 2.83
2327 2561 5.643777 CCACTAATCTCCCTAACACAACAAG 59.356 44.000 0.00 0.00 0.00 3.16
2328 2562 5.122396 CACTAATCTCCCTAACACAACAAGC 59.878 44.000 0.00 0.00 0.00 4.01
2329 2563 2.561478 TCTCCCTAACACAACAAGCC 57.439 50.000 0.00 0.00 0.00 4.35
2330 2564 1.771854 TCTCCCTAACACAACAAGCCA 59.228 47.619 0.00 0.00 0.00 4.75
2331 2565 1.880027 CTCCCTAACACAACAAGCCAC 59.120 52.381 0.00 0.00 0.00 5.01
2332 2566 1.213182 TCCCTAACACAACAAGCCACA 59.787 47.619 0.00 0.00 0.00 4.17
2333 2567 1.336755 CCCTAACACAACAAGCCACAC 59.663 52.381 0.00 0.00 0.00 3.82
2334 2568 2.020720 CCTAACACAACAAGCCACACA 58.979 47.619 0.00 0.00 0.00 3.72
2335 2569 2.425312 CCTAACACAACAAGCCACACAA 59.575 45.455 0.00 0.00 0.00 3.33
2336 2570 3.068024 CCTAACACAACAAGCCACACAAT 59.932 43.478 0.00 0.00 0.00 2.71
2337 2571 3.608316 AACACAACAAGCCACACAATT 57.392 38.095 0.00 0.00 0.00 2.32
2338 2572 4.727507 AACACAACAAGCCACACAATTA 57.272 36.364 0.00 0.00 0.00 1.40
2339 2573 4.727507 ACACAACAAGCCACACAATTAA 57.272 36.364 0.00 0.00 0.00 1.40
2340 2574 4.681744 ACACAACAAGCCACACAATTAAG 58.318 39.130 0.00 0.00 0.00 1.85
2341 2575 3.490526 CACAACAAGCCACACAATTAAGC 59.509 43.478 0.00 0.00 0.00 3.09
2342 2576 3.059166 CAACAAGCCACACAATTAAGCC 58.941 45.455 0.00 0.00 0.00 4.35
2343 2577 1.618343 ACAAGCCACACAATTAAGCCC 59.382 47.619 0.00 0.00 0.00 5.19
2344 2578 1.066929 CAAGCCACACAATTAAGCCCC 60.067 52.381 0.00 0.00 0.00 5.80
2345 2579 0.965363 AGCCACACAATTAAGCCCCG 60.965 55.000 0.00 0.00 0.00 5.73
2346 2580 1.510844 CCACACAATTAAGCCCCGC 59.489 57.895 0.00 0.00 0.00 6.13
2347 2581 1.247419 CCACACAATTAAGCCCCGCA 61.247 55.000 0.00 0.00 0.00 5.69
2348 2582 0.109319 CACACAATTAAGCCCCGCAC 60.109 55.000 0.00 0.00 0.00 5.34
2349 2583 0.538516 ACACAATTAAGCCCCGCACA 60.539 50.000 0.00 0.00 0.00 4.57
2350 2584 0.109319 CACAATTAAGCCCCGCACAC 60.109 55.000 0.00 0.00 0.00 3.82
2351 2585 1.248101 ACAATTAAGCCCCGCACACC 61.248 55.000 0.00 0.00 0.00 4.16
2352 2586 1.680989 AATTAAGCCCCGCACACCC 60.681 57.895 0.00 0.00 0.00 4.61
2353 2587 3.655350 ATTAAGCCCCGCACACCCC 62.655 63.158 0.00 0.00 0.00 4.95
2361 2595 4.953868 CGCACACCCCGTTCGACA 62.954 66.667 0.00 0.00 36.24 4.35
2362 2596 3.343421 GCACACCCCGTTCGACAC 61.343 66.667 0.00 0.00 0.00 3.67
2370 2604 4.679690 CGTTCGACACGCACGCAC 62.680 66.667 3.56 0.00 43.37 5.34
2371 2605 4.679690 GTTCGACACGCACGCACG 62.680 66.667 0.00 0.00 39.50 5.34
2387 2621 4.096003 CGCCCCCACCACGATCTT 62.096 66.667 0.00 0.00 0.00 2.40
2388 2622 2.355115 GCCCCCACCACGATCTTT 59.645 61.111 0.00 0.00 0.00 2.52
2389 2623 1.749258 GCCCCCACCACGATCTTTC 60.749 63.158 0.00 0.00 0.00 2.62
2390 2624 1.077716 CCCCCACCACGATCTTTCC 60.078 63.158 0.00 0.00 0.00 3.13
2391 2625 1.077716 CCCCACCACGATCTTTCCC 60.078 63.158 0.00 0.00 0.00 3.97
2392 2626 1.682849 CCCACCACGATCTTTCCCA 59.317 57.895 0.00 0.00 0.00 4.37
2393 2627 0.676782 CCCACCACGATCTTTCCCAC 60.677 60.000 0.00 0.00 0.00 4.61
2394 2628 1.019278 CCACCACGATCTTTCCCACG 61.019 60.000 0.00 0.00 0.00 4.94
2395 2629 1.375523 ACCACGATCTTTCCCACGC 60.376 57.895 0.00 0.00 0.00 5.34
2396 2630 2.106683 CCACGATCTTTCCCACGCC 61.107 63.158 0.00 0.00 0.00 5.68
2397 2631 2.106683 CACGATCTTTCCCACGCCC 61.107 63.158 0.00 0.00 0.00 6.13
2398 2632 2.890474 CGATCTTTCCCACGCCCG 60.890 66.667 0.00 0.00 0.00 6.13
2399 2633 3.202706 GATCTTTCCCACGCCCGC 61.203 66.667 0.00 0.00 0.00 6.13
2400 2634 3.969250 GATCTTTCCCACGCCCGCA 62.969 63.158 0.00 0.00 0.00 5.69
2414 2648 3.003173 CGCACCTCCTCCTCCCAA 61.003 66.667 0.00 0.00 0.00 4.12
2415 2649 2.671682 GCACCTCCTCCTCCCAAC 59.328 66.667 0.00 0.00 0.00 3.77
2416 2650 2.982130 CACCTCCTCCTCCCAACG 59.018 66.667 0.00 0.00 0.00 4.10
2417 2651 1.609501 CACCTCCTCCTCCCAACGA 60.610 63.158 0.00 0.00 0.00 3.85
2418 2652 1.609794 ACCTCCTCCTCCCAACGAC 60.610 63.158 0.00 0.00 0.00 4.34
2419 2653 2.359967 CCTCCTCCTCCCAACGACC 61.360 68.421 0.00 0.00 0.00 4.79
2420 2654 1.609501 CTCCTCCTCCCAACGACCA 60.610 63.158 0.00 0.00 0.00 4.02
2421 2655 1.608717 CTCCTCCTCCCAACGACCAG 61.609 65.000 0.00 0.00 0.00 4.00
2422 2656 1.609501 CCTCCTCCCAACGACCAGA 60.610 63.158 0.00 0.00 0.00 3.86
2423 2657 1.608717 CCTCCTCCCAACGACCAGAG 61.609 65.000 0.00 0.00 0.00 3.35
2424 2658 2.232298 CTCCTCCCAACGACCAGAGC 62.232 65.000 0.00 0.00 0.00 4.09
2425 2659 2.583441 CCTCCCAACGACCAGAGCA 61.583 63.158 0.00 0.00 0.00 4.26
2426 2660 1.374758 CTCCCAACGACCAGAGCAC 60.375 63.158 0.00 0.00 0.00 4.40
2427 2661 2.738521 CCCAACGACCAGAGCACG 60.739 66.667 0.00 0.00 0.00 5.34
2428 2662 2.738521 CCAACGACCAGAGCACGG 60.739 66.667 0.00 0.00 0.00 4.94
2429 2663 3.414700 CAACGACCAGAGCACGGC 61.415 66.667 0.00 0.00 0.00 5.68
2430 2664 4.681978 AACGACCAGAGCACGGCC 62.682 66.667 0.00 0.00 0.00 6.13
2466 2700 4.925861 GCTGCTCGCCCATCCTCC 62.926 72.222 0.00 0.00 0.00 4.30
2467 2701 4.598894 CTGCTCGCCCATCCTCCG 62.599 72.222 0.00 0.00 0.00 4.63
2486 2720 4.864334 CTCCGCCACCAGCCCATC 62.864 72.222 0.00 0.00 38.78 3.51
2489 2723 4.864334 CGCCACCAGCCCATCCTC 62.864 72.222 0.00 0.00 38.78 3.71
2490 2724 4.512914 GCCACCAGCCCATCCTCC 62.513 72.222 0.00 0.00 34.35 4.30
2491 2725 2.693864 CCACCAGCCCATCCTCCT 60.694 66.667 0.00 0.00 0.00 3.69
2492 2726 2.750657 CCACCAGCCCATCCTCCTC 61.751 68.421 0.00 0.00 0.00 3.71
2493 2727 2.367512 ACCAGCCCATCCTCCTCC 60.368 66.667 0.00 0.00 0.00 4.30
2494 2728 3.554342 CCAGCCCATCCTCCTCCG 61.554 72.222 0.00 0.00 0.00 4.63
2495 2729 4.247380 CAGCCCATCCTCCTCCGC 62.247 72.222 0.00 0.00 0.00 5.54
2498 2732 3.237741 CCCATCCTCCTCCGCCTC 61.238 72.222 0.00 0.00 0.00 4.70
2499 2733 3.237741 CCATCCTCCTCCGCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
2500 2734 2.123077 CATCCTCCTCCGCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
2501 2735 2.200092 ATCCTCCTCCGCCTCCTC 59.800 66.667 0.00 0.00 0.00 3.71
2502 2736 3.460478 ATCCTCCTCCGCCTCCTCC 62.460 68.421 0.00 0.00 0.00 4.30
2529 2763 4.802051 GCCCGCCCATTCTCAGCA 62.802 66.667 0.00 0.00 0.00 4.41
2530 2764 2.194056 CCCGCCCATTCTCAGCAT 59.806 61.111 0.00 0.00 0.00 3.79
2531 2765 1.895707 CCCGCCCATTCTCAGCATC 60.896 63.158 0.00 0.00 0.00 3.91
2532 2766 1.895707 CCGCCCATTCTCAGCATCC 60.896 63.158 0.00 0.00 0.00 3.51
2533 2767 2.249535 CGCCCATTCTCAGCATCCG 61.250 63.158 0.00 0.00 0.00 4.18
2534 2768 1.153086 GCCCATTCTCAGCATCCGT 60.153 57.895 0.00 0.00 0.00 4.69
2535 2769 1.442526 GCCCATTCTCAGCATCCGTG 61.443 60.000 0.00 0.00 0.00 4.94
2536 2770 0.816825 CCCATTCTCAGCATCCGTGG 60.817 60.000 0.00 0.00 0.00 4.94
2537 2771 1.442526 CCATTCTCAGCATCCGTGGC 61.443 60.000 0.00 0.00 0.00 5.01
2538 2772 1.153086 ATTCTCAGCATCCGTGGCC 60.153 57.895 0.00 0.00 0.00 5.36
2539 2773 2.930385 ATTCTCAGCATCCGTGGCCG 62.930 60.000 0.00 0.00 0.00 6.13
2564 2798 4.832608 CCCGCCGCCAACTACTCC 62.833 72.222 0.00 0.00 0.00 3.85
2565 2799 3.771160 CCGCCGCCAACTACTCCT 61.771 66.667 0.00 0.00 0.00 3.69
2566 2800 2.202756 CGCCGCCAACTACTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
2567 2801 2.187163 GCCGCCAACTACTCCTCC 59.813 66.667 0.00 0.00 0.00 4.30
2568 2802 2.359967 GCCGCCAACTACTCCTCCT 61.360 63.158 0.00 0.00 0.00 3.69
2569 2803 1.817209 CCGCCAACTACTCCTCCTC 59.183 63.158 0.00 0.00 0.00 3.71
2570 2804 1.677637 CCGCCAACTACTCCTCCTCC 61.678 65.000 0.00 0.00 0.00 4.30
2571 2805 1.677637 CGCCAACTACTCCTCCTCCC 61.678 65.000 0.00 0.00 0.00 4.30
2572 2806 1.338890 GCCAACTACTCCTCCTCCCC 61.339 65.000 0.00 0.00 0.00 4.81
2573 2807 0.042731 CCAACTACTCCTCCTCCCCA 59.957 60.000 0.00 0.00 0.00 4.96
2574 2808 1.344496 CCAACTACTCCTCCTCCCCAT 60.344 57.143 0.00 0.00 0.00 4.00
2575 2809 2.090719 CCAACTACTCCTCCTCCCCATA 60.091 54.545 0.00 0.00 0.00 2.74
2576 2810 2.966516 CAACTACTCCTCCTCCCCATAC 59.033 54.545 0.00 0.00 0.00 2.39
2577 2811 2.515791 ACTACTCCTCCTCCCCATACT 58.484 52.381 0.00 0.00 0.00 2.12
2578 2812 2.178106 ACTACTCCTCCTCCCCATACTG 59.822 54.545 0.00 0.00 0.00 2.74
2579 2813 0.399233 ACTCCTCCTCCCCATACTGC 60.399 60.000 0.00 0.00 0.00 4.40
2580 2814 1.074471 TCCTCCTCCCCATACTGCC 60.074 63.158 0.00 0.00 0.00 4.85
2581 2815 2.150051 CCTCCTCCCCATACTGCCC 61.150 68.421 0.00 0.00 0.00 5.36
2582 2816 1.074167 CTCCTCCCCATACTGCCCT 60.074 63.158 0.00 0.00 0.00 5.19
2583 2817 1.384502 TCCTCCCCATACTGCCCTG 60.385 63.158 0.00 0.00 0.00 4.45
2584 2818 2.455565 CCTCCCCATACTGCCCTGG 61.456 68.421 0.00 0.00 0.00 4.45
2585 2819 3.096495 TCCCCATACTGCCCTGGC 61.096 66.667 0.00 0.00 42.35 4.85
2586 2820 4.209866 CCCCATACTGCCCTGGCC 62.210 72.222 5.57 0.00 41.09 5.36
2587 2821 3.419580 CCCATACTGCCCTGGCCA 61.420 66.667 4.71 4.71 41.09 5.36
2588 2822 2.771321 CCCATACTGCCCTGGCCAT 61.771 63.158 5.51 0.00 41.09 4.40
2589 2823 1.228367 CCATACTGCCCTGGCCATC 60.228 63.158 5.51 0.00 41.09 3.51
2590 2824 1.228367 CATACTGCCCTGGCCATCC 60.228 63.158 5.51 0.00 41.09 3.51
2591 2825 2.464403 ATACTGCCCTGGCCATCCC 61.464 63.158 5.51 0.00 41.09 3.85
2592 2826 3.960578 TACTGCCCTGGCCATCCCA 62.961 63.158 5.51 2.15 42.79 4.37
2593 2827 4.064768 CTGCCCTGGCCATCCCAA 62.065 66.667 5.51 0.00 44.81 4.12
2594 2828 4.380945 TGCCCTGGCCATCCCAAC 62.381 66.667 5.51 0.00 44.81 3.77
2596 2830 4.820744 CCCTGGCCATCCCAACCG 62.821 72.222 5.51 0.00 44.81 4.44
2597 2831 4.047125 CCTGGCCATCCCAACCGT 62.047 66.667 5.51 0.00 44.81 4.83
2598 2832 2.438434 CTGGCCATCCCAACCGTC 60.438 66.667 5.51 0.00 44.81 4.79
2599 2833 4.402528 TGGCCATCCCAACCGTCG 62.403 66.667 0.00 0.00 41.82 5.12
2600 2834 4.404098 GGCCATCCCAACCGTCGT 62.404 66.667 0.00 0.00 0.00 4.34
2601 2835 2.818274 GCCATCCCAACCGTCGTC 60.818 66.667 0.00 0.00 0.00 4.20
2602 2836 2.660206 CCATCCCAACCGTCGTCA 59.340 61.111 0.00 0.00 0.00 4.35
2603 2837 1.220749 CCATCCCAACCGTCGTCAT 59.779 57.895 0.00 0.00 0.00 3.06
2604 2838 0.810031 CCATCCCAACCGTCGTCATC 60.810 60.000 0.00 0.00 0.00 2.92
2605 2839 0.810031 CATCCCAACCGTCGTCATCC 60.810 60.000 0.00 0.00 0.00 3.51
2606 2840 1.261938 ATCCCAACCGTCGTCATCCA 61.262 55.000 0.00 0.00 0.00 3.41
2607 2841 1.740296 CCCAACCGTCGTCATCCAC 60.740 63.158 0.00 0.00 0.00 4.02
2608 2842 1.740296 CCAACCGTCGTCATCCACC 60.740 63.158 0.00 0.00 0.00 4.61
2609 2843 1.740296 CAACCGTCGTCATCCACCC 60.740 63.158 0.00 0.00 0.00 4.61
2610 2844 2.211410 AACCGTCGTCATCCACCCA 61.211 57.895 0.00 0.00 0.00 4.51
2611 2845 2.125673 CCGTCGTCATCCACCCAC 60.126 66.667 0.00 0.00 0.00 4.61
2612 2846 2.646175 CCGTCGTCATCCACCCACT 61.646 63.158 0.00 0.00 0.00 4.00
2613 2847 1.153823 CGTCGTCATCCACCCACTC 60.154 63.158 0.00 0.00 0.00 3.51
2614 2848 1.218316 GTCGTCATCCACCCACTCC 59.782 63.158 0.00 0.00 0.00 3.85
2615 2849 1.078528 TCGTCATCCACCCACTCCT 59.921 57.895 0.00 0.00 0.00 3.69
2616 2850 1.219124 CGTCATCCACCCACTCCTG 59.781 63.158 0.00 0.00 0.00 3.86
2617 2851 1.257750 CGTCATCCACCCACTCCTGA 61.258 60.000 0.00 0.00 0.00 3.86
2618 2852 0.250513 GTCATCCACCCACTCCTGAC 59.749 60.000 0.00 0.00 0.00 3.51
2619 2853 0.909610 TCATCCACCCACTCCTGACC 60.910 60.000 0.00 0.00 0.00 4.02
2620 2854 1.616628 ATCCACCCACTCCTGACCC 60.617 63.158 0.00 0.00 0.00 4.46
2621 2855 2.415962 ATCCACCCACTCCTGACCCA 62.416 60.000 0.00 0.00 0.00 4.51
2622 2856 2.750350 CACCCACTCCTGACCCAC 59.250 66.667 0.00 0.00 0.00 4.61
2623 2857 2.529389 ACCCACTCCTGACCCACC 60.529 66.667 0.00 0.00 0.00 4.61
2624 2858 3.330720 CCCACTCCTGACCCACCC 61.331 72.222 0.00 0.00 0.00 4.61
2625 2859 2.203998 CCACTCCTGACCCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
2626 2860 2.294078 CCACTCCTGACCCACCCTC 61.294 68.421 0.00 0.00 0.00 4.30
2627 2861 1.229336 CACTCCTGACCCACCCTCT 60.229 63.158 0.00 0.00 0.00 3.69
2628 2862 1.079438 ACTCCTGACCCACCCTCTC 59.921 63.158 0.00 0.00 0.00 3.20
2629 2863 2.037367 TCCTGACCCACCCTCTCG 59.963 66.667 0.00 0.00 0.00 4.04
2630 2864 3.077556 CCTGACCCACCCTCTCGG 61.078 72.222 0.00 0.00 37.81 4.63
2631 2865 3.775654 CTGACCCACCCTCTCGGC 61.776 72.222 0.00 0.00 33.26 5.54
2635 2869 4.787280 CCCACCCTCTCGGCCTCT 62.787 72.222 0.00 0.00 33.26 3.69
2636 2870 3.151022 CCACCCTCTCGGCCTCTC 61.151 72.222 0.00 0.00 33.26 3.20
2637 2871 3.151022 CACCCTCTCGGCCTCTCC 61.151 72.222 0.00 0.00 33.26 3.71
2638 2872 4.467107 ACCCTCTCGGCCTCTCCC 62.467 72.222 0.00 0.00 33.26 4.30
2641 2875 4.150454 CTCTCGGCCTCTCCCCCT 62.150 72.222 0.00 0.00 0.00 4.79
2642 2876 4.144727 TCTCGGCCTCTCCCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
2647 2881 4.890306 GCCTCTCCCCCTCCCCTC 62.890 77.778 0.00 0.00 0.00 4.30
2648 2882 4.548513 CCTCTCCCCCTCCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
2649 2883 3.430497 CTCTCCCCCTCCCCTCGA 61.430 72.222 0.00 0.00 0.00 4.04
2650 2884 2.704198 TCTCCCCCTCCCCTCGAT 60.704 66.667 0.00 0.00 0.00 3.59
2651 2885 2.203714 CTCCCCCTCCCCTCGATC 60.204 72.222 0.00 0.00 0.00 3.69
2652 2886 3.837213 CTCCCCCTCCCCTCGATCC 62.837 73.684 0.00 0.00 0.00 3.36
2653 2887 4.964241 CCCCCTCCCCTCGATCCC 62.964 77.778 0.00 0.00 0.00 3.85
2654 2888 4.964241 CCCCTCCCCTCGATCCCC 62.964 77.778 0.00 0.00 0.00 4.81
2655 2889 4.964241 CCCTCCCCTCGATCCCCC 62.964 77.778 0.00 0.00 0.00 5.40
2656 2890 4.172232 CCTCCCCTCGATCCCCCA 62.172 72.222 0.00 0.00 0.00 4.96
2657 2891 2.525381 CTCCCCTCGATCCCCCAG 60.525 72.222 0.00 0.00 0.00 4.45
2658 2892 3.033773 TCCCCTCGATCCCCCAGA 61.034 66.667 0.00 0.00 0.00 3.86
2659 2893 2.205462 CCCCTCGATCCCCCAGAT 59.795 66.667 0.00 0.00 38.17 2.90
2660 2894 1.915769 CCCCTCGATCCCCCAGATC 60.916 68.421 0.00 0.00 46.90 2.75
2666 2900 1.893786 GATCCCCCAGATCCGATCG 59.106 63.158 8.51 8.51 45.00 3.69
2667 2901 0.612174 GATCCCCCAGATCCGATCGA 60.612 60.000 18.66 2.91 45.00 3.59
2668 2902 0.613292 ATCCCCCAGATCCGATCGAG 60.613 60.000 18.66 6.99 0.00 4.04
2669 2903 2.279069 CCCCCAGATCCGATCGAGG 61.279 68.421 18.66 9.82 0.00 4.63
2670 2904 2.653702 CCCAGATCCGATCGAGGC 59.346 66.667 18.66 4.78 0.00 4.70
2671 2905 2.203082 CCCAGATCCGATCGAGGCA 61.203 63.158 18.66 0.00 0.00 4.75
2672 2906 1.539560 CCCAGATCCGATCGAGGCAT 61.540 60.000 18.66 2.47 0.00 4.40
2673 2907 0.389556 CCAGATCCGATCGAGGCATG 60.390 60.000 18.66 8.37 0.00 4.06
2674 2908 1.013005 CAGATCCGATCGAGGCATGC 61.013 60.000 18.66 9.90 0.00 4.06
2675 2909 1.739562 GATCCGATCGAGGCATGCC 60.740 63.158 30.12 30.12 0.00 4.40
2676 2910 3.245668 ATCCGATCGAGGCATGCCC 62.246 63.158 33.14 22.29 36.58 5.36
2677 2911 4.996434 CCGATCGAGGCATGCCCC 62.996 72.222 33.14 21.85 36.58 5.80
2678 2912 4.240103 CGATCGAGGCATGCCCCA 62.240 66.667 33.14 17.49 36.58 4.96
2679 2913 2.592861 GATCGAGGCATGCCCCAC 60.593 66.667 33.14 22.17 36.58 4.61
2680 2914 4.195334 ATCGAGGCATGCCCCACC 62.195 66.667 33.14 18.05 36.58 4.61
2713 2947 4.552365 CCGCCGCTGATCCACCAT 62.552 66.667 0.00 0.00 0.00 3.55
2714 2948 2.969238 CGCCGCTGATCCACCATC 60.969 66.667 0.00 0.00 0.00 3.51
2715 2949 2.190313 GCCGCTGATCCACCATCA 59.810 61.111 0.00 0.00 39.39 3.07
2716 2950 2.182842 GCCGCTGATCCACCATCAC 61.183 63.158 0.00 0.00 36.51 3.06
2717 2951 1.884464 CCGCTGATCCACCATCACG 60.884 63.158 0.00 0.00 36.51 4.35
2718 2952 2.528743 CGCTGATCCACCATCACGC 61.529 63.158 0.00 0.00 36.51 5.34
2719 2953 1.153289 GCTGATCCACCATCACGCT 60.153 57.895 0.00 0.00 36.51 5.07
2720 2954 1.156645 GCTGATCCACCATCACGCTC 61.157 60.000 0.00 0.00 36.51 5.03
2721 2955 0.873312 CTGATCCACCATCACGCTCG 60.873 60.000 0.00 0.00 36.51 5.03
2722 2956 1.592669 GATCCACCATCACGCTCGG 60.593 63.158 0.00 0.00 0.00 4.63
2723 2957 2.298158 GATCCACCATCACGCTCGGT 62.298 60.000 0.00 0.00 0.00 4.69
2724 2958 1.040893 ATCCACCATCACGCTCGGTA 61.041 55.000 0.00 0.00 0.00 4.02
2725 2959 1.226974 CCACCATCACGCTCGGTAG 60.227 63.158 0.00 0.00 0.00 3.18
2726 2960 1.878522 CACCATCACGCTCGGTAGC 60.879 63.158 0.00 0.00 45.86 3.58
2744 2978 3.855853 GCCGCCCTCCTCCTTCTC 61.856 72.222 0.00 0.00 0.00 2.87
2745 2979 2.042435 CCGCCCTCCTCCTTCTCT 60.042 66.667 0.00 0.00 0.00 3.10
2746 2980 2.131067 CCGCCCTCCTCCTTCTCTC 61.131 68.421 0.00 0.00 0.00 3.20
2747 2981 1.076339 CGCCCTCCTCCTTCTCTCT 60.076 63.158 0.00 0.00 0.00 3.10
2748 2982 1.391157 CGCCCTCCTCCTTCTCTCTG 61.391 65.000 0.00 0.00 0.00 3.35
2749 2983 1.685355 GCCCTCCTCCTTCTCTCTGC 61.685 65.000 0.00 0.00 0.00 4.26
2750 2984 0.325110 CCCTCCTCCTTCTCTCTGCA 60.325 60.000 0.00 0.00 0.00 4.41
2751 2985 1.113788 CCTCCTCCTTCTCTCTGCAG 58.886 60.000 7.63 7.63 0.00 4.41
2752 2986 1.619432 CCTCCTCCTTCTCTCTGCAGT 60.619 57.143 14.67 0.00 0.00 4.40
2753 2987 1.750778 CTCCTCCTTCTCTCTGCAGTC 59.249 57.143 14.67 0.00 0.00 3.51
2754 2988 0.823460 CCTCCTTCTCTCTGCAGTCC 59.177 60.000 14.67 0.00 0.00 3.85
2755 2989 1.554836 CTCCTTCTCTCTGCAGTCCA 58.445 55.000 14.67 0.00 0.00 4.02
2756 2990 2.109774 CTCCTTCTCTCTGCAGTCCAT 58.890 52.381 14.67 0.00 0.00 3.41
2757 2991 1.829849 TCCTTCTCTCTGCAGTCCATG 59.170 52.381 14.67 1.38 0.00 3.66
2758 2992 1.134461 CCTTCTCTCTGCAGTCCATGG 60.134 57.143 14.67 4.97 0.00 3.66
2759 2993 0.251354 TTCTCTCTGCAGTCCATGGC 59.749 55.000 14.67 2.00 0.00 4.40
2760 2994 1.153208 CTCTCTGCAGTCCATGGCC 60.153 63.158 14.67 0.00 0.00 5.36
2761 2995 2.513204 CTCTGCAGTCCATGGCCG 60.513 66.667 14.67 0.00 0.00 6.13
2762 2996 4.100084 TCTGCAGTCCATGGCCGG 62.100 66.667 14.67 0.00 0.00 6.13
2784 3018 4.767255 GCAGCCTCGTCCCCACAG 62.767 72.222 0.00 0.00 0.00 3.66
2785 3019 4.767255 CAGCCTCGTCCCCACAGC 62.767 72.222 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
193 219 4.474651 AGACACATGGGGAATCACAGATAA 59.525 41.667 0.00 0.00 0.00 1.75
196 222 2.269023 AGACACATGGGGAATCACAGA 58.731 47.619 0.00 0.00 0.00 3.41
1627 1857 7.752239 CAGAATGTTTCATGTAGGATTGTTGTC 59.248 37.037 0.00 0.00 0.00 3.18
1860 2090 4.038162 GCTATCGTCCTCATCAAAGTAGGT 59.962 45.833 0.00 0.00 0.00 3.08
2200 2434 9.198475 CCCTCTCTTTCTTTTATAGTGGTAGTA 57.802 37.037 0.00 0.00 0.00 1.82
2201 2435 7.125963 CCCCTCTCTTTCTTTTATAGTGGTAGT 59.874 40.741 0.00 0.00 0.00 2.73
2202 2436 7.501844 CCCCTCTCTTTCTTTTATAGTGGTAG 58.498 42.308 0.00 0.00 0.00 3.18
2203 2437 6.126854 GCCCCTCTCTTTCTTTTATAGTGGTA 60.127 42.308 0.00 0.00 0.00 3.25
2204 2438 5.339282 GCCCCTCTCTTTCTTTTATAGTGGT 60.339 44.000 0.00 0.00 0.00 4.16
2205 2439 5.126779 GCCCCTCTCTTTCTTTTATAGTGG 58.873 45.833 0.00 0.00 0.00 4.00
2206 2440 5.745227 TGCCCCTCTCTTTCTTTTATAGTG 58.255 41.667 0.00 0.00 0.00 2.74
2207 2441 5.726793 TCTGCCCCTCTCTTTCTTTTATAGT 59.273 40.000 0.00 0.00 0.00 2.12
2208 2442 6.240549 TCTGCCCCTCTCTTTCTTTTATAG 57.759 41.667 0.00 0.00 0.00 1.31
2209 2443 6.183361 GGATCTGCCCCTCTCTTTCTTTTATA 60.183 42.308 0.00 0.00 0.00 0.98
2210 2444 5.398467 GGATCTGCCCCTCTCTTTCTTTTAT 60.398 44.000 0.00 0.00 0.00 1.40
2211 2445 4.080299 GGATCTGCCCCTCTCTTTCTTTTA 60.080 45.833 0.00 0.00 0.00 1.52
2212 2446 3.308760 GGATCTGCCCCTCTCTTTCTTTT 60.309 47.826 0.00 0.00 0.00 2.27
2213 2447 2.240921 GGATCTGCCCCTCTCTTTCTTT 59.759 50.000 0.00 0.00 0.00 2.52
2214 2448 1.843206 GGATCTGCCCCTCTCTTTCTT 59.157 52.381 0.00 0.00 0.00 2.52
2215 2449 1.274069 TGGATCTGCCCCTCTCTTTCT 60.274 52.381 0.00 0.00 34.97 2.52
2216 2450 1.207791 TGGATCTGCCCCTCTCTTTC 58.792 55.000 0.00 0.00 34.97 2.62
2217 2451 1.673767 TTGGATCTGCCCCTCTCTTT 58.326 50.000 0.00 0.00 34.97 2.52
2218 2452 1.283321 GTTTGGATCTGCCCCTCTCTT 59.717 52.381 0.00 0.00 34.97 2.85
2219 2453 0.915364 GTTTGGATCTGCCCCTCTCT 59.085 55.000 0.00 0.00 34.97 3.10
2220 2454 0.620556 TGTTTGGATCTGCCCCTCTC 59.379 55.000 0.00 0.00 34.97 3.20
2221 2455 1.075601 TTGTTTGGATCTGCCCCTCT 58.924 50.000 0.00 0.00 34.97 3.69
2222 2456 2.027385 GATTGTTTGGATCTGCCCCTC 58.973 52.381 0.00 0.00 34.97 4.30
2223 2457 1.358787 TGATTGTTTGGATCTGCCCCT 59.641 47.619 0.00 0.00 34.97 4.79
2224 2458 1.478105 GTGATTGTTTGGATCTGCCCC 59.522 52.381 0.00 0.00 34.97 5.80
2225 2459 2.094545 GTGTGATTGTTTGGATCTGCCC 60.095 50.000 0.00 0.00 34.97 5.36
2226 2460 2.094545 GGTGTGATTGTTTGGATCTGCC 60.095 50.000 0.00 0.00 37.10 4.85
2227 2461 2.094545 GGGTGTGATTGTTTGGATCTGC 60.095 50.000 0.00 0.00 0.00 4.26
2228 2462 3.156293 TGGGTGTGATTGTTTGGATCTG 58.844 45.455 0.00 0.00 0.00 2.90
2229 2463 3.524095 TGGGTGTGATTGTTTGGATCT 57.476 42.857 0.00 0.00 0.00 2.75
2230 2464 3.131046 GGATGGGTGTGATTGTTTGGATC 59.869 47.826 0.00 0.00 0.00 3.36
2231 2465 3.099141 GGATGGGTGTGATTGTTTGGAT 58.901 45.455 0.00 0.00 0.00 3.41
2232 2466 2.158400 TGGATGGGTGTGATTGTTTGGA 60.158 45.455 0.00 0.00 0.00 3.53
2233 2467 2.246469 TGGATGGGTGTGATTGTTTGG 58.754 47.619 0.00 0.00 0.00 3.28
2234 2468 3.510753 TGATGGATGGGTGTGATTGTTTG 59.489 43.478 0.00 0.00 0.00 2.93
2235 2469 3.777087 TGATGGATGGGTGTGATTGTTT 58.223 40.909 0.00 0.00 0.00 2.83
2236 2470 3.454719 TGATGGATGGGTGTGATTGTT 57.545 42.857 0.00 0.00 0.00 2.83
2237 2471 3.053470 TGATGATGGATGGGTGTGATTGT 60.053 43.478 0.00 0.00 0.00 2.71
2238 2472 3.558033 TGATGATGGATGGGTGTGATTG 58.442 45.455 0.00 0.00 0.00 2.67
2239 2473 3.957508 TGATGATGGATGGGTGTGATT 57.042 42.857 0.00 0.00 0.00 2.57
2240 2474 3.460712 TCTTGATGATGGATGGGTGTGAT 59.539 43.478 0.00 0.00 0.00 3.06
2241 2475 2.845586 TCTTGATGATGGATGGGTGTGA 59.154 45.455 0.00 0.00 0.00 3.58
2242 2476 3.286329 TCTTGATGATGGATGGGTGTG 57.714 47.619 0.00 0.00 0.00 3.82
2243 2477 3.720526 AGATCTTGATGATGGATGGGTGT 59.279 43.478 0.00 0.00 35.14 4.16
2244 2478 4.368565 AGATCTTGATGATGGATGGGTG 57.631 45.455 0.00 0.00 35.14 4.61
2245 2479 6.482524 CATTAGATCTTGATGATGGATGGGT 58.517 40.000 0.00 0.00 35.14 4.51
2246 2480 5.886474 CCATTAGATCTTGATGATGGATGGG 59.114 44.000 16.28 0.00 36.92 4.00
2247 2481 6.482524 ACCATTAGATCTTGATGATGGATGG 58.517 40.000 19.72 13.32 39.20 3.51
2248 2482 6.598457 GGACCATTAGATCTTGATGATGGATG 59.402 42.308 19.72 7.99 37.91 3.51
2249 2483 6.273965 TGGACCATTAGATCTTGATGATGGAT 59.726 38.462 19.72 10.10 37.91 3.41
2250 2484 5.608015 TGGACCATTAGATCTTGATGATGGA 59.392 40.000 19.72 4.43 37.91 3.41
2251 2485 5.872963 TGGACCATTAGATCTTGATGATGG 58.127 41.667 16.28 15.49 39.84 3.51
2252 2486 6.374613 CCATGGACCATTAGATCTTGATGATG 59.625 42.308 5.56 12.30 35.14 3.07
2253 2487 6.045224 ACCATGGACCATTAGATCTTGATGAT 59.955 38.462 21.47 3.49 38.27 2.45
2254 2488 5.370584 ACCATGGACCATTAGATCTTGATGA 59.629 40.000 21.47 2.04 0.00 2.92
2255 2489 5.472478 CACCATGGACCATTAGATCTTGATG 59.528 44.000 21.47 6.18 0.00 3.07
2256 2490 5.133322 ACACCATGGACCATTAGATCTTGAT 59.867 40.000 21.47 0.00 0.00 2.57
2257 2491 4.474651 ACACCATGGACCATTAGATCTTGA 59.525 41.667 21.47 0.00 0.00 3.02
2258 2492 4.785301 ACACCATGGACCATTAGATCTTG 58.215 43.478 21.47 3.47 0.00 3.02
2259 2493 4.723789 AGACACCATGGACCATTAGATCTT 59.276 41.667 21.47 0.00 0.00 2.40
2260 2494 4.302067 AGACACCATGGACCATTAGATCT 58.698 43.478 21.47 0.00 0.00 2.75
2261 2495 4.346418 AGAGACACCATGGACCATTAGATC 59.654 45.833 21.47 0.95 0.00 2.75
2262 2496 4.302067 AGAGACACCATGGACCATTAGAT 58.698 43.478 21.47 0.00 0.00 1.98
2263 2497 3.724478 AGAGACACCATGGACCATTAGA 58.276 45.455 21.47 0.00 0.00 2.10
2264 2498 5.070981 ACATAGAGACACCATGGACCATTAG 59.929 44.000 21.47 1.70 0.00 1.73
2265 2499 4.968719 ACATAGAGACACCATGGACCATTA 59.031 41.667 21.47 4.00 0.00 1.90
2266 2500 3.782523 ACATAGAGACACCATGGACCATT 59.217 43.478 21.47 0.00 0.00 3.16
2267 2501 3.387962 ACATAGAGACACCATGGACCAT 58.612 45.455 21.47 0.00 0.00 3.55
2268 2502 2.832838 ACATAGAGACACCATGGACCA 58.167 47.619 21.47 0.00 0.00 4.02
2269 2503 3.914426 AACATAGAGACACCATGGACC 57.086 47.619 21.47 6.71 0.00 4.46
2270 2504 6.092259 GTGTTAAACATAGAGACACCATGGAC 59.908 42.308 21.47 9.43 35.71 4.02
2271 2505 6.013725 AGTGTTAAACATAGAGACACCATGGA 60.014 38.462 21.47 0.00 41.01 3.41
2272 2506 6.173339 AGTGTTAAACATAGAGACACCATGG 58.827 40.000 11.19 11.19 41.01 3.66
2273 2507 7.010552 GCTAGTGTTAAACATAGAGACACCATG 59.989 40.741 0.00 0.00 41.01 3.66
2274 2508 7.042335 GCTAGTGTTAAACATAGAGACACCAT 58.958 38.462 0.00 0.00 41.01 3.55
2275 2509 6.014925 TGCTAGTGTTAAACATAGAGACACCA 60.015 38.462 0.00 0.00 41.01 4.17
2276 2510 6.395629 TGCTAGTGTTAAACATAGAGACACC 58.604 40.000 0.00 0.00 41.01 4.16
2277 2511 7.412020 GCTTGCTAGTGTTAAACATAGAGACAC 60.412 40.741 0.00 0.00 40.55 3.67
2278 2512 6.590292 GCTTGCTAGTGTTAAACATAGAGACA 59.410 38.462 0.00 0.00 0.00 3.41
2279 2513 6.036191 GGCTTGCTAGTGTTAAACATAGAGAC 59.964 42.308 0.00 0.00 0.00 3.36
2280 2514 6.106673 GGCTTGCTAGTGTTAAACATAGAGA 58.893 40.000 0.00 0.00 0.00 3.10
2281 2515 5.874810 TGGCTTGCTAGTGTTAAACATAGAG 59.125 40.000 0.00 0.00 0.00 2.43
2282 2516 5.642063 GTGGCTTGCTAGTGTTAAACATAGA 59.358 40.000 0.00 0.00 0.00 1.98
2283 2517 5.643777 AGTGGCTTGCTAGTGTTAAACATAG 59.356 40.000 0.00 0.00 0.00 2.23
2284 2518 5.556915 AGTGGCTTGCTAGTGTTAAACATA 58.443 37.500 0.00 0.00 0.00 2.29
2285 2519 4.398319 AGTGGCTTGCTAGTGTTAAACAT 58.602 39.130 0.00 0.00 0.00 2.71
2286 2520 3.815809 AGTGGCTTGCTAGTGTTAAACA 58.184 40.909 0.00 0.00 0.00 2.83
2287 2521 5.934935 TTAGTGGCTTGCTAGTGTTAAAC 57.065 39.130 0.00 0.00 0.00 2.01
2288 2522 6.472887 AGATTAGTGGCTTGCTAGTGTTAAA 58.527 36.000 0.00 0.00 0.00 1.52
2289 2523 6.049955 AGATTAGTGGCTTGCTAGTGTTAA 57.950 37.500 0.00 0.00 0.00 2.01
2290 2524 5.395324 GGAGATTAGTGGCTTGCTAGTGTTA 60.395 44.000 0.00 0.00 0.00 2.41
2291 2525 4.508662 GAGATTAGTGGCTTGCTAGTGTT 58.491 43.478 0.00 0.00 0.00 3.32
2292 2526 3.118592 GGAGATTAGTGGCTTGCTAGTGT 60.119 47.826 0.00 0.00 0.00 3.55
2293 2527 3.462021 GGAGATTAGTGGCTTGCTAGTG 58.538 50.000 0.00 0.00 0.00 2.74
2294 2528 2.436173 GGGAGATTAGTGGCTTGCTAGT 59.564 50.000 0.00 0.00 0.00 2.57
2295 2529 2.703007 AGGGAGATTAGTGGCTTGCTAG 59.297 50.000 0.00 0.00 0.00 3.42
2296 2530 2.764269 AGGGAGATTAGTGGCTTGCTA 58.236 47.619 0.00 0.00 0.00 3.49
2297 2531 1.589414 AGGGAGATTAGTGGCTTGCT 58.411 50.000 0.00 0.00 0.00 3.91
2298 2532 3.206964 GTTAGGGAGATTAGTGGCTTGC 58.793 50.000 0.00 0.00 0.00 4.01
2299 2533 4.192317 GTGTTAGGGAGATTAGTGGCTTG 58.808 47.826 0.00 0.00 0.00 4.01
2300 2534 3.844211 TGTGTTAGGGAGATTAGTGGCTT 59.156 43.478 0.00 0.00 0.00 4.35
2301 2535 3.450904 TGTGTTAGGGAGATTAGTGGCT 58.549 45.455 0.00 0.00 0.00 4.75
2302 2536 3.906720 TGTGTTAGGGAGATTAGTGGC 57.093 47.619 0.00 0.00 0.00 5.01
2303 2537 5.160607 TGTTGTGTTAGGGAGATTAGTGG 57.839 43.478 0.00 0.00 0.00 4.00
2304 2538 5.122396 GCTTGTTGTGTTAGGGAGATTAGTG 59.878 44.000 0.00 0.00 0.00 2.74
2305 2539 5.246307 GCTTGTTGTGTTAGGGAGATTAGT 58.754 41.667 0.00 0.00 0.00 2.24
2306 2540 4.636206 GGCTTGTTGTGTTAGGGAGATTAG 59.364 45.833 0.00 0.00 0.00 1.73
2307 2541 4.042311 TGGCTTGTTGTGTTAGGGAGATTA 59.958 41.667 0.00 0.00 0.00 1.75
2308 2542 3.181434 TGGCTTGTTGTGTTAGGGAGATT 60.181 43.478 0.00 0.00 0.00 2.40
2309 2543 2.375174 TGGCTTGTTGTGTTAGGGAGAT 59.625 45.455 0.00 0.00 0.00 2.75
2310 2544 1.771854 TGGCTTGTTGTGTTAGGGAGA 59.228 47.619 0.00 0.00 0.00 3.71
2311 2545 1.880027 GTGGCTTGTTGTGTTAGGGAG 59.120 52.381 0.00 0.00 0.00 4.30
2312 2546 1.213182 TGTGGCTTGTTGTGTTAGGGA 59.787 47.619 0.00 0.00 0.00 4.20
2313 2547 1.336755 GTGTGGCTTGTTGTGTTAGGG 59.663 52.381 0.00 0.00 0.00 3.53
2314 2548 2.020720 TGTGTGGCTTGTTGTGTTAGG 58.979 47.619 0.00 0.00 0.00 2.69
2315 2549 3.773860 TTGTGTGGCTTGTTGTGTTAG 57.226 42.857 0.00 0.00 0.00 2.34
2316 2550 4.727507 AATTGTGTGGCTTGTTGTGTTA 57.272 36.364 0.00 0.00 0.00 2.41
2317 2551 3.608316 AATTGTGTGGCTTGTTGTGTT 57.392 38.095 0.00 0.00 0.00 3.32
2318 2552 4.681744 CTTAATTGTGTGGCTTGTTGTGT 58.318 39.130 0.00 0.00 0.00 3.72
2319 2553 3.490526 GCTTAATTGTGTGGCTTGTTGTG 59.509 43.478 0.00 0.00 0.00 3.33
2320 2554 3.492482 GGCTTAATTGTGTGGCTTGTTGT 60.492 43.478 0.00 0.00 0.00 3.32
2321 2555 3.059166 GGCTTAATTGTGTGGCTTGTTG 58.941 45.455 0.00 0.00 0.00 3.33
2322 2556 2.037121 GGGCTTAATTGTGTGGCTTGTT 59.963 45.455 0.00 0.00 0.00 2.83
2323 2557 1.618343 GGGCTTAATTGTGTGGCTTGT 59.382 47.619 0.00 0.00 0.00 3.16
2324 2558 1.066929 GGGGCTTAATTGTGTGGCTTG 60.067 52.381 0.00 0.00 0.00 4.01
2325 2559 1.266178 GGGGCTTAATTGTGTGGCTT 58.734 50.000 0.00 0.00 0.00 4.35
2326 2560 0.965363 CGGGGCTTAATTGTGTGGCT 60.965 55.000 0.00 0.00 0.00 4.75
2327 2561 1.510844 CGGGGCTTAATTGTGTGGC 59.489 57.895 0.00 0.00 0.00 5.01
2328 2562 1.247419 TGCGGGGCTTAATTGTGTGG 61.247 55.000 0.00 0.00 0.00 4.17
2329 2563 0.109319 GTGCGGGGCTTAATTGTGTG 60.109 55.000 0.00 0.00 0.00 3.82
2330 2564 0.538516 TGTGCGGGGCTTAATTGTGT 60.539 50.000 0.00 0.00 0.00 3.72
2331 2565 0.109319 GTGTGCGGGGCTTAATTGTG 60.109 55.000 0.00 0.00 0.00 3.33
2332 2566 1.248101 GGTGTGCGGGGCTTAATTGT 61.248 55.000 0.00 0.00 0.00 2.71
2333 2567 1.510844 GGTGTGCGGGGCTTAATTG 59.489 57.895 0.00 0.00 0.00 2.32
2334 2568 1.680989 GGGTGTGCGGGGCTTAATT 60.681 57.895 0.00 0.00 0.00 1.40
2335 2569 2.044352 GGGTGTGCGGGGCTTAAT 60.044 61.111 0.00 0.00 0.00 1.40
2336 2570 4.354162 GGGGTGTGCGGGGCTTAA 62.354 66.667 0.00 0.00 0.00 1.85
2345 2579 3.343421 GTGTCGAACGGGGTGTGC 61.343 66.667 0.00 0.00 0.00 4.57
2354 2588 4.679690 CGTGCGTGCGTGTCGAAC 62.680 66.667 0.00 0.00 33.96 3.95
2370 2604 3.622060 AAAGATCGTGGTGGGGGCG 62.622 63.158 0.00 0.00 0.00 6.13
2371 2605 1.749258 GAAAGATCGTGGTGGGGGC 60.749 63.158 0.00 0.00 0.00 5.80
2372 2606 1.077716 GGAAAGATCGTGGTGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
2373 2607 1.077716 GGGAAAGATCGTGGTGGGG 60.078 63.158 0.00 0.00 0.00 4.96
2374 2608 0.676782 GTGGGAAAGATCGTGGTGGG 60.677 60.000 0.00 0.00 0.00 4.61
2375 2609 1.019278 CGTGGGAAAGATCGTGGTGG 61.019 60.000 0.00 0.00 0.00 4.61
2376 2610 1.635663 GCGTGGGAAAGATCGTGGTG 61.636 60.000 0.00 0.00 0.00 4.17
2377 2611 1.375523 GCGTGGGAAAGATCGTGGT 60.376 57.895 0.00 0.00 0.00 4.16
2378 2612 2.106683 GGCGTGGGAAAGATCGTGG 61.107 63.158 0.00 0.00 0.00 4.94
2379 2613 2.106683 GGGCGTGGGAAAGATCGTG 61.107 63.158 0.00 0.00 0.00 4.35
2380 2614 2.267961 GGGCGTGGGAAAGATCGT 59.732 61.111 0.00 0.00 0.00 3.73
2381 2615 2.890474 CGGGCGTGGGAAAGATCG 60.890 66.667 0.00 0.00 0.00 3.69
2382 2616 3.202706 GCGGGCGTGGGAAAGATC 61.203 66.667 0.00 0.00 0.00 2.75
2383 2617 4.028490 TGCGGGCGTGGGAAAGAT 62.028 61.111 0.00 0.00 0.00 2.40
2397 2631 3.003173 TTGGGAGGAGGAGGTGCG 61.003 66.667 0.00 0.00 0.00 5.34
2398 2632 2.671682 GTTGGGAGGAGGAGGTGC 59.328 66.667 0.00 0.00 0.00 5.01
2399 2633 1.609501 TCGTTGGGAGGAGGAGGTG 60.610 63.158 0.00 0.00 0.00 4.00
2400 2634 1.609794 GTCGTTGGGAGGAGGAGGT 60.610 63.158 0.00 0.00 0.00 3.85
2401 2635 2.359967 GGTCGTTGGGAGGAGGAGG 61.360 68.421 0.00 0.00 0.00 4.30
2402 2636 1.608717 CTGGTCGTTGGGAGGAGGAG 61.609 65.000 0.00 0.00 0.00 3.69
2403 2637 1.609501 CTGGTCGTTGGGAGGAGGA 60.610 63.158 0.00 0.00 0.00 3.71
2404 2638 1.608717 CTCTGGTCGTTGGGAGGAGG 61.609 65.000 0.00 0.00 0.00 4.30
2405 2639 1.893786 CTCTGGTCGTTGGGAGGAG 59.106 63.158 0.00 0.00 0.00 3.69
2406 2640 2.283529 GCTCTGGTCGTTGGGAGGA 61.284 63.158 0.00 0.00 0.00 3.71
2407 2641 2.266055 GCTCTGGTCGTTGGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
2408 2642 1.374758 GTGCTCTGGTCGTTGGGAG 60.375 63.158 0.00 0.00 0.00 4.30
2409 2643 2.741092 GTGCTCTGGTCGTTGGGA 59.259 61.111 0.00 0.00 0.00 4.37
2410 2644 2.738521 CGTGCTCTGGTCGTTGGG 60.739 66.667 0.00 0.00 0.00 4.12
2411 2645 2.738521 CCGTGCTCTGGTCGTTGG 60.739 66.667 0.00 0.00 0.00 3.77
2412 2646 3.414700 GCCGTGCTCTGGTCGTTG 61.415 66.667 0.00 0.00 0.00 4.10
2413 2647 4.681978 GGCCGTGCTCTGGTCGTT 62.682 66.667 0.00 0.00 0.00 3.85
2450 2684 4.598894 CGGAGGATGGGCGAGCAG 62.599 72.222 0.00 0.00 0.00 4.24
2469 2703 4.864334 GATGGGCTGGTGGCGGAG 62.864 72.222 0.00 0.00 42.94 4.63
2472 2706 4.864334 GAGGATGGGCTGGTGGCG 62.864 72.222 0.00 0.00 42.94 5.69
2473 2707 4.512914 GGAGGATGGGCTGGTGGC 62.513 72.222 0.00 0.00 40.90 5.01
2474 2708 2.693864 AGGAGGATGGGCTGGTGG 60.694 66.667 0.00 0.00 0.00 4.61
2475 2709 2.750657 GGAGGAGGATGGGCTGGTG 61.751 68.421 0.00 0.00 0.00 4.17
2476 2710 2.367512 GGAGGAGGATGGGCTGGT 60.368 66.667 0.00 0.00 0.00 4.00
2477 2711 3.554342 CGGAGGAGGATGGGCTGG 61.554 72.222 0.00 0.00 0.00 4.85
2478 2712 4.247380 GCGGAGGAGGATGGGCTG 62.247 72.222 0.00 0.00 0.00 4.85
2481 2715 3.237741 GAGGCGGAGGAGGATGGG 61.238 72.222 0.00 0.00 0.00 4.00
2482 2716 3.237741 GGAGGCGGAGGAGGATGG 61.238 72.222 0.00 0.00 0.00 3.51
2483 2717 2.123077 AGGAGGCGGAGGAGGATG 60.123 66.667 0.00 0.00 0.00 3.51
2484 2718 2.200092 GAGGAGGCGGAGGAGGAT 59.800 66.667 0.00 0.00 0.00 3.24
2485 2719 4.144727 GGAGGAGGCGGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
2512 2746 4.802051 TGCTGAGAATGGGCGGGC 62.802 66.667 0.00 0.00 0.00 6.13
2513 2747 1.895707 GATGCTGAGAATGGGCGGG 60.896 63.158 0.00 0.00 0.00 6.13
2514 2748 1.895707 GGATGCTGAGAATGGGCGG 60.896 63.158 0.00 0.00 0.00 6.13
2515 2749 2.249535 CGGATGCTGAGAATGGGCG 61.250 63.158 0.00 0.00 0.00 6.13
2516 2750 1.153086 ACGGATGCTGAGAATGGGC 60.153 57.895 0.00 0.00 0.00 5.36
2517 2751 0.816825 CCACGGATGCTGAGAATGGG 60.817 60.000 0.00 0.00 0.00 4.00
2518 2752 1.442526 GCCACGGATGCTGAGAATGG 61.443 60.000 0.00 0.00 0.00 3.16
2519 2753 1.442526 GGCCACGGATGCTGAGAATG 61.443 60.000 0.00 0.00 0.00 2.67
2520 2754 1.153086 GGCCACGGATGCTGAGAAT 60.153 57.895 0.00 0.00 0.00 2.40
2521 2755 2.268920 GGCCACGGATGCTGAGAA 59.731 61.111 0.00 0.00 0.00 2.87
2522 2756 4.147449 CGGCCACGGATGCTGAGA 62.147 66.667 2.24 0.00 37.27 3.27
2547 2781 4.832608 GGAGTAGTTGGCGGCGGG 62.833 72.222 9.78 0.00 0.00 6.13
2548 2782 3.718210 GAGGAGTAGTTGGCGGCGG 62.718 68.421 9.78 0.00 0.00 6.13
2549 2783 2.202756 GAGGAGTAGTTGGCGGCG 60.203 66.667 0.51 0.51 0.00 6.46
2550 2784 2.187163 GGAGGAGTAGTTGGCGGC 59.813 66.667 0.00 0.00 0.00 6.53
2551 2785 1.677637 GGAGGAGGAGTAGTTGGCGG 61.678 65.000 0.00 0.00 0.00 6.13
2552 2786 1.677637 GGGAGGAGGAGTAGTTGGCG 61.678 65.000 0.00 0.00 0.00 5.69
2553 2787 1.338890 GGGGAGGAGGAGTAGTTGGC 61.339 65.000 0.00 0.00 0.00 4.52
2554 2788 0.042731 TGGGGAGGAGGAGTAGTTGG 59.957 60.000 0.00 0.00 0.00 3.77
2555 2789 2.182516 ATGGGGAGGAGGAGTAGTTG 57.817 55.000 0.00 0.00 0.00 3.16
2556 2790 2.866454 AGTATGGGGAGGAGGAGTAGTT 59.134 50.000 0.00 0.00 0.00 2.24
2557 2791 2.178106 CAGTATGGGGAGGAGGAGTAGT 59.822 54.545 0.00 0.00 0.00 2.73
2558 2792 2.883026 CAGTATGGGGAGGAGGAGTAG 58.117 57.143 0.00 0.00 0.00 2.57
2559 2793 1.133136 GCAGTATGGGGAGGAGGAGTA 60.133 57.143 0.00 0.00 35.86 2.59
2560 2794 0.399233 GCAGTATGGGGAGGAGGAGT 60.399 60.000 0.00 0.00 35.86 3.85
2561 2795 1.124477 GGCAGTATGGGGAGGAGGAG 61.124 65.000 0.00 0.00 35.86 3.69
2562 2796 1.074471 GGCAGTATGGGGAGGAGGA 60.074 63.158 0.00 0.00 35.86 3.71
2563 2797 2.150051 GGGCAGTATGGGGAGGAGG 61.150 68.421 0.00 0.00 35.86 4.30
2564 2798 1.074167 AGGGCAGTATGGGGAGGAG 60.074 63.158 0.00 0.00 35.86 3.69
2565 2799 1.384502 CAGGGCAGTATGGGGAGGA 60.385 63.158 0.00 0.00 35.86 3.71
2566 2800 2.455565 CCAGGGCAGTATGGGGAGG 61.456 68.421 0.00 0.00 35.86 4.30
2567 2801 3.125376 GCCAGGGCAGTATGGGGAG 62.125 68.421 5.20 0.00 41.49 4.30
2568 2802 3.096495 GCCAGGGCAGTATGGGGA 61.096 66.667 5.20 0.00 41.49 4.81
2569 2803 4.209866 GGCCAGGGCAGTATGGGG 62.210 72.222 13.10 0.00 44.11 4.96
2570 2804 2.703675 GATGGCCAGGGCAGTATGGG 62.704 65.000 22.19 0.00 42.43 4.00
2571 2805 1.228367 GATGGCCAGGGCAGTATGG 60.228 63.158 22.19 0.00 42.43 2.74
2572 2806 1.228367 GGATGGCCAGGGCAGTATG 60.228 63.158 22.19 0.00 42.43 2.39
2573 2807 2.464403 GGGATGGCCAGGGCAGTAT 61.464 63.158 22.19 4.31 42.43 2.12
2574 2808 3.096495 GGGATGGCCAGGGCAGTA 61.096 66.667 22.19 0.00 42.43 2.74
2576 2810 4.064768 TTGGGATGGCCAGGGCAG 62.065 66.667 22.19 0.00 42.43 4.85
2577 2811 4.380945 GTTGGGATGGCCAGGGCA 62.381 66.667 19.93 19.93 44.11 5.36
2579 2813 4.820744 CGGTTGGGATGGCCAGGG 62.821 72.222 13.05 0.00 35.15 4.45
2580 2814 3.995506 GACGGTTGGGATGGCCAGG 62.996 68.421 13.05 0.00 35.15 4.45
2581 2815 2.438434 GACGGTTGGGATGGCCAG 60.438 66.667 13.05 0.00 35.15 4.85
2582 2816 4.402528 CGACGGTTGGGATGGCCA 62.403 66.667 8.56 8.56 35.15 5.36
2583 2817 4.404098 ACGACGGTTGGGATGGCC 62.404 66.667 0.00 0.00 0.00 5.36
2584 2818 2.818274 GACGACGGTTGGGATGGC 60.818 66.667 0.00 0.00 0.00 4.40
2585 2819 0.810031 GATGACGACGGTTGGGATGG 60.810 60.000 0.00 0.00 0.00 3.51
2586 2820 0.810031 GGATGACGACGGTTGGGATG 60.810 60.000 0.00 0.00 0.00 3.51
2587 2821 1.261938 TGGATGACGACGGTTGGGAT 61.262 55.000 0.00 0.00 0.00 3.85
2588 2822 1.909287 TGGATGACGACGGTTGGGA 60.909 57.895 0.00 0.00 0.00 4.37
2589 2823 1.740296 GTGGATGACGACGGTTGGG 60.740 63.158 0.00 0.00 0.00 4.12
2590 2824 1.740296 GGTGGATGACGACGGTTGG 60.740 63.158 0.00 0.00 0.00 3.77
2591 2825 1.740296 GGGTGGATGACGACGGTTG 60.740 63.158 0.00 0.00 0.00 3.77
2592 2826 2.211410 TGGGTGGATGACGACGGTT 61.211 57.895 0.00 0.00 0.00 4.44
2593 2827 2.602267 TGGGTGGATGACGACGGT 60.602 61.111 0.00 0.00 0.00 4.83
2594 2828 2.125673 GTGGGTGGATGACGACGG 60.126 66.667 0.00 0.00 0.00 4.79
2595 2829 1.153823 GAGTGGGTGGATGACGACG 60.154 63.158 0.00 0.00 0.00 5.12
2596 2830 1.218316 GGAGTGGGTGGATGACGAC 59.782 63.158 0.00 0.00 0.00 4.34
2597 2831 1.078528 AGGAGTGGGTGGATGACGA 59.921 57.895 0.00 0.00 0.00 4.20
2598 2832 1.219124 CAGGAGTGGGTGGATGACG 59.781 63.158 0.00 0.00 0.00 4.35
2599 2833 0.250513 GTCAGGAGTGGGTGGATGAC 59.749 60.000 0.00 0.00 0.00 3.06
2600 2834 0.909610 GGTCAGGAGTGGGTGGATGA 60.910 60.000 0.00 0.00 0.00 2.92
2601 2835 1.604378 GGTCAGGAGTGGGTGGATG 59.396 63.158 0.00 0.00 0.00 3.51
2602 2836 1.616628 GGGTCAGGAGTGGGTGGAT 60.617 63.158 0.00 0.00 0.00 3.41
2603 2837 2.203938 GGGTCAGGAGTGGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
2604 2838 2.529136 TGGGTCAGGAGTGGGTGG 60.529 66.667 0.00 0.00 0.00 4.61
2605 2839 2.750350 GTGGGTCAGGAGTGGGTG 59.250 66.667 0.00 0.00 0.00 4.61
2606 2840 2.529389 GGTGGGTCAGGAGTGGGT 60.529 66.667 0.00 0.00 0.00 4.51
2607 2841 3.330720 GGGTGGGTCAGGAGTGGG 61.331 72.222 0.00 0.00 0.00 4.61
2608 2842 2.203998 AGGGTGGGTCAGGAGTGG 60.204 66.667 0.00 0.00 0.00 4.00
2609 2843 1.229336 AGAGGGTGGGTCAGGAGTG 60.229 63.158 0.00 0.00 0.00 3.51
2610 2844 1.079438 GAGAGGGTGGGTCAGGAGT 59.921 63.158 0.00 0.00 0.00 3.85
2611 2845 2.055042 CGAGAGGGTGGGTCAGGAG 61.055 68.421 0.00 0.00 0.00 3.69
2612 2846 2.037367 CGAGAGGGTGGGTCAGGA 59.963 66.667 0.00 0.00 0.00 3.86
2624 2858 4.150454 AGGGGGAGAGGCCGAGAG 62.150 72.222 0.00 0.00 37.63 3.20
2625 2859 4.144727 GAGGGGGAGAGGCCGAGA 62.145 72.222 0.00 0.00 37.63 4.04
2630 2864 4.890306 GAGGGGAGGGGGAGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
2631 2865 4.548513 CGAGGGGAGGGGGAGAGG 62.549 77.778 0.00 0.00 0.00 3.69
2632 2866 2.723464 GATCGAGGGGAGGGGGAGAG 62.723 70.000 0.00 0.00 0.00 3.20
2633 2867 2.704198 ATCGAGGGGAGGGGGAGA 60.704 66.667 0.00 0.00 0.00 3.71
2634 2868 2.203714 GATCGAGGGGAGGGGGAG 60.204 72.222 0.00 0.00 0.00 4.30
2635 2869 3.846254 GGATCGAGGGGAGGGGGA 61.846 72.222 0.00 0.00 0.00 4.81
2636 2870 4.964241 GGGATCGAGGGGAGGGGG 62.964 77.778 0.00 0.00 0.00 5.40
2637 2871 4.964241 GGGGATCGAGGGGAGGGG 62.964 77.778 0.00 0.00 0.00 4.79
2638 2872 4.964241 GGGGGATCGAGGGGAGGG 62.964 77.778 0.00 0.00 0.00 4.30
2639 2873 4.172232 TGGGGGATCGAGGGGAGG 62.172 72.222 0.00 0.00 0.00 4.30
2640 2874 2.393710 ATCTGGGGGATCGAGGGGAG 62.394 65.000 0.00 0.00 0.00 4.30
2641 2875 2.387851 GATCTGGGGGATCGAGGGGA 62.388 65.000 0.00 0.00 40.99 4.81
2642 2876 1.915769 GATCTGGGGGATCGAGGGG 60.916 68.421 0.00 0.00 40.99 4.79
2643 2877 3.798758 GATCTGGGGGATCGAGGG 58.201 66.667 0.00 0.00 40.99 4.30
2649 2883 0.613292 CTCGATCGGATCTGGGGGAT 60.613 60.000 16.41 0.00 37.37 3.85
2650 2884 1.228583 CTCGATCGGATCTGGGGGA 60.229 63.158 16.41 4.70 0.00 4.81
2651 2885 2.279069 CCTCGATCGGATCTGGGGG 61.279 68.421 16.41 6.88 0.00 5.40
2652 2886 2.936912 GCCTCGATCGGATCTGGGG 61.937 68.421 16.41 18.46 0.00 4.96
2653 2887 1.539560 ATGCCTCGATCGGATCTGGG 61.540 60.000 16.41 18.65 0.00 4.45
2654 2888 0.389556 CATGCCTCGATCGGATCTGG 60.390 60.000 16.41 16.48 0.00 3.86
2655 2889 1.013005 GCATGCCTCGATCGGATCTG 61.013 60.000 16.41 8.09 0.00 2.90
2656 2890 1.291588 GCATGCCTCGATCGGATCT 59.708 57.895 16.41 0.00 0.00 2.75
2657 2891 1.739562 GGCATGCCTCGATCGGATC 60.740 63.158 29.98 7.95 0.00 3.36
2658 2892 2.345244 GGCATGCCTCGATCGGAT 59.655 61.111 29.98 0.00 0.00 4.18
2659 2893 3.928779 GGGCATGCCTCGATCGGA 61.929 66.667 34.70 1.00 36.10 4.55
2660 2894 4.996434 GGGGCATGCCTCGATCGG 62.996 72.222 34.70 5.93 36.10 4.18
2661 2895 4.240103 TGGGGCATGCCTCGATCG 62.240 66.667 34.70 9.36 40.15 3.69
2662 2896 2.592861 GTGGGGCATGCCTCGATC 60.593 66.667 34.70 21.48 40.15 3.69
2663 2897 4.195334 GGTGGGGCATGCCTCGAT 62.195 66.667 34.70 0.00 40.15 3.59
2696 2930 4.552365 ATGGTGGATCAGCGGCGG 62.552 66.667 9.78 0.00 34.27 6.13
2697 2931 2.969238 GATGGTGGATCAGCGGCG 60.969 66.667 0.51 0.51 34.27 6.46
2698 2932 2.182842 GTGATGGTGGATCAGCGGC 61.183 63.158 0.00 0.00 42.00 6.53
2699 2933 1.884464 CGTGATGGTGGATCAGCGG 60.884 63.158 0.00 0.00 42.00 5.52
2700 2934 2.528743 GCGTGATGGTGGATCAGCG 61.529 63.158 0.00 0.00 42.00 5.18
2701 2935 1.153289 AGCGTGATGGTGGATCAGC 60.153 57.895 0.00 0.00 42.00 4.26
2702 2936 0.873312 CGAGCGTGATGGTGGATCAG 60.873 60.000 0.00 0.00 42.00 2.90
2703 2937 1.141665 CGAGCGTGATGGTGGATCA 59.858 57.895 0.00 0.00 38.87 2.92
2704 2938 1.592669 CCGAGCGTGATGGTGGATC 60.593 63.158 0.00 0.00 0.00 3.36
2705 2939 1.040893 TACCGAGCGTGATGGTGGAT 61.041 55.000 0.00 0.00 37.20 3.41
2706 2940 1.663379 CTACCGAGCGTGATGGTGGA 61.663 60.000 0.00 0.00 36.44 4.02
2707 2941 1.226974 CTACCGAGCGTGATGGTGG 60.227 63.158 0.00 0.00 37.20 4.61
2708 2942 1.878522 GCTACCGAGCGTGATGGTG 60.879 63.158 0.00 0.00 39.39 4.17
2709 2943 2.494918 GCTACCGAGCGTGATGGT 59.505 61.111 0.00 0.00 39.39 3.55
2727 2961 3.855853 GAGAAGGAGGAGGGCGGC 61.856 72.222 0.00 0.00 0.00 6.53
2728 2962 2.042435 AGAGAAGGAGGAGGGCGG 60.042 66.667 0.00 0.00 0.00 6.13
2729 2963 1.076339 AGAGAGAAGGAGGAGGGCG 60.076 63.158 0.00 0.00 0.00 6.13
2730 2964 1.685355 GCAGAGAGAAGGAGGAGGGC 61.685 65.000 0.00 0.00 0.00 5.19
2731 2965 0.325110 TGCAGAGAGAAGGAGGAGGG 60.325 60.000 0.00 0.00 0.00 4.30
2732 2966 1.113788 CTGCAGAGAGAAGGAGGAGG 58.886 60.000 8.42 0.00 0.00 4.30
2733 2967 1.750778 GACTGCAGAGAGAAGGAGGAG 59.249 57.143 23.35 0.00 0.00 3.69
2734 2968 1.618345 GGACTGCAGAGAGAAGGAGGA 60.618 57.143 23.35 0.00 0.00 3.71
2735 2969 0.823460 GGACTGCAGAGAGAAGGAGG 59.177 60.000 23.35 0.00 0.00 4.30
2736 2970 1.554836 TGGACTGCAGAGAGAAGGAG 58.445 55.000 23.35 0.00 0.00 3.69
2737 2971 1.829849 CATGGACTGCAGAGAGAAGGA 59.170 52.381 23.35 0.00 0.00 3.36
2738 2972 1.134461 CCATGGACTGCAGAGAGAAGG 60.134 57.143 23.35 10.85 0.00 3.46
2739 2973 1.743091 GCCATGGACTGCAGAGAGAAG 60.743 57.143 23.35 5.94 0.00 2.85
2740 2974 0.251354 GCCATGGACTGCAGAGAGAA 59.749 55.000 23.35 1.00 0.00 2.87
2741 2975 1.620739 GGCCATGGACTGCAGAGAGA 61.621 60.000 23.35 0.96 0.00 3.10
2742 2976 1.153208 GGCCATGGACTGCAGAGAG 60.153 63.158 23.35 5.11 0.00 3.20
2743 2977 2.993008 GGCCATGGACTGCAGAGA 59.007 61.111 23.35 3.39 0.00 3.10
2744 2978 2.513204 CGGCCATGGACTGCAGAG 60.513 66.667 23.35 4.37 0.00 3.35
2745 2979 4.100084 CCGGCCATGGACTGCAGA 62.100 66.667 23.35 0.00 0.00 4.26
2767 3001 4.767255 CTGTGGGGACGAGGCTGC 62.767 72.222 0.00 0.00 0.00 5.25
2768 3002 4.767255 GCTGTGGGGACGAGGCTG 62.767 72.222 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.