Multiple sequence alignment - TraesCS6A01G283200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G283200 chr6A 100.000 1441 0 0 2517 3957 514338213 514339653 0.000000e+00 2662
1 TraesCS6A01G283200 chr6A 100.000 1310 0 0 1 1310 514335697 514337006 0.000000e+00 2420
2 TraesCS6A01G283200 chr6A 98.847 954 11 0 1 954 127618729 127617776 0.000000e+00 1701
3 TraesCS6A01G283200 chr7A 99.057 954 9 0 1 954 570177428 570176475 0.000000e+00 1712
4 TraesCS6A01G283200 chr4B 99.056 953 9 0 1 953 17244287 17243335 0.000000e+00 1711
5 TraesCS6A01G283200 chr4B 98.847 954 11 0 1 954 6672496 6673449 0.000000e+00 1701
6 TraesCS6A01G283200 chr3A 99.056 953 9 0 1 953 732939859 732940811 0.000000e+00 1711
7 TraesCS6A01G283200 chr3B 98.952 954 10 0 1 954 191219768 191220721 0.000000e+00 1707
8 TraesCS6A01G283200 chr3B 98.952 954 10 0 1 954 775426377 775425424 0.000000e+00 1707
9 TraesCS6A01G283200 chr3B 98.951 953 10 0 1 953 771349540 771350492 0.000000e+00 1705
10 TraesCS6A01G283200 chr7B 98.951 953 10 0 1 953 563670850 563671802 0.000000e+00 1705
11 TraesCS6A01G283200 chr6D 89.929 983 48 20 2517 3466 372429452 372430416 0.000000e+00 1219
12 TraesCS6A01G283200 chr6D 87.071 379 21 18 954 1308 372428102 372428476 1.710000e-108 403
13 TraesCS6A01G283200 chr6D 95.000 120 6 0 3463 3582 372430626 372430745 5.220000e-44 189
14 TraesCS6A01G283200 chr6B 95.211 355 16 1 954 1308 559537144 559536791 9.600000e-156 560
15 TraesCS6A01G283200 chr6B 90.709 409 36 2 2970 3377 559529207 559528800 9.670000e-151 544
16 TraesCS6A01G283200 chr6B 94.801 327 17 0 2517 2843 559535837 559535511 9.810000e-141 510
17 TraesCS6A01G283200 chr6B 88.426 216 22 3 3564 3777 559524822 559524608 1.410000e-64 257
18 TraesCS6A01G283200 chr6B 92.308 143 11 0 3815 3957 559524596 559524454 1.860000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G283200 chr6A 514335697 514339653 3956 False 2541.000000 2662 100.000000 1 3957 2 chr6A.!!$F1 3956
1 TraesCS6A01G283200 chr6A 127617776 127618729 953 True 1701.000000 1701 98.847000 1 954 1 chr6A.!!$R1 953
2 TraesCS6A01G283200 chr7A 570176475 570177428 953 True 1712.000000 1712 99.057000 1 954 1 chr7A.!!$R1 953
3 TraesCS6A01G283200 chr4B 17243335 17244287 952 True 1711.000000 1711 99.056000 1 953 1 chr4B.!!$R1 952
4 TraesCS6A01G283200 chr4B 6672496 6673449 953 False 1701.000000 1701 98.847000 1 954 1 chr4B.!!$F1 953
5 TraesCS6A01G283200 chr3A 732939859 732940811 952 False 1711.000000 1711 99.056000 1 953 1 chr3A.!!$F1 952
6 TraesCS6A01G283200 chr3B 191219768 191220721 953 False 1707.000000 1707 98.952000 1 954 1 chr3B.!!$F1 953
7 TraesCS6A01G283200 chr3B 775425424 775426377 953 True 1707.000000 1707 98.952000 1 954 1 chr3B.!!$R1 953
8 TraesCS6A01G283200 chr3B 771349540 771350492 952 False 1705.000000 1705 98.951000 1 953 1 chr3B.!!$F2 952
9 TraesCS6A01G283200 chr7B 563670850 563671802 952 False 1705.000000 1705 98.951000 1 953 1 chr7B.!!$F1 952
10 TraesCS6A01G283200 chr6D 372428102 372430745 2643 False 603.666667 1219 90.666667 954 3582 3 chr6D.!!$F1 2628
11 TraesCS6A01G283200 chr6B 559535511 559537144 1633 True 535.000000 560 95.006000 954 2843 2 chr6B.!!$R2 1889
12 TraesCS6A01G283200 chr6B 559524454 559529207 4753 True 335.000000 544 90.481000 2970 3957 3 chr6B.!!$R1 987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 1.625818 GCCACTTCAAGAGGAGGAGAA 59.374 52.381 4.83 0.0 0.00 2.87 F
1221 1228 1.370900 CGCTGCGCTTGCTTTTCTT 60.371 52.632 9.88 0.0 40.12 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1245 1279 1.141053 ACAACAACTCTCCCGAAAGCT 59.859 47.619 0.0 0.0 0.0 3.74 R
3220 3288 0.331278 CATCCCCCAACAGGCTAACA 59.669 55.000 0.0 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 1.625818 GCCACTTCAAGAGGAGGAGAA 59.374 52.381 4.83 0.00 0.00 2.87
523 524 6.207417 GGTTGAATCACTTCTTGAGGAATTGA 59.793 38.462 0.18 0.18 44.03 2.57
549 550 7.384660 AGAATCAAGAAGAATCGTATCTCATGC 59.615 37.037 0.00 0.00 31.22 4.06
1221 1228 1.370900 CGCTGCGCTTGCTTTTCTT 60.371 52.632 9.88 0.00 40.12 2.52
1228 1262 2.860136 GCGCTTGCTTTTCTTGACTTTT 59.140 40.909 0.00 0.00 35.07 2.27
1242 1276 4.955811 TGACTTTTGAGAGAGCTGGTTA 57.044 40.909 0.00 0.00 0.00 2.85
1245 1279 5.538813 TGACTTTTGAGAGAGCTGGTTAGTA 59.461 40.000 0.00 0.00 0.00 1.82
1293 1328 3.565516 GTTTGTTGGCTCGGATCTTTTC 58.434 45.455 0.00 0.00 0.00 2.29
1308 1343 2.084546 CTTTTCCGGTTCCAGTGATCC 58.915 52.381 0.00 0.00 0.00 3.36
2590 2625 1.078426 CAACGGGATCCTGGACACC 60.078 63.158 24.68 5.85 0.00 4.16
2857 2904 7.435192 CCATTCTTTGACCACTTCTTACAAAAC 59.565 37.037 0.00 0.00 31.70 2.43
2872 2919 6.439375 TCTTACAAAACCTATCACTAGCAGGA 59.561 38.462 7.16 0.00 33.44 3.86
2876 2923 5.855740 AAACCTATCACTAGCAGGAGTAC 57.144 43.478 7.16 0.00 33.44 2.73
2879 2926 5.269991 ACCTATCACTAGCAGGAGTACAAA 58.730 41.667 7.16 0.00 33.44 2.83
2880 2927 5.127356 ACCTATCACTAGCAGGAGTACAAAC 59.873 44.000 7.16 0.00 33.44 2.93
2881 2928 5.127194 CCTATCACTAGCAGGAGTACAAACA 59.873 44.000 0.00 0.00 0.00 2.83
2882 2929 5.683876 ATCACTAGCAGGAGTACAAACAT 57.316 39.130 0.00 0.00 0.00 2.71
2899 2946 9.520204 GTACAAACATACATACGTACTTGGTAT 57.480 33.333 0.00 1.53 0.00 2.73
2940 2988 4.232221 ACATGTACGTACACGAAAAGGAG 58.768 43.478 29.54 13.08 43.02 3.69
2949 2997 4.254402 ACACGAAAAGGAGAAGGTAGAC 57.746 45.455 0.00 0.00 0.00 2.59
2955 3003 6.096564 ACGAAAAGGAGAAGGTAGACGAATAT 59.903 38.462 0.00 0.00 0.00 1.28
2956 3004 7.284034 ACGAAAAGGAGAAGGTAGACGAATATA 59.716 37.037 0.00 0.00 0.00 0.86
3075 3123 3.732471 CGGTTCGTTGGATTTTTGTGTGT 60.732 43.478 0.00 0.00 0.00 3.72
3102 3150 1.579084 GGTCAGTGACTCGACGAGCT 61.579 60.000 24.38 10.97 32.04 4.09
3123 3171 2.930950 ACGGGTGATGATGGGTTTATG 58.069 47.619 0.00 0.00 0.00 1.90
3204 3255 1.080569 GGCGCCAAAGTCATTGTGG 60.081 57.895 24.80 0.00 37.32 4.17
3205 3256 1.523154 GGCGCCAAAGTCATTGTGGA 61.523 55.000 24.80 0.00 37.32 4.02
3220 3288 1.063190 TGTGGACTAGACCGGATGGAT 60.063 52.381 9.46 0.00 39.21 3.41
3221 3289 1.341531 GTGGACTAGACCGGATGGATG 59.658 57.143 9.46 0.00 39.21 3.51
3222 3290 1.063190 TGGACTAGACCGGATGGATGT 60.063 52.381 9.46 0.00 39.21 3.06
3223 3291 2.040178 GGACTAGACCGGATGGATGTT 58.960 52.381 9.46 0.00 39.21 2.71
3224 3292 3.228453 GGACTAGACCGGATGGATGTTA 58.772 50.000 9.46 0.00 39.21 2.41
3225 3293 3.256136 GGACTAGACCGGATGGATGTTAG 59.744 52.174 9.46 0.37 39.21 2.34
3226 3294 2.628657 ACTAGACCGGATGGATGTTAGC 59.371 50.000 9.46 0.00 39.21 3.09
3227 3295 0.759346 AGACCGGATGGATGTTAGCC 59.241 55.000 9.46 0.00 39.21 3.93
3271 3339 4.047822 GCTGAACTTGTCGATATCAGAGG 58.952 47.826 13.51 0.00 39.85 3.69
3299 3368 1.610038 TCTGCTTGTTCGACGAAGGTA 59.390 47.619 11.25 3.47 0.00 3.08
3325 3394 2.561569 GGGGACATCCGATAGTTGTTG 58.438 52.381 0.00 0.00 36.71 3.33
3370 3442 6.596309 AGATTACTTCATGTCAGAGACACA 57.404 37.500 1.43 0.00 45.65 3.72
3373 3445 8.753133 AGATTACTTCATGTCAGAGACACATTA 58.247 33.333 1.43 0.00 45.65 1.90
3377 3449 8.037382 ACTTCATGTCAGAGACACATTATTTG 57.963 34.615 1.43 0.00 45.65 2.32
3391 3463 6.548622 ACACATTATTTGCATAGATTCAGGCT 59.451 34.615 0.00 0.00 0.00 4.58
3394 3466 7.175641 ACATTATTTGCATAGATTCAGGCTACC 59.824 37.037 0.00 0.00 0.00 3.18
3397 3469 2.224042 TGCATAGATTCAGGCTACCGTG 60.224 50.000 0.00 0.00 0.00 4.94
3401 3473 0.175760 GATTCAGGCTACCGTGCAGA 59.824 55.000 0.00 0.00 34.04 4.26
3466 5191 8.834004 AGTAGGAGTATATGGTCAGTTACAAA 57.166 34.615 0.00 0.00 0.00 2.83
3480 5563 2.128771 TACAAAAGATGAGGCCCAGC 57.871 50.000 0.00 0.00 0.00 4.85
3497 5580 2.928757 CCAGCTCAGAAAGAAGACATCG 59.071 50.000 0.00 0.00 0.00 3.84
3549 5632 1.066858 GTTGCCCTTCTCTCGTCATCA 60.067 52.381 0.00 0.00 0.00 3.07
3577 7456 0.533491 TTGCGTAACCGTAGCTCCAT 59.467 50.000 0.00 0.00 36.15 3.41
3589 7468 0.763652 AGCTCCATTGCGGATGAGAT 59.236 50.000 1.75 0.00 45.19 2.75
3597 7476 1.592669 GCGGATGAGATGGTGACCG 60.593 63.158 0.00 0.00 42.63 4.79
3599 7478 1.826024 GGATGAGATGGTGACCGCT 59.174 57.895 0.00 0.00 0.00 5.52
3632 7511 1.475034 GCATATCACCGCAAGAGGGAA 60.475 52.381 0.00 0.00 43.02 3.97
3638 7517 2.510238 CGCAAGAGGGAAGAGCGG 60.510 66.667 0.00 0.00 44.20 5.52
3644 7523 2.604686 AGGGAAGAGCGGCTGACA 60.605 61.111 7.50 0.00 0.00 3.58
3655 7534 4.120331 GCTGACAATGCCACGGCC 62.120 66.667 5.42 0.00 41.09 6.13
3707 7586 2.743538 TCGTGGCTGCTGCATGAC 60.744 61.111 17.89 9.34 41.91 3.06
3724 7605 3.047280 CGTGCCAAGTAAGCCGCA 61.047 61.111 0.00 0.00 0.00 5.69
3753 7634 2.819595 GAGCAGCCGCGGATGAAA 60.820 61.111 44.64 0.00 45.49 2.69
3777 7658 3.441101 TGACCAACACATAGCCTAGAGT 58.559 45.455 0.00 0.00 0.00 3.24
3778 7659 3.195610 TGACCAACACATAGCCTAGAGTG 59.804 47.826 5.77 5.77 37.95 3.51
3779 7660 2.093447 ACCAACACATAGCCTAGAGTGC 60.093 50.000 6.93 0.00 35.47 4.40
3780 7661 2.093500 CCAACACATAGCCTAGAGTGCA 60.093 50.000 6.93 0.00 35.47 4.57
3782 7663 4.194640 CAACACATAGCCTAGAGTGCAAT 58.805 43.478 6.93 0.00 35.47 3.56
3784 7665 3.198635 ACACATAGCCTAGAGTGCAATGT 59.801 43.478 0.00 0.00 35.47 2.71
3785 7666 3.558829 CACATAGCCTAGAGTGCAATGTG 59.441 47.826 7.70 7.70 0.00 3.21
3787 7668 0.987294 AGCCTAGAGTGCAATGTGGT 59.013 50.000 0.00 0.00 0.00 4.16
3788 7669 1.065854 AGCCTAGAGTGCAATGTGGTC 60.066 52.381 0.00 0.00 0.00 4.02
3789 7670 1.065854 GCCTAGAGTGCAATGTGGTCT 60.066 52.381 0.00 0.00 0.00 3.85
3790 7671 2.625737 CCTAGAGTGCAATGTGGTCTG 58.374 52.381 0.00 0.00 0.00 3.51
3791 7672 2.005451 CTAGAGTGCAATGTGGTCTGC 58.995 52.381 0.00 0.00 39.09 4.26
3792 7673 0.607489 AGAGTGCAATGTGGTCTGCC 60.607 55.000 0.00 0.00 37.79 4.85
3793 7674 1.915614 GAGTGCAATGTGGTCTGCCG 61.916 60.000 0.00 0.00 37.79 5.69
3794 7675 2.112928 TGCAATGTGGTCTGCCGT 59.887 55.556 0.00 0.00 37.79 5.68
3795 7676 2.260154 TGCAATGTGGTCTGCCGTG 61.260 57.895 0.00 0.00 37.79 4.94
3796 7677 2.562912 CAATGTGGTCTGCCGTGC 59.437 61.111 0.00 0.00 37.67 5.34
3797 7678 1.968017 CAATGTGGTCTGCCGTGCT 60.968 57.895 0.00 0.00 37.67 4.40
3798 7679 1.672356 AATGTGGTCTGCCGTGCTC 60.672 57.895 0.00 0.00 37.67 4.26
3799 7680 3.939837 ATGTGGTCTGCCGTGCTCG 62.940 63.158 0.14 0.14 37.67 5.03
3800 7681 4.664677 GTGGTCTGCCGTGCTCGT 62.665 66.667 7.47 0.00 37.67 4.18
3801 7682 3.923864 TGGTCTGCCGTGCTCGTT 61.924 61.111 7.47 0.00 37.67 3.85
3802 7683 2.665185 GGTCTGCCGTGCTCGTTT 60.665 61.111 7.47 0.00 35.01 3.60
3803 7684 2.668280 GGTCTGCCGTGCTCGTTTC 61.668 63.158 7.47 0.00 35.01 2.78
3804 7685 1.954146 GTCTGCCGTGCTCGTTTCA 60.954 57.895 7.47 1.70 35.01 2.69
3805 7686 1.227409 TCTGCCGTGCTCGTTTCAA 60.227 52.632 7.47 0.00 35.01 2.69
3806 7687 0.812014 TCTGCCGTGCTCGTTTCAAA 60.812 50.000 7.47 0.00 35.01 2.69
3807 7688 0.028770 CTGCCGTGCTCGTTTCAAAA 59.971 50.000 7.47 0.00 35.01 2.44
3808 7689 0.452184 TGCCGTGCTCGTTTCAAAAA 59.548 45.000 7.47 0.00 35.01 1.94
3828 7709 0.667993 AAAATGTGGTCTGCCGTGTG 59.332 50.000 0.00 0.00 37.67 3.82
3830 7711 0.036732 AATGTGGTCTGCCGTGTGAT 59.963 50.000 0.00 0.00 37.67 3.06
3840 7721 0.313672 GCCGTGTGATGCTGGAAAAA 59.686 50.000 0.00 0.00 0.00 1.94
3922 7803 5.592104 TTGTGTCTTGCGAGGAATCTATA 57.408 39.130 0.00 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 6.075984 CCCACAGTACTCCTATACCTTGTAT 58.924 44.000 0.00 0.00 0.00 2.29
523 524 7.384660 GCATGAGATACGATTCTTCTTGATTCT 59.615 37.037 0.00 0.00 0.00 2.40
549 550 5.593909 TGCTCCCAAATTATCACACCATAAG 59.406 40.000 0.00 0.00 0.00 1.73
893 894 5.178067 GCCGCGTGGTAGTTTATATTAATGT 59.822 40.000 17.91 0.00 37.67 2.71
897 898 4.549458 GAGCCGCGTGGTAGTTTATATTA 58.451 43.478 17.91 0.00 37.67 0.98
1209 1216 5.343249 TCTCAAAAGTCAAGAAAAGCAAGC 58.657 37.500 0.00 0.00 0.00 4.01
1221 1228 3.845781 AACCAGCTCTCTCAAAAGTCA 57.154 42.857 0.00 0.00 0.00 3.41
1228 1262 3.374042 AGCTACTAACCAGCTCTCTCA 57.626 47.619 0.00 0.00 46.37 3.27
1242 1276 2.249139 ACAACTCTCCCGAAAGCTACT 58.751 47.619 0.00 0.00 0.00 2.57
1245 1279 1.141053 ACAACAACTCTCCCGAAAGCT 59.859 47.619 0.00 0.00 0.00 3.74
1251 1285 2.157668 CGAATCAACAACAACTCTCCCG 59.842 50.000 0.00 0.00 0.00 5.14
1252 1286 3.139077 ACGAATCAACAACAACTCTCCC 58.861 45.455 0.00 0.00 0.00 4.30
2569 2604 3.781307 TCCAGGATCCCGTTGGCG 61.781 66.667 8.55 0.00 37.95 5.69
2590 2625 1.517257 CCGGCTGAAGTCGTAGCAG 60.517 63.158 3.37 0.00 42.34 4.24
2857 2904 5.127194 TGTTTGTACTCCTGCTAGTGATAGG 59.873 44.000 0.00 0.00 0.00 2.57
2872 2919 7.605449 ACCAAGTACGTATGTATGTTTGTACT 58.395 34.615 0.00 0.00 42.99 2.73
2914 2961 5.284660 CCTTTTCGTGTACGTACATGTACTC 59.715 44.000 35.05 20.23 44.01 2.59
2940 2988 5.779922 TGCCATGTATATTCGTCTACCTTC 58.220 41.667 0.00 0.00 0.00 3.46
2949 2997 3.614176 CGTCATCCTGCCATGTATATTCG 59.386 47.826 0.00 0.00 0.00 3.34
2955 3003 1.686587 CCTACGTCATCCTGCCATGTA 59.313 52.381 0.00 0.00 0.00 2.29
2956 3004 0.465705 CCTACGTCATCCTGCCATGT 59.534 55.000 0.00 0.00 0.00 3.21
3052 3100 1.784283 CACAAAAATCCAACGAACCGC 59.216 47.619 0.00 0.00 0.00 5.68
3075 3123 2.027024 GTCACTGACCGCGACACA 59.973 61.111 8.23 3.45 0.00 3.72
3102 3150 3.712218 TCATAAACCCATCATCACCCGTA 59.288 43.478 0.00 0.00 0.00 4.02
3123 3171 3.202595 TCCCTCCTAACTCTCCACTAGTC 59.797 52.174 0.00 0.00 0.00 2.59
3204 3255 3.305471 GCTAACATCCATCCGGTCTAGTC 60.305 52.174 0.00 0.00 0.00 2.59
3205 3256 2.628657 GCTAACATCCATCCGGTCTAGT 59.371 50.000 0.00 0.00 0.00 2.57
3220 3288 0.331278 CATCCCCCAACAGGCTAACA 59.669 55.000 0.00 0.00 0.00 2.41
3221 3289 0.395724 CCATCCCCCAACAGGCTAAC 60.396 60.000 0.00 0.00 0.00 2.34
3222 3290 0.849094 ACCATCCCCCAACAGGCTAA 60.849 55.000 0.00 0.00 0.00 3.09
3223 3291 0.849094 AACCATCCCCCAACAGGCTA 60.849 55.000 0.00 0.00 0.00 3.93
3224 3292 2.169810 AACCATCCCCCAACAGGCT 61.170 57.895 0.00 0.00 0.00 4.58
3225 3293 1.984026 CAACCATCCCCCAACAGGC 60.984 63.158 0.00 0.00 0.00 4.85
3226 3294 0.611896 GACAACCATCCCCCAACAGG 60.612 60.000 0.00 0.00 0.00 4.00
3227 3295 0.960364 CGACAACCATCCCCCAACAG 60.960 60.000 0.00 0.00 0.00 3.16
3271 3339 0.955919 CGAACAAGCAGAAGGGGTCC 60.956 60.000 0.00 0.00 0.00 4.46
3282 3350 2.853003 GAGATACCTTCGTCGAACAAGC 59.147 50.000 2.90 0.00 0.00 4.01
3325 3394 2.287977 AGTGTTTTAGCCCTTGGTCC 57.712 50.000 0.00 0.00 0.00 4.46
3360 3432 8.969260 AATCTATGCAAATAATGTGTCTCTGA 57.031 30.769 0.00 0.00 0.00 3.27
3370 3442 6.372659 CGGTAGCCTGAATCTATGCAAATAAT 59.627 38.462 0.00 0.00 0.00 1.28
3373 3445 4.067896 CGGTAGCCTGAATCTATGCAAAT 58.932 43.478 0.00 0.00 0.00 2.32
3377 3449 2.408050 CACGGTAGCCTGAATCTATGC 58.592 52.381 0.00 0.00 0.00 3.14
3391 3463 1.066716 GGGTGTTACATCTGCACGGTA 60.067 52.381 0.00 0.00 34.25 4.02
3394 3466 2.268298 GTAGGGTGTTACATCTGCACG 58.732 52.381 0.00 0.00 34.25 5.34
3397 3469 2.537401 GACGTAGGGTGTTACATCTGC 58.463 52.381 0.00 0.00 0.00 4.26
3401 3473 1.206371 GCAGGACGTAGGGTGTTACAT 59.794 52.381 0.00 0.00 0.00 2.29
3445 5170 9.046296 CATCTTTTGTAACTGACCATATACTCC 57.954 37.037 0.00 0.00 0.00 3.85
3446 5171 9.817809 TCATCTTTTGTAACTGACCATATACTC 57.182 33.333 0.00 0.00 0.00 2.59
3447 5172 9.823647 CTCATCTTTTGTAACTGACCATATACT 57.176 33.333 0.00 0.00 0.00 2.12
3448 5173 9.046296 CCTCATCTTTTGTAACTGACCATATAC 57.954 37.037 0.00 0.00 0.00 1.47
3449 5174 7.715249 GCCTCATCTTTTGTAACTGACCATATA 59.285 37.037 0.00 0.00 0.00 0.86
3450 5175 6.543831 GCCTCATCTTTTGTAACTGACCATAT 59.456 38.462 0.00 0.00 0.00 1.78
3466 5191 0.619832 TCTGAGCTGGGCCTCATCTT 60.620 55.000 4.53 0.00 40.77 2.40
3480 5563 5.261209 AGGATCGATGTCTTCTTTCTGAG 57.739 43.478 0.54 0.00 0.00 3.35
3497 5580 0.100146 ACGACGGCGAGTAAAGGATC 59.900 55.000 22.49 0.00 41.64 3.36
3549 5632 1.002315 ACGGTTACGCAAGGTAATGGT 59.998 47.619 0.00 0.00 42.74 3.55
3577 7456 0.107703 GGTCACCATCTCATCCGCAA 60.108 55.000 0.00 0.00 0.00 4.85
3612 7491 0.106708 TCCCTCTTGCGGTGATATGC 59.893 55.000 0.00 0.00 0.00 3.14
3614 7493 2.366916 CTCTTCCCTCTTGCGGTGATAT 59.633 50.000 0.00 0.00 0.00 1.63
3632 7511 2.437359 GGCATTGTCAGCCGCTCT 60.437 61.111 0.00 0.00 43.15 4.09
3638 7517 4.120331 GGCCGTGGCATTGTCAGC 62.120 66.667 13.76 0.00 44.11 4.26
3673 7552 4.702081 AGCTCGACGACGTGGTGC 62.702 66.667 23.69 23.69 41.02 5.01
3703 7582 1.019278 CGGCTTACTTGGCACGTCAT 61.019 55.000 0.00 0.00 0.00 3.06
3707 7586 3.027170 CTGCGGCTTACTTGGCACG 62.027 63.158 0.00 0.00 0.00 5.34
3753 7634 1.362224 AGGCTATGTGTTGGTCACCT 58.638 50.000 0.00 0.00 45.61 4.00
3773 7654 0.607489 GGCAGACCACATTGCACTCT 60.607 55.000 0.00 0.00 42.02 3.24
3777 7658 2.112928 ACGGCAGACCACATTGCA 59.887 55.556 0.00 0.00 42.02 4.08
3778 7659 2.562912 CACGGCAGACCACATTGC 59.437 61.111 0.00 0.00 39.56 3.56
3779 7660 1.915614 GAGCACGGCAGACCACATTG 61.916 60.000 0.00 0.00 34.57 2.82
3780 7661 1.672356 GAGCACGGCAGACCACATT 60.672 57.895 0.00 0.00 34.57 2.71
3782 7663 4.662961 CGAGCACGGCAGACCACA 62.663 66.667 0.00 0.00 34.57 4.17
3784 7665 3.454587 AAACGAGCACGGCAGACCA 62.455 57.895 8.74 0.00 44.46 4.02
3785 7666 2.665185 AAACGAGCACGGCAGACC 60.665 61.111 8.74 0.00 44.46 3.85
3787 7668 0.812014 TTTGAAACGAGCACGGCAGA 60.812 50.000 8.74 0.00 44.46 4.26
3788 7669 0.028770 TTTTGAAACGAGCACGGCAG 59.971 50.000 8.74 0.00 44.46 4.85
3789 7670 0.452184 TTTTTGAAACGAGCACGGCA 59.548 45.000 8.74 0.13 44.46 5.69
3790 7671 3.243855 TTTTTGAAACGAGCACGGC 57.756 47.368 8.74 0.00 44.46 5.68
3808 7689 1.066908 CACACGGCAGACCACATTTTT 59.933 47.619 0.00 0.00 34.57 1.94
3809 7690 0.667993 CACACGGCAGACCACATTTT 59.332 50.000 0.00 0.00 34.57 1.82
3810 7691 0.179032 TCACACGGCAGACCACATTT 60.179 50.000 0.00 0.00 34.57 2.32
3811 7692 0.036732 ATCACACGGCAGACCACATT 59.963 50.000 0.00 0.00 34.57 2.71
3812 7693 0.674581 CATCACACGGCAGACCACAT 60.675 55.000 0.00 0.00 34.57 3.21
3813 7694 1.301637 CATCACACGGCAGACCACA 60.302 57.895 0.00 0.00 34.57 4.17
3820 7701 0.821301 TTTTCCAGCATCACACGGCA 60.821 50.000 0.00 0.00 0.00 5.69
3824 7705 2.798976 TGCTTTTTCCAGCATCACAC 57.201 45.000 0.00 0.00 45.14 3.82
3904 7785 5.833082 TGAGTTATAGATTCCTCGCAAGAC 58.167 41.667 0.00 0.00 45.01 3.01
3906 7787 6.078202 TCTGAGTTATAGATTCCTCGCAAG 57.922 41.667 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.