Multiple sequence alignment - TraesCS6A01G283100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G283100 chr6A 100.000 3052 0 0 1 3052 514325327 514328378 0.000000e+00 5637.0
1 TraesCS6A01G283100 chr6D 91.559 1860 85 24 500 2347 372364052 372365851 0.000000e+00 2499.0
2 TraesCS6A01G283100 chr6D 84.732 596 40 25 2346 2919 372366208 372366774 1.600000e-152 549.0
3 TraesCS6A01G283100 chr6D 89.275 345 24 7 1 339 372363713 372364050 1.310000e-113 420.0
4 TraesCS6A01G283100 chr6D 80.537 149 12 8 2588 2722 9548839 9548694 6.960000e-17 99.0
5 TraesCS6A01G283100 chr5B 92.727 165 11 1 335 498 45271440 45271604 1.410000e-58 237.0
6 TraesCS6A01G283100 chr5B 83.846 130 9 8 2598 2719 477442993 477442868 2.490000e-21 113.0
7 TraesCS6A01G283100 chr2D 93.210 162 10 1 338 498 87407362 87407523 1.410000e-58 237.0
8 TraesCS6A01G283100 chr2D 90.751 173 14 2 338 509 81004755 81004926 2.370000e-56 230.0
9 TraesCS6A01G283100 chr7B 93.168 161 9 2 339 498 586635025 586635184 5.090000e-58 235.0
10 TraesCS6A01G283100 chr7B 82.249 169 18 8 2564 2722 3551138 3550972 5.310000e-28 135.0
11 TraesCS6A01G283100 chr7B 79.641 167 23 4 2564 2722 116121529 116121692 3.220000e-20 110.0
12 TraesCS6A01G283100 chr6B 91.765 170 13 1 333 501 132353584 132353415 5.090000e-58 235.0
13 TraesCS6A01G283100 chr4B 92.638 163 11 1 337 498 340851633 340851795 1.830000e-57 233.0
14 TraesCS6A01G283100 chr4B 90.395 177 14 3 330 503 372049014 372048838 2.370000e-56 230.0
15 TraesCS6A01G283100 chr4B 96.429 56 2 0 2667 2722 654706179 654706124 3.240000e-15 93.5
16 TraesCS6A01G283100 chr3D 92.638 163 11 1 337 498 613760347 613760509 1.830000e-57 233.0
17 TraesCS6A01G283100 chr2B 92.593 162 11 1 338 498 379779066 379779227 6.580000e-57 231.0
18 TraesCS6A01G283100 chr2B 85.714 168 14 3 2563 2722 10767619 10767454 5.230000e-38 169.0
19 TraesCS6A01G283100 chr4D 83.784 148 11 8 2575 2714 131038802 131038944 8.880000e-26 128.0
20 TraesCS6A01G283100 chr1D 80.982 163 21 3 2564 2718 178752159 178752319 1.490000e-23 121.0
21 TraesCS6A01G283100 chr7A 83.871 124 12 2 2607 2722 11787634 11787511 8.950000e-21 111.0
22 TraesCS6A01G283100 chr7A 83.871 124 12 2 2607 2722 11821680 11821557 8.950000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G283100 chr6A 514325327 514328378 3051 False 5637 5637 100.000 1 3052 1 chr6A.!!$F1 3051
1 TraesCS6A01G283100 chr6D 372363713 372366774 3061 False 1156 2499 88.522 1 2919 3 chr6D.!!$F1 2918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.252558 TCCCAGGTACCAGGAACTCC 60.253 60.0 24.36 0.0 34.6 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2195 2211 0.466124 GCAGGAACCCTACAGCCTAG 59.534 60.0 0.0 0.0 29.64 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.860898 ACAATCCTTACAGAAATTAGAAATTGC 57.139 29.630 0.00 0.00 0.00 3.56
66 67 2.949447 AGAAATTGCACACCAGTCCTT 58.051 42.857 0.00 0.00 0.00 3.36
68 69 3.068590 AGAAATTGCACACCAGTCCTTTG 59.931 43.478 0.00 0.00 0.00 2.77
69 70 1.331214 ATTGCACACCAGTCCTTTGG 58.669 50.000 0.00 0.00 44.09 3.28
73 74 1.963515 GCACACCAGTCCTTTGGAAAT 59.036 47.619 0.00 0.00 40.87 2.17
81 82 4.202111 CCAGTCCTTTGGAAATTTGACGTT 60.202 41.667 0.00 0.00 40.87 3.99
91 92 5.578727 TGGAAATTTGACGTTGTTTTCCTTG 59.421 36.000 22.55 0.00 43.62 3.61
101 102 2.722094 TGTTTTCCTTGTGCACTCACT 58.278 42.857 19.41 0.00 43.49 3.41
159 160 3.711190 TGGACCAGCTAGCATGAATCTAA 59.289 43.478 18.83 4.61 0.00 2.10
162 163 4.122776 ACCAGCTAGCATGAATCTAAACG 58.877 43.478 18.83 0.00 0.00 3.60
163 164 4.122776 CCAGCTAGCATGAATCTAAACGT 58.877 43.478 18.83 0.00 0.00 3.99
164 165 5.163447 ACCAGCTAGCATGAATCTAAACGTA 60.163 40.000 18.83 0.00 0.00 3.57
183 184 3.303495 CGTAGTACCAAGCACATTTCGAG 59.697 47.826 0.00 0.00 0.00 4.04
199 200 0.539051 CGAGCTGGGAAAGAGACCAT 59.461 55.000 0.00 0.00 35.93 3.55
201 202 1.836802 GAGCTGGGAAAGAGACCATCT 59.163 52.381 0.00 0.00 41.27 2.90
218 219 5.195940 ACCATCTGAACAAGGATATGTTGG 58.804 41.667 0.00 0.00 43.31 3.77
219 220 5.195940 CCATCTGAACAAGGATATGTTGGT 58.804 41.667 0.00 0.00 43.31 3.67
220 221 6.069673 ACCATCTGAACAAGGATATGTTGGTA 60.070 38.462 0.00 0.00 43.31 3.25
221 222 6.260936 CCATCTGAACAAGGATATGTTGGTAC 59.739 42.308 0.00 0.00 43.31 3.34
248 249 1.584724 CATCCCAGGTACCAGGAACT 58.415 55.000 24.36 7.97 43.88 3.01
250 251 0.252558 TCCCAGGTACCAGGAACTCC 60.253 60.000 24.36 0.00 34.60 3.85
269 271 5.126067 ACTCCGGAATCAGGTCATATTTTG 58.874 41.667 5.23 0.00 0.00 2.44
280 282 9.699410 ATCAGGTCATATTTTGGAGAATTTACA 57.301 29.630 0.00 0.00 0.00 2.41
297 304 7.657354 AGAATTTACATTGTTTTCAGGCTTTCC 59.343 33.333 0.00 0.00 0.00 3.13
305 312 1.237285 TTCAGGCTTTCCGCAGAAGC 61.237 55.000 7.05 7.05 41.67 3.86
316 323 3.787001 CAGAAGCCCCTCCGTCCC 61.787 72.222 0.00 0.00 0.00 4.46
322 329 2.995547 CCCCTCCGTCCCGAATTT 59.004 61.111 0.00 0.00 0.00 1.82
323 330 1.974973 GCCCCTCCGTCCCGAATTTA 61.975 60.000 0.00 0.00 0.00 1.40
324 331 0.763035 CCCCTCCGTCCCGAATTTAT 59.237 55.000 0.00 0.00 0.00 1.40
330 337 3.936453 CTCCGTCCCGAATTTATTTGTCA 59.064 43.478 0.00 0.00 0.00 3.58
339 346 7.928706 TCCCGAATTTATTTGTCACAAAAATGT 59.071 29.630 7.14 0.00 0.00 2.71
340 347 9.197694 CCCGAATTTATTTGTCACAAAAATGTA 57.802 29.630 7.14 0.00 0.00 2.29
345 352 9.705290 ATTTATTTGTCACAAAAATGTACTCCC 57.295 29.630 7.14 0.00 0.00 4.30
346 353 6.976934 ATTTGTCACAAAAATGTACTCCCT 57.023 33.333 7.14 0.00 0.00 4.20
347 354 6.385649 TTTGTCACAAAAATGTACTCCCTC 57.614 37.500 0.00 0.00 0.00 4.30
348 355 5.304686 TGTCACAAAAATGTACTCCCTCT 57.695 39.130 0.00 0.00 0.00 3.69
349 356 5.063204 TGTCACAAAAATGTACTCCCTCTG 58.937 41.667 0.00 0.00 0.00 3.35
350 357 5.063880 GTCACAAAAATGTACTCCCTCTGT 58.936 41.667 0.00 0.00 0.00 3.41
351 358 5.531287 GTCACAAAAATGTACTCCCTCTGTT 59.469 40.000 0.00 0.00 0.00 3.16
352 359 5.763204 TCACAAAAATGTACTCCCTCTGTTC 59.237 40.000 0.00 0.00 0.00 3.18
353 360 5.765182 CACAAAAATGTACTCCCTCTGTTCT 59.235 40.000 0.00 0.00 0.00 3.01
354 361 6.934645 CACAAAAATGTACTCCCTCTGTTCTA 59.065 38.462 0.00 0.00 0.00 2.10
355 362 7.444183 CACAAAAATGTACTCCCTCTGTTCTAA 59.556 37.037 0.00 0.00 0.00 2.10
356 363 7.996644 ACAAAAATGTACTCCCTCTGTTCTAAA 59.003 33.333 0.00 0.00 0.00 1.85
357 364 9.014297 CAAAAATGTACTCCCTCTGTTCTAAAT 57.986 33.333 0.00 0.00 0.00 1.40
363 370 9.710818 TGTACTCCCTCTGTTCTAAATATAAGT 57.289 33.333 0.00 0.00 0.00 2.24
366 373 9.495382 ACTCCCTCTGTTCTAAATATAAGTCTT 57.505 33.333 0.00 0.00 0.00 3.01
400 407 9.772973 ATTTCATTATAAACTACATACGGAGCA 57.227 29.630 0.00 0.00 0.00 4.26
401 408 9.602568 TTTCATTATAAACTACATACGGAGCAA 57.397 29.630 0.00 0.00 0.00 3.91
402 409 9.602568 TTCATTATAAACTACATACGGAGCAAA 57.397 29.630 0.00 0.00 0.00 3.68
403 410 9.602568 TCATTATAAACTACATACGGAGCAAAA 57.397 29.630 0.00 0.00 0.00 2.44
408 415 7.916914 AAACTACATACGGAGCAAAATAAGT 57.083 32.000 0.00 0.00 0.00 2.24
410 417 9.439500 AAACTACATACGGAGCAAAATAAGTAA 57.561 29.630 0.00 0.00 0.00 2.24
411 418 9.439500 AACTACATACGGAGCAAAATAAGTAAA 57.561 29.630 0.00 0.00 0.00 2.01
412 419 9.609346 ACTACATACGGAGCAAAATAAGTAAAT 57.391 29.630 0.00 0.00 0.00 1.40
414 421 8.732746 ACATACGGAGCAAAATAAGTAAATCT 57.267 30.769 0.00 0.00 0.00 2.40
415 422 9.826574 ACATACGGAGCAAAATAAGTAAATCTA 57.173 29.630 0.00 0.00 0.00 1.98
417 424 9.826574 ATACGGAGCAAAATAAGTAAATCTACA 57.173 29.630 0.00 0.00 0.00 2.74
418 425 8.732746 ACGGAGCAAAATAAGTAAATCTACAT 57.267 30.769 0.00 0.00 0.00 2.29
419 426 9.174166 ACGGAGCAAAATAAGTAAATCTACATT 57.826 29.630 0.00 0.00 0.00 2.71
420 427 9.651718 CGGAGCAAAATAAGTAAATCTACATTC 57.348 33.333 0.00 0.00 0.00 2.67
460 467 5.657474 ACATCCGTATGTAGTTTGTAGTGG 58.343 41.667 0.00 0.00 44.66 4.00
461 468 5.419788 ACATCCGTATGTAGTTTGTAGTGGA 59.580 40.000 0.00 0.00 44.66 4.02
462 469 5.981088 TCCGTATGTAGTTTGTAGTGGAA 57.019 39.130 0.00 0.00 0.00 3.53
463 470 6.534475 TCCGTATGTAGTTTGTAGTGGAAT 57.466 37.500 0.00 0.00 0.00 3.01
464 471 6.567050 TCCGTATGTAGTTTGTAGTGGAATC 58.433 40.000 0.00 0.00 0.00 2.52
465 472 6.379133 TCCGTATGTAGTTTGTAGTGGAATCT 59.621 38.462 0.00 0.00 0.00 2.40
466 473 7.039882 CCGTATGTAGTTTGTAGTGGAATCTT 58.960 38.462 0.00 0.00 0.00 2.40
467 474 7.548075 CCGTATGTAGTTTGTAGTGGAATCTTT 59.452 37.037 0.00 0.00 0.00 2.52
468 475 9.577110 CGTATGTAGTTTGTAGTGGAATCTTTA 57.423 33.333 0.00 0.00 0.00 1.85
492 499 9.558396 TTAAAAAGACTTACATTTAGGAACGGA 57.442 29.630 0.00 0.00 0.00 4.69
493 500 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
494 501 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
495 502 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
496 503 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
497 504 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
498 505 2.829023 ACATTTAGGAACGGAGGGAGA 58.171 47.619 0.00 0.00 0.00 3.71
504 511 2.108970 AGGAACGGAGGGAGAATGTAC 58.891 52.381 0.00 0.00 0.00 2.90
518 525 9.670442 AGGGAGAATGTACCTAGACATATTTTA 57.330 33.333 0.00 0.00 39.16 1.52
519 526 9.930693 GGGAGAATGTACCTAGACATATTTTAG 57.069 37.037 0.00 0.00 39.16 1.85
526 533 9.399797 TGTACCTAGACATATTTTAGTTCGAGA 57.600 33.333 0.00 0.00 0.00 4.04
529 536 7.868415 ACCTAGACATATTTTAGTTCGAGATGC 59.132 37.037 0.00 0.00 0.00 3.91
530 537 7.867909 CCTAGACATATTTTAGTTCGAGATGCA 59.132 37.037 0.00 0.00 0.00 3.96
531 538 9.416794 CTAGACATATTTTAGTTCGAGATGCAT 57.583 33.333 0.00 0.00 0.00 3.96
532 539 8.304202 AGACATATTTTAGTTCGAGATGCATC 57.696 34.615 19.37 19.37 0.00 3.91
534 541 9.411801 GACATATTTTAGTTCGAGATGCATCTA 57.588 33.333 28.78 12.23 37.25 1.98
535 542 9.935241 ACATATTTTAGTTCGAGATGCATCTAT 57.065 29.630 28.78 16.85 37.25 1.98
565 572 8.246430 ACGACAAGTAATTTATGATAGAGGGA 57.754 34.615 0.00 0.00 0.00 4.20
649 656 2.367529 TGGACGCACCAATGGACTA 58.632 52.632 6.16 0.00 46.75 2.59
651 658 1.338674 TGGACGCACCAATGGACTAAG 60.339 52.381 6.16 0.00 46.75 2.18
652 659 0.727398 GACGCACCAATGGACTAAGC 59.273 55.000 6.16 0.84 0.00 3.09
653 660 0.324943 ACGCACCAATGGACTAAGCT 59.675 50.000 6.16 0.00 0.00 3.74
654 661 1.553248 ACGCACCAATGGACTAAGCTA 59.447 47.619 6.16 0.00 0.00 3.32
655 662 1.933853 CGCACCAATGGACTAAGCTAC 59.066 52.381 6.16 0.00 0.00 3.58
656 663 2.418746 CGCACCAATGGACTAAGCTACT 60.419 50.000 6.16 0.00 0.00 2.57
657 664 3.181479 CGCACCAATGGACTAAGCTACTA 60.181 47.826 6.16 0.00 0.00 1.82
659 666 4.141914 GCACCAATGGACTAAGCTACTACT 60.142 45.833 6.16 0.00 0.00 2.57
660 667 5.593010 CACCAATGGACTAAGCTACTACTC 58.407 45.833 6.16 0.00 0.00 2.59
661 668 4.650131 ACCAATGGACTAAGCTACTACTCC 59.350 45.833 6.16 0.00 0.00 3.85
662 669 4.649674 CCAATGGACTAAGCTACTACTCCA 59.350 45.833 0.00 0.00 32.42 3.86
664 671 4.587976 TGGACTAAGCTACTACTCCACT 57.412 45.455 0.00 0.00 0.00 4.00
666 673 5.682659 TGGACTAAGCTACTACTCCACTAG 58.317 45.833 0.00 0.00 0.00 2.57
667 674 5.191323 TGGACTAAGCTACTACTCCACTAGT 59.809 44.000 0.00 0.00 42.62 2.57
669 676 7.072202 TGGACTAAGCTACTACTCCACTAGTAT 59.928 40.741 0.00 0.00 39.96 2.12
670 677 7.603784 GGACTAAGCTACTACTCCACTAGTATC 59.396 44.444 0.00 0.00 39.96 2.24
671 678 7.452562 ACTAAGCTACTACTCCACTAGTATCC 58.547 42.308 0.00 0.00 39.96 2.59
672 679 6.518516 AAGCTACTACTCCACTAGTATCCT 57.481 41.667 0.00 0.00 39.96 3.24
673 680 6.518516 AGCTACTACTCCACTAGTATCCTT 57.481 41.667 0.00 0.00 39.96 3.36
674 681 6.913545 AGCTACTACTCCACTAGTATCCTTT 58.086 40.000 0.00 0.00 39.96 3.11
676 683 7.503230 AGCTACTACTCCACTAGTATCCTTTTC 59.497 40.741 0.00 0.00 39.96 2.29
677 684 7.284944 GCTACTACTCCACTAGTATCCTTTTCA 59.715 40.741 0.00 0.00 39.96 2.69
678 685 7.407393 ACTACTCCACTAGTATCCTTTTCAC 57.593 40.000 0.00 0.00 39.96 3.18
679 686 7.183460 ACTACTCCACTAGTATCCTTTTCACT 58.817 38.462 0.00 0.00 39.96 3.41
680 687 6.287589 ACTCCACTAGTATCCTTTTCACTG 57.712 41.667 0.00 0.00 36.36 3.66
681 688 6.017192 ACTCCACTAGTATCCTTTTCACTGA 58.983 40.000 0.00 0.00 36.36 3.41
682 689 6.497259 ACTCCACTAGTATCCTTTTCACTGAA 59.503 38.462 0.00 0.00 36.36 3.02
683 690 6.936279 TCCACTAGTATCCTTTTCACTGAAG 58.064 40.000 0.00 0.00 0.00 3.02
684 691 5.582665 CCACTAGTATCCTTTTCACTGAAGC 59.417 44.000 0.00 0.00 0.00 3.86
685 692 6.402222 CACTAGTATCCTTTTCACTGAAGCT 58.598 40.000 0.00 0.00 0.00 3.74
686 693 6.876257 CACTAGTATCCTTTTCACTGAAGCTT 59.124 38.462 0.00 0.00 0.00 3.74
687 694 7.389053 CACTAGTATCCTTTTCACTGAAGCTTT 59.611 37.037 0.00 0.00 0.00 3.51
688 695 7.939588 ACTAGTATCCTTTTCACTGAAGCTTTT 59.060 33.333 0.00 0.00 0.00 2.27
689 696 7.588497 AGTATCCTTTTCACTGAAGCTTTTT 57.412 32.000 0.00 0.00 0.00 1.94
795 802 2.023741 CATGCGCGCCAGATTCAC 59.976 61.111 30.77 0.00 0.00 3.18
909 916 1.136891 ACTCCAAAAACCTGCAACTGC 59.863 47.619 0.00 0.00 42.50 4.40
927 934 0.597377 GCTTTGGAAAACTGGTGGCG 60.597 55.000 0.00 0.00 0.00 5.69
975 982 0.852777 CCATGCTTATTCCGACGTCG 59.147 55.000 30.33 30.33 39.44 5.12
1182 1189 1.212490 CTACAACGGGTACGGCGAA 59.788 57.895 16.62 0.00 46.48 4.70
1235 1242 4.373116 CGCTAGTGCCACGTGGGT 62.373 66.667 34.58 4.04 39.65 4.51
1364 1371 1.004440 GTGAAGCGGTCAGGAAGCT 60.004 57.895 0.00 0.00 43.90 3.74
1471 1481 2.482142 GCGTTCCAGATTCCTCTCGAAT 60.482 50.000 0.00 0.00 44.20 3.34
1478 1488 5.767665 TCCAGATTCCTCTCGAATAGAAGAG 59.232 44.000 0.00 0.00 41.47 2.85
1479 1489 5.534654 CCAGATTCCTCTCGAATAGAAGAGT 59.465 44.000 0.00 0.00 41.47 3.24
1480 1490 6.437928 CAGATTCCTCTCGAATAGAAGAGTG 58.562 44.000 0.00 0.00 41.47 3.51
1481 1491 6.039270 CAGATTCCTCTCGAATAGAAGAGTGT 59.961 42.308 0.00 0.00 41.47 3.55
1482 1492 6.605594 AGATTCCTCTCGAATAGAAGAGTGTT 59.394 38.462 0.00 0.00 41.47 3.32
1483 1493 7.776030 AGATTCCTCTCGAATAGAAGAGTGTTA 59.224 37.037 0.00 0.00 41.47 2.41
1484 1494 7.698506 TTCCTCTCGAATAGAAGAGTGTTAA 57.301 36.000 0.00 0.00 36.03 2.01
1485 1495 7.323049 TCCTCTCGAATAGAAGAGTGTTAAG 57.677 40.000 0.00 0.00 36.03 1.85
1486 1496 5.974751 CCTCTCGAATAGAAGAGTGTTAAGC 59.025 44.000 0.00 0.00 36.03 3.09
1487 1497 6.404844 CCTCTCGAATAGAAGAGTGTTAAGCA 60.405 42.308 0.00 0.00 36.03 3.91
1488 1498 6.920817 TCTCGAATAGAAGAGTGTTAAGCAA 58.079 36.000 0.00 0.00 36.03 3.91
1489 1499 6.807230 TCTCGAATAGAAGAGTGTTAAGCAAC 59.193 38.462 0.00 0.00 36.03 4.17
1490 1500 6.452242 TCGAATAGAAGAGTGTTAAGCAACA 58.548 36.000 0.00 0.00 42.39 3.33
1545 1555 1.914634 CAGATCGTCGTGGGAAAGAG 58.085 55.000 0.00 0.00 0.00 2.85
1547 1557 0.815734 GATCGTCGTGGGAAAGAGGA 59.184 55.000 0.00 0.00 36.02 3.71
1598 1608 3.188786 GACGTGGTGATCGCAGCC 61.189 66.667 8.82 0.00 41.74 4.85
1635 1645 1.468736 GGTACATCGTCGAGGTCAACC 60.469 57.143 16.77 15.30 0.00 3.77
1907 1917 4.115199 GGGTCGCCATGGGAAGCT 62.115 66.667 15.13 0.00 0.00 3.74
1909 1919 2.045926 GTCGCCATGGGAAGCTGT 60.046 61.111 15.13 0.00 0.00 4.40
2058 2068 0.317160 CAGAGGGTTGTGACACGCTA 59.683 55.000 0.22 0.00 37.20 4.26
2062 2072 1.566018 GGGTTGTGACACGCTACTGC 61.566 60.000 0.22 0.00 0.00 4.40
2063 2073 0.600255 GGTTGTGACACGCTACTGCT 60.600 55.000 0.22 0.00 36.97 4.24
2072 2082 1.812507 CGCTACTGCTCTGCATGCA 60.813 57.895 21.29 21.29 38.13 3.96
2148 2161 1.455402 TTTGGCTTGCCAGCTGTGA 60.455 52.632 13.81 0.00 46.44 3.58
2149 2162 0.828762 TTTGGCTTGCCAGCTGTGAT 60.829 50.000 13.81 0.00 46.44 3.06
2159 2172 7.202526 GCTTGCCAGCTGTGATAATTTATTTA 58.797 34.615 13.81 0.00 43.51 1.40
2192 2208 7.110155 ACGTATCTTATTTTCTTGTGGATGGT 58.890 34.615 0.00 0.00 0.00 3.55
2193 2209 7.280205 ACGTATCTTATTTTCTTGTGGATGGTC 59.720 37.037 0.00 0.00 0.00 4.02
2195 2211 7.872113 ATCTTATTTTCTTGTGGATGGTCTC 57.128 36.000 0.00 0.00 0.00 3.36
2211 2227 2.033372 GTCTCTAGGCTGTAGGGTTCC 58.967 57.143 0.00 0.00 0.00 3.62
2261 2277 6.884295 TGTATGTTTTGGGAGGTTTATCTGAG 59.116 38.462 0.00 0.00 0.00 3.35
2303 2319 2.425143 AGGCACATGTTCCATCGAAT 57.575 45.000 17.16 0.00 0.00 3.34
2304 2320 3.558931 AGGCACATGTTCCATCGAATA 57.441 42.857 17.16 0.00 0.00 1.75
2306 2322 4.067896 AGGCACATGTTCCATCGAATATC 58.932 43.478 17.16 0.00 28.13 1.63
2307 2323 4.067896 GGCACATGTTCCATCGAATATCT 58.932 43.478 9.89 0.00 28.13 1.98
2308 2324 4.153117 GGCACATGTTCCATCGAATATCTC 59.847 45.833 9.89 0.00 28.13 2.75
2310 2326 4.386954 CACATGTTCCATCGAATATCTCCG 59.613 45.833 0.00 0.00 28.13 4.63
2311 2327 4.280929 ACATGTTCCATCGAATATCTCCGA 59.719 41.667 0.00 0.00 39.25 4.55
2313 2329 5.468540 TGTTCCATCGAATATCTCCGAAT 57.531 39.130 0.00 0.00 38.36 3.34
2314 2330 6.584185 TGTTCCATCGAATATCTCCGAATA 57.416 37.500 0.00 0.00 38.36 1.75
2317 2333 8.094548 TGTTCCATCGAATATCTCCGAATAAAT 58.905 33.333 0.00 0.00 38.36 1.40
2343 2359 5.716228 TGTAAATACTACTTCCTCCGTTCCA 59.284 40.000 0.00 0.00 0.00 3.53
2344 2360 5.952347 AAATACTACTTCCTCCGTTCCAT 57.048 39.130 0.00 0.00 0.00 3.41
2354 2727 2.936498 CCTCCGTTCCATAATGTGTGTC 59.064 50.000 0.00 0.00 0.00 3.67
2355 2728 2.936498 CTCCGTTCCATAATGTGTGTCC 59.064 50.000 0.00 0.00 0.00 4.02
2387 2760 4.960469 AGTGGCAGGATGAATGAATTTGAT 59.040 37.500 0.00 0.00 39.69 2.57
2389 2762 4.342951 TGGCAGGATGAATGAATTTGATCC 59.657 41.667 0.00 0.00 39.69 3.36
2391 2764 4.037208 GCAGGATGAATGAATTTGATCCGT 59.963 41.667 0.00 0.00 39.69 4.69
2392 2765 5.516996 CAGGATGAATGAATTTGATCCGTG 58.483 41.667 0.00 0.00 39.69 4.94
2396 2769 7.035004 GGATGAATGAATTTGATCCGTGAAAA 58.965 34.615 0.00 0.00 0.00 2.29
2397 2770 7.707893 GGATGAATGAATTTGATCCGTGAAAAT 59.292 33.333 0.00 0.00 0.00 1.82
2398 2771 9.734620 GATGAATGAATTTGATCCGTGAAAATA 57.265 29.630 0.00 0.00 0.00 1.40
2400 2773 9.518906 TGAATGAATTTGATCCGTGAAAATATG 57.481 29.630 0.00 0.00 0.00 1.78
2401 2774 8.876275 AATGAATTTGATCCGTGAAAATATGG 57.124 30.769 0.00 0.00 0.00 2.74
2402 2775 7.637631 TGAATTTGATCCGTGAAAATATGGA 57.362 32.000 0.00 0.00 39.92 3.41
2403 2776 7.706159 TGAATTTGATCCGTGAAAATATGGAG 58.294 34.615 0.00 0.00 39.04 3.86
2424 2797 5.544562 GGAGTATATTGGTTCTTCTAGCCCT 59.455 44.000 0.00 0.00 0.00 5.19
2436 2809 4.287067 TCTTCTAGCCCTTGTGTGAGATTT 59.713 41.667 0.00 0.00 0.00 2.17
2493 2866 1.269998 ACTCTCAGCGTACAACTGGAC 59.730 52.381 11.78 0.00 35.78 4.02
2494 2867 0.601558 TCTCAGCGTACAACTGGACC 59.398 55.000 11.78 0.00 35.78 4.46
2495 2868 0.317160 CTCAGCGTACAACTGGACCA 59.683 55.000 11.78 0.00 35.78 4.02
2502 2875 4.221262 AGCGTACAACTGGACCAATAACTA 59.779 41.667 0.00 0.00 0.00 2.24
2556 2929 4.346418 AGGAAACTGAATGATATCTCCGCT 59.654 41.667 3.98 0.00 41.13 5.52
2572 2945 0.247736 CGCTGCAAGTTACTCCCTCT 59.752 55.000 0.00 0.00 35.30 3.69
2574 2947 1.002544 GCTGCAAGTTACTCCCTCTGT 59.997 52.381 0.00 0.00 35.30 3.41
2579 2952 5.876357 TGCAAGTTACTCCCTCTGTTTTAT 58.124 37.500 0.00 0.00 0.00 1.40
2580 2953 7.011499 TGCAAGTTACTCCCTCTGTTTTATA 57.989 36.000 0.00 0.00 0.00 0.98
2581 2954 7.455058 TGCAAGTTACTCCCTCTGTTTTATAA 58.545 34.615 0.00 0.00 0.00 0.98
2582 2955 8.107095 TGCAAGTTACTCCCTCTGTTTTATAAT 58.893 33.333 0.00 0.00 0.00 1.28
2583 2956 8.398665 GCAAGTTACTCCCTCTGTTTTATAATG 58.601 37.037 0.00 0.00 0.00 1.90
2584 2957 9.449719 CAAGTTACTCCCTCTGTTTTATAATGT 57.550 33.333 0.00 0.00 0.00 2.71
2589 2962 8.451908 ACTCCCTCTGTTTTATAATGTAATGC 57.548 34.615 0.00 0.00 0.00 3.56
2590 2963 8.052748 ACTCCCTCTGTTTTATAATGTAATGCA 58.947 33.333 0.00 0.00 0.00 3.96
2628 3001 1.788229 AGTCAACCCCCAAAACCTTG 58.212 50.000 0.00 0.00 0.00 3.61
2629 3002 1.289530 AGTCAACCCCCAAAACCTTGA 59.710 47.619 0.00 0.00 34.14 3.02
2630 3003 1.411246 GTCAACCCCCAAAACCTTGAC 59.589 52.381 0.00 0.00 35.37 3.18
2631 3004 1.289530 TCAACCCCCAAAACCTTGACT 59.710 47.619 0.00 0.00 34.14 3.41
2632 3005 2.514582 TCAACCCCCAAAACCTTGACTA 59.485 45.455 0.00 0.00 34.14 2.59
2633 3006 3.052793 TCAACCCCCAAAACCTTGACTAA 60.053 43.478 0.00 0.00 34.14 2.24
2634 3007 3.238788 ACCCCCAAAACCTTGACTAAG 57.761 47.619 0.00 0.00 34.14 2.18
2635 3008 2.516702 ACCCCCAAAACCTTGACTAAGT 59.483 45.455 0.00 0.00 34.14 2.24
2636 3009 3.052414 ACCCCCAAAACCTTGACTAAGTT 60.052 43.478 0.00 0.00 34.14 2.66
2637 3010 3.964688 CCCCCAAAACCTTGACTAAGTTT 59.035 43.478 0.00 0.00 34.14 2.66
2638 3011 4.202212 CCCCCAAAACCTTGACTAAGTTTG 60.202 45.833 0.00 0.00 34.14 2.93
2639 3012 4.404394 CCCCAAAACCTTGACTAAGTTTGT 59.596 41.667 0.00 0.00 32.34 2.83
2640 3013 5.348164 CCCAAAACCTTGACTAAGTTTGTG 58.652 41.667 0.00 0.00 32.34 3.33
2641 3014 5.126384 CCCAAAACCTTGACTAAGTTTGTGA 59.874 40.000 0.00 0.00 32.34 3.58
2642 3015 6.350612 CCCAAAACCTTGACTAAGTTTGTGAA 60.351 38.462 0.00 0.00 32.34 3.18
2643 3016 6.751888 CCAAAACCTTGACTAAGTTTGTGAAG 59.248 38.462 9.11 9.11 32.34 3.02
2648 3021 8.117813 ACCTTGACTAAGTTTGTGAAGAAAAA 57.882 30.769 15.81 0.00 31.87 1.94
2747 3120 8.271458 TGCATGTATGAAAAGAGGGAGTAATAA 58.729 33.333 0.00 0.00 0.00 1.40
2781 3171 6.744537 GCAAGTATGTGCACAATCTAAAGAAG 59.255 38.462 25.72 7.46 44.29 2.85
2782 3172 6.428385 AGTATGTGCACAATCTAAAGAAGC 57.572 37.500 25.72 0.00 0.00 3.86
2883 3278 9.148104 GAGACTACGACCAAAACTAAATTACAT 57.852 33.333 0.00 0.00 0.00 2.29
2905 3300 1.412079 TTGCTGGCACAAGGAACAAT 58.588 45.000 0.00 0.00 38.70 2.71
2906 3301 2.284754 TGCTGGCACAAGGAACAATA 57.715 45.000 0.00 0.00 38.70 1.90
2907 3302 2.591923 TGCTGGCACAAGGAACAATAA 58.408 42.857 0.00 0.00 38.70 1.40
2908 3303 3.164268 TGCTGGCACAAGGAACAATAAT 58.836 40.909 0.00 0.00 38.70 1.28
2909 3304 3.577848 TGCTGGCACAAGGAACAATAATT 59.422 39.130 0.00 0.00 38.70 1.40
2910 3305 4.769488 TGCTGGCACAAGGAACAATAATTA 59.231 37.500 0.00 0.00 38.70 1.40
2911 3306 5.105797 TGCTGGCACAAGGAACAATAATTAG 60.106 40.000 0.00 0.00 38.70 1.73
2912 3307 5.105756 GCTGGCACAAGGAACAATAATTAGT 60.106 40.000 0.00 0.00 38.70 2.24
2913 3308 6.094881 GCTGGCACAAGGAACAATAATTAGTA 59.905 38.462 0.00 0.00 38.70 1.82
2914 3309 7.362574 GCTGGCACAAGGAACAATAATTAGTAA 60.363 37.037 0.00 0.00 38.70 2.24
2915 3310 8.050778 TGGCACAAGGAACAATAATTAGTAAG 57.949 34.615 0.00 0.00 31.92 2.34
2916 3311 7.668052 TGGCACAAGGAACAATAATTAGTAAGT 59.332 33.333 0.00 0.00 31.92 2.24
2917 3312 8.182227 GGCACAAGGAACAATAATTAGTAAGTC 58.818 37.037 0.00 0.00 0.00 3.01
2918 3313 8.726988 GCACAAGGAACAATAATTAGTAAGTCA 58.273 33.333 0.00 0.00 0.00 3.41
2954 3349 5.352643 AACAATTAGTAAGTCACAACCGC 57.647 39.130 0.00 0.00 0.00 5.68
2955 3350 4.638304 ACAATTAGTAAGTCACAACCGCT 58.362 39.130 0.00 0.00 0.00 5.52
2956 3351 5.786311 ACAATTAGTAAGTCACAACCGCTA 58.214 37.500 0.00 0.00 0.00 4.26
2957 3352 5.636543 ACAATTAGTAAGTCACAACCGCTAC 59.363 40.000 0.00 0.00 0.00 3.58
2958 3353 2.738013 AGTAAGTCACAACCGCTACC 57.262 50.000 0.00 0.00 0.00 3.18
2959 3354 1.274447 AGTAAGTCACAACCGCTACCC 59.726 52.381 0.00 0.00 0.00 3.69
2960 3355 0.244450 TAAGTCACAACCGCTACCCG 59.756 55.000 0.00 0.00 0.00 5.28
2970 3365 3.764658 CGCTACCCGGGTTTATGAA 57.235 52.632 35.42 12.12 0.00 2.57
2971 3366 2.249844 CGCTACCCGGGTTTATGAAT 57.750 50.000 35.42 6.27 0.00 2.57
2972 3367 2.567985 CGCTACCCGGGTTTATGAATT 58.432 47.619 35.42 5.37 0.00 2.17
2973 3368 2.546789 CGCTACCCGGGTTTATGAATTC 59.453 50.000 35.42 9.29 0.00 2.17
2974 3369 3.743269 CGCTACCCGGGTTTATGAATTCT 60.743 47.826 35.42 3.82 0.00 2.40
2975 3370 3.564225 GCTACCCGGGTTTATGAATTCTG 59.436 47.826 35.42 1.38 0.00 3.02
2976 3371 4.685030 GCTACCCGGGTTTATGAATTCTGA 60.685 45.833 35.42 7.71 0.00 3.27
2977 3372 4.519906 ACCCGGGTTTATGAATTCTGAT 57.480 40.909 24.16 0.00 0.00 2.90
2978 3373 4.461198 ACCCGGGTTTATGAATTCTGATC 58.539 43.478 24.16 0.00 0.00 2.92
2979 3374 4.166144 ACCCGGGTTTATGAATTCTGATCT 59.834 41.667 24.16 0.00 0.00 2.75
2980 3375 5.133221 CCCGGGTTTATGAATTCTGATCTT 58.867 41.667 14.18 0.00 0.00 2.40
2981 3376 5.009010 CCCGGGTTTATGAATTCTGATCTTG 59.991 44.000 14.18 0.00 0.00 3.02
2982 3377 5.822519 CCGGGTTTATGAATTCTGATCTTGA 59.177 40.000 7.05 0.00 0.00 3.02
2983 3378 6.238484 CCGGGTTTATGAATTCTGATCTTGAC 60.238 42.308 7.05 0.00 0.00 3.18
2984 3379 6.316140 CGGGTTTATGAATTCTGATCTTGACA 59.684 38.462 7.05 0.00 0.00 3.58
2985 3380 7.148255 CGGGTTTATGAATTCTGATCTTGACAA 60.148 37.037 7.05 0.00 0.00 3.18
2986 3381 7.970614 GGGTTTATGAATTCTGATCTTGACAAC 59.029 37.037 7.05 0.00 0.00 3.32
2987 3382 7.693951 GGTTTATGAATTCTGATCTTGACAACG 59.306 37.037 7.05 0.00 0.00 4.10
2988 3383 4.668576 TGAATTCTGATCTTGACAACGC 57.331 40.909 7.05 0.00 0.00 4.84
2989 3384 4.318332 TGAATTCTGATCTTGACAACGCT 58.682 39.130 7.05 0.00 0.00 5.07
2990 3385 4.152938 TGAATTCTGATCTTGACAACGCTG 59.847 41.667 7.05 0.00 0.00 5.18
2991 3386 1.432514 TCTGATCTTGACAACGCTGC 58.567 50.000 0.00 0.00 0.00 5.25
2992 3387 1.150827 CTGATCTTGACAACGCTGCA 58.849 50.000 0.00 0.00 0.00 4.41
2993 3388 0.867746 TGATCTTGACAACGCTGCAC 59.132 50.000 0.00 0.00 0.00 4.57
2994 3389 0.867746 GATCTTGACAACGCTGCACA 59.132 50.000 0.00 0.00 0.00 4.57
2995 3390 1.466167 GATCTTGACAACGCTGCACAT 59.534 47.619 0.00 0.00 0.00 3.21
2996 3391 2.162319 TCTTGACAACGCTGCACATA 57.838 45.000 0.00 0.00 0.00 2.29
2997 3392 2.698803 TCTTGACAACGCTGCACATAT 58.301 42.857 0.00 0.00 0.00 1.78
2998 3393 3.855858 TCTTGACAACGCTGCACATATA 58.144 40.909 0.00 0.00 0.00 0.86
2999 3394 4.441792 TCTTGACAACGCTGCACATATAT 58.558 39.130 0.00 0.00 0.00 0.86
3000 3395 4.270808 TCTTGACAACGCTGCACATATATG 59.729 41.667 11.29 11.29 0.00 1.78
3001 3396 3.530535 TGACAACGCTGCACATATATGT 58.469 40.909 12.75 12.75 42.84 2.29
3002 3397 3.938334 TGACAACGCTGCACATATATGTT 59.062 39.130 15.85 0.00 39.39 2.71
3003 3398 4.394610 TGACAACGCTGCACATATATGTTT 59.605 37.500 15.85 4.16 39.39 2.83
3004 3399 4.908736 ACAACGCTGCACATATATGTTTC 58.091 39.130 15.85 11.02 39.39 2.78
3005 3400 4.394610 ACAACGCTGCACATATATGTTTCA 59.605 37.500 15.85 14.61 39.39 2.69
3006 3401 4.536364 ACGCTGCACATATATGTTTCAC 57.464 40.909 15.85 6.78 39.39 3.18
3007 3402 4.191544 ACGCTGCACATATATGTTTCACT 58.808 39.130 15.85 0.00 39.39 3.41
3008 3403 5.356426 ACGCTGCACATATATGTTTCACTA 58.644 37.500 15.85 0.00 39.39 2.74
3009 3404 5.463392 ACGCTGCACATATATGTTTCACTAG 59.537 40.000 15.85 8.87 39.39 2.57
3010 3405 5.463392 CGCTGCACATATATGTTTCACTAGT 59.537 40.000 15.85 0.00 39.39 2.57
3011 3406 6.346120 CGCTGCACATATATGTTTCACTAGTC 60.346 42.308 15.85 1.38 39.39 2.59
3012 3407 6.479990 GCTGCACATATATGTTTCACTAGTCA 59.520 38.462 15.85 5.26 39.39 3.41
3013 3408 7.011389 GCTGCACATATATGTTTCACTAGTCAA 59.989 37.037 15.85 0.00 39.39 3.18
3014 3409 8.785329 TGCACATATATGTTTCACTAGTCAAA 57.215 30.769 15.85 0.00 39.39 2.69
3015 3410 9.394767 TGCACATATATGTTTCACTAGTCAAAT 57.605 29.630 15.85 0.00 39.39 2.32
3024 3419 8.974060 TGTTTCACTAGTCAAATTAAAGACCT 57.026 30.769 0.00 0.00 35.38 3.85
3039 3434 7.926674 TTAAAGACCTAAAAATTAGACCCGG 57.073 36.000 0.00 0.00 0.00 5.73
3040 3435 5.767277 AAGACCTAAAAATTAGACCCGGA 57.233 39.130 0.73 0.00 0.00 5.14
3041 3436 5.095145 AGACCTAAAAATTAGACCCGGAC 57.905 43.478 0.73 0.00 0.00 4.79
3042 3437 4.080695 AGACCTAAAAATTAGACCCGGACC 60.081 45.833 0.73 0.00 0.00 4.46
3043 3438 3.588396 ACCTAAAAATTAGACCCGGACCA 59.412 43.478 0.73 0.00 0.00 4.02
3044 3439 4.043184 ACCTAAAAATTAGACCCGGACCAA 59.957 41.667 0.73 0.00 0.00 3.67
3045 3440 5.011586 CCTAAAAATTAGACCCGGACCAAA 58.988 41.667 0.73 0.00 0.00 3.28
3046 3441 5.477637 CCTAAAAATTAGACCCGGACCAAAA 59.522 40.000 0.73 0.00 0.00 2.44
3047 3442 6.153851 CCTAAAAATTAGACCCGGACCAAAAT 59.846 38.462 0.73 0.00 0.00 1.82
3048 3443 7.339976 CCTAAAAATTAGACCCGGACCAAAATA 59.660 37.037 0.73 0.00 0.00 1.40
3049 3444 6.519679 AAAATTAGACCCGGACCAAAATAC 57.480 37.500 0.73 0.00 0.00 1.89
3050 3445 4.847990 ATTAGACCCGGACCAAAATACA 57.152 40.909 0.73 0.00 0.00 2.29
3051 3446 4.637387 TTAGACCCGGACCAAAATACAA 57.363 40.909 0.73 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.525629 AGGATTGTCTAATTAGGGTTGATCG 58.474 40.000 12.54 0.00 0.00 3.69
47 48 3.383761 CAAAGGACTGGTGTGCAATTTC 58.616 45.455 0.00 0.00 36.96 2.17
53 54 1.398692 TTTCCAAAGGACTGGTGTGC 58.601 50.000 0.00 0.00 37.74 4.57
54 55 4.099266 TCAAATTTCCAAAGGACTGGTGTG 59.901 41.667 0.00 0.00 37.74 3.82
68 69 5.579119 ACAAGGAAAACAACGTCAAATTTCC 59.421 36.000 19.38 19.38 45.96 3.13
69 70 6.465978 CACAAGGAAAACAACGTCAAATTTC 58.534 36.000 0.00 0.00 0.00 2.17
73 74 3.246619 GCACAAGGAAAACAACGTCAAA 58.753 40.909 0.00 0.00 0.00 2.69
91 92 2.280119 TGTCGCCAGTGAGTGCAC 60.280 61.111 9.40 9.40 45.49 4.57
159 160 3.430895 CGAAATGTGCTTGGTACTACGTT 59.569 43.478 0.00 0.00 0.00 3.99
162 163 3.062234 GCTCGAAATGTGCTTGGTACTAC 59.938 47.826 0.00 0.00 34.28 2.73
163 164 3.056107 AGCTCGAAATGTGCTTGGTACTA 60.056 43.478 0.00 0.00 44.69 1.82
164 165 2.076863 GCTCGAAATGTGCTTGGTACT 58.923 47.619 0.00 0.00 34.28 2.73
183 184 1.556911 TCAGATGGTCTCTTTCCCAGC 59.443 52.381 0.00 0.00 37.40 4.85
199 200 6.620877 AGTACCAACATATCCTTGTTCAGA 57.379 37.500 0.00 0.00 37.73 3.27
201 202 7.490657 AGTAGTACCAACATATCCTTGTTCA 57.509 36.000 0.00 0.00 37.73 3.18
218 219 3.629142 ACCTGGGATGCAAAGTAGTAC 57.371 47.619 0.00 0.00 0.00 2.73
219 220 3.453353 GGTACCTGGGATGCAAAGTAGTA 59.547 47.826 4.06 0.00 0.00 1.82
220 221 2.238898 GGTACCTGGGATGCAAAGTAGT 59.761 50.000 4.06 0.00 0.00 2.73
221 222 2.238646 TGGTACCTGGGATGCAAAGTAG 59.761 50.000 14.36 0.00 0.00 2.57
248 249 4.165180 TCCAAAATATGACCTGATTCCGGA 59.835 41.667 0.00 0.00 0.00 5.14
250 251 5.368145 TCTCCAAAATATGACCTGATTCCG 58.632 41.667 0.00 0.00 0.00 4.30
269 271 6.691508 AGCCTGAAAACAATGTAAATTCTCC 58.308 36.000 7.61 0.00 0.00 3.71
279 281 2.061028 GCGGAAAGCCTGAAAACAATG 58.939 47.619 0.00 0.00 40.81 2.82
280 282 2.438868 GCGGAAAGCCTGAAAACAAT 57.561 45.000 0.00 0.00 40.81 2.71
322 329 7.942341 AGAGGGAGTACATTTTTGTGACAAATA 59.058 33.333 11.97 7.63 0.00 1.40
323 330 6.777580 AGAGGGAGTACATTTTTGTGACAAAT 59.222 34.615 11.97 0.00 0.00 2.32
324 331 6.039270 CAGAGGGAGTACATTTTTGTGACAAA 59.961 38.462 6.66 6.66 0.00 2.83
330 337 5.941788 AGAACAGAGGGAGTACATTTTTGT 58.058 37.500 0.00 0.00 0.00 2.83
340 347 9.495382 AAGACTTATATTTAGAACAGAGGGAGT 57.505 33.333 0.00 0.00 0.00 3.85
374 381 9.772973 TGCTCCGTATGTAGTTTATAATGAAAT 57.227 29.630 0.00 0.00 0.00 2.17
375 382 9.602568 TTGCTCCGTATGTAGTTTATAATGAAA 57.397 29.630 0.00 0.00 0.00 2.69
376 383 9.602568 TTTGCTCCGTATGTAGTTTATAATGAA 57.397 29.630 0.00 0.00 0.00 2.57
377 384 9.602568 TTTTGCTCCGTATGTAGTTTATAATGA 57.397 29.630 0.00 0.00 0.00 2.57
382 389 9.609346 ACTTATTTTGCTCCGTATGTAGTTTAT 57.391 29.630 0.00 0.00 0.00 1.40
384 391 7.916914 ACTTATTTTGCTCCGTATGTAGTTT 57.083 32.000 0.00 0.00 0.00 2.66
385 392 9.439500 TTTACTTATTTTGCTCCGTATGTAGTT 57.561 29.630 0.00 0.00 0.00 2.24
386 393 9.609346 ATTTACTTATTTTGCTCCGTATGTAGT 57.391 29.630 0.00 0.00 0.00 2.73
388 395 9.826574 AGATTTACTTATTTTGCTCCGTATGTA 57.173 29.630 0.00 0.00 0.00 2.29
389 396 8.732746 AGATTTACTTATTTTGCTCCGTATGT 57.267 30.769 0.00 0.00 0.00 2.29
391 398 9.826574 TGTAGATTTACTTATTTTGCTCCGTAT 57.173 29.630 0.00 0.00 0.00 3.06
392 399 9.826574 ATGTAGATTTACTTATTTTGCTCCGTA 57.173 29.630 0.00 0.00 0.00 4.02
393 400 8.732746 ATGTAGATTTACTTATTTTGCTCCGT 57.267 30.769 0.00 0.00 0.00 4.69
394 401 9.651718 GAATGTAGATTTACTTATTTTGCTCCG 57.348 33.333 0.00 0.00 0.00 4.63
434 441 8.570488 CCACTACAAACTACATACGGATGTATA 58.430 37.037 20.64 9.08 45.42 1.47
435 442 7.286087 TCCACTACAAACTACATACGGATGTAT 59.714 37.037 20.64 8.38 45.42 2.29
436 443 6.602803 TCCACTACAAACTACATACGGATGTA 59.397 38.462 19.32 19.32 44.77 2.29
438 445 5.898174 TCCACTACAAACTACATACGGATG 58.102 41.667 5.94 5.94 39.16 3.51
439 446 6.534475 TTCCACTACAAACTACATACGGAT 57.466 37.500 0.00 0.00 0.00 4.18
440 447 5.981088 TTCCACTACAAACTACATACGGA 57.019 39.130 0.00 0.00 0.00 4.69
441 448 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
442 449 8.475331 AAAGATTCCACTACAAACTACATACG 57.525 34.615 0.00 0.00 0.00 3.06
466 473 9.558396 TCCGTTCCTAAATGTAAGTCTTTTTAA 57.442 29.630 0.00 0.00 0.00 1.52
467 474 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
468 475 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
469 476 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
470 477 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
471 478 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
472 479 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
473 480 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
474 481 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
475 482 4.404715 TCTCCCTCCGTTCCTAAATGTAAG 59.595 45.833 0.00 0.00 0.00 2.34
476 483 4.355549 TCTCCCTCCGTTCCTAAATGTAA 58.644 43.478 0.00 0.00 0.00 2.41
477 484 3.985127 TCTCCCTCCGTTCCTAAATGTA 58.015 45.455 0.00 0.00 0.00 2.29
478 485 2.829023 TCTCCCTCCGTTCCTAAATGT 58.171 47.619 0.00 0.00 0.00 2.71
479 486 3.906720 TTCTCCCTCCGTTCCTAAATG 57.093 47.619 0.00 0.00 0.00 2.32
480 487 3.780850 ACATTCTCCCTCCGTTCCTAAAT 59.219 43.478 0.00 0.00 0.00 1.40
481 488 3.178865 ACATTCTCCCTCCGTTCCTAAA 58.821 45.455 0.00 0.00 0.00 1.85
482 489 2.829023 ACATTCTCCCTCCGTTCCTAA 58.171 47.619 0.00 0.00 0.00 2.69
483 490 2.544844 ACATTCTCCCTCCGTTCCTA 57.455 50.000 0.00 0.00 0.00 2.94
484 491 2.108970 GTACATTCTCCCTCCGTTCCT 58.891 52.381 0.00 0.00 0.00 3.36
485 492 1.138464 GGTACATTCTCCCTCCGTTCC 59.862 57.143 0.00 0.00 0.00 3.62
486 493 2.108970 AGGTACATTCTCCCTCCGTTC 58.891 52.381 0.00 0.00 0.00 3.95
487 494 2.249309 AGGTACATTCTCCCTCCGTT 57.751 50.000 0.00 0.00 0.00 4.44
488 495 2.512896 TCTAGGTACATTCTCCCTCCGT 59.487 50.000 0.00 0.00 0.00 4.69
489 496 2.885894 GTCTAGGTACATTCTCCCTCCG 59.114 54.545 0.00 0.00 0.00 4.63
490 497 3.912248 TGTCTAGGTACATTCTCCCTCC 58.088 50.000 0.00 0.00 0.00 4.30
491 498 7.784470 AATATGTCTAGGTACATTCTCCCTC 57.216 40.000 2.67 0.00 40.52 4.30
492 499 8.568617 AAAATATGTCTAGGTACATTCTCCCT 57.431 34.615 2.67 0.00 40.52 4.20
493 500 9.930693 CTAAAATATGTCTAGGTACATTCTCCC 57.069 37.037 2.67 0.00 40.52 4.30
504 511 7.867909 TGCATCTCGAACTAAAATATGTCTAGG 59.132 37.037 0.00 0.00 0.00 3.02
518 525 6.978659 TCGTAAAAATAGATGCATCTCGAACT 59.021 34.615 31.92 17.05 38.32 3.01
519 526 7.058005 GTCGTAAAAATAGATGCATCTCGAAC 58.942 38.462 31.92 19.91 38.32 3.95
520 527 6.754675 TGTCGTAAAAATAGATGCATCTCGAA 59.245 34.615 31.92 16.12 38.32 3.71
522 529 6.510746 TGTCGTAAAAATAGATGCATCTCG 57.489 37.500 31.92 24.93 38.32 4.04
523 530 7.910304 ACTTGTCGTAAAAATAGATGCATCTC 58.090 34.615 31.92 14.99 38.32 2.75
524 531 7.849804 ACTTGTCGTAAAAATAGATGCATCT 57.150 32.000 30.85 30.85 40.86 2.90
539 546 9.358406 TCCCTCTATCATAAATTACTTGTCGTA 57.642 33.333 0.00 0.00 0.00 3.43
540 547 8.246430 TCCCTCTATCATAAATTACTTGTCGT 57.754 34.615 0.00 0.00 0.00 4.34
558 565 9.074715 AGTGATATTCAGGATATACTCCCTCTA 57.925 37.037 0.00 0.00 46.27 2.43
559 566 7.949696 AGTGATATTCAGGATATACTCCCTCT 58.050 38.462 0.00 0.00 46.27 3.69
565 572 8.964533 AACTGGAGTGATATTCAGGATATACT 57.035 34.615 0.00 0.00 31.00 2.12
645 652 7.603784 GGATACTAGTGGAGTAGTAGCTTAGTC 59.396 44.444 5.39 0.00 43.99 2.59
646 653 7.452562 GGATACTAGTGGAGTAGTAGCTTAGT 58.547 42.308 5.39 0.00 43.99 2.24
795 802 0.307760 GTTTGCACGTCCAGGTTCAG 59.692 55.000 0.00 0.00 0.00 3.02
828 835 0.813184 TTCGGGTAGGTGCGTCTAAG 59.187 55.000 0.00 0.00 0.00 2.18
877 884 4.251268 GTTTTTGGAGTAGCGTGTATCCT 58.749 43.478 0.00 0.00 32.79 3.24
878 885 3.373130 GGTTTTTGGAGTAGCGTGTATCC 59.627 47.826 0.00 0.00 0.00 2.59
909 916 1.028905 TCGCCACCAGTTTTCCAAAG 58.971 50.000 0.00 0.00 0.00 2.77
951 958 2.989840 CGTCGGAATAAGCATGGAGATC 59.010 50.000 0.00 0.00 0.00 2.75
1014 1021 2.423577 GTGGCCTTCTTGTACGATGTT 58.576 47.619 3.32 0.00 0.00 2.71
1017 1024 0.108329 CCGTGGCCTTCTTGTACGAT 60.108 55.000 10.77 0.00 36.94 3.73
1352 1359 2.202492 CGACGAGCTTCCTGACCG 60.202 66.667 0.00 0.00 0.00 4.79
1386 1393 2.107141 CCGGCATCGAACCCTCTC 59.893 66.667 0.00 0.00 39.00 3.20
1479 1489 7.840342 AAATGTCAATTTGTGTTGCTTAACA 57.160 28.000 0.00 0.00 34.63 2.41
1480 1490 8.997960 CAAAAATGTCAATTTGTGTTGCTTAAC 58.002 29.630 0.00 0.00 36.58 2.01
1489 1499 6.893995 GTCGACAACAAAAATGTCAATTTGTG 59.106 34.615 11.55 13.48 46.09 3.33
1491 1501 6.112990 CGTCGACAACAAAAATGTCAATTTG 58.887 36.000 17.16 11.07 45.90 2.32
1492 1502 5.276161 GCGTCGACAACAAAAATGTCAATTT 60.276 36.000 17.16 0.00 45.90 1.82
1493 1503 4.206200 GCGTCGACAACAAAAATGTCAATT 59.794 37.500 17.16 0.00 45.90 2.32
1494 1504 3.728718 GCGTCGACAACAAAAATGTCAAT 59.271 39.130 17.16 0.00 45.90 2.57
1608 1618 2.099062 GACGATGTACCGCGACGT 59.901 61.111 8.23 9.34 39.82 4.34
1613 1623 1.298190 GACCTCGACGATGTACCGC 60.298 63.158 5.73 0.00 0.00 5.68
2025 2035 1.220206 CTCTGAACATCAGCGGCCT 59.780 57.895 0.00 0.00 43.95 5.19
2029 2039 1.081892 CAACCCTCTGAACATCAGCG 58.918 55.000 2.48 0.00 43.95 5.18
2058 2068 1.405463 CATCAATGCATGCAGAGCAGT 59.595 47.619 26.69 15.30 46.36 4.40
2062 2072 1.669265 ACGTCATCAATGCATGCAGAG 59.331 47.619 26.69 19.83 0.00 3.35
2063 2073 1.399089 CACGTCATCAATGCATGCAGA 59.601 47.619 26.69 18.75 0.00 4.26
2072 2082 1.134699 AGCATCGGACACGTCATCAAT 60.135 47.619 0.00 0.00 41.85 2.57
2165 2178 8.765219 CCATCCACAAGAAAATAAGATACGTAG 58.235 37.037 0.08 0.00 0.00 3.51
2192 2208 1.930914 AGGAACCCTACAGCCTAGAGA 59.069 52.381 0.00 0.00 28.47 3.10
2193 2209 2.035632 CAGGAACCCTACAGCCTAGAG 58.964 57.143 0.00 0.00 29.64 2.43
2195 2211 0.466124 GCAGGAACCCTACAGCCTAG 59.534 60.000 0.00 0.00 29.64 3.02
2211 2227 2.031516 CGCAACTCCTGACCAGCAG 61.032 63.158 0.00 0.00 44.49 4.24
2223 2239 2.543777 ACATACACTTCCACGCAACT 57.456 45.000 0.00 0.00 0.00 3.16
2317 2333 7.560991 TGGAACGGAGGAAGTAGTATTTACATA 59.439 37.037 0.00 0.00 0.00 2.29
2332 2348 2.569853 ACACACATTATGGAACGGAGGA 59.430 45.455 0.00 0.00 0.00 3.71
2333 2349 2.936498 GACACACATTATGGAACGGAGG 59.064 50.000 0.00 0.00 0.00 4.30
2343 2359 1.479323 ACGCTACCGGACACACATTAT 59.521 47.619 9.46 0.00 39.22 1.28
2344 2360 0.889994 ACGCTACCGGACACACATTA 59.110 50.000 9.46 0.00 39.22 1.90
2354 2727 2.104331 CTGCCACTACGCTACCGG 59.896 66.667 0.00 0.00 39.22 5.28
2355 2728 1.735376 ATCCTGCCACTACGCTACCG 61.735 60.000 0.00 0.00 41.14 4.02
2387 2760 7.741785 ACCAATATACTCCATATTTTCACGGA 58.258 34.615 0.00 0.00 37.67 4.69
2389 2762 9.273016 AGAACCAATATACTCCATATTTTCACG 57.727 33.333 0.00 0.00 37.67 4.35
2396 2769 8.763601 GGCTAGAAGAACCAATATACTCCATAT 58.236 37.037 0.00 0.00 0.00 1.78
2397 2770 7.180408 GGGCTAGAAGAACCAATATACTCCATA 59.820 40.741 0.00 0.00 0.00 2.74
2398 2771 6.013293 GGGCTAGAAGAACCAATATACTCCAT 60.013 42.308 0.00 0.00 0.00 3.41
2399 2772 5.307196 GGGCTAGAAGAACCAATATACTCCA 59.693 44.000 0.00 0.00 0.00 3.86
2400 2773 5.544562 AGGGCTAGAAGAACCAATATACTCC 59.455 44.000 0.00 0.00 0.00 3.85
2401 2774 6.673839 AGGGCTAGAAGAACCAATATACTC 57.326 41.667 0.00 0.00 0.00 2.59
2402 2775 6.387220 ACAAGGGCTAGAAGAACCAATATACT 59.613 38.462 0.00 0.00 0.00 2.12
2403 2776 6.483640 CACAAGGGCTAGAAGAACCAATATAC 59.516 42.308 0.00 0.00 0.00 1.47
2424 2797 6.151985 ACAAGTGTACCAAAAATCTCACACAA 59.848 34.615 5.57 0.00 38.93 3.33
2436 2809 4.771903 TGTCAGCTTACAAGTGTACCAAA 58.228 39.130 0.00 0.00 0.00 3.28
2493 2866 6.461509 GGGTCAATGAAAGCCATAGTTATTGG 60.462 42.308 0.00 0.00 34.45 3.16
2494 2867 6.096705 TGGGTCAATGAAAGCCATAGTTATTG 59.903 38.462 0.00 0.00 39.29 1.90
2495 2868 6.096846 GTGGGTCAATGAAAGCCATAGTTATT 59.903 38.462 0.00 0.00 45.35 1.40
2502 2875 2.173519 CAGTGGGTCAATGAAAGCCAT 58.826 47.619 0.00 0.00 45.35 4.40
2530 2903 5.619220 GGAGATATCATTCAGTTTCCTGCT 58.381 41.667 5.32 0.00 38.66 4.24
2534 2907 4.450419 CAGCGGAGATATCATTCAGTTTCC 59.550 45.833 5.32 0.00 0.00 3.13
2543 2916 3.482156 AACTTGCAGCGGAGATATCAT 57.518 42.857 5.32 0.00 0.00 2.45
2553 2926 0.247736 AGAGGGAGTAACTTGCAGCG 59.752 55.000 0.00 0.00 0.00 5.18
2554 2927 1.002544 ACAGAGGGAGTAACTTGCAGC 59.997 52.381 0.00 0.00 0.00 5.25
2556 2929 3.857157 AAACAGAGGGAGTAACTTGCA 57.143 42.857 0.00 0.00 0.00 4.08
2615 2988 3.238788 ACTTAGTCAAGGTTTTGGGGG 57.761 47.619 0.00 0.00 35.97 5.40
2618 2991 6.202516 TCACAAACTTAGTCAAGGTTTTGG 57.797 37.500 2.49 0.00 38.59 3.28
2621 2994 7.696992 TTCTTCACAAACTTAGTCAAGGTTT 57.303 32.000 0.00 0.00 38.59 3.27
2624 2997 8.026607 TGTTTTTCTTCACAAACTTAGTCAAGG 58.973 33.333 0.00 0.00 35.97 3.61
2726 3099 8.890124 GAGGTTATTACTCCCTCTTTTCATAC 57.110 38.462 0.00 0.00 41.31 2.39
2747 3120 1.611673 GCACATACTTGCACTGGAGGT 60.612 52.381 0.00 0.00 42.49 3.85
2756 3129 6.182039 TCTTTAGATTGTGCACATACTTGC 57.818 37.500 22.39 6.68 43.31 4.01
2770 3160 8.811994 AGTTAGACAGAAGAGCTTCTTTAGATT 58.188 33.333 9.92 0.00 46.95 2.40
2858 3250 9.148104 GATGTAATTTAGTTTTGGTCGTAGTCT 57.852 33.333 0.00 0.00 0.00 3.24
2883 3278 1.032014 GTTCCTTGTGCCAGCAAAGA 58.968 50.000 12.91 0.00 0.00 2.52
2929 3324 6.693978 GCGGTTGTGACTTACTAATTGTTTTT 59.306 34.615 0.00 0.00 0.00 1.94
2930 3325 6.038936 AGCGGTTGTGACTTACTAATTGTTTT 59.961 34.615 0.00 0.00 0.00 2.43
2931 3326 5.529800 AGCGGTTGTGACTTACTAATTGTTT 59.470 36.000 0.00 0.00 0.00 2.83
2932 3327 5.061179 AGCGGTTGTGACTTACTAATTGTT 58.939 37.500 0.00 0.00 0.00 2.83
2933 3328 4.638304 AGCGGTTGTGACTTACTAATTGT 58.362 39.130 0.00 0.00 0.00 2.71
2938 3333 2.493278 GGGTAGCGGTTGTGACTTACTA 59.507 50.000 0.00 0.00 0.00 1.82
2948 3343 0.107557 ATAAACCCGGGTAGCGGTTG 60.108 55.000 30.52 0.00 41.58 3.77
2949 3344 0.107557 CATAAACCCGGGTAGCGGTT 60.108 55.000 30.52 19.93 44.35 4.44
2950 3345 0.977108 TCATAAACCCGGGTAGCGGT 60.977 55.000 30.52 8.04 0.00 5.68
2951 3346 0.178533 TTCATAAACCCGGGTAGCGG 59.821 55.000 30.52 17.55 0.00 5.52
2952 3347 2.249844 ATTCATAAACCCGGGTAGCG 57.750 50.000 30.52 16.20 0.00 4.26
2953 3348 3.564225 CAGAATTCATAAACCCGGGTAGC 59.436 47.826 30.52 6.46 0.00 3.58
2954 3349 5.031066 TCAGAATTCATAAACCCGGGTAG 57.969 43.478 30.52 17.49 0.00 3.18
2955 3350 5.368523 AGATCAGAATTCATAAACCCGGGTA 59.631 40.000 30.52 13.83 0.00 3.69
2956 3351 4.166144 AGATCAGAATTCATAAACCCGGGT 59.834 41.667 24.16 24.16 0.00 5.28
2957 3352 4.718961 AGATCAGAATTCATAAACCCGGG 58.281 43.478 22.25 22.25 0.00 5.73
2958 3353 5.822519 TCAAGATCAGAATTCATAAACCCGG 59.177 40.000 8.44 0.00 0.00 5.73
2959 3354 6.316140 TGTCAAGATCAGAATTCATAAACCCG 59.684 38.462 8.44 0.00 0.00 5.28
2960 3355 7.630242 TGTCAAGATCAGAATTCATAAACCC 57.370 36.000 8.44 0.00 0.00 4.11
2961 3356 7.693951 CGTTGTCAAGATCAGAATTCATAAACC 59.306 37.037 8.44 0.00 0.00 3.27
2962 3357 7.217070 GCGTTGTCAAGATCAGAATTCATAAAC 59.783 37.037 8.44 0.00 0.00 2.01
2963 3358 7.119699 AGCGTTGTCAAGATCAGAATTCATAAA 59.880 33.333 8.44 0.00 0.00 1.40
2964 3359 6.595326 AGCGTTGTCAAGATCAGAATTCATAA 59.405 34.615 8.44 0.00 0.00 1.90
2965 3360 6.036408 CAGCGTTGTCAAGATCAGAATTCATA 59.964 38.462 8.44 0.00 0.00 2.15
2966 3361 4.940046 AGCGTTGTCAAGATCAGAATTCAT 59.060 37.500 8.44 0.00 0.00 2.57
2967 3362 4.152938 CAGCGTTGTCAAGATCAGAATTCA 59.847 41.667 8.44 0.00 0.00 2.57
2968 3363 4.645956 CAGCGTTGTCAAGATCAGAATTC 58.354 43.478 0.00 0.00 0.00 2.17
2969 3364 3.120060 GCAGCGTTGTCAAGATCAGAATT 60.120 43.478 0.00 0.00 0.00 2.17
2970 3365 2.417933 GCAGCGTTGTCAAGATCAGAAT 59.582 45.455 0.00 0.00 0.00 2.40
2971 3366 1.800586 GCAGCGTTGTCAAGATCAGAA 59.199 47.619 0.00 0.00 0.00 3.02
2972 3367 1.270252 TGCAGCGTTGTCAAGATCAGA 60.270 47.619 0.00 0.00 0.00 3.27
2973 3368 1.136141 GTGCAGCGTTGTCAAGATCAG 60.136 52.381 0.00 0.00 0.00 2.90
2974 3369 0.867746 GTGCAGCGTTGTCAAGATCA 59.132 50.000 0.00 0.00 0.00 2.92
2975 3370 0.867746 TGTGCAGCGTTGTCAAGATC 59.132 50.000 0.00 0.00 0.00 2.75
2976 3371 1.527034 ATGTGCAGCGTTGTCAAGAT 58.473 45.000 0.00 0.00 0.00 2.40
2977 3372 2.162319 TATGTGCAGCGTTGTCAAGA 57.838 45.000 0.00 0.00 0.00 3.02
2978 3373 4.034394 ACATATATGTGCAGCGTTGTCAAG 59.966 41.667 17.60 0.00 40.03 3.02
2979 3374 3.938334 ACATATATGTGCAGCGTTGTCAA 59.062 39.130 17.60 0.00 40.03 3.18
2980 3375 3.530535 ACATATATGTGCAGCGTTGTCA 58.469 40.909 17.60 1.54 40.03 3.58
2981 3376 4.536364 AACATATATGTGCAGCGTTGTC 57.464 40.909 18.94 0.00 41.61 3.18
2982 3377 4.394610 TGAAACATATATGTGCAGCGTTGT 59.605 37.500 18.94 0.00 41.61 3.32
2983 3378 4.730042 GTGAAACATATATGTGCAGCGTTG 59.270 41.667 18.94 0.00 41.61 4.10
2984 3379 4.635765 AGTGAAACATATATGTGCAGCGTT 59.364 37.500 18.94 8.37 41.61 4.84
2985 3380 4.191544 AGTGAAACATATATGTGCAGCGT 58.808 39.130 18.94 0.00 41.61 5.07
2986 3381 4.801147 AGTGAAACATATATGTGCAGCG 57.199 40.909 18.94 0.00 41.61 5.18
2987 3382 6.479990 TGACTAGTGAAACATATATGTGCAGC 59.520 38.462 18.94 13.35 41.61 5.25
2988 3383 8.424274 TTGACTAGTGAAACATATATGTGCAG 57.576 34.615 18.94 11.53 41.61 4.41
2989 3384 8.785329 TTTGACTAGTGAAACATATATGTGCA 57.215 30.769 18.94 16.30 41.61 4.57
2998 3393 9.574516 AGGTCTTTAATTTGACTAGTGAAACAT 57.425 29.630 9.80 5.10 34.59 2.71
2999 3394 8.974060 AGGTCTTTAATTTGACTAGTGAAACA 57.026 30.769 9.80 0.00 34.59 2.83
3013 3408 8.963725 CCGGGTCTAATTTTTAGGTCTTTAATT 58.036 33.333 0.00 0.00 0.00 1.40
3014 3409 8.330993 TCCGGGTCTAATTTTTAGGTCTTTAAT 58.669 33.333 0.00 0.00 0.00 1.40
3015 3410 7.607607 GTCCGGGTCTAATTTTTAGGTCTTTAA 59.392 37.037 0.00 0.00 0.00 1.52
3016 3411 7.105588 GTCCGGGTCTAATTTTTAGGTCTTTA 58.894 38.462 0.00 0.00 0.00 1.85
3017 3412 5.942236 GTCCGGGTCTAATTTTTAGGTCTTT 59.058 40.000 0.00 0.00 0.00 2.52
3018 3413 5.494724 GTCCGGGTCTAATTTTTAGGTCTT 58.505 41.667 0.00 0.00 0.00 3.01
3019 3414 4.080695 GGTCCGGGTCTAATTTTTAGGTCT 60.081 45.833 0.00 0.00 0.00 3.85
3020 3415 4.194640 GGTCCGGGTCTAATTTTTAGGTC 58.805 47.826 0.00 0.00 0.00 3.85
3021 3416 3.588396 TGGTCCGGGTCTAATTTTTAGGT 59.412 43.478 0.00 0.00 0.00 3.08
3022 3417 4.224991 TGGTCCGGGTCTAATTTTTAGG 57.775 45.455 0.00 0.00 0.00 2.69
3023 3418 6.578163 TTTTGGTCCGGGTCTAATTTTTAG 57.422 37.500 0.00 0.00 0.00 1.85
3024 3419 7.668886 TGTATTTTGGTCCGGGTCTAATTTTTA 59.331 33.333 0.00 0.00 0.00 1.52
3025 3420 6.494146 TGTATTTTGGTCCGGGTCTAATTTTT 59.506 34.615 0.00 0.00 0.00 1.94
3026 3421 6.011481 TGTATTTTGGTCCGGGTCTAATTTT 58.989 36.000 0.00 0.00 0.00 1.82
3027 3422 5.572252 TGTATTTTGGTCCGGGTCTAATTT 58.428 37.500 0.00 0.00 0.00 1.82
3028 3423 5.182169 TGTATTTTGGTCCGGGTCTAATT 57.818 39.130 0.00 0.00 0.00 1.40
3029 3424 4.847990 TGTATTTTGGTCCGGGTCTAAT 57.152 40.909 0.00 0.00 0.00 1.73
3030 3425 4.637387 TTGTATTTTGGTCCGGGTCTAA 57.363 40.909 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.