Multiple sequence alignment - TraesCS6A01G283000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G283000 chr6A 100.000 6381 0 0 1 6381 514319433 514325813 0.000000e+00 11784.0
1 TraesCS6A01G283000 chr6D 93.237 3327 119 39 2264 5541 372359536 372362805 0.000000e+00 4800.0
2 TraesCS6A01G283000 chr6D 89.902 1327 64 28 968 2243 372358249 372359556 0.000000e+00 1644.0
3 TraesCS6A01G283000 chr6D 88.950 543 42 9 5697 6233 372363520 372364050 0.000000e+00 654.0
4 TraesCS6A01G283000 chr1D 90.573 785 66 7 1 783 272387779 272388557 0.000000e+00 1033.0
5 TraesCS6A01G283000 chr2A 90.755 768 63 8 1 765 62206748 62207510 0.000000e+00 1018.0
6 TraesCS6A01G283000 chr2A 91.473 129 11 0 788 916 647751930 647752058 1.830000e-40 178.0
7 TraesCS6A01G283000 chr7D 89.453 768 72 8 1 765 573464028 573463267 0.000000e+00 961.0
8 TraesCS6A01G283000 chr7D 88.802 768 77 8 1 765 350546834 350546073 0.000000e+00 933.0
9 TraesCS6A01G283000 chr7D 83.846 260 30 9 1143 1392 184997674 184997417 2.970000e-58 237.0
10 TraesCS6A01G283000 chr6B 87.358 791 85 15 1 786 46760607 46759827 0.000000e+00 893.0
11 TraesCS6A01G283000 chr6B 91.667 156 12 1 6227 6381 132353584 132353429 1.390000e-51 215.0
12 TraesCS6A01G283000 chr6B 100.000 28 0 0 2244 2271 95578812 95578785 1.200000e-02 52.8
13 TraesCS6A01G283000 chr2B 85.990 778 93 14 1 771 49680470 49681238 0.000000e+00 819.0
14 TraesCS6A01G283000 chr2B 84.536 776 108 12 1 771 49711156 49711924 0.000000e+00 758.0
15 TraesCS6A01G283000 chrUn 84.407 776 109 12 1 771 356787596 356788364 0.000000e+00 752.0
16 TraesCS6A01G283000 chrUn 100.000 28 0 0 2244 2271 306569281 306569254 1.200000e-02 52.8
17 TraesCS6A01G283000 chr4B 82.464 901 99 39 3943 4824 12538295 12537435 0.000000e+00 734.0
18 TraesCS6A01G283000 chr4B 92.105 152 11 1 6231 6381 340851633 340851784 5.010000e-51 213.0
19 TraesCS6A01G283000 chr4D 89.614 337 31 4 431 766 433504388 433504721 5.910000e-115 425.0
20 TraesCS6A01G283000 chr4D 78.936 451 94 1 13 463 53764654 53764205 8.040000e-79 305.0
21 TraesCS6A01G283000 chr7A 82.824 262 35 6 1143 1395 192374512 192374252 6.440000e-55 226.0
22 TraesCS6A01G283000 chr7A 90.566 159 14 1 6224 6381 648211192 648211350 6.480000e-50 209.0
23 TraesCS6A01G283000 chr7B 82.625 259 35 7 1143 1392 154819190 154818933 2.990000e-53 220.0
24 TraesCS6A01G283000 chr7B 93.333 150 8 2 6233 6381 586635025 586635173 2.990000e-53 220.0
25 TraesCS6A01G283000 chr1A 93.333 150 9 1 6233 6381 496854480 496854331 2.990000e-53 220.0
26 TraesCS6A01G283000 chr2D 93.289 149 9 1 6234 6381 241491370 241491222 1.080000e-52 219.0
27 TraesCS6A01G283000 chr2D 92.715 151 10 1 6232 6381 87407362 87407512 3.870000e-52 217.0
28 TraesCS6A01G283000 chr5B 92.208 154 11 1 6229 6381 45271440 45271593 3.870000e-52 217.0
29 TraesCS6A01G283000 chr3B 92.105 152 11 1 6231 6381 112325301 112325150 5.010000e-51 213.0
30 TraesCS6A01G283000 chr3A 91.473 129 11 0 788 916 643281527 643281399 1.830000e-40 178.0
31 TraesCS6A01G283000 chr1B 91.473 129 11 0 788 916 522748675 522748803 1.830000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G283000 chr6A 514319433 514325813 6380 False 11784 11784 100.000000 1 6381 1 chr6A.!!$F1 6380
1 TraesCS6A01G283000 chr6D 372358249 372364050 5801 False 2366 4800 90.696333 968 6233 3 chr6D.!!$F1 5265
2 TraesCS6A01G283000 chr1D 272387779 272388557 778 False 1033 1033 90.573000 1 783 1 chr1D.!!$F1 782
3 TraesCS6A01G283000 chr2A 62206748 62207510 762 False 1018 1018 90.755000 1 765 1 chr2A.!!$F1 764
4 TraesCS6A01G283000 chr7D 573463267 573464028 761 True 961 961 89.453000 1 765 1 chr7D.!!$R3 764
5 TraesCS6A01G283000 chr7D 350546073 350546834 761 True 933 933 88.802000 1 765 1 chr7D.!!$R2 764
6 TraesCS6A01G283000 chr6B 46759827 46760607 780 True 893 893 87.358000 1 786 1 chr6B.!!$R1 785
7 TraesCS6A01G283000 chr2B 49680470 49681238 768 False 819 819 85.990000 1 771 1 chr2B.!!$F1 770
8 TraesCS6A01G283000 chr2B 49711156 49711924 768 False 758 758 84.536000 1 771 1 chr2B.!!$F2 770
9 TraesCS6A01G283000 chrUn 356787596 356788364 768 False 752 752 84.407000 1 771 1 chrUn.!!$F1 770
10 TraesCS6A01G283000 chr4B 12537435 12538295 860 True 734 734 82.464000 3943 4824 1 chr4B.!!$R1 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 610 0.316204 ACCGTTAAGTGACTGTCGGG 59.684 55.0 20.79 9.09 41.82 5.14 F
2267 2322 0.114168 ATGCACCAGGTTGCCCTTTA 59.886 50.0 10.46 0.00 42.25 1.85 F
2268 2323 0.114168 TGCACCAGGTTGCCCTTTAT 59.886 50.0 10.46 0.00 42.25 1.40 F
2269 2324 0.532115 GCACCAGGTTGCCCTTTATG 59.468 55.0 0.00 0.00 39.89 1.90 F
2673 2728 0.622665 AGCAAGGATGTGGGAAGAGG 59.377 55.0 0.00 0.00 0.00 3.69 F
4071 4164 0.764890 TTAGGTCAGCTGCTGTGGTT 59.235 50.0 27.24 14.64 32.61 3.67 F
4918 5030 0.322816 ATCCAAGTGCCTGCGTTCAT 60.323 50.0 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2560 2615 0.102663 GCGTCTAAGGCCACTAGTCC 59.897 60.000 5.01 0.0 0.00 3.85 R
3736 3826 0.895559 CAAGGAAGGACCAACAGGCC 60.896 60.000 0.00 0.0 42.04 5.19 R
3813 3904 1.134965 CCTAGTTCGGTGCTGGAGAAG 60.135 57.143 0.00 0.0 0.00 2.85 R
4140 4233 2.790433 TCTGTTATTTGGACCTGTGGC 58.210 47.619 0.00 0.0 0.00 5.01 R
4186 4280 3.460857 ACACGAGAGGGATATTTGCTC 57.539 47.619 0.00 0.0 38.45 4.26 R
4994 5106 0.107654 CTCCGACTCCCATTGAACCC 60.108 60.000 0.00 0.0 0.00 4.11 R
5791 6480 0.110238 CAATGAACGGTTGCGTCCTG 60.110 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 7.872993 ACTGAAACTGAGATCAAAATTCTACGA 59.127 33.333 0.00 0.00 0.00 3.43
104 106 3.573967 TGGAAAGAATTGGAGAAGTTGCC 59.426 43.478 0.00 0.00 0.00 4.52
136 138 1.771854 TCTACCAGAGGGCACAAACAA 59.228 47.619 0.00 0.00 37.90 2.83
178 180 4.756642 CAGCCAACTCAAGAAACATGTAGA 59.243 41.667 0.00 0.00 0.00 2.59
219 221 0.537143 GCATGTTCCACTGGTCACCA 60.537 55.000 0.00 0.00 0.00 4.17
222 224 0.843309 TGTTCCACTGGTCACCACAT 59.157 50.000 0.00 0.00 0.00 3.21
302 305 1.303317 GACTCCGGTTGGCCAATGT 60.303 57.895 23.66 15.03 34.14 2.71
375 378 3.976015 ACCTTCCTCAACAAAACCTTCA 58.024 40.909 0.00 0.00 0.00 3.02
415 418 1.291877 CTCGAGGACAAGGCGGTTTG 61.292 60.000 3.91 0.00 0.00 2.93
424 427 3.053291 GGCGGTTTGTCATGGCGA 61.053 61.111 0.00 0.00 0.00 5.54
443 446 1.746615 CGACATTGTCAGGCCCTGG 60.747 63.158 11.68 0.00 32.09 4.45
453 456 2.040606 GGCCCTGGACCTAGGACA 59.959 66.667 17.98 13.03 40.42 4.02
496 499 1.166531 GGCTTCAGACAAGCAACGGT 61.167 55.000 8.52 0.00 44.71 4.83
541 544 1.595382 GATCCAACGGCTCGGATGG 60.595 63.158 12.31 12.31 42.21 3.51
542 545 2.311688 GATCCAACGGCTCGGATGGT 62.312 60.000 15.72 8.05 42.21 3.55
572 575 5.731591 CCGATCTCCAGTAGTTTTAAACCT 58.268 41.667 4.01 0.00 0.00 3.50
607 610 0.316204 ACCGTTAAGTGACTGTCGGG 59.684 55.000 20.79 9.09 41.82 5.14
616 619 2.161030 GTGACTGTCGGGAGAGTTACT 58.839 52.381 11.91 0.00 37.92 2.24
757 762 2.357952 GCTCCGATCCCCAAAATTGTAC 59.642 50.000 0.00 0.00 0.00 2.90
766 771 4.586841 TCCCCAAAATTGTACCAGAACAAG 59.413 41.667 0.00 0.00 42.33 3.16
771 776 3.525800 ATTGTACCAGAACAAGCCCTT 57.474 42.857 0.00 0.00 42.33 3.95
783 788 4.373156 ACAAGCCCTTGAATTACTCTGT 57.627 40.909 14.46 0.00 42.93 3.41
786 791 5.598417 ACAAGCCCTTGAATTACTCTGTTTT 59.402 36.000 14.46 0.00 42.93 2.43
787 792 6.775629 ACAAGCCCTTGAATTACTCTGTTTTA 59.224 34.615 14.46 0.00 42.93 1.52
788 793 7.040409 ACAAGCCCTTGAATTACTCTGTTTTAG 60.040 37.037 14.46 0.00 42.93 1.85
789 794 5.946377 AGCCCTTGAATTACTCTGTTTTAGG 59.054 40.000 0.00 0.00 0.00 2.69
790 795 5.393135 GCCCTTGAATTACTCTGTTTTAGGC 60.393 44.000 0.00 0.00 0.00 3.93
791 796 5.125578 CCCTTGAATTACTCTGTTTTAGGCC 59.874 44.000 0.00 0.00 0.00 5.19
792 797 5.946377 CCTTGAATTACTCTGTTTTAGGCCT 59.054 40.000 11.78 11.78 0.00 5.19
793 798 6.434340 CCTTGAATTACTCTGTTTTAGGCCTT 59.566 38.462 12.58 0.00 0.00 4.35
794 799 7.610305 CCTTGAATTACTCTGTTTTAGGCCTTA 59.390 37.037 12.58 0.00 0.00 2.69
795 800 9.178758 CTTGAATTACTCTGTTTTAGGCCTTAT 57.821 33.333 12.58 0.00 0.00 1.73
796 801 9.528489 TTGAATTACTCTGTTTTAGGCCTTATT 57.472 29.630 12.58 0.00 0.00 1.40
797 802 9.174166 TGAATTACTCTGTTTTAGGCCTTATTC 57.826 33.333 12.58 0.00 0.00 1.75
798 803 7.787725 ATTACTCTGTTTTAGGCCTTATTCG 57.212 36.000 12.58 0.00 0.00 3.34
799 804 4.514401 ACTCTGTTTTAGGCCTTATTCGG 58.486 43.478 12.58 5.36 0.00 4.30
800 805 4.019591 ACTCTGTTTTAGGCCTTATTCGGT 60.020 41.667 12.58 0.00 0.00 4.69
801 806 4.913784 TCTGTTTTAGGCCTTATTCGGTT 58.086 39.130 12.58 0.00 0.00 4.44
802 807 6.052405 TCTGTTTTAGGCCTTATTCGGTTA 57.948 37.500 12.58 0.00 0.00 2.85
803 808 5.876460 TCTGTTTTAGGCCTTATTCGGTTAC 59.124 40.000 12.58 0.00 0.00 2.50
804 809 5.558818 TGTTTTAGGCCTTATTCGGTTACA 58.441 37.500 12.58 0.02 0.00 2.41
805 810 5.412286 TGTTTTAGGCCTTATTCGGTTACAC 59.588 40.000 12.58 0.00 0.00 2.90
806 811 2.704464 AGGCCTTATTCGGTTACACC 57.296 50.000 0.00 0.00 34.05 4.16
807 812 2.193993 AGGCCTTATTCGGTTACACCT 58.806 47.619 0.00 0.00 35.66 4.00
808 813 2.169978 AGGCCTTATTCGGTTACACCTC 59.830 50.000 0.00 0.00 35.66 3.85
809 814 2.169978 GGCCTTATTCGGTTACACCTCT 59.830 50.000 0.00 0.00 35.66 3.69
810 815 3.370209 GGCCTTATTCGGTTACACCTCTT 60.370 47.826 0.00 0.00 35.66 2.85
811 816 3.869832 GCCTTATTCGGTTACACCTCTTC 59.130 47.826 0.00 0.00 35.66 2.87
812 817 4.382793 GCCTTATTCGGTTACACCTCTTCT 60.383 45.833 0.00 0.00 35.66 2.85
813 818 5.349809 CCTTATTCGGTTACACCTCTTCTC 58.650 45.833 0.00 0.00 35.66 2.87
814 819 5.105473 CCTTATTCGGTTACACCTCTTCTCA 60.105 44.000 0.00 0.00 35.66 3.27
815 820 4.884668 ATTCGGTTACACCTCTTCTCAA 57.115 40.909 0.00 0.00 35.66 3.02
816 821 3.936372 TCGGTTACACCTCTTCTCAAG 57.064 47.619 0.00 0.00 35.66 3.02
817 822 3.493334 TCGGTTACACCTCTTCTCAAGA 58.507 45.455 0.00 0.00 35.66 3.02
830 835 3.816398 TCTCAAGAGGACTGGAGAAGA 57.184 47.619 0.00 0.00 46.54 2.87
831 836 4.329638 TCTCAAGAGGACTGGAGAAGAT 57.670 45.455 0.00 0.00 46.54 2.40
832 837 4.682563 TCTCAAGAGGACTGGAGAAGATT 58.317 43.478 0.00 0.00 46.54 2.40
833 838 5.090139 TCTCAAGAGGACTGGAGAAGATTT 58.910 41.667 0.00 0.00 46.54 2.17
834 839 5.046735 TCTCAAGAGGACTGGAGAAGATTTG 60.047 44.000 0.00 0.00 46.54 2.32
835 840 4.019860 TCAAGAGGACTGGAGAAGATTTGG 60.020 45.833 0.00 0.00 0.00 3.28
836 841 2.843113 AGAGGACTGGAGAAGATTTGGG 59.157 50.000 0.00 0.00 0.00 4.12
837 842 2.573915 GAGGACTGGAGAAGATTTGGGT 59.426 50.000 0.00 0.00 0.00 4.51
838 843 2.307098 AGGACTGGAGAAGATTTGGGTG 59.693 50.000 0.00 0.00 0.00 4.61
839 844 2.619074 GGACTGGAGAAGATTTGGGTGG 60.619 54.545 0.00 0.00 0.00 4.61
840 845 2.305927 GACTGGAGAAGATTTGGGTGGA 59.694 50.000 0.00 0.00 0.00 4.02
841 846 2.922283 ACTGGAGAAGATTTGGGTGGAT 59.078 45.455 0.00 0.00 0.00 3.41
842 847 3.334881 ACTGGAGAAGATTTGGGTGGATT 59.665 43.478 0.00 0.00 0.00 3.01
843 848 4.202716 ACTGGAGAAGATTTGGGTGGATTT 60.203 41.667 0.00 0.00 0.00 2.17
844 849 4.750941 TGGAGAAGATTTGGGTGGATTTT 58.249 39.130 0.00 0.00 0.00 1.82
845 850 4.527816 TGGAGAAGATTTGGGTGGATTTTG 59.472 41.667 0.00 0.00 0.00 2.44
846 851 4.772100 GGAGAAGATTTGGGTGGATTTTGA 59.228 41.667 0.00 0.00 0.00 2.69
847 852 5.336770 GGAGAAGATTTGGGTGGATTTTGAC 60.337 44.000 0.00 0.00 0.00 3.18
848 853 5.397360 AGAAGATTTGGGTGGATTTTGACT 58.603 37.500 0.00 0.00 0.00 3.41
849 854 5.840693 AGAAGATTTGGGTGGATTTTGACTT 59.159 36.000 0.00 0.00 0.00 3.01
850 855 5.473066 AGATTTGGGTGGATTTTGACTTG 57.527 39.130 0.00 0.00 0.00 3.16
851 856 4.901250 AGATTTGGGTGGATTTTGACTTGT 59.099 37.500 0.00 0.00 0.00 3.16
852 857 6.074648 AGATTTGGGTGGATTTTGACTTGTA 58.925 36.000 0.00 0.00 0.00 2.41
853 858 5.782893 TTTGGGTGGATTTTGACTTGTAG 57.217 39.130 0.00 0.00 0.00 2.74
854 859 4.715534 TGGGTGGATTTTGACTTGTAGA 57.284 40.909 0.00 0.00 0.00 2.59
855 860 5.055265 TGGGTGGATTTTGACTTGTAGAA 57.945 39.130 0.00 0.00 0.00 2.10
856 861 5.070001 TGGGTGGATTTTGACTTGTAGAAG 58.930 41.667 0.00 0.00 35.07 2.85
857 862 5.163141 TGGGTGGATTTTGACTTGTAGAAGA 60.163 40.000 6.63 0.00 32.98 2.87
858 863 5.946377 GGGTGGATTTTGACTTGTAGAAGAT 59.054 40.000 6.63 0.00 32.98 2.40
859 864 6.434340 GGGTGGATTTTGACTTGTAGAAGATT 59.566 38.462 6.63 0.00 32.98 2.40
860 865 7.610305 GGGTGGATTTTGACTTGTAGAAGATTA 59.390 37.037 6.63 0.00 32.98 1.75
861 866 9.178758 GGTGGATTTTGACTTGTAGAAGATTAT 57.821 33.333 6.63 0.00 32.98 1.28
876 881 9.660180 GTAGAAGATTATATCCATCTCAAACCC 57.340 37.037 0.00 0.00 30.19 4.11
877 882 8.517323 AGAAGATTATATCCATCTCAAACCCT 57.483 34.615 0.00 0.00 30.19 4.34
878 883 8.381636 AGAAGATTATATCCATCTCAAACCCTG 58.618 37.037 0.00 0.00 30.19 4.45
879 884 6.479884 AGATTATATCCATCTCAAACCCTGC 58.520 40.000 0.00 0.00 0.00 4.85
880 885 3.515602 ATATCCATCTCAAACCCTGCC 57.484 47.619 0.00 0.00 0.00 4.85
881 886 1.002069 ATCCATCTCAAACCCTGCCA 58.998 50.000 0.00 0.00 0.00 4.92
882 887 0.776810 TCCATCTCAAACCCTGCCAA 59.223 50.000 0.00 0.00 0.00 4.52
883 888 1.146774 TCCATCTCAAACCCTGCCAAA 59.853 47.619 0.00 0.00 0.00 3.28
884 889 1.273327 CCATCTCAAACCCTGCCAAAC 59.727 52.381 0.00 0.00 0.00 2.93
885 890 1.273327 CATCTCAAACCCTGCCAAACC 59.727 52.381 0.00 0.00 0.00 3.27
886 891 0.469144 TCTCAAACCCTGCCAAACCC 60.469 55.000 0.00 0.00 0.00 4.11
887 892 1.458588 TCAAACCCTGCCAAACCCC 60.459 57.895 0.00 0.00 0.00 4.95
888 893 1.459348 CAAACCCTGCCAAACCCCT 60.459 57.895 0.00 0.00 0.00 4.79
889 894 1.152333 AAACCCTGCCAAACCCCTC 60.152 57.895 0.00 0.00 0.00 4.30
890 895 2.673027 AAACCCTGCCAAACCCCTCC 62.673 60.000 0.00 0.00 0.00 4.30
891 896 3.268032 CCCTGCCAAACCCCTCCT 61.268 66.667 0.00 0.00 0.00 3.69
892 897 1.928567 CCCTGCCAAACCCCTCCTA 60.929 63.158 0.00 0.00 0.00 2.94
893 898 1.506028 CCCTGCCAAACCCCTCCTAA 61.506 60.000 0.00 0.00 0.00 2.69
894 899 0.407918 CCTGCCAAACCCCTCCTAAA 59.592 55.000 0.00 0.00 0.00 1.85
895 900 1.007118 CCTGCCAAACCCCTCCTAAAT 59.993 52.381 0.00 0.00 0.00 1.40
896 901 2.379005 CTGCCAAACCCCTCCTAAATC 58.621 52.381 0.00 0.00 0.00 2.17
897 902 1.006639 TGCCAAACCCCTCCTAAATCC 59.993 52.381 0.00 0.00 0.00 3.01
898 903 1.006639 GCCAAACCCCTCCTAAATCCA 59.993 52.381 0.00 0.00 0.00 3.41
899 904 2.359249 GCCAAACCCCTCCTAAATCCAT 60.359 50.000 0.00 0.00 0.00 3.41
900 905 3.299503 CCAAACCCCTCCTAAATCCATG 58.700 50.000 0.00 0.00 0.00 3.66
901 906 3.309848 CCAAACCCCTCCTAAATCCATGT 60.310 47.826 0.00 0.00 0.00 3.21
902 907 3.953542 AACCCCTCCTAAATCCATGTC 57.046 47.619 0.00 0.00 0.00 3.06
903 908 2.858644 ACCCCTCCTAAATCCATGTCA 58.141 47.619 0.00 0.00 0.00 3.58
904 909 3.197983 ACCCCTCCTAAATCCATGTCAA 58.802 45.455 0.00 0.00 0.00 3.18
905 910 3.053619 ACCCCTCCTAAATCCATGTCAAC 60.054 47.826 0.00 0.00 0.00 3.18
906 911 3.555966 CCCTCCTAAATCCATGTCAACC 58.444 50.000 0.00 0.00 0.00 3.77
907 912 3.053693 CCCTCCTAAATCCATGTCAACCA 60.054 47.826 0.00 0.00 0.00 3.67
908 913 4.569653 CCCTCCTAAATCCATGTCAACCAA 60.570 45.833 0.00 0.00 0.00 3.67
909 914 5.016173 CCTCCTAAATCCATGTCAACCAAA 58.984 41.667 0.00 0.00 0.00 3.28
910 915 5.105756 CCTCCTAAATCCATGTCAACCAAAC 60.106 44.000 0.00 0.00 0.00 2.93
911 916 5.389520 TCCTAAATCCATGTCAACCAAACA 58.610 37.500 0.00 0.00 0.00 2.83
912 917 5.835819 TCCTAAATCCATGTCAACCAAACAA 59.164 36.000 0.00 0.00 0.00 2.83
913 918 6.015519 TCCTAAATCCATGTCAACCAAACAAG 60.016 38.462 0.00 0.00 0.00 3.16
914 919 4.605640 AATCCATGTCAACCAAACAAGG 57.394 40.909 0.00 0.00 36.94 3.61
915 920 1.686052 TCCATGTCAACCAAACAAGGC 59.314 47.619 0.00 0.00 35.86 4.35
916 921 1.602668 CCATGTCAACCAAACAAGGCG 60.603 52.381 0.00 0.00 29.70 5.52
917 922 1.066908 CATGTCAACCAAACAAGGCGT 59.933 47.619 0.00 0.00 0.00 5.68
918 923 1.178276 TGTCAACCAAACAAGGCGTT 58.822 45.000 0.00 0.00 40.50 4.84
919 924 2.366533 TGTCAACCAAACAAGGCGTTA 58.633 42.857 0.00 0.00 36.59 3.18
920 925 2.753452 TGTCAACCAAACAAGGCGTTAA 59.247 40.909 0.00 0.00 36.59 2.01
921 926 3.381908 TGTCAACCAAACAAGGCGTTAAT 59.618 39.130 0.00 0.00 36.59 1.40
922 927 3.733727 GTCAACCAAACAAGGCGTTAATG 59.266 43.478 0.00 0.00 36.59 1.90
923 928 3.632604 TCAACCAAACAAGGCGTTAATGA 59.367 39.130 0.00 0.00 36.59 2.57
924 929 4.098044 TCAACCAAACAAGGCGTTAATGAA 59.902 37.500 0.00 0.00 36.59 2.57
925 930 4.657436 ACCAAACAAGGCGTTAATGAAA 57.343 36.364 0.00 0.00 36.59 2.69
926 931 5.208463 ACCAAACAAGGCGTTAATGAAAT 57.792 34.783 0.00 0.00 36.59 2.17
927 932 5.606505 ACCAAACAAGGCGTTAATGAAATT 58.393 33.333 0.00 0.00 41.28 1.82
928 933 5.694458 ACCAAACAAGGCGTTAATGAAATTC 59.306 36.000 0.00 0.00 37.87 2.17
929 934 5.694006 CCAAACAAGGCGTTAATGAAATTCA 59.306 36.000 0.00 0.00 37.87 2.57
930 935 6.128849 CCAAACAAGGCGTTAATGAAATTCAG 60.129 38.462 1.10 0.00 37.87 3.02
931 936 5.957842 ACAAGGCGTTAATGAAATTCAGA 57.042 34.783 1.10 0.00 37.87 3.27
932 937 6.325919 ACAAGGCGTTAATGAAATTCAGAA 57.674 33.333 1.10 0.00 37.87 3.02
933 938 6.924111 ACAAGGCGTTAATGAAATTCAGAAT 58.076 32.000 1.10 0.00 37.87 2.40
934 939 8.050778 ACAAGGCGTTAATGAAATTCAGAATA 57.949 30.769 1.10 0.00 37.87 1.75
935 940 8.184192 ACAAGGCGTTAATGAAATTCAGAATAG 58.816 33.333 1.10 0.00 37.87 1.73
936 941 8.397906 CAAGGCGTTAATGAAATTCAGAATAGA 58.602 33.333 1.10 0.00 37.87 1.98
937 942 8.682936 AGGCGTTAATGAAATTCAGAATAGAT 57.317 30.769 1.10 0.00 37.87 1.98
938 943 8.778358 AGGCGTTAATGAAATTCAGAATAGATC 58.222 33.333 1.10 0.00 37.87 2.75
939 944 7.742089 GGCGTTAATGAAATTCAGAATAGATCG 59.258 37.037 1.10 0.19 37.87 3.69
940 945 7.742089 GCGTTAATGAAATTCAGAATAGATCGG 59.258 37.037 1.10 0.00 37.87 4.18
941 946 8.978539 CGTTAATGAAATTCAGAATAGATCGGA 58.021 33.333 1.10 0.00 37.87 4.55
945 950 9.790344 AATGAAATTCAGAATAGATCGGAGAAT 57.210 29.630 1.10 0.00 43.58 2.40
946 951 9.790344 ATGAAATTCAGAATAGATCGGAGAATT 57.210 29.630 1.10 0.00 43.58 2.17
947 952 9.265901 TGAAATTCAGAATAGATCGGAGAATTC 57.734 33.333 0.00 0.00 43.58 2.17
948 953 8.614469 AAATTCAGAATAGATCGGAGAATTCC 57.386 34.615 0.65 0.00 43.58 3.01
949 954 6.985653 TTCAGAATAGATCGGAGAATTCCT 57.014 37.500 0.65 0.00 43.58 3.36
950 955 6.338214 TCAGAATAGATCGGAGAATTCCTG 57.662 41.667 0.65 0.00 43.58 3.86
951 956 5.244851 TCAGAATAGATCGGAGAATTCCTGG 59.755 44.000 0.65 0.00 43.58 4.45
952 957 5.011533 CAGAATAGATCGGAGAATTCCTGGT 59.988 44.000 0.65 0.00 43.58 4.00
953 958 6.209589 CAGAATAGATCGGAGAATTCCTGGTA 59.790 42.308 0.65 0.00 43.58 3.25
954 959 6.957020 AGAATAGATCGGAGAATTCCTGGTAT 59.043 38.462 0.65 0.00 43.58 2.73
955 960 7.456269 AGAATAGATCGGAGAATTCCTGGTATT 59.544 37.037 0.65 0.00 43.58 1.89
956 961 5.476091 AGATCGGAGAATTCCTGGTATTC 57.524 43.478 15.83 15.83 43.58 1.75
957 962 4.284746 AGATCGGAGAATTCCTGGTATTCC 59.715 45.833 18.86 12.01 43.58 3.01
958 963 2.364324 TCGGAGAATTCCTGGTATTCCG 59.636 50.000 18.86 18.83 45.41 4.30
959 964 2.548067 CGGAGAATTCCTGGTATTCCGG 60.548 54.545 18.86 12.28 41.62 5.14
960 965 2.438392 GGAGAATTCCTGGTATTCCGGT 59.562 50.000 18.86 4.63 40.58 5.28
961 966 3.494573 GGAGAATTCCTGGTATTCCGGTC 60.495 52.174 18.86 11.86 40.58 4.79
962 967 2.438392 AGAATTCCTGGTATTCCGGTCC 59.562 50.000 18.86 0.87 38.38 4.46
963 968 2.191981 ATTCCTGGTATTCCGGTCCT 57.808 50.000 0.00 0.00 38.38 3.85
964 969 1.492764 TTCCTGGTATTCCGGTCCTC 58.507 55.000 0.00 0.00 38.38 3.71
965 970 0.337082 TCCTGGTATTCCGGTCCTCA 59.663 55.000 0.00 0.00 38.38 3.86
966 971 0.464452 CCTGGTATTCCGGTCCTCAC 59.536 60.000 0.00 0.00 38.38 3.51
991 996 1.141019 GCAGACGTAAGCCGATCCA 59.859 57.895 0.00 0.00 45.62 3.41
1082 1093 1.741525 CACCCAAGGGCAACACAAG 59.258 57.895 4.70 0.00 39.32 3.16
1486 1518 1.298859 GAAGTGTGGTGGCGTGGATC 61.299 60.000 0.00 0.00 0.00 3.36
1516 1548 1.378807 CTTTTGCGCGACATTCGTTTC 59.621 47.619 12.10 0.00 42.81 2.78
1524 1556 1.876416 CGACATTCGTTTCTGTGGGGT 60.876 52.381 0.00 0.00 34.72 4.95
1528 1560 3.181480 ACATTCGTTTCTGTGGGGTTTTG 60.181 43.478 0.00 0.00 0.00 2.44
1529 1561 0.741915 TCGTTTCTGTGGGGTTTTGC 59.258 50.000 0.00 0.00 0.00 3.68
1555 1588 0.672711 GTTTGGTGACTCGGTAGGGC 60.673 60.000 0.00 0.00 0.00 5.19
1583 1621 1.216977 CGTGATGCGAGGGGTGTAA 59.783 57.895 0.00 0.00 44.77 2.41
1586 1624 0.535335 TGATGCGAGGGGTGTAAGTC 59.465 55.000 0.00 0.00 0.00 3.01
1593 1631 1.201429 AGGGGTGTAAGTCTGCCTGG 61.201 60.000 0.00 0.00 0.00 4.45
1610 1648 2.283298 CTGGCGTGCTGATTAGATGTT 58.717 47.619 0.00 0.00 0.00 2.71
1611 1649 2.009051 TGGCGTGCTGATTAGATGTTG 58.991 47.619 0.00 0.00 0.00 3.33
1622 1660 4.101585 TGATTAGATGTTGAGGAGGCGAAT 59.898 41.667 0.00 0.00 0.00 3.34
1626 1664 5.398603 AGATGTTGAGGAGGCGAATATAG 57.601 43.478 0.00 0.00 0.00 1.31
1632 1670 4.930696 TGAGGAGGCGAATATAGTATCCA 58.069 43.478 0.00 0.00 0.00 3.41
1633 1671 4.950475 TGAGGAGGCGAATATAGTATCCAG 59.050 45.833 0.00 0.00 0.00 3.86
1635 1673 6.075949 AGGAGGCGAATATAGTATCCAGTA 57.924 41.667 0.00 0.00 0.00 2.74
1638 1676 6.377712 GGAGGCGAATATAGTATCCAGTACTT 59.622 42.308 0.00 0.00 40.80 2.24
1661 1699 1.072331 AGTAGCATTAGCCCAATCCCG 59.928 52.381 0.00 0.00 43.56 5.14
1675 1713 3.623960 CCAATCCCGTTGCTCGTATAAAA 59.376 43.478 1.89 0.00 36.46 1.52
1677 1715 5.440685 CAATCCCGTTGCTCGTATAAAATC 58.559 41.667 1.89 0.00 37.94 2.17
1679 1717 4.761975 TCCCGTTGCTCGTATAAAATCTT 58.238 39.130 1.89 0.00 37.94 2.40
1685 1723 6.291849 CGTTGCTCGTATAAAATCTTCAGGAG 60.292 42.308 0.00 0.00 34.52 3.69
1753 1791 3.572682 TCGTGGGTACTTATGAGCTATGG 59.427 47.826 0.00 0.00 0.00 2.74
1831 1872 7.931578 TTGGTAGGTTTTGATTGTAGTATGG 57.068 36.000 0.00 0.00 0.00 2.74
1840 1881 5.950544 TGATTGTAGTATGGGTACTGCTT 57.049 39.130 5.52 0.00 42.13 3.91
1951 1992 6.073003 GGTAATGCTTAATGTGCAGGAGTATC 60.073 42.308 0.00 0.00 44.04 2.24
1968 2009 5.081032 GAGTATCCTTAGGTGCAGGAGTAT 58.919 45.833 0.00 0.00 43.96 2.12
1969 2010 5.081032 AGTATCCTTAGGTGCAGGAGTATC 58.919 45.833 0.00 0.00 43.96 2.24
1984 2025 3.301274 GAGTATCCTTAGGTGCAGGAGT 58.699 50.000 0.00 0.00 43.96 3.85
1985 2026 4.471548 GAGTATCCTTAGGTGCAGGAGTA 58.528 47.826 0.00 0.00 43.96 2.59
2019 2060 5.928264 GCAAAGGAAAACAAATAGCATGAGT 59.072 36.000 0.00 0.00 0.00 3.41
2034 2075 2.727123 TGAGTGGCTTCTTTGAACCA 57.273 45.000 0.00 0.00 0.00 3.67
2035 2076 3.228188 TGAGTGGCTTCTTTGAACCAT 57.772 42.857 0.00 0.00 34.04 3.55
2082 2123 3.577805 AATAGGAAGACCGAAATGGGG 57.422 47.619 0.00 0.00 44.64 4.96
2085 2126 1.708551 AGGAAGACCGAAATGGGGAAA 59.291 47.619 0.00 0.00 44.64 3.13
2090 2131 5.512404 GGAAGACCGAAATGGGGAAAAATTT 60.512 40.000 0.00 0.00 44.64 1.82
2100 2141 8.721133 AAATGGGGAAAAATTTAGAGTGTAGT 57.279 30.769 0.00 0.00 0.00 2.73
2101 2142 7.703058 ATGGGGAAAAATTTAGAGTGTAGTG 57.297 36.000 0.00 0.00 0.00 2.74
2116 2157 8.621532 AGAGTGTAGTGCTTGATTGAAAATTA 57.378 30.769 0.00 0.00 0.00 1.40
2135 2176 7.494922 AAATTATATGGGAAAAAGGTGCTGT 57.505 32.000 0.00 0.00 0.00 4.40
2145 2186 3.996150 AAAGGTGCTGTTCACTGATTG 57.004 42.857 0.00 0.00 44.98 2.67
2160 2215 3.644966 TGATTGGAATCAGGGGTACAC 57.355 47.619 0.00 0.00 40.32 2.90
2163 2218 0.618458 TGGAATCAGGGGTACACAGC 59.382 55.000 0.00 0.00 0.00 4.40
2164 2219 0.912486 GGAATCAGGGGTACACAGCT 59.088 55.000 0.00 0.00 0.00 4.24
2190 2245 7.451255 TGACCACTGAAATTTGAGGAATAACAT 59.549 33.333 9.54 0.00 0.00 2.71
2194 2249 7.972277 CACTGAAATTTGAGGAATAACATCTGG 59.028 37.037 9.54 0.00 0.00 3.86
2251 2306 6.573664 TGATACCCATATTTTGCTACATGC 57.426 37.500 0.00 0.00 43.25 4.06
2252 2307 6.720748 ATGATACCCATATTTTGCTACATGCA 59.279 34.615 0.00 0.00 41.19 3.96
2253 2308 7.309377 ATGATACCCATATTTTGCTACATGCAC 60.309 37.037 0.00 0.00 42.03 4.57
2261 2316 1.508088 GCTACATGCACCAGGTTGC 59.492 57.895 6.98 6.98 39.16 4.17
2262 2317 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2263 2318 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2264 2319 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2265 2320 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2266 2321 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2267 2322 0.114168 ATGCACCAGGTTGCCCTTTA 59.886 50.000 10.46 0.00 42.25 1.85
2268 2323 0.114168 TGCACCAGGTTGCCCTTTAT 59.886 50.000 10.46 0.00 42.25 1.40
2269 2324 0.532115 GCACCAGGTTGCCCTTTATG 59.468 55.000 0.00 0.00 39.89 1.90
2270 2325 1.890573 GCACCAGGTTGCCCTTTATGA 60.891 52.381 0.00 0.00 39.89 2.15
2271 2326 2.738743 CACCAGGTTGCCCTTTATGAT 58.261 47.619 0.00 0.00 39.89 2.45
2272 2327 3.897239 CACCAGGTTGCCCTTTATGATA 58.103 45.455 0.00 0.00 39.89 2.15
2273 2328 3.632145 CACCAGGTTGCCCTTTATGATAC 59.368 47.826 0.00 0.00 39.89 2.24
2274 2329 3.222603 CCAGGTTGCCCTTTATGATACC 58.777 50.000 0.00 0.00 39.89 2.73
2275 2330 3.222603 CAGGTTGCCCTTTATGATACCC 58.777 50.000 0.00 0.00 39.89 3.69
2276 2331 2.856231 AGGTTGCCCTTTATGATACCCA 59.144 45.455 0.00 0.00 38.13 4.51
2277 2332 3.467103 AGGTTGCCCTTTATGATACCCAT 59.533 43.478 0.00 0.00 38.13 4.00
2278 2333 4.667858 AGGTTGCCCTTTATGATACCCATA 59.332 41.667 0.00 0.00 38.13 2.74
2293 2348 3.099141 ACCCATATTTTGGCACTTCAGG 58.901 45.455 0.00 0.00 44.97 3.86
2334 2389 8.984891 TGAAATTAGCAAAACAATAGGACATG 57.015 30.769 0.00 0.00 0.00 3.21
2339 2394 6.594788 AGCAAAACAATAGGACATGACATT 57.405 33.333 0.00 0.00 0.00 2.71
2369 2424 7.171508 TGTCTTGTTCAGATCATACTTGTTCAC 59.828 37.037 0.00 0.00 32.60 3.18
2428 2483 2.526304 TAGCACTCAAGGTCACACAC 57.474 50.000 0.00 0.00 0.00 3.82
2439 2494 5.469760 TCAAGGTCACACACTTCATGTTATG 59.530 40.000 0.00 0.00 40.64 1.90
2468 2523 9.751542 ATTGAAAAGTAGAATAGTATCTCACGG 57.248 33.333 0.00 0.00 0.00 4.94
2551 2606 2.113433 GCCATGCTCTGTGCTCTGG 61.113 63.158 15.07 15.07 43.37 3.86
2552 2607 1.298993 CCATGCTCTGTGCTCTGGT 59.701 57.895 12.61 0.00 43.37 4.00
2553 2608 1.025113 CCATGCTCTGTGCTCTGGTG 61.025 60.000 12.61 2.24 43.37 4.17
2554 2609 1.025113 CATGCTCTGTGCTCTGGTGG 61.025 60.000 3.20 0.00 43.37 4.61
2555 2610 2.046507 GCTCTGTGCTCTGGTGGG 60.047 66.667 0.00 0.00 38.95 4.61
2556 2611 2.587247 GCTCTGTGCTCTGGTGGGA 61.587 63.158 0.00 0.00 38.95 4.37
2560 2615 2.348998 GTGCTCTGGTGGGAGTGG 59.651 66.667 0.00 0.00 35.89 4.00
2583 2638 0.815734 TAGTGGCCTTAGACGCTGTC 59.184 55.000 3.32 1.15 0.00 3.51
2594 2649 2.259818 CGCTGTCGAGAGCCTGTT 59.740 61.111 26.87 0.00 38.10 3.16
2619 2674 2.089887 TTACGTGCCGAGGTGAAGCA 62.090 55.000 0.00 0.00 0.00 3.91
2638 2693 2.476854 GCAAAGCTTCTAGATGGTTGCG 60.477 50.000 20.03 15.76 0.00 4.85
2673 2728 0.622665 AGCAAGGATGTGGGAAGAGG 59.377 55.000 0.00 0.00 0.00 3.69
2677 2732 1.075601 AGGATGTGGGAAGAGGCAAA 58.924 50.000 0.00 0.00 0.00 3.68
2696 2751 8.655935 AGGCAAATATAATTTGAAGGGATAGG 57.344 34.615 14.83 0.00 0.00 2.57
2712 2767 6.441222 AGGGATAGGTGTGAGTAGTAATTCA 58.559 40.000 0.00 0.00 0.00 2.57
2852 2919 6.572519 ACTTTTGCTTTAAGCTTGTCATGAA 58.427 32.000 18.20 0.00 42.97 2.57
2885 2952 5.967674 CAGCTTGACAACTAACTCTTGTTTG 59.032 40.000 0.00 0.00 37.59 2.93
2944 3011 9.525409 GATTTGCTCATCAATATAAGTTTTGCT 57.475 29.630 0.00 0.00 34.12 3.91
3025 3092 4.514441 CAGGCCTGACAGTCATATTGATTC 59.486 45.833 29.88 0.00 0.00 2.52
3103 3170 7.453126 ACCTTACAAATATGTTTTCCACCATCA 59.547 33.333 0.00 0.00 41.05 3.07
3114 3181 3.735720 TCCACCATCAACCATTCATCA 57.264 42.857 0.00 0.00 0.00 3.07
3118 3185 3.383505 CACCATCAACCATTCATCATGCT 59.616 43.478 0.00 0.00 0.00 3.79
3121 3188 4.321008 CCATCAACCATTCATCATGCTAGC 60.321 45.833 8.10 8.10 0.00 3.42
3137 3204 2.744494 GCTAGCAGGAAACATGGAGAGG 60.744 54.545 10.63 0.00 0.00 3.69
3154 3221 3.815962 GAGAGGTGTGGAAGAGGAAAAAC 59.184 47.826 0.00 0.00 0.00 2.43
3167 3235 5.617252 AGAGGAAAAACCATGAACGAACTA 58.383 37.500 0.00 0.00 42.04 2.24
3200 3268 6.613153 AAGAAGTTCTTGTGTAGCTATCCT 57.387 37.500 17.35 0.00 34.98 3.24
3218 3286 9.771534 AGCTATCCTCACTTTAATACATTCTTC 57.228 33.333 0.00 0.00 0.00 2.87
3253 3321 7.202526 ACGGAAATCAATATTGCAGTTATTGG 58.797 34.615 21.73 12.55 37.55 3.16
3282 3350 3.326747 CAGTGTACCTGTCCTTTGCTAC 58.673 50.000 0.00 0.00 36.37 3.58
3325 3393 4.808558 TGGCATTATCTTCTGTTGTTTGC 58.191 39.130 0.00 0.00 0.00 3.68
3361 3429 8.339714 TCATTTTTAAGTTGAAGGTTACTCACG 58.660 33.333 0.00 0.00 0.00 4.35
3549 3638 3.188159 TGTCACTGTAACCCTGACAAC 57.812 47.619 0.00 0.00 41.00 3.32
3550 3639 2.502130 TGTCACTGTAACCCTGACAACA 59.498 45.455 0.00 0.00 41.00 3.33
3551 3640 3.135712 TGTCACTGTAACCCTGACAACAT 59.864 43.478 0.00 0.00 41.00 2.71
3552 3641 4.134563 GTCACTGTAACCCTGACAACATT 58.865 43.478 0.00 0.00 35.39 2.71
3553 3642 4.024048 GTCACTGTAACCCTGACAACATTG 60.024 45.833 0.00 0.00 35.39 2.82
3572 3661 8.344098 CAACATTGTTGCTTTATTTTGTTCCAT 58.656 29.630 16.05 0.00 0.00 3.41
3674 3764 9.323985 TGCTGCTCTTAATTTTGTTTTATGTTT 57.676 25.926 0.00 0.00 0.00 2.83
3736 3826 8.974060 AGTTCTACTCAATCTCTTAGTCCTAG 57.026 38.462 0.00 0.00 0.00 3.02
3754 3845 1.068352 AGGCCTGTTGGTCCTTCCTT 61.068 55.000 3.11 0.00 39.18 3.36
3813 3904 5.292589 CCAAATAGGAACAGCATGCATTTTC 59.707 40.000 21.98 17.39 39.21 2.29
3887 3979 9.436957 GAAGATGTTTTGTCTAATCTTGTCCTA 57.563 33.333 1.71 0.00 39.01 2.94
3888 3980 9.793259 AAGATGTTTTGTCTAATCTTGTCCTAA 57.207 29.630 0.00 0.00 37.84 2.69
3889 3981 9.793259 AGATGTTTTGTCTAATCTTGTCCTAAA 57.207 29.630 0.00 0.00 0.00 1.85
3894 3986 9.567776 TTTTGTCTAATCTTGTCCTAAATCACA 57.432 29.630 0.00 0.00 0.00 3.58
3895 3987 9.567776 TTTGTCTAATCTTGTCCTAAATCACAA 57.432 29.630 0.00 0.00 0.00 3.33
3896 3988 9.739276 TTGTCTAATCTTGTCCTAAATCACAAT 57.261 29.630 0.00 0.00 32.13 2.71
3992 4084 7.609760 TTGTAGTTAGCACTATTGTGATTGG 57.390 36.000 11.66 0.00 46.55 3.16
4071 4164 0.764890 TTAGGTCAGCTGCTGTGGTT 59.235 50.000 27.24 14.64 32.61 3.67
4140 4233 2.268298 CAGTGGGTAAAAGATCGACGG 58.732 52.381 0.00 0.00 0.00 4.79
4309 4419 6.126409 GTGGTAAGATAAATTGGACCATCCA 58.874 40.000 0.00 0.00 46.61 3.41
4326 4436 5.010617 ACCATCCATTTTAGTCAACCAACAC 59.989 40.000 0.00 0.00 0.00 3.32
4384 4494 9.436957 AGTACTTATCTAGTGAAATTGGTGTTG 57.563 33.333 0.00 0.00 37.73 3.33
4385 4495 9.216117 GTACTTATCTAGTGAAATTGGTGTTGT 57.784 33.333 0.00 0.00 37.73 3.32
4387 4497 9.216117 ACTTATCTAGTGAAATTGGTGTTGTAC 57.784 33.333 0.00 0.00 35.19 2.90
4391 4501 7.051623 TCTAGTGAAATTGGTGTTGTACTGTT 58.948 34.615 0.00 0.00 0.00 3.16
4417 4527 4.652822 AGATAAACTCGACCAGCCTTTTT 58.347 39.130 0.00 0.00 0.00 1.94
4453 4563 5.336690 GGGTATGTGTTGTCATTTGAATGCT 60.337 40.000 0.00 0.00 36.36 3.79
4494 4604 9.783256 GGAACTAGATTAATAAATGCGTTGTTT 57.217 29.630 0.00 0.00 0.00 2.83
4514 4624 7.754069 TGTTTGTTAGTTTTCTCATTGCAAG 57.246 32.000 4.94 0.00 0.00 4.01
4555 4666 7.450074 TGGATAACCGTTATGCAGATTAATCT 58.550 34.615 18.49 12.37 38.76 2.40
4557 4668 7.602644 GGATAACCGTTATGCAGATTAATCTCA 59.397 37.037 15.24 15.35 34.22 3.27
4567 4678 7.465353 TGCAGATTAATCTCATTTTCCAACA 57.535 32.000 15.24 0.00 34.22 3.33
4612 4723 3.896888 TCATCAACTCCTTGCCATTGTTT 59.103 39.130 0.00 0.00 0.00 2.83
4741 4853 6.183360 TGGGCAATCCAAATGTGTTATCATAC 60.183 38.462 0.00 0.00 43.84 2.39
4754 4866 7.541162 TGTGTTATCATACGCTAACTGTAACT 58.459 34.615 0.00 0.00 0.00 2.24
4844 4956 2.262915 CCAGCTCAGACCACGGTC 59.737 66.667 8.23 8.23 44.86 4.79
4918 5030 0.322816 ATCCAAGTGCCTGCGTTCAT 60.323 50.000 0.00 0.00 0.00 2.57
4949 5061 0.392327 TGCCATCCATTTTCGAGCGA 60.392 50.000 0.00 0.00 0.00 4.93
5018 5130 2.722201 AATGGGAGTCGGAGTCGGC 61.722 63.158 6.74 0.00 42.03 5.54
5122 5234 1.209128 GTCGCATATCACTTGGGACG 58.791 55.000 5.33 0.00 43.94 4.79
5137 5249 1.139058 GGGACGGATGCATGTTACTCT 59.861 52.381 2.46 0.00 0.00 3.24
5343 5464 2.290705 ACCTGTGGTTGGTGGCTTATAC 60.291 50.000 0.00 0.00 36.30 1.47
5344 5465 2.026262 CCTGTGGTTGGTGGCTTATACT 60.026 50.000 0.00 0.00 0.00 2.12
5345 5466 3.199071 CCTGTGGTTGGTGGCTTATACTA 59.801 47.826 0.00 0.00 0.00 1.82
5351 5472 6.038271 GTGGTTGGTGGCTTATACTATTTCTG 59.962 42.308 0.00 0.00 0.00 3.02
5382 5503 3.323286 TTCGGGTGCATTCGGGGA 61.323 61.111 10.86 0.00 0.00 4.81
5394 5515 0.538516 TTCGGGGATGGTTGTGGTTG 60.539 55.000 0.00 0.00 0.00 3.77
5401 5522 1.398958 ATGGTTGTGGTTGGTGGCAC 61.399 55.000 9.70 9.70 0.00 5.01
5434 5555 3.509967 ACCTGCATAACTTAACTTTGGGC 59.490 43.478 0.00 0.00 0.00 5.36
5484 5607 3.612479 GCAGCCAGACGATTGAAATTGTT 60.612 43.478 0.00 0.00 33.21 2.83
5517 5640 8.019094 AGGTGACAATTTTAATTTACGCAGTAC 58.981 33.333 0.00 0.00 45.76 2.73
5541 5664 3.370978 ACACGCCTGATAATGTTTCTTCG 59.629 43.478 0.00 0.00 0.00 3.79
5542 5665 2.936498 ACGCCTGATAATGTTTCTTCGG 59.064 45.455 0.00 0.00 0.00 4.30
5544 5667 2.286418 GCCTGATAATGTTTCTTCGGCG 60.286 50.000 0.00 0.00 0.00 6.46
5545 5668 2.936498 CCTGATAATGTTTCTTCGGCGT 59.064 45.455 6.85 0.00 0.00 5.68
5546 5669 3.001330 CCTGATAATGTTTCTTCGGCGTC 59.999 47.826 6.85 0.00 0.00 5.19
5548 5671 3.997681 TGATAATGTTTCTTCGGCGTCAA 59.002 39.130 6.85 0.00 0.00 3.18
5550 5673 0.872388 ATGTTTCTTCGGCGTCAACC 59.128 50.000 6.85 0.00 0.00 3.77
5551 5674 1.161563 TGTTTCTTCGGCGTCAACCC 61.162 55.000 6.85 0.00 0.00 4.11
5564 5885 2.030457 CGTCAACCCTATTTGTCATCGC 59.970 50.000 0.00 0.00 0.00 4.58
5587 5908 1.804151 TCGATCCGCTCCAAAAACTTG 59.196 47.619 0.00 0.00 0.00 3.16
5601 5922 0.107410 AACTTGTTGAGGTGGCGACA 60.107 50.000 0.00 0.00 38.70 4.35
5624 5945 3.881713 GCCAAAGGGTTGTTCCATAGGAT 60.882 47.826 0.00 0.00 38.11 3.24
5628 5949 1.594331 GGTTGTTCCATAGGATCCGC 58.406 55.000 5.98 0.00 35.97 5.54
5633 5954 4.742201 CCATAGGATCCGCGGCCG 62.742 72.222 24.05 24.05 0.00 6.13
5651 5972 4.389576 CAAGGCCGTGCTGCGAAC 62.390 66.667 5.51 0.00 44.77 3.95
5652 5973 4.927782 AAGGCCGTGCTGCGAACA 62.928 61.111 0.00 0.00 44.77 3.18
5653 5974 4.704833 AGGCCGTGCTGCGAACAT 62.705 61.111 0.00 0.00 44.77 2.71
5654 5975 4.465512 GGCCGTGCTGCGAACATG 62.466 66.667 0.00 0.00 44.77 3.21
5659 5980 1.840630 CGTGCTGCGAACATGGAACA 61.841 55.000 0.00 0.00 44.37 3.18
5686 6007 2.825836 GCGGATTCCACAGCCCTG 60.826 66.667 3.09 0.00 0.00 4.45
5695 6016 2.282674 ACAGCCCTGTGCACCATG 60.283 61.111 15.69 8.23 43.11 3.66
5701 6390 2.361610 CTGTGCACCATGACCCCC 60.362 66.667 15.69 0.00 0.00 5.40
5717 6406 1.211969 CCCGTATCTACCCATCGCG 59.788 63.158 0.00 0.00 0.00 5.87
5720 6409 0.109873 CGTATCTACCCATCGCGGTC 60.110 60.000 6.13 0.00 37.34 4.79
5722 6411 0.956633 TATCTACCCATCGCGGTCAC 59.043 55.000 6.13 0.00 37.34 3.67
5758 6447 2.812358 CCAAAAGCTGTTGGGTTACC 57.188 50.000 26.01 0.00 43.79 2.85
5768 6457 5.245301 AGCTGTTGGGTTACCCTTTAATTTC 59.755 40.000 22.29 3.53 45.70 2.17
5779 6468 5.405935 CCCTTTAATTTCAGGGTCCAAAG 57.594 43.478 11.92 0.37 44.58 2.77
5782 6471 5.775195 CCTTTAATTTCAGGGTCCAAAGAGT 59.225 40.000 0.00 0.00 0.00 3.24
5783 6472 6.267699 CCTTTAATTTCAGGGTCCAAAGAGTT 59.732 38.462 0.00 0.00 0.00 3.01
5784 6473 6.648879 TTAATTTCAGGGTCCAAAGAGTTG 57.351 37.500 0.00 0.00 34.25 3.16
5786 6475 0.250295 TCAGGGTCCAAAGAGTTGCG 60.250 55.000 0.00 0.00 33.01 4.85
5787 6476 1.073199 AGGGTCCAAAGAGTTGCGG 59.927 57.895 0.00 0.00 33.01 5.69
5790 6479 2.282180 TCCAAAGAGTTGCGGGGC 60.282 61.111 0.00 0.00 33.01 5.80
5791 6480 3.373565 CCAAAGAGTTGCGGGGCC 61.374 66.667 0.00 0.00 33.01 5.80
5793 6482 2.282462 AAAGAGTTGCGGGGCCAG 60.282 61.111 4.39 1.12 0.00 4.85
5794 6483 3.868200 AAAGAGTTGCGGGGCCAGG 62.868 63.158 4.39 0.00 0.00 4.45
5820 6509 2.020720 ACCGTTCATTGTGCAACTTGA 58.979 42.857 0.00 0.00 38.04 3.02
5837 6526 8.801299 TGCAACTTGATGGAGTATTTAATTTGA 58.199 29.630 0.00 0.00 0.00 2.69
5838 6527 9.807649 GCAACTTGATGGAGTATTTAATTTGAT 57.192 29.630 0.00 0.00 0.00 2.57
5948 6637 9.860898 ACAATCCTTACAGAAATTAGAAATTGC 57.139 29.630 0.00 0.00 0.00 3.56
5960 6649 2.949447 AGAAATTGCACACCAGTCCTT 58.051 42.857 0.00 0.00 0.00 3.36
5962 6651 3.068590 AGAAATTGCACACCAGTCCTTTG 59.931 43.478 0.00 0.00 0.00 2.77
5963 6652 1.331214 ATTGCACACCAGTCCTTTGG 58.669 50.000 0.00 0.00 44.09 3.28
5967 6656 1.963515 GCACACCAGTCCTTTGGAAAT 59.036 47.619 0.00 0.00 40.87 2.17
5975 6664 4.202111 CCAGTCCTTTGGAAATTTGACGTT 60.202 41.667 0.00 0.00 40.87 3.99
5985 6674 5.578727 TGGAAATTTGACGTTGTTTTCCTTG 59.421 36.000 22.55 0.00 43.62 3.61
5995 6684 2.722094 TGTTTTCCTTGTGCACTCACT 58.278 42.857 19.41 0.00 43.49 3.41
6053 6742 3.711190 TGGACCAGCTAGCATGAATCTAA 59.289 43.478 18.83 4.61 0.00 2.10
6056 6745 4.122776 ACCAGCTAGCATGAATCTAAACG 58.877 43.478 18.83 0.00 0.00 3.60
6057 6746 4.122776 CCAGCTAGCATGAATCTAAACGT 58.877 43.478 18.83 0.00 0.00 3.99
6058 6747 5.163447 ACCAGCTAGCATGAATCTAAACGTA 60.163 40.000 18.83 0.00 0.00 3.57
6077 6766 3.303495 CGTAGTACCAAGCACATTTCGAG 59.697 47.826 0.00 0.00 0.00 4.04
6093 6782 0.539051 CGAGCTGGGAAAGAGACCAT 59.461 55.000 0.00 0.00 35.93 3.55
6095 6784 1.836802 GAGCTGGGAAAGAGACCATCT 59.163 52.381 0.00 0.00 41.27 2.90
6112 6801 5.195940 ACCATCTGAACAAGGATATGTTGG 58.804 41.667 0.00 0.00 43.31 3.77
6113 6802 5.195940 CCATCTGAACAAGGATATGTTGGT 58.804 41.667 0.00 0.00 43.31 3.67
6114 6803 6.069673 ACCATCTGAACAAGGATATGTTGGTA 60.070 38.462 0.00 0.00 43.31 3.25
6115 6804 6.260936 CCATCTGAACAAGGATATGTTGGTAC 59.739 42.308 0.00 0.00 43.31 3.34
6142 6831 1.584724 CATCCCAGGTACCAGGAACT 58.415 55.000 24.36 7.97 43.88 3.01
6144 6833 0.252558 TCCCAGGTACCAGGAACTCC 60.253 60.000 24.36 0.00 34.60 3.85
6163 6853 5.126067 ACTCCGGAATCAGGTCATATTTTG 58.874 41.667 5.23 0.00 0.00 2.44
6174 6864 9.699410 ATCAGGTCATATTTTGGAGAATTTACA 57.301 29.630 0.00 0.00 0.00 2.41
6191 6886 7.657354 AGAATTTACATTGTTTTCAGGCTTTCC 59.343 33.333 0.00 0.00 0.00 3.13
6199 6894 1.237285 TTCAGGCTTTCCGCAGAAGC 61.237 55.000 7.05 7.05 41.67 3.86
6210 6905 3.787001 CAGAAGCCCCTCCGTCCC 61.787 72.222 0.00 0.00 0.00 4.46
6216 6911 2.995547 CCCCTCCGTCCCGAATTT 59.004 61.111 0.00 0.00 0.00 1.82
6217 6912 1.974973 GCCCCTCCGTCCCGAATTTA 61.975 60.000 0.00 0.00 0.00 1.40
6218 6913 0.763035 CCCCTCCGTCCCGAATTTAT 59.237 55.000 0.00 0.00 0.00 1.40
6224 6919 3.936453 CTCCGTCCCGAATTTATTTGTCA 59.064 43.478 0.00 0.00 0.00 3.58
6233 6928 7.928706 TCCCGAATTTATTTGTCACAAAAATGT 59.071 29.630 7.14 0.00 0.00 2.71
6234 6929 9.197694 CCCGAATTTATTTGTCACAAAAATGTA 57.802 29.630 7.14 0.00 0.00 2.29
6239 6934 9.705290 ATTTATTTGTCACAAAAATGTACTCCC 57.295 29.630 7.14 0.00 0.00 4.30
6240 6935 6.976934 ATTTGTCACAAAAATGTACTCCCT 57.023 33.333 7.14 0.00 0.00 4.20
6241 6936 6.385649 TTTGTCACAAAAATGTACTCCCTC 57.614 37.500 0.00 0.00 0.00 4.30
6242 6937 5.304686 TGTCACAAAAATGTACTCCCTCT 57.695 39.130 0.00 0.00 0.00 3.69
6243 6938 5.063204 TGTCACAAAAATGTACTCCCTCTG 58.937 41.667 0.00 0.00 0.00 3.35
6244 6939 5.063880 GTCACAAAAATGTACTCCCTCTGT 58.936 41.667 0.00 0.00 0.00 3.41
6245 6940 5.531287 GTCACAAAAATGTACTCCCTCTGTT 59.469 40.000 0.00 0.00 0.00 3.16
6246 6941 5.763204 TCACAAAAATGTACTCCCTCTGTTC 59.237 40.000 0.00 0.00 0.00 3.18
6247 6942 5.765182 CACAAAAATGTACTCCCTCTGTTCT 59.235 40.000 0.00 0.00 0.00 3.01
6248 6943 6.934645 CACAAAAATGTACTCCCTCTGTTCTA 59.065 38.462 0.00 0.00 0.00 2.10
6249 6944 7.444183 CACAAAAATGTACTCCCTCTGTTCTAA 59.556 37.037 0.00 0.00 0.00 2.10
6250 6945 7.996644 ACAAAAATGTACTCCCTCTGTTCTAAA 59.003 33.333 0.00 0.00 0.00 1.85
6251 6946 9.014297 CAAAAATGTACTCCCTCTGTTCTAAAT 57.986 33.333 0.00 0.00 0.00 1.40
6257 6952 9.710818 TGTACTCCCTCTGTTCTAAATATAAGT 57.289 33.333 0.00 0.00 0.00 2.24
6260 6955 9.495382 ACTCCCTCTGTTCTAAATATAAGTCTT 57.505 33.333 0.00 0.00 0.00 3.01
6294 6989 9.772973 ATTTCATTATAAACTACATACGGAGCA 57.227 29.630 0.00 0.00 0.00 4.26
6295 6990 9.602568 TTTCATTATAAACTACATACGGAGCAA 57.397 29.630 0.00 0.00 0.00 3.91
6296 6991 9.602568 TTCATTATAAACTACATACGGAGCAAA 57.397 29.630 0.00 0.00 0.00 3.68
6297 6992 9.602568 TCATTATAAACTACATACGGAGCAAAA 57.397 29.630 0.00 0.00 0.00 2.44
6302 6997 7.916914 AAACTACATACGGAGCAAAATAAGT 57.083 32.000 0.00 0.00 0.00 2.24
6304 6999 9.439500 AAACTACATACGGAGCAAAATAAGTAA 57.561 29.630 0.00 0.00 0.00 2.24
6305 7000 9.439500 AACTACATACGGAGCAAAATAAGTAAA 57.561 29.630 0.00 0.00 0.00 2.01
6306 7001 9.609346 ACTACATACGGAGCAAAATAAGTAAAT 57.391 29.630 0.00 0.00 0.00 1.40
6308 7003 8.732746 ACATACGGAGCAAAATAAGTAAATCT 57.267 30.769 0.00 0.00 0.00 2.40
6309 7004 9.826574 ACATACGGAGCAAAATAAGTAAATCTA 57.173 29.630 0.00 0.00 0.00 1.98
6311 7006 9.826574 ATACGGAGCAAAATAAGTAAATCTACA 57.173 29.630 0.00 0.00 0.00 2.74
6312 7007 8.732746 ACGGAGCAAAATAAGTAAATCTACAT 57.267 30.769 0.00 0.00 0.00 2.29
6313 7008 9.174166 ACGGAGCAAAATAAGTAAATCTACATT 57.826 29.630 0.00 0.00 0.00 2.71
6314 7009 9.651718 CGGAGCAAAATAAGTAAATCTACATTC 57.348 33.333 0.00 0.00 0.00 2.67
6354 7049 5.657474 ACATCCGTATGTAGTTTGTAGTGG 58.343 41.667 0.00 0.00 44.66 4.00
6355 7050 5.419788 ACATCCGTATGTAGTTTGTAGTGGA 59.580 40.000 0.00 0.00 44.66 4.02
6356 7051 5.981088 TCCGTATGTAGTTTGTAGTGGAA 57.019 39.130 0.00 0.00 0.00 3.53
6357 7052 6.534475 TCCGTATGTAGTTTGTAGTGGAAT 57.466 37.500 0.00 0.00 0.00 3.01
6358 7053 6.567050 TCCGTATGTAGTTTGTAGTGGAATC 58.433 40.000 0.00 0.00 0.00 2.52
6359 7054 6.379133 TCCGTATGTAGTTTGTAGTGGAATCT 59.621 38.462 0.00 0.00 0.00 2.40
6360 7055 7.039882 CCGTATGTAGTTTGTAGTGGAATCTT 58.960 38.462 0.00 0.00 0.00 2.40
6361 7056 7.548075 CCGTATGTAGTTTGTAGTGGAATCTTT 59.452 37.037 0.00 0.00 0.00 2.52
6362 7057 9.577110 CGTATGTAGTTTGTAGTGGAATCTTTA 57.423 33.333 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.306937 TCTGAGACCAAAACCATTCTGTCTA 59.693 40.000 0.00 0.00 32.53 2.59
22 24 3.999663 CAGTGATCCTCTGAGACCAAAAC 59.000 47.826 6.17 0.00 35.20 2.43
67 69 6.976934 TTCTTTCCAGAATTTTGTAAGGCT 57.023 33.333 7.69 0.00 33.80 4.58
104 106 3.492309 CCTCTGGTAGATGCAGCTTGTAG 60.492 52.174 11.02 6.25 0.00 2.74
178 180 1.065854 GTAGAGGCACAGCTTGATGGT 60.066 52.381 0.00 0.00 0.00 3.55
302 305 1.635487 AGGCTCTCCCACTGCATTAAA 59.365 47.619 0.00 0.00 35.39 1.52
375 378 1.065551 GCGAAAAAGCTTGTGACCTGT 59.934 47.619 0.00 0.00 0.00 4.00
415 418 0.370273 GACAATGTCGTCGCCATGAC 59.630 55.000 0.00 0.00 44.53 3.06
424 427 1.003355 CAGGGCCTGACAATGTCGT 60.003 57.895 29.96 0.00 34.95 4.34
427 430 1.380302 GTCCAGGGCCTGACAATGT 59.620 57.895 34.84 0.00 32.44 2.71
443 446 5.049267 GTCGATCTTCAGTATGTCCTAGGTC 60.049 48.000 9.08 3.43 37.40 3.85
453 456 4.707448 AGAGTTGGTGTCGATCTTCAGTAT 59.293 41.667 0.00 0.00 0.00 2.12
478 481 0.663153 AACCGTTGCTTGTCTGAAGC 59.337 50.000 0.00 0.00 43.29 3.86
496 499 2.768253 ACGCCATCTTGTCATCTCAA 57.232 45.000 0.00 0.00 0.00 3.02
541 544 1.066587 CTGGAGATCGGCGAGGAAC 59.933 63.158 17.22 6.62 0.00 3.62
542 545 0.106868 TACTGGAGATCGGCGAGGAA 60.107 55.000 17.22 0.00 0.00 3.36
607 610 1.623359 CAGCTCACGCAGTAACTCTC 58.377 55.000 0.00 0.00 41.61 3.20
616 619 1.004560 CTCCTTTCCAGCTCACGCA 60.005 57.895 0.00 0.00 39.10 5.24
678 681 7.387265 TTCTAACTATGCTATGAATTGGGGA 57.613 36.000 0.00 0.00 0.00 4.81
686 691 8.548880 AACTAGGGTTTCTAACTATGCTATGA 57.451 34.615 0.00 0.00 30.55 2.15
688 693 8.548880 TGAACTAGGGTTTCTAACTATGCTAT 57.451 34.615 0.00 0.00 35.58 2.97
697 702 7.093024 CCTTACCAGATGAACTAGGGTTTCTAA 60.093 40.741 0.00 0.00 35.58 2.10
757 762 4.082125 AGTAATTCAAGGGCTTGTTCTGG 58.918 43.478 0.00 0.00 41.16 3.86
766 771 5.393135 GCCTAAAACAGAGTAATTCAAGGGC 60.393 44.000 0.00 0.00 0.00 5.19
771 776 9.174166 GAATAAGGCCTAAAACAGAGTAATTCA 57.826 33.333 5.16 0.00 0.00 2.57
807 812 3.816398 TCTCCAGTCCTCTTGAGAAGA 57.184 47.619 0.00 0.00 38.81 2.87
809 814 4.119556 TCTTCTCCAGTCCTCTTGAGAA 57.880 45.455 10.01 10.01 44.59 2.87
810 815 3.816398 TCTTCTCCAGTCCTCTTGAGA 57.184 47.619 0.00 0.00 39.61 3.27
811 816 5.177326 CAAATCTTCTCCAGTCCTCTTGAG 58.823 45.833 0.00 0.00 35.55 3.02
812 817 4.019860 CCAAATCTTCTCCAGTCCTCTTGA 60.020 45.833 0.00 0.00 0.00 3.02
813 818 4.260170 CCAAATCTTCTCCAGTCCTCTTG 58.740 47.826 0.00 0.00 0.00 3.02
814 819 3.265479 CCCAAATCTTCTCCAGTCCTCTT 59.735 47.826 0.00 0.00 0.00 2.85
815 820 2.843113 CCCAAATCTTCTCCAGTCCTCT 59.157 50.000 0.00 0.00 0.00 3.69
816 821 2.573915 ACCCAAATCTTCTCCAGTCCTC 59.426 50.000 0.00 0.00 0.00 3.71
817 822 2.307098 CACCCAAATCTTCTCCAGTCCT 59.693 50.000 0.00 0.00 0.00 3.85
818 823 2.619074 CCACCCAAATCTTCTCCAGTCC 60.619 54.545 0.00 0.00 0.00 3.85
819 824 2.305927 TCCACCCAAATCTTCTCCAGTC 59.694 50.000 0.00 0.00 0.00 3.51
820 825 2.348472 TCCACCCAAATCTTCTCCAGT 58.652 47.619 0.00 0.00 0.00 4.00
821 826 3.659183 ATCCACCCAAATCTTCTCCAG 57.341 47.619 0.00 0.00 0.00 3.86
822 827 4.402616 AAATCCACCCAAATCTTCTCCA 57.597 40.909 0.00 0.00 0.00 3.86
823 828 4.772100 TCAAAATCCACCCAAATCTTCTCC 59.228 41.667 0.00 0.00 0.00 3.71
824 829 5.478332 AGTCAAAATCCACCCAAATCTTCTC 59.522 40.000 0.00 0.00 0.00 2.87
825 830 5.397360 AGTCAAAATCCACCCAAATCTTCT 58.603 37.500 0.00 0.00 0.00 2.85
826 831 5.728637 AGTCAAAATCCACCCAAATCTTC 57.271 39.130 0.00 0.00 0.00 2.87
827 832 5.366477 ACAAGTCAAAATCCACCCAAATCTT 59.634 36.000 0.00 0.00 0.00 2.40
828 833 4.901250 ACAAGTCAAAATCCACCCAAATCT 59.099 37.500 0.00 0.00 0.00 2.40
829 834 5.213891 ACAAGTCAAAATCCACCCAAATC 57.786 39.130 0.00 0.00 0.00 2.17
830 835 6.074648 TCTACAAGTCAAAATCCACCCAAAT 58.925 36.000 0.00 0.00 0.00 2.32
831 836 5.450453 TCTACAAGTCAAAATCCACCCAAA 58.550 37.500 0.00 0.00 0.00 3.28
832 837 5.055265 TCTACAAGTCAAAATCCACCCAA 57.945 39.130 0.00 0.00 0.00 4.12
833 838 4.715534 TCTACAAGTCAAAATCCACCCA 57.284 40.909 0.00 0.00 0.00 4.51
834 839 5.313712 TCTTCTACAAGTCAAAATCCACCC 58.686 41.667 0.00 0.00 0.00 4.61
835 840 7.454260 AATCTTCTACAAGTCAAAATCCACC 57.546 36.000 0.00 0.00 0.00 4.61
850 855 9.660180 GGGTTTGAGATGGATATAATCTTCTAC 57.340 37.037 2.70 2.35 34.50 2.59
851 856 9.621239 AGGGTTTGAGATGGATATAATCTTCTA 57.379 33.333 2.70 0.00 34.50 2.10
852 857 8.381636 CAGGGTTTGAGATGGATATAATCTTCT 58.618 37.037 2.70 0.00 34.50 2.85
853 858 7.120432 GCAGGGTTTGAGATGGATATAATCTTC 59.880 40.741 2.70 0.00 34.50 2.87
854 859 6.944862 GCAGGGTTTGAGATGGATATAATCTT 59.055 38.462 2.70 0.00 34.50 2.40
855 860 6.479884 GCAGGGTTTGAGATGGATATAATCT 58.520 40.000 0.94 0.94 37.09 2.40
856 861 5.649831 GGCAGGGTTTGAGATGGATATAATC 59.350 44.000 0.00 0.00 0.00 1.75
857 862 5.074929 TGGCAGGGTTTGAGATGGATATAAT 59.925 40.000 0.00 0.00 0.00 1.28
858 863 4.415179 TGGCAGGGTTTGAGATGGATATAA 59.585 41.667 0.00 0.00 0.00 0.98
859 864 3.980022 TGGCAGGGTTTGAGATGGATATA 59.020 43.478 0.00 0.00 0.00 0.86
860 865 2.785269 TGGCAGGGTTTGAGATGGATAT 59.215 45.455 0.00 0.00 0.00 1.63
861 866 2.204463 TGGCAGGGTTTGAGATGGATA 58.796 47.619 0.00 0.00 0.00 2.59
862 867 1.002069 TGGCAGGGTTTGAGATGGAT 58.998 50.000 0.00 0.00 0.00 3.41
863 868 0.776810 TTGGCAGGGTTTGAGATGGA 59.223 50.000 0.00 0.00 0.00 3.41
864 869 1.273327 GTTTGGCAGGGTTTGAGATGG 59.727 52.381 0.00 0.00 0.00 3.51
865 870 1.273327 GGTTTGGCAGGGTTTGAGATG 59.727 52.381 0.00 0.00 0.00 2.90
866 871 1.632589 GGTTTGGCAGGGTTTGAGAT 58.367 50.000 0.00 0.00 0.00 2.75
867 872 0.469144 GGGTTTGGCAGGGTTTGAGA 60.469 55.000 0.00 0.00 0.00 3.27
868 873 1.471829 GGGGTTTGGCAGGGTTTGAG 61.472 60.000 0.00 0.00 0.00 3.02
869 874 1.458588 GGGGTTTGGCAGGGTTTGA 60.459 57.895 0.00 0.00 0.00 2.69
870 875 1.459348 AGGGGTTTGGCAGGGTTTG 60.459 57.895 0.00 0.00 0.00 2.93
871 876 1.152333 GAGGGGTTTGGCAGGGTTT 60.152 57.895 0.00 0.00 0.00 3.27
872 877 2.526110 GAGGGGTTTGGCAGGGTT 59.474 61.111 0.00 0.00 0.00 4.11
873 878 2.723334 TAGGAGGGGTTTGGCAGGGT 62.723 60.000 0.00 0.00 0.00 4.34
874 879 1.506028 TTAGGAGGGGTTTGGCAGGG 61.506 60.000 0.00 0.00 0.00 4.45
875 880 0.407918 TTTAGGAGGGGTTTGGCAGG 59.592 55.000 0.00 0.00 0.00 4.85
876 881 2.379005 GATTTAGGAGGGGTTTGGCAG 58.621 52.381 0.00 0.00 0.00 4.85
877 882 1.006639 GGATTTAGGAGGGGTTTGGCA 59.993 52.381 0.00 0.00 0.00 4.92
878 883 1.006639 TGGATTTAGGAGGGGTTTGGC 59.993 52.381 0.00 0.00 0.00 4.52
879 884 3.299503 CATGGATTTAGGAGGGGTTTGG 58.700 50.000 0.00 0.00 0.00 3.28
880 885 3.954258 GACATGGATTTAGGAGGGGTTTG 59.046 47.826 0.00 0.00 0.00 2.93
881 886 3.596046 TGACATGGATTTAGGAGGGGTTT 59.404 43.478 0.00 0.00 0.00 3.27
882 887 3.197983 TGACATGGATTTAGGAGGGGTT 58.802 45.455 0.00 0.00 0.00 4.11
883 888 2.858644 TGACATGGATTTAGGAGGGGT 58.141 47.619 0.00 0.00 0.00 4.95
884 889 3.555966 GTTGACATGGATTTAGGAGGGG 58.444 50.000 0.00 0.00 0.00 4.79
885 890 3.053693 TGGTTGACATGGATTTAGGAGGG 60.054 47.826 0.00 0.00 0.00 4.30
886 891 4.235079 TGGTTGACATGGATTTAGGAGG 57.765 45.455 0.00 0.00 0.00 4.30
887 892 5.476599 TGTTTGGTTGACATGGATTTAGGAG 59.523 40.000 0.00 0.00 0.00 3.69
888 893 5.389520 TGTTTGGTTGACATGGATTTAGGA 58.610 37.500 0.00 0.00 0.00 2.94
889 894 5.720371 TGTTTGGTTGACATGGATTTAGG 57.280 39.130 0.00 0.00 0.00 2.69
890 895 6.158598 CCTTGTTTGGTTGACATGGATTTAG 58.841 40.000 0.00 0.00 42.07 1.85
891 896 5.510520 GCCTTGTTTGGTTGACATGGATTTA 60.511 40.000 11.85 0.00 42.07 1.40
892 897 4.743348 GCCTTGTTTGGTTGACATGGATTT 60.743 41.667 11.85 0.00 42.07 2.17
893 898 3.244181 GCCTTGTTTGGTTGACATGGATT 60.244 43.478 11.85 0.00 42.07 3.01
894 899 2.299867 GCCTTGTTTGGTTGACATGGAT 59.700 45.455 11.85 0.00 42.07 3.41
895 900 1.686052 GCCTTGTTTGGTTGACATGGA 59.314 47.619 11.85 0.00 42.07 3.41
896 901 1.602668 CGCCTTGTTTGGTTGACATGG 60.603 52.381 0.00 5.17 42.27 3.66
897 902 1.066908 ACGCCTTGTTTGGTTGACATG 59.933 47.619 0.00 0.00 0.00 3.21
898 903 1.398692 ACGCCTTGTTTGGTTGACAT 58.601 45.000 0.00 0.00 0.00 3.06
899 904 1.178276 AACGCCTTGTTTGGTTGACA 58.822 45.000 0.00 0.00 37.59 3.58
900 905 3.423996 TTAACGCCTTGTTTGGTTGAC 57.576 42.857 0.00 0.00 42.09 3.18
901 906 3.632604 TCATTAACGCCTTGTTTGGTTGA 59.367 39.130 0.00 0.00 42.09 3.18
902 907 3.971150 TCATTAACGCCTTGTTTGGTTG 58.029 40.909 0.00 0.00 42.09 3.77
903 908 4.657436 TTCATTAACGCCTTGTTTGGTT 57.343 36.364 0.00 0.00 42.09 3.67
904 909 4.657436 TTTCATTAACGCCTTGTTTGGT 57.343 36.364 0.00 0.00 42.09 3.67
905 910 5.694006 TGAATTTCATTAACGCCTTGTTTGG 59.306 36.000 0.00 0.00 42.09 3.28
906 911 6.640499 TCTGAATTTCATTAACGCCTTGTTTG 59.360 34.615 0.00 0.00 42.09 2.93
907 912 6.744112 TCTGAATTTCATTAACGCCTTGTTT 58.256 32.000 0.00 0.00 42.09 2.83
908 913 6.325919 TCTGAATTTCATTAACGCCTTGTT 57.674 33.333 0.00 0.00 44.78 2.83
909 914 5.957842 TCTGAATTTCATTAACGCCTTGT 57.042 34.783 0.00 0.00 0.00 3.16
910 915 8.397906 TCTATTCTGAATTTCATTAACGCCTTG 58.602 33.333 8.38 0.00 0.00 3.61
911 916 8.506168 TCTATTCTGAATTTCATTAACGCCTT 57.494 30.769 8.38 0.00 0.00 4.35
912 917 8.682936 ATCTATTCTGAATTTCATTAACGCCT 57.317 30.769 8.38 0.00 0.00 5.52
913 918 7.742089 CGATCTATTCTGAATTTCATTAACGCC 59.258 37.037 8.38 0.00 0.00 5.68
914 919 7.742089 CCGATCTATTCTGAATTTCATTAACGC 59.258 37.037 8.38 0.00 0.00 4.84
915 920 8.978539 TCCGATCTATTCTGAATTTCATTAACG 58.021 33.333 8.38 4.86 0.00 3.18
919 924 9.790344 ATTCTCCGATCTATTCTGAATTTCATT 57.210 29.630 8.38 0.00 0.00 2.57
920 925 9.790344 AATTCTCCGATCTATTCTGAATTTCAT 57.210 29.630 8.38 0.00 31.31 2.57
921 926 9.265901 GAATTCTCCGATCTATTCTGAATTTCA 57.734 33.333 8.38 0.00 34.25 2.69
922 927 8.716909 GGAATTCTCCGATCTATTCTGAATTTC 58.283 37.037 8.38 1.98 34.25 2.17
923 928 8.614469 GGAATTCTCCGATCTATTCTGAATTT 57.386 34.615 8.38 0.00 34.25 1.82
939 944 2.438392 ACCGGAATACCAGGAATTCTCC 59.562 50.000 9.46 1.60 42.81 3.71
940 945 3.494573 GGACCGGAATACCAGGAATTCTC 60.495 52.174 9.46 0.00 34.43 2.87
941 946 2.438392 GGACCGGAATACCAGGAATTCT 59.562 50.000 9.46 0.00 34.43 2.40
942 947 2.438392 AGGACCGGAATACCAGGAATTC 59.562 50.000 9.46 0.00 35.17 2.17
943 948 2.438392 GAGGACCGGAATACCAGGAATT 59.562 50.000 9.46 0.00 35.17 2.17
944 949 2.047830 GAGGACCGGAATACCAGGAAT 58.952 52.381 9.46 0.00 35.17 3.01
945 950 1.273381 TGAGGACCGGAATACCAGGAA 60.273 52.381 9.46 0.00 35.17 3.36
946 951 0.337082 TGAGGACCGGAATACCAGGA 59.663 55.000 9.46 0.00 35.17 3.86
947 952 0.464452 GTGAGGACCGGAATACCAGG 59.536 60.000 9.46 0.00 36.46 4.45
948 953 1.134788 GTGTGAGGACCGGAATACCAG 60.135 57.143 9.46 0.00 35.59 4.00
949 954 0.899720 GTGTGAGGACCGGAATACCA 59.100 55.000 9.46 0.00 35.59 3.25
950 955 0.177373 GGTGTGAGGACCGGAATACC 59.823 60.000 9.46 6.01 0.00 2.73
951 956 0.899720 TGGTGTGAGGACCGGAATAC 59.100 55.000 9.46 0.00 39.07 1.89
952 957 1.276989 GTTGGTGTGAGGACCGGAATA 59.723 52.381 9.46 0.00 39.07 1.75
953 958 0.036306 GTTGGTGTGAGGACCGGAAT 59.964 55.000 9.46 0.00 39.07 3.01
954 959 1.448497 GTTGGTGTGAGGACCGGAA 59.552 57.895 9.46 0.00 39.07 4.30
955 960 2.863346 CGTTGGTGTGAGGACCGGA 61.863 63.158 9.46 0.00 39.07 5.14
956 961 2.357034 CGTTGGTGTGAGGACCGG 60.357 66.667 0.00 0.00 39.07 5.28
957 962 3.041940 GCGTTGGTGTGAGGACCG 61.042 66.667 0.00 0.00 39.07 4.79
958 963 1.961277 CTGCGTTGGTGTGAGGACC 60.961 63.158 0.00 0.00 36.43 4.46
959 964 1.069090 TCTGCGTTGGTGTGAGGAC 59.931 57.895 0.00 0.00 0.00 3.85
960 965 1.069090 GTCTGCGTTGGTGTGAGGA 59.931 57.895 0.00 0.00 0.00 3.71
961 966 2.310233 CGTCTGCGTTGGTGTGAGG 61.310 63.158 0.00 0.00 0.00 3.86
962 967 3.234390 CGTCTGCGTTGGTGTGAG 58.766 61.111 0.00 0.00 0.00 3.51
981 986 2.214376 TGTTTGGATTGGATCGGCTT 57.786 45.000 0.00 0.00 0.00 4.35
1005 1010 5.158494 GCGATTTTATTTTGGTTCCGAGTT 58.842 37.500 0.00 0.00 0.00 3.01
1021 1026 3.784412 CGGTGGCGACGCGATTTT 61.784 61.111 15.93 0.00 43.50 1.82
1055 1066 2.356667 CCTTGGGTGGGAGGAAGC 59.643 66.667 0.00 0.00 34.91 3.86
1359 1391 1.079503 GGGTGATGTTGAGCGTCTTC 58.920 55.000 0.00 0.00 34.29 2.87
1486 1518 4.834892 CGCAAAAGGGCATCGCGG 62.835 66.667 6.13 0.00 42.13 6.46
1524 1556 3.978164 CCAAACCCTGGGGCAAAA 58.022 55.556 18.88 0.00 42.17 2.44
1555 1588 1.225936 CGCATCACGCTTGAAGCAG 60.226 57.895 18.22 12.15 45.03 4.24
1583 1621 4.694233 CAGCACGCCAGGCAGACT 62.694 66.667 13.30 1.24 0.00 3.24
1586 1624 1.434622 CTAATCAGCACGCCAGGCAG 61.435 60.000 13.30 7.00 0.00 4.85
1593 1631 2.286294 CCTCAACATCTAATCAGCACGC 59.714 50.000 0.00 0.00 0.00 5.34
1610 1648 4.930696 TGGATACTATATTCGCCTCCTCA 58.069 43.478 0.00 0.00 37.61 3.86
1611 1649 4.951094 ACTGGATACTATATTCGCCTCCTC 59.049 45.833 0.00 0.00 37.61 3.71
1626 1664 8.238631 GCTAATGCTACTAGAAGTACTGGATAC 58.761 40.741 0.00 0.00 36.03 2.24
1632 1670 5.455872 TGGGCTAATGCTACTAGAAGTACT 58.544 41.667 0.00 0.00 39.59 2.73
1633 1671 5.786264 TGGGCTAATGCTACTAGAAGTAC 57.214 43.478 0.00 0.00 39.59 2.73
1635 1673 5.221742 GGATTGGGCTAATGCTACTAGAAGT 60.222 44.000 7.83 0.00 39.59 3.01
1638 1676 3.583086 GGGATTGGGCTAATGCTACTAGA 59.417 47.826 14.26 0.00 37.29 2.43
1661 1699 6.018669 CCTCCTGAAGATTTTATACGAGCAAC 60.019 42.308 0.00 0.00 0.00 4.17
1675 1713 3.192944 TCAAACCATCCCTCCTGAAGAT 58.807 45.455 0.00 0.00 0.00 2.40
1677 1715 3.285484 CATCAAACCATCCCTCCTGAAG 58.715 50.000 0.00 0.00 0.00 3.02
1679 1717 1.064463 GCATCAAACCATCCCTCCTGA 60.064 52.381 0.00 0.00 0.00 3.86
1685 1723 2.325583 TACTCGCATCAAACCATCCC 57.674 50.000 0.00 0.00 0.00 3.85
1721 1759 1.002773 AGTACCCACGATCACAAACCC 59.997 52.381 0.00 0.00 0.00 4.11
1723 1761 5.172934 TCATAAGTACCCACGATCACAAAC 58.827 41.667 0.00 0.00 0.00 2.93
1852 1893 9.809096 TTCAAAACAACTTCATTACATTGCTTA 57.191 25.926 0.00 0.00 0.00 3.09
1853 1894 8.715191 TTCAAAACAACTTCATTACATTGCTT 57.285 26.923 0.00 0.00 0.00 3.91
1854 1895 8.715191 TTTCAAAACAACTTCATTACATTGCT 57.285 26.923 0.00 0.00 0.00 3.91
1855 1896 8.816144 TCTTTCAAAACAACTTCATTACATTGC 58.184 29.630 0.00 0.00 0.00 3.56
1914 1955 7.234577 ACATTAAGCATTACCTTTTCTGGGAAA 59.765 33.333 0.00 0.00 32.97 3.13
1963 2004 7.750145 GGATACTCCTGCACCTAAGGATACTC 61.750 50.000 0.00 0.00 42.94 2.59
1965 2006 4.221041 GGATACTCCTGCACCTAAGGATAC 59.779 50.000 0.00 0.00 42.94 2.24
1968 2009 2.679082 GGATACTCCTGCACCTAAGGA 58.321 52.381 0.00 0.00 41.66 3.36
2019 2060 9.507329 GAAGATATATATGGTTCAAAGAAGCCA 57.493 33.333 0.00 5.33 35.28 4.75
2055 2096 8.100791 CCCATTTCGGTCTTCCTATTTGATATA 58.899 37.037 0.00 0.00 0.00 0.86
2056 2097 6.942576 CCCATTTCGGTCTTCCTATTTGATAT 59.057 38.462 0.00 0.00 0.00 1.63
2057 2098 6.296026 CCCATTTCGGTCTTCCTATTTGATA 58.704 40.000 0.00 0.00 0.00 2.15
2058 2099 5.133221 CCCATTTCGGTCTTCCTATTTGAT 58.867 41.667 0.00 0.00 0.00 2.57
2060 2101 3.632145 CCCCATTTCGGTCTTCCTATTTG 59.368 47.826 0.00 0.00 0.00 2.32
2082 2123 9.899226 AATCAAGCACTACACTCTAAATTTTTC 57.101 29.630 0.00 0.00 0.00 2.29
2085 2126 8.621532 TCAATCAAGCACTACACTCTAAATTT 57.378 30.769 0.00 0.00 0.00 1.82
2090 2131 8.621532 AATTTTCAATCAAGCACTACACTCTA 57.378 30.769 0.00 0.00 0.00 2.43
2116 2157 4.220602 GTGAACAGCACCTTTTTCCCATAT 59.779 41.667 0.00 0.00 41.78 1.78
2145 2186 0.912486 AGCTGTGTACCCCTGATTCC 59.088 55.000 0.00 0.00 0.00 3.01
2160 2215 3.057736 CCTCAAATTTCAGTGGTCAGCTG 60.058 47.826 7.63 7.63 35.43 4.24
2163 2218 5.972107 ATTCCTCAAATTTCAGTGGTCAG 57.028 39.130 0.00 0.00 0.00 3.51
2164 2219 6.775142 TGTTATTCCTCAAATTTCAGTGGTCA 59.225 34.615 0.00 0.00 0.00 4.02
2243 2298 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2244 2299 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2245 2300 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2256 2311 3.844640 ATGGGTATCATAAAGGGCAACC 58.155 45.455 0.00 0.00 46.87 3.77
2257 2312 7.539034 AAATATGGGTATCATAAAGGGCAAC 57.461 36.000 0.00 0.00 41.23 4.17
2258 2313 7.016072 CCAAAATATGGGTATCATAAAGGGCAA 59.984 37.037 0.00 0.00 46.27 4.52
2259 2314 6.496565 CCAAAATATGGGTATCATAAAGGGCA 59.503 38.462 0.00 0.00 46.27 5.36
2260 2315 6.935167 CCAAAATATGGGTATCATAAAGGGC 58.065 40.000 0.00 0.00 46.27 5.19
2339 2394 9.725019 ACAAGTATGATCTGAACAAGACATTTA 57.275 29.630 0.00 0.00 37.88 1.40
2347 2402 7.661027 TCATGTGAACAAGTATGATCTGAACAA 59.339 33.333 0.00 0.00 30.22 2.83
2456 2511 1.032794 CTGCCAGCCGTGAGATACTA 58.967 55.000 0.00 0.00 0.00 1.82
2460 2515 2.267006 CACTGCCAGCCGTGAGAT 59.733 61.111 8.32 0.00 33.04 2.75
2468 2523 3.677648 CAACCAGCCACTGCCAGC 61.678 66.667 0.00 0.00 38.69 4.85
2501 2556 2.223923 ACAGCATAGAAGCTTCGCCTAG 60.224 50.000 20.43 12.40 43.70 3.02
2551 2606 1.900545 GCCACTAGTCCCACTCCCAC 61.901 65.000 0.00 0.00 0.00 4.61
2552 2607 1.612442 GCCACTAGTCCCACTCCCA 60.612 63.158 0.00 0.00 0.00 4.37
2553 2608 2.368011 GGCCACTAGTCCCACTCCC 61.368 68.421 0.00 0.00 0.00 4.30
2554 2609 0.910088 AAGGCCACTAGTCCCACTCC 60.910 60.000 5.01 0.00 0.00 3.85
2555 2610 1.757699 CTAAGGCCACTAGTCCCACTC 59.242 57.143 5.01 0.00 0.00 3.51
2556 2611 1.361543 TCTAAGGCCACTAGTCCCACT 59.638 52.381 5.01 1.86 0.00 4.00
2560 2615 0.102663 GCGTCTAAGGCCACTAGTCC 59.897 60.000 5.01 0.00 0.00 3.85
2583 2638 5.332355 GCACGTAAATAATAACAGGCTCTCG 60.332 44.000 0.00 0.00 0.00 4.04
2619 2674 2.744202 CACGCAACCATCTAGAAGCTTT 59.256 45.455 0.00 0.00 0.00 3.51
2638 2693 2.972819 GCTCCTCCCACTTCCCCAC 61.973 68.421 0.00 0.00 0.00 4.61
2673 2728 8.860088 ACACCTATCCCTTCAAATTATATTTGC 58.140 33.333 7.16 0.00 0.00 3.68
2677 2732 8.949421 ACTCACACCTATCCCTTCAAATTATAT 58.051 33.333 0.00 0.00 0.00 0.86
2696 2751 8.718102 AACACCATATGAATTACTACTCACAC 57.282 34.615 3.65 0.00 0.00 3.82
2765 2820 9.586435 CAATCTCAATAATTAAGTTGAAACCCC 57.414 33.333 3.72 0.00 34.26 4.95
2797 2864 4.462483 TGGATTTGAAGCAAACCATCCTAC 59.538 41.667 10.57 0.00 36.13 3.18
2852 2919 6.998673 AGTTAGTTGTCAAGCTGACCTATTTT 59.001 34.615 11.99 0.00 46.40 1.82
2972 3039 9.396022 CCTTGCAAGAGAAATTAACCTTATAGA 57.604 33.333 28.05 0.00 0.00 1.98
2973 3040 8.131731 GCCTTGCAAGAGAAATTAACCTTATAG 58.868 37.037 28.05 5.24 0.00 1.31
2974 3041 7.834181 AGCCTTGCAAGAGAAATTAACCTTATA 59.166 33.333 28.05 0.00 0.00 0.98
2975 3042 6.665248 AGCCTTGCAAGAGAAATTAACCTTAT 59.335 34.615 28.05 0.00 0.00 1.73
2976 3043 6.010219 AGCCTTGCAAGAGAAATTAACCTTA 58.990 36.000 28.05 0.00 0.00 2.69
2977 3044 4.835056 AGCCTTGCAAGAGAAATTAACCTT 59.165 37.500 28.05 0.00 0.00 3.50
2978 3045 4.219288 CAGCCTTGCAAGAGAAATTAACCT 59.781 41.667 28.05 5.10 0.00 3.50
2979 3046 4.488879 CAGCCTTGCAAGAGAAATTAACC 58.511 43.478 28.05 3.02 0.00 2.85
3088 3155 4.592351 TGAATGGTTGATGGTGGAAAACAT 59.408 37.500 0.00 0.00 32.67 2.71
3089 3156 3.963374 TGAATGGTTGATGGTGGAAAACA 59.037 39.130 0.00 0.00 0.00 2.83
3103 3170 3.117776 TCCTGCTAGCATGATGAATGGTT 60.118 43.478 19.72 0.00 44.67 3.67
3114 3181 2.507058 TCTCCATGTTTCCTGCTAGCAT 59.493 45.455 19.72 0.00 0.00 3.79
3118 3185 2.237143 CACCTCTCCATGTTTCCTGCTA 59.763 50.000 0.00 0.00 0.00 3.49
3121 3188 2.430465 CACACCTCTCCATGTTTCCTG 58.570 52.381 0.00 0.00 0.00 3.86
3137 3204 3.888930 TCATGGTTTTTCCTCTTCCACAC 59.111 43.478 0.00 0.00 37.07 3.82
3154 3221 2.159627 GGCACAACTAGTTCGTTCATGG 59.840 50.000 4.77 0.00 0.00 3.66
3167 3235 4.576463 CACAAGAACTTCTTAGGCACAACT 59.424 41.667 3.64 0.00 33.78 3.16
3218 3286 9.599322 GCAATATTGATTTCCGTAGTTTATGAG 57.401 33.333 19.73 0.00 0.00 2.90
3228 3296 7.147915 ACCAATAACTGCAATATTGATTTCCGT 60.148 33.333 23.63 13.88 41.25 4.69
3229 3297 7.202526 ACCAATAACTGCAATATTGATTTCCG 58.797 34.615 23.63 13.44 41.25 4.30
3282 3350 4.035324 CCAGCATGCTAACTTCTGAATGAG 59.965 45.833 22.19 2.17 31.97 2.90
3325 3393 8.592105 TTCAACTTAAAAATGAAGCATGGAAG 57.408 30.769 0.00 0.00 0.00 3.46
3361 3429 2.290641 CAGTCTGTTAAACAGCACCACC 59.709 50.000 0.00 0.00 45.54 4.61
3608 3697 8.914654 CATGTTTAAATGATTATGGCAATACGG 58.085 33.333 0.00 0.00 0.00 4.02
3674 3764 8.423906 ACTAGGATCTAACTTCTTTCTTGACA 57.576 34.615 0.00 0.00 0.00 3.58
3735 3825 1.068352 AAGGAAGGACCAACAGGCCT 61.068 55.000 0.00 0.00 42.04 5.19
3736 3826 0.895559 CAAGGAAGGACCAACAGGCC 60.896 60.000 0.00 0.00 42.04 5.19
3813 3904 1.134965 CCTAGTTCGGTGCTGGAGAAG 60.135 57.143 0.00 0.00 0.00 2.85
3845 3937 6.721704 ACATCTTCATAGACAGTATGAGCA 57.278 37.500 0.00 0.00 41.26 4.26
4140 4233 2.790433 TCTGTTATTTGGACCTGTGGC 58.210 47.619 0.00 0.00 0.00 5.01
4186 4280 3.460857 ACACGAGAGGGATATTTGCTC 57.539 47.619 0.00 0.00 38.45 4.26
4216 4310 5.999205 TTATGAATGGTTGATTGGCAGTT 57.001 34.783 0.00 0.00 0.00 3.16
4217 4311 6.549433 AATTATGAATGGTTGATTGGCAGT 57.451 33.333 0.00 0.00 0.00 4.40
4278 4388 8.352942 GGTCCAATTTATCTTACCACATCATTC 58.647 37.037 0.00 0.00 0.00 2.67
4300 4410 4.340617 TGGTTGACTAAAATGGATGGTCC 58.659 43.478 0.00 0.00 36.96 4.46
4366 4476 6.588204 ACAGTACAACACCAATTTCACTAGA 58.412 36.000 0.00 0.00 0.00 2.43
4367 4477 6.861065 ACAGTACAACACCAATTTCACTAG 57.139 37.500 0.00 0.00 0.00 2.57
4380 4490 8.136800 TCGAGTTTATCTTACAACAGTACAACA 58.863 33.333 0.00 0.00 0.00 3.33
4381 4491 8.423215 GTCGAGTTTATCTTACAACAGTACAAC 58.577 37.037 0.00 0.00 0.00 3.32
4382 4492 7.596248 GGTCGAGTTTATCTTACAACAGTACAA 59.404 37.037 0.00 0.00 0.00 2.41
4383 4493 7.086376 GGTCGAGTTTATCTTACAACAGTACA 58.914 38.462 0.00 0.00 0.00 2.90
4384 4494 7.086376 TGGTCGAGTTTATCTTACAACAGTAC 58.914 38.462 0.00 0.00 0.00 2.73
4385 4495 7.218228 TGGTCGAGTTTATCTTACAACAGTA 57.782 36.000 0.00 0.00 0.00 2.74
4386 4496 6.092955 TGGTCGAGTTTATCTTACAACAGT 57.907 37.500 0.00 0.00 0.00 3.55
4387 4497 5.062308 GCTGGTCGAGTTTATCTTACAACAG 59.938 44.000 0.00 0.00 0.00 3.16
4391 4501 3.767673 AGGCTGGTCGAGTTTATCTTACA 59.232 43.478 0.00 0.00 0.00 2.41
4417 4527 5.070714 ACAACACATACCCTGTACTGTAACA 59.929 40.000 0.00 0.00 35.91 2.41
4488 4598 7.518731 TGCAATGAGAAAACTAACAAACAAC 57.481 32.000 0.00 0.00 0.00 3.32
4494 4604 6.767902 AGAGTCTTGCAATGAGAAAACTAACA 59.232 34.615 0.00 0.00 0.00 2.41
4514 4624 5.241662 GTTATCCATAGCATTCCCAGAGTC 58.758 45.833 0.00 0.00 0.00 3.36
4555 4666 6.825610 AGCCAAGTTTATTGTTGGAAAATGA 58.174 32.000 5.28 0.00 45.35 2.57
4626 4737 7.666388 ACAGATGACTAACTTGACTGTAGTACT 59.334 37.037 0.00 0.00 35.77 2.73
4635 4746 9.694137 AACTAAGTAACAGATGACTAACTTGAC 57.306 33.333 0.00 0.00 30.77 3.18
4741 4853 6.639686 TGTACAGAAAAGAGTTACAGTTAGCG 59.360 38.462 0.00 0.00 0.00 4.26
4754 4866 5.163405 ACACTGAGAAGCTGTACAGAAAAGA 60.163 40.000 27.08 4.11 34.88 2.52
4844 4956 3.933332 GTGAAGGAAATGAGTCGGTTAGG 59.067 47.826 0.00 0.00 0.00 2.69
4853 4965 5.244626 ACCAAATCCAAGTGAAGGAAATGAG 59.755 40.000 0.00 0.00 38.93 2.90
4949 5061 1.815817 GAACATTGTTTGGGCCGGCT 61.816 55.000 28.56 0.00 0.00 5.52
4994 5106 0.107654 CTCCGACTCCCATTGAACCC 60.108 60.000 0.00 0.00 0.00 4.11
5021 5133 3.348554 ATTGCTGATCCCTGCGGCA 62.349 57.895 1.29 1.29 45.24 5.69
5035 5147 4.120331 GGGTGACTGCGCCATTGC 62.120 66.667 4.18 0.00 46.75 3.56
5122 5234 3.142174 GGCCTAAGAGTAACATGCATCC 58.858 50.000 0.00 0.00 0.00 3.51
5137 5249 5.566826 GCAGTGACATATTCGATAGGCCTAA 60.567 44.000 18.42 1.48 0.00 2.69
5343 5464 6.237942 CGAAGTCATGCAGGTAACAGAAATAG 60.238 42.308 0.00 0.00 41.41 1.73
5344 5465 5.580691 CGAAGTCATGCAGGTAACAGAAATA 59.419 40.000 0.00 0.00 41.41 1.40
5345 5466 4.393062 CGAAGTCATGCAGGTAACAGAAAT 59.607 41.667 0.00 0.00 41.41 2.17
5351 5472 1.338769 ACCCGAAGTCATGCAGGTAAC 60.339 52.381 0.00 0.00 0.00 2.50
5382 5503 1.075674 TGCCACCAACCACAACCAT 60.076 52.632 0.00 0.00 0.00 3.55
5394 5515 2.989422 GTACAGAAACATGTGCCACC 57.011 50.000 0.00 0.00 34.56 4.61
5401 5522 6.500684 AAGTTATGCAGGTACAGAAACATG 57.499 37.500 0.00 0.00 34.37 3.21
5484 5607 7.461182 AAATTAAAATTGTCACCTGATCCGA 57.539 32.000 0.00 0.00 0.00 4.55
5515 5638 3.513680 AACATTATCAGGCGTGTCGTA 57.486 42.857 6.26 0.00 0.00 3.43
5517 5640 2.930040 AGAAACATTATCAGGCGTGTCG 59.070 45.455 6.26 0.00 0.00 4.35
5541 5664 1.816074 TGACAAATAGGGTTGACGCC 58.184 50.000 0.00 0.00 32.59 5.68
5542 5665 2.030457 CGATGACAAATAGGGTTGACGC 59.970 50.000 0.00 0.00 32.59 5.19
5544 5667 2.354821 GGCGATGACAAATAGGGTTGAC 59.645 50.000 0.00 0.00 32.59 3.18
5545 5668 2.026729 TGGCGATGACAAATAGGGTTGA 60.027 45.455 0.00 0.00 32.59 3.18
5546 5669 2.364632 TGGCGATGACAAATAGGGTTG 58.635 47.619 0.00 0.00 34.52 3.77
5548 5671 2.806745 CGATGGCGATGACAAATAGGGT 60.807 50.000 0.00 0.00 40.82 4.34
5550 5673 2.754472 TCGATGGCGATGACAAATAGG 58.246 47.619 0.00 0.00 42.51 2.57
5564 5885 1.064060 GTTTTTGGAGCGGATCGATGG 59.936 52.381 0.54 0.00 0.00 3.51
5571 5892 2.357637 CTCAACAAGTTTTTGGAGCGGA 59.642 45.455 2.06 0.00 38.66 5.54
5647 5968 5.432157 GCGTATAAAGATGTTCCATGTTCG 58.568 41.667 0.00 0.00 0.00 3.95
5648 5969 5.432157 CGCGTATAAAGATGTTCCATGTTC 58.568 41.667 0.00 0.00 0.00 3.18
5649 5970 4.272504 CCGCGTATAAAGATGTTCCATGTT 59.727 41.667 4.92 0.00 0.00 2.71
5650 5971 3.807622 CCGCGTATAAAGATGTTCCATGT 59.192 43.478 4.92 0.00 0.00 3.21
5651 5972 4.055360 TCCGCGTATAAAGATGTTCCATG 58.945 43.478 4.92 0.00 0.00 3.66
5652 5973 4.330944 TCCGCGTATAAAGATGTTCCAT 57.669 40.909 4.92 0.00 0.00 3.41
5653 5974 3.804786 TCCGCGTATAAAGATGTTCCA 57.195 42.857 4.92 0.00 0.00 3.53
5654 5975 4.151867 GGAATCCGCGTATAAAGATGTTCC 59.848 45.833 4.92 1.59 0.00 3.62
5659 5980 4.307432 CTGTGGAATCCGCGTATAAAGAT 58.693 43.478 8.45 0.00 36.72 2.40
5670 5991 2.671070 ACAGGGCTGTGGAATCCG 59.329 61.111 0.00 0.00 43.11 4.18
5686 6007 2.265467 ATACGGGGGTCATGGTGCAC 62.265 60.000 8.80 8.80 0.00 4.57
5689 6010 1.343465 GTAGATACGGGGGTCATGGTG 59.657 57.143 0.00 0.00 0.00 4.17
5690 6011 1.713297 GTAGATACGGGGGTCATGGT 58.287 55.000 0.00 0.00 0.00 3.55
5692 6013 0.974383 GGGTAGATACGGGGGTCATG 59.026 60.000 0.00 0.00 0.00 3.07
5693 6014 0.564171 TGGGTAGATACGGGGGTCAT 59.436 55.000 0.00 0.00 0.00 3.06
5694 6015 0.564171 ATGGGTAGATACGGGGGTCA 59.436 55.000 0.00 0.00 0.00 4.02
5695 6016 1.264295 GATGGGTAGATACGGGGGTC 58.736 60.000 0.00 0.00 0.00 4.46
5701 6390 0.109873 GACCGCGATGGGTAGATACG 60.110 60.000 8.23 0.00 44.64 3.06
5717 6406 2.991540 GGCAAAGGGGCAGTGACC 60.992 66.667 6.41 6.41 42.77 4.02
5720 6409 1.531365 TGAAGGCAAAGGGGCAGTG 60.531 57.895 0.00 0.00 46.44 3.66
5722 6411 2.278330 GGTGAAGGCAAAGGGGCAG 61.278 63.158 0.00 0.00 46.44 4.85
5758 6447 5.775195 ACTCTTTGGACCCTGAAATTAAAGG 59.225 40.000 0.00 0.20 0.00 3.11
5768 6457 1.237285 CCGCAACTCTTTGGACCCTG 61.237 60.000 0.00 0.00 32.81 4.45
5773 6462 2.282180 GCCCCGCAACTCTTTGGA 60.282 61.111 0.00 0.00 32.81 3.53
5777 6466 4.351054 CCTGGCCCCGCAACTCTT 62.351 66.667 0.00 0.00 0.00 2.85
5790 6479 1.234615 AATGAACGGTTGCGTCCTGG 61.235 55.000 0.00 0.00 0.00 4.45
5791 6480 0.110238 CAATGAACGGTTGCGTCCTG 60.110 55.000 0.00 0.00 0.00 3.86
5793 6482 0.385473 CACAATGAACGGTTGCGTCC 60.385 55.000 0.00 0.00 0.00 4.79
5794 6483 0.996727 GCACAATGAACGGTTGCGTC 60.997 55.000 0.00 0.00 0.00 5.19
5795 6484 1.008995 GCACAATGAACGGTTGCGT 60.009 52.632 0.00 0.00 0.00 5.24
5796 6485 0.593518 TTGCACAATGAACGGTTGCG 60.594 50.000 0.00 0.00 0.00 4.85
5837 6526 9.228949 GCAAAACTGAAGATCCTGATGATATAT 57.771 33.333 0.00 0.00 32.41 0.86
5838 6527 8.212995 TGCAAAACTGAAGATCCTGATGATATA 58.787 33.333 0.00 0.00 32.41 0.86
5905 6594 6.525629 AGGATTGTCTAATTAGGGTTGATCG 58.474 40.000 12.54 0.00 0.00 3.69
5941 6630 3.383761 CAAAGGACTGGTGTGCAATTTC 58.616 45.455 0.00 0.00 36.96 2.17
5947 6636 1.398692 TTTCCAAAGGACTGGTGTGC 58.601 50.000 0.00 0.00 37.74 4.57
5948 6637 4.099266 TCAAATTTCCAAAGGACTGGTGTG 59.901 41.667 0.00 0.00 37.74 3.82
5962 6651 5.579119 ACAAGGAAAACAACGTCAAATTTCC 59.421 36.000 19.38 19.38 45.96 3.13
5963 6652 6.465978 CACAAGGAAAACAACGTCAAATTTC 58.534 36.000 0.00 0.00 0.00 2.17
5967 6656 3.246619 GCACAAGGAAAACAACGTCAAA 58.753 40.909 0.00 0.00 0.00 2.69
5985 6674 2.280119 TGTCGCCAGTGAGTGCAC 60.280 61.111 9.40 9.40 45.49 4.57
6053 6742 3.430895 CGAAATGTGCTTGGTACTACGTT 59.569 43.478 0.00 0.00 0.00 3.99
6056 6745 3.062234 GCTCGAAATGTGCTTGGTACTAC 59.938 47.826 0.00 0.00 34.28 2.73
6057 6746 3.056107 AGCTCGAAATGTGCTTGGTACTA 60.056 43.478 0.00 0.00 44.69 1.82
6058 6747 2.076863 GCTCGAAATGTGCTTGGTACT 58.923 47.619 0.00 0.00 34.28 2.73
6077 6766 1.556911 TCAGATGGTCTCTTTCCCAGC 59.443 52.381 0.00 0.00 37.40 4.85
6093 6782 6.620877 AGTACCAACATATCCTTGTTCAGA 57.379 37.500 0.00 0.00 37.73 3.27
6095 6784 7.490657 AGTAGTACCAACATATCCTTGTTCA 57.509 36.000 0.00 0.00 37.73 3.18
6112 6801 3.629142 ACCTGGGATGCAAAGTAGTAC 57.371 47.619 0.00 0.00 0.00 2.73
6113 6802 3.453353 GGTACCTGGGATGCAAAGTAGTA 59.547 47.826 4.06 0.00 0.00 1.82
6114 6803 2.238898 GGTACCTGGGATGCAAAGTAGT 59.761 50.000 4.06 0.00 0.00 2.73
6115 6804 2.238646 TGGTACCTGGGATGCAAAGTAG 59.761 50.000 14.36 0.00 0.00 2.57
6142 6831 4.165180 TCCAAAATATGACCTGATTCCGGA 59.835 41.667 0.00 0.00 0.00 5.14
6144 6833 5.368145 TCTCCAAAATATGACCTGATTCCG 58.632 41.667 0.00 0.00 0.00 4.30
6163 6853 6.691508 AGCCTGAAAACAATGTAAATTCTCC 58.308 36.000 7.61 0.00 0.00 3.71
6173 6863 2.061028 GCGGAAAGCCTGAAAACAATG 58.939 47.619 0.00 0.00 40.81 2.82
6174 6864 2.438868 GCGGAAAGCCTGAAAACAAT 57.561 45.000 0.00 0.00 40.81 2.71
6216 6911 7.942341 AGAGGGAGTACATTTTTGTGACAAATA 59.058 33.333 11.97 7.63 0.00 1.40
6217 6912 6.777580 AGAGGGAGTACATTTTTGTGACAAAT 59.222 34.615 11.97 0.00 0.00 2.32
6218 6913 6.039270 CAGAGGGAGTACATTTTTGTGACAAA 59.961 38.462 6.66 6.66 0.00 2.83
6224 6919 5.941788 AGAACAGAGGGAGTACATTTTTGT 58.058 37.500 0.00 0.00 0.00 2.83
6234 6929 9.495382 AAGACTTATATTTAGAACAGAGGGAGT 57.505 33.333 0.00 0.00 0.00 3.85
6268 6963 9.772973 TGCTCCGTATGTAGTTTATAATGAAAT 57.227 29.630 0.00 0.00 0.00 2.17
6269 6964 9.602568 TTGCTCCGTATGTAGTTTATAATGAAA 57.397 29.630 0.00 0.00 0.00 2.69
6270 6965 9.602568 TTTGCTCCGTATGTAGTTTATAATGAA 57.397 29.630 0.00 0.00 0.00 2.57
6271 6966 9.602568 TTTTGCTCCGTATGTAGTTTATAATGA 57.397 29.630 0.00 0.00 0.00 2.57
6276 6971 9.609346 ACTTATTTTGCTCCGTATGTAGTTTAT 57.391 29.630 0.00 0.00 0.00 1.40
6278 6973 7.916914 ACTTATTTTGCTCCGTATGTAGTTT 57.083 32.000 0.00 0.00 0.00 2.66
6279 6974 9.439500 TTTACTTATTTTGCTCCGTATGTAGTT 57.561 29.630 0.00 0.00 0.00 2.24
6280 6975 9.609346 ATTTACTTATTTTGCTCCGTATGTAGT 57.391 29.630 0.00 0.00 0.00 2.73
6282 6977 9.826574 AGATTTACTTATTTTGCTCCGTATGTA 57.173 29.630 0.00 0.00 0.00 2.29
6283 6978 8.732746 AGATTTACTTATTTTGCTCCGTATGT 57.267 30.769 0.00 0.00 0.00 2.29
6285 6980 9.826574 TGTAGATTTACTTATTTTGCTCCGTAT 57.173 29.630 0.00 0.00 0.00 3.06
6286 6981 9.826574 ATGTAGATTTACTTATTTTGCTCCGTA 57.173 29.630 0.00 0.00 0.00 4.02
6287 6982 8.732746 ATGTAGATTTACTTATTTTGCTCCGT 57.267 30.769 0.00 0.00 0.00 4.69
6288 6983 9.651718 GAATGTAGATTTACTTATTTTGCTCCG 57.348 33.333 0.00 0.00 0.00 4.63
6328 7023 8.570488 CCACTACAAACTACATACGGATGTATA 58.430 37.037 20.64 9.08 45.42 1.47
6329 7024 7.286087 TCCACTACAAACTACATACGGATGTAT 59.714 37.037 20.64 8.38 45.42 2.29
6330 7025 6.602803 TCCACTACAAACTACATACGGATGTA 59.397 38.462 19.32 19.32 44.77 2.29
6332 7027 5.898174 TCCACTACAAACTACATACGGATG 58.102 41.667 5.94 5.94 39.16 3.51
6333 7028 6.534475 TTCCACTACAAACTACATACGGAT 57.466 37.500 0.00 0.00 0.00 4.18
6334 7029 5.981088 TTCCACTACAAACTACATACGGA 57.019 39.130 0.00 0.00 0.00 4.69
6335 7030 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
6336 7031 8.475331 AAAGATTCCACTACAAACTACATACG 57.525 34.615 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.