Multiple sequence alignment - TraesCS6A01G282300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G282300 chr6A 100.000 5628 0 0 1 5628 512340787 512346414 0.000000e+00 10394.0
1 TraesCS6A01G282300 chr6D 94.173 4119 164 27 774 4859 371299909 371303984 0.000000e+00 6207.0
2 TraesCS6A01G282300 chr6D 90.995 633 33 7 4996 5619 371304103 371304720 0.000000e+00 832.0
3 TraesCS6A01G282300 chr6B 94.718 2575 104 15 849 3409 556490111 556492667 0.000000e+00 3973.0
4 TraesCS6A01G282300 chr6B 93.050 2072 79 25 3401 5441 556494358 556496395 0.000000e+00 2968.0
5 TraesCS6A01G282300 chr6B 87.500 144 14 4 5487 5628 556496390 556496531 4.510000e-36 163.0
6 TraesCS6A01G282300 chr6B 88.462 104 11 1 5497 5600 18746711 18746609 2.130000e-24 124.0
7 TraesCS6A01G282300 chr6B 76.423 246 47 4 543 777 189647935 189648180 7.660000e-24 122.0
8 TraesCS6A01G282300 chr5D 75.740 338 52 12 464 776 547612652 547612984 5.880000e-30 143.0
9 TraesCS6A01G282300 chr5D 88.462 104 11 1 5497 5600 6261552 6261450 2.130000e-24 124.0
10 TraesCS6A01G282300 chr7A 82.143 168 24 1 609 776 100065134 100065295 7.600000e-29 139.0
11 TraesCS6A01G282300 chrUn 75.371 337 54 9 464 776 68511179 68511510 9.840000e-28 135.0
12 TraesCS6A01G282300 chr7B 88.288 111 11 2 5490 5600 137678211 137678319 1.270000e-26 132.0
13 TraesCS6A01G282300 chr3D 87.387 111 13 1 5490 5600 80426055 80426164 5.920000e-25 126.0
14 TraesCS6A01G282300 chr3D 85.000 120 16 2 609 727 463181487 463181369 2.750000e-23 121.0
15 TraesCS6A01G282300 chr3B 87.387 111 13 1 5490 5600 101925964 101926073 5.920000e-25 126.0
16 TraesCS6A01G282300 chr2A 87.963 108 12 1 5493 5600 610228116 610228010 5.920000e-25 126.0
17 TraesCS6A01G282300 chr2A 82.692 104 18 0 623 726 159195670 159195773 6.000000e-15 93.5
18 TraesCS6A01G282300 chr1D 87.387 111 13 1 5490 5600 254448384 254448493 5.920000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G282300 chr6A 512340787 512346414 5627 False 10394.0 10394 100.000 1 5628 1 chr6A.!!$F1 5627
1 TraesCS6A01G282300 chr6D 371299909 371304720 4811 False 3519.5 6207 92.584 774 5619 2 chr6D.!!$F1 4845
2 TraesCS6A01G282300 chr6B 556490111 556496531 6420 False 2368.0 3973 91.756 849 5628 3 chr6B.!!$F2 4779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.033228 CCAGATCTGACCGCTCCATC 59.967 60.000 24.62 0.00 0.00 3.51 F
444 445 0.176680 TCTCTCTGCCTCGAATTGCC 59.823 55.000 0.00 0.00 0.00 4.52 F
790 791 0.245539 TCTAAGCGGACCGAACCAAG 59.754 55.000 20.50 6.93 0.00 3.61 F
2433 2459 0.312102 GCTTGCAAGGAAGTGACCAC 59.688 55.000 27.10 3.20 0.00 4.16 F
2515 2542 0.175302 CTCTGTCTGGCCTAGCAGTG 59.825 60.000 3.32 6.50 34.35 3.66 F
3638 5373 1.000843 GCAGTTTGGCTTCCGGAATTT 59.999 47.619 19.21 0.00 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1712 0.173708 AAATCCCTCGCTCGACACTC 59.826 55.000 0.00 0.00 0.00 3.51 R
1990 2005 1.277273 CCACTCTTCTCCTGCATGACA 59.723 52.381 0.00 0.00 0.00 3.58 R
2495 2522 1.143620 CTGCTAGGCCAGACAGAGC 59.856 63.158 5.01 4.12 34.77 4.09 R
3888 5624 1.144093 TGCCCTTTTCCCTCGAAGAAA 59.856 47.619 6.26 6.26 34.09 2.52 R
4122 5858 1.956477 ACCTCATTGTTTGTGACAGGC 59.044 47.619 0.00 0.00 39.94 4.85 R
5376 7177 0.179156 CCACTTTTATGCTGCCGCTG 60.179 55.000 0.70 0.00 36.97 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.349973 ACTTCACAGTGCAAATATACATCG 57.650 37.500 0.00 0.00 0.00 3.84
31 32 5.874810 ACTTCACAGTGCAAATATACATCGT 59.125 36.000 0.00 0.00 0.00 3.73
32 33 6.371548 ACTTCACAGTGCAAATATACATCGTT 59.628 34.615 0.00 0.00 0.00 3.85
33 34 6.344572 TCACAGTGCAAATATACATCGTTC 57.655 37.500 0.00 0.00 0.00 3.95
34 35 5.872070 TCACAGTGCAAATATACATCGTTCA 59.128 36.000 0.00 0.00 0.00 3.18
35 36 5.959527 CACAGTGCAAATATACATCGTTCAC 59.040 40.000 0.00 0.00 0.00 3.18
36 37 5.064707 ACAGTGCAAATATACATCGTTCACC 59.935 40.000 0.00 0.00 0.00 4.02
37 38 5.294306 CAGTGCAAATATACATCGTTCACCT 59.706 40.000 0.00 0.00 0.00 4.00
38 39 6.478673 CAGTGCAAATATACATCGTTCACCTA 59.521 38.462 0.00 0.00 0.00 3.08
39 40 7.171508 CAGTGCAAATATACATCGTTCACCTAT 59.828 37.037 0.00 0.00 0.00 2.57
40 41 8.364894 AGTGCAAATATACATCGTTCACCTATA 58.635 33.333 0.00 0.00 0.00 1.31
41 42 8.648097 GTGCAAATATACATCGTTCACCTATAG 58.352 37.037 0.00 0.00 0.00 1.31
42 43 7.817478 TGCAAATATACATCGTTCACCTATAGG 59.183 37.037 17.73 17.73 42.17 2.57
43 44 8.033038 GCAAATATACATCGTTCACCTATAGGA 58.967 37.037 26.01 0.18 38.94 2.94
44 45 9.923143 CAAATATACATCGTTCACCTATAGGAA 57.077 33.333 26.01 7.31 38.94 3.36
48 49 6.235231 ACATCGTTCACCTATAGGAAATGT 57.765 37.500 26.01 18.39 38.94 2.71
49 50 7.356089 ACATCGTTCACCTATAGGAAATGTA 57.644 36.000 26.01 12.99 38.94 2.29
50 51 7.788026 ACATCGTTCACCTATAGGAAATGTAA 58.212 34.615 26.01 9.47 38.94 2.41
51 52 8.262227 ACATCGTTCACCTATAGGAAATGTAAA 58.738 33.333 26.01 8.87 38.94 2.01
52 53 9.104965 CATCGTTCACCTATAGGAAATGTAAAA 57.895 33.333 26.01 8.57 38.94 1.52
53 54 9.675464 ATCGTTCACCTATAGGAAATGTAAAAA 57.325 29.630 26.01 8.26 38.94 1.94
54 55 8.938906 TCGTTCACCTATAGGAAATGTAAAAAC 58.061 33.333 26.01 11.57 38.94 2.43
55 56 8.723311 CGTTCACCTATAGGAAATGTAAAAACA 58.277 33.333 26.01 0.00 38.94 2.83
62 63 9.769093 CTATAGGAAATGTAAAAACAAAGACCG 57.231 33.333 0.00 0.00 0.00 4.79
63 64 5.286438 AGGAAATGTAAAAACAAAGACCGC 58.714 37.500 0.00 0.00 0.00 5.68
64 65 5.044558 GGAAATGTAAAAACAAAGACCGCA 58.955 37.500 0.00 0.00 0.00 5.69
65 66 5.051307 GGAAATGTAAAAACAAAGACCGCAC 60.051 40.000 0.00 0.00 0.00 5.34
66 67 3.054276 TGTAAAAACAAAGACCGCACG 57.946 42.857 0.00 0.00 0.00 5.34
67 68 1.776897 GTAAAAACAAAGACCGCACGC 59.223 47.619 0.00 0.00 0.00 5.34
68 69 0.454196 AAAAACAAAGACCGCACGCT 59.546 45.000 0.00 0.00 0.00 5.07
69 70 1.301423 AAAACAAAGACCGCACGCTA 58.699 45.000 0.00 0.00 0.00 4.26
70 71 1.301423 AAACAAAGACCGCACGCTAA 58.699 45.000 0.00 0.00 0.00 3.09
71 72 0.584876 AACAAAGACCGCACGCTAAC 59.415 50.000 0.00 0.00 0.00 2.34
72 73 0.249741 ACAAAGACCGCACGCTAACT 60.250 50.000 0.00 0.00 0.00 2.24
73 74 0.163788 CAAAGACCGCACGCTAACTG 59.836 55.000 0.00 0.00 0.00 3.16
74 75 0.249741 AAAGACCGCACGCTAACTGT 60.250 50.000 0.00 0.00 0.00 3.55
75 76 0.666577 AAGACCGCACGCTAACTGTC 60.667 55.000 0.00 0.00 0.00 3.51
76 77 2.048503 ACCGCACGCTAACTGTCC 60.049 61.111 0.00 0.00 0.00 4.02
77 78 2.048597 CCGCACGCTAACTGTCCA 60.049 61.111 0.00 0.00 0.00 4.02
78 79 1.666553 CCGCACGCTAACTGTCCAA 60.667 57.895 0.00 0.00 0.00 3.53
79 80 1.019278 CCGCACGCTAACTGTCCAAT 61.019 55.000 0.00 0.00 0.00 3.16
80 81 1.635844 CGCACGCTAACTGTCCAATA 58.364 50.000 0.00 0.00 0.00 1.90
81 82 1.588404 CGCACGCTAACTGTCCAATAG 59.412 52.381 0.00 0.00 0.00 1.73
82 83 2.734175 CGCACGCTAACTGTCCAATAGA 60.734 50.000 0.00 0.00 0.00 1.98
83 84 3.458189 GCACGCTAACTGTCCAATAGAT 58.542 45.455 0.00 0.00 0.00 1.98
84 85 3.871594 GCACGCTAACTGTCCAATAGATT 59.128 43.478 0.00 0.00 0.00 2.40
85 86 4.332819 GCACGCTAACTGTCCAATAGATTT 59.667 41.667 0.00 0.00 0.00 2.17
86 87 5.502544 GCACGCTAACTGTCCAATAGATTTC 60.503 44.000 0.00 0.00 0.00 2.17
87 88 5.580691 CACGCTAACTGTCCAATAGATTTCA 59.419 40.000 0.00 0.00 0.00 2.69
88 89 6.258727 CACGCTAACTGTCCAATAGATTTCAT 59.741 38.462 0.00 0.00 0.00 2.57
89 90 6.823689 ACGCTAACTGTCCAATAGATTTCATT 59.176 34.615 0.00 0.00 0.00 2.57
90 91 7.336931 ACGCTAACTGTCCAATAGATTTCATTT 59.663 33.333 0.00 0.00 0.00 2.32
91 92 8.184192 CGCTAACTGTCCAATAGATTTCATTTT 58.816 33.333 0.00 0.00 0.00 1.82
92 93 9.860898 GCTAACTGTCCAATAGATTTCATTTTT 57.139 29.630 0.00 0.00 0.00 1.94
104 105 7.177498 AGATTTCATTTTTCTTTTGTTCGCC 57.823 32.000 0.00 0.00 0.00 5.54
105 106 5.726729 TTTCATTTTTCTTTTGTTCGCCC 57.273 34.783 0.00 0.00 0.00 6.13
106 107 3.376540 TCATTTTTCTTTTGTTCGCCCG 58.623 40.909 0.00 0.00 0.00 6.13
107 108 1.562017 TTTTTCTTTTGTTCGCCCGC 58.438 45.000 0.00 0.00 0.00 6.13
108 109 0.249114 TTTTCTTTTGTTCGCCCGCC 60.249 50.000 0.00 0.00 0.00 6.13
109 110 2.077821 TTTCTTTTGTTCGCCCGCCC 62.078 55.000 0.00 0.00 0.00 6.13
110 111 4.398598 CTTTTGTTCGCCCGCCCG 62.399 66.667 0.00 0.00 0.00 6.13
111 112 4.931633 TTTTGTTCGCCCGCCCGA 62.932 61.111 0.00 0.00 35.09 5.14
145 146 3.519930 GACCTCGTCGCCTCCTCC 61.520 72.222 0.00 0.00 0.00 4.30
167 168 2.895865 CAGCCGCTCATCTGCTGG 60.896 66.667 2.89 0.00 45.61 4.85
168 169 4.172512 AGCCGCTCATCTGCTGGG 62.173 66.667 0.00 0.00 33.81 4.45
172 173 3.806667 GCTCATCTGCTGGGGCCT 61.807 66.667 0.84 0.00 37.74 5.19
173 174 3.004951 CTCATCTGCTGGGGCCTT 58.995 61.111 0.84 0.00 37.74 4.35
174 175 1.153005 CTCATCTGCTGGGGCCTTC 60.153 63.158 0.84 0.00 37.74 3.46
175 176 2.515523 CATCTGCTGGGGCCTTCG 60.516 66.667 0.84 0.00 37.74 3.79
176 177 4.496336 ATCTGCTGGGGCCTTCGC 62.496 66.667 0.84 4.27 37.74 4.70
181 182 4.020617 CTGGGGCCTTCGCTGACA 62.021 66.667 0.84 0.00 34.44 3.58
182 183 4.329545 TGGGGCCTTCGCTGACAC 62.330 66.667 0.84 0.00 34.44 3.67
184 185 4.373116 GGGCCTTCGCTGACACGA 62.373 66.667 0.84 0.00 41.04 4.35
185 186 3.112709 GGCCTTCGCTGACACGAC 61.113 66.667 0.00 0.00 42.78 4.34
186 187 2.049063 GCCTTCGCTGACACGACT 60.049 61.111 0.00 0.00 42.78 4.18
187 188 1.211969 GCCTTCGCTGACACGACTA 59.788 57.895 0.00 0.00 42.78 2.59
188 189 1.071567 GCCTTCGCTGACACGACTAC 61.072 60.000 0.00 0.00 42.78 2.73
189 190 0.456312 CCTTCGCTGACACGACTACC 60.456 60.000 0.00 0.00 42.78 3.18
190 191 0.793478 CTTCGCTGACACGACTACCG 60.793 60.000 0.00 0.00 42.78 4.02
210 211 2.279054 GGTTATCCGTCGTCGCCC 60.279 66.667 0.00 0.00 35.54 6.13
211 212 2.779033 GGTTATCCGTCGTCGCCCT 61.779 63.158 0.00 0.00 35.54 5.19
212 213 1.588139 GTTATCCGTCGTCGCCCTG 60.588 63.158 0.00 0.00 35.54 4.45
213 214 2.777972 TTATCCGTCGTCGCCCTGG 61.778 63.158 0.00 0.00 35.54 4.45
216 217 4.675029 CCGTCGTCGCCCTGGTTT 62.675 66.667 0.00 0.00 35.54 3.27
217 218 2.663852 CGTCGTCGCCCTGGTTTT 60.664 61.111 0.00 0.00 0.00 2.43
218 219 2.943653 GTCGTCGCCCTGGTTTTG 59.056 61.111 0.00 0.00 0.00 2.44
219 220 2.975799 TCGTCGCCCTGGTTTTGC 60.976 61.111 0.00 0.00 0.00 3.68
220 221 4.038080 CGTCGCCCTGGTTTTGCC 62.038 66.667 0.00 0.00 37.90 4.52
221 222 3.680786 GTCGCCCTGGTTTTGCCC 61.681 66.667 0.00 0.00 36.04 5.36
222 223 3.897122 TCGCCCTGGTTTTGCCCT 61.897 61.111 0.00 0.00 36.04 5.19
223 224 2.034999 CGCCCTGGTTTTGCCCTA 59.965 61.111 0.00 0.00 36.04 3.53
224 225 2.340328 CGCCCTGGTTTTGCCCTAC 61.340 63.158 0.00 0.00 36.04 3.18
225 226 1.982395 GCCCTGGTTTTGCCCTACC 60.982 63.158 0.00 0.00 36.04 3.18
226 227 1.304962 CCCTGGTTTTGCCCTACCC 60.305 63.158 0.00 0.00 36.04 3.69
227 228 1.304962 CCTGGTTTTGCCCTACCCC 60.305 63.158 0.00 0.00 36.04 4.95
228 229 1.462928 CTGGTTTTGCCCTACCCCA 59.537 57.895 0.00 0.00 36.04 4.96
229 230 0.611896 CTGGTTTTGCCCTACCCCAG 60.612 60.000 0.00 0.00 36.04 4.45
230 231 1.982395 GGTTTTGCCCTACCCCAGC 60.982 63.158 0.00 0.00 0.00 4.85
231 232 1.982395 GTTTTGCCCTACCCCAGCC 60.982 63.158 0.00 0.00 0.00 4.85
232 233 3.577334 TTTTGCCCTACCCCAGCCG 62.577 63.158 0.00 0.00 0.00 5.52
234 235 4.815973 TGCCCTACCCCAGCCGAT 62.816 66.667 0.00 0.00 0.00 4.18
235 236 3.942439 GCCCTACCCCAGCCGATC 61.942 72.222 0.00 0.00 0.00 3.69
236 237 3.616721 CCCTACCCCAGCCGATCG 61.617 72.222 8.51 8.51 0.00 3.69
237 238 4.301027 CCTACCCCAGCCGATCGC 62.301 72.222 10.32 5.46 37.98 4.58
238 239 4.301027 CTACCCCAGCCGATCGCC 62.301 72.222 10.32 0.00 38.78 5.54
254 255 4.025401 CCGTTGCGGTTGCTGTCC 62.025 66.667 0.00 0.00 42.73 4.02
255 256 4.025401 CGTTGCGGTTGCTGTCCC 62.025 66.667 0.00 0.00 43.34 4.46
256 257 2.904866 GTTGCGGTTGCTGTCCCA 60.905 61.111 0.00 0.00 43.34 4.37
257 258 2.115052 TTGCGGTTGCTGTCCCAT 59.885 55.556 0.00 0.00 43.34 4.00
258 259 1.530419 TTGCGGTTGCTGTCCCATT 60.530 52.632 0.00 0.00 43.34 3.16
259 260 1.804396 TTGCGGTTGCTGTCCCATTG 61.804 55.000 0.00 0.00 43.34 2.82
260 261 2.568090 CGGTTGCTGTCCCATTGC 59.432 61.111 0.00 0.00 0.00 3.56
261 262 2.973082 GGTTGCTGTCCCATTGCC 59.027 61.111 0.00 0.00 0.00 4.52
262 263 1.907807 GGTTGCTGTCCCATTGCCA 60.908 57.895 0.00 0.00 0.00 4.92
263 264 1.588082 GTTGCTGTCCCATTGCCAG 59.412 57.895 0.00 0.00 0.00 4.85
264 265 0.895100 GTTGCTGTCCCATTGCCAGA 60.895 55.000 0.00 0.00 0.00 3.86
265 266 0.040058 TTGCTGTCCCATTGCCAGAT 59.960 50.000 0.00 0.00 0.00 2.90
266 267 0.394762 TGCTGTCCCATTGCCAGATC 60.395 55.000 0.00 0.00 0.00 2.75
267 268 0.106819 GCTGTCCCATTGCCAGATCT 60.107 55.000 0.00 0.00 0.00 2.75
268 269 1.676746 CTGTCCCATTGCCAGATCTG 58.323 55.000 16.24 16.24 0.00 2.90
269 270 1.211212 CTGTCCCATTGCCAGATCTGA 59.789 52.381 24.62 4.53 0.00 3.27
270 271 1.065199 TGTCCCATTGCCAGATCTGAC 60.065 52.381 24.62 13.69 0.00 3.51
271 272 0.548031 TCCCATTGCCAGATCTGACC 59.452 55.000 24.62 14.38 0.00 4.02
272 273 0.816825 CCCATTGCCAGATCTGACCG 60.817 60.000 24.62 8.66 0.00 4.79
273 274 1.442526 CCATTGCCAGATCTGACCGC 61.443 60.000 24.62 18.45 0.00 5.68
274 275 0.463295 CATTGCCAGATCTGACCGCT 60.463 55.000 24.62 1.57 0.00 5.52
275 276 0.179062 ATTGCCAGATCTGACCGCTC 60.179 55.000 24.62 6.26 0.00 5.03
276 277 2.107953 GCCAGATCTGACCGCTCC 59.892 66.667 24.62 0.00 0.00 4.70
277 278 2.725312 GCCAGATCTGACCGCTCCA 61.725 63.158 24.62 0.00 0.00 3.86
278 279 2.037620 GCCAGATCTGACCGCTCCAT 62.038 60.000 24.62 0.00 0.00 3.41
279 280 0.033228 CCAGATCTGACCGCTCCATC 59.967 60.000 24.62 0.00 0.00 3.51
280 281 0.318529 CAGATCTGACCGCTCCATCG 60.319 60.000 18.34 0.00 0.00 3.84
281 282 1.663074 GATCTGACCGCTCCATCGC 60.663 63.158 0.00 0.00 0.00 4.58
282 283 3.157217 ATCTGACCGCTCCATCGCC 62.157 63.158 0.00 0.00 0.00 5.54
283 284 4.147449 CTGACCGCTCCATCGCCA 62.147 66.667 0.00 0.00 0.00 5.69
284 285 4.451150 TGACCGCTCCATCGCCAC 62.451 66.667 0.00 0.00 0.00 5.01
290 291 4.899239 CTCCATCGCCACCGCCTC 62.899 72.222 0.00 0.00 0.00 4.70
314 315 3.064324 GTCGCTGCCTGCCCAAAT 61.064 61.111 0.00 0.00 38.78 2.32
315 316 2.751436 TCGCTGCCTGCCCAAATC 60.751 61.111 0.00 0.00 38.78 2.17
316 317 4.183686 CGCTGCCTGCCCAAATCG 62.184 66.667 0.00 0.00 38.78 3.34
317 318 3.830192 GCTGCCTGCCCAAATCGG 61.830 66.667 0.00 0.00 35.15 4.18
325 326 3.965780 GCCCAAATCGGCCTAATTG 57.034 52.632 0.00 0.00 43.66 2.32
326 327 1.398692 GCCCAAATCGGCCTAATTGA 58.601 50.000 6.64 0.00 43.66 2.57
327 328 1.067060 GCCCAAATCGGCCTAATTGAC 59.933 52.381 6.64 0.00 43.66 3.18
328 329 1.681264 CCCAAATCGGCCTAATTGACC 59.319 52.381 6.64 0.00 0.00 4.02
330 331 1.021968 AAATCGGCCTAATTGACCGC 58.978 50.000 0.00 0.00 46.49 5.68
331 332 0.180406 AATCGGCCTAATTGACCGCT 59.820 50.000 0.00 0.00 46.49 5.52
332 333 0.180406 ATCGGCCTAATTGACCGCTT 59.820 50.000 0.00 0.00 46.49 4.68
333 334 0.461339 TCGGCCTAATTGACCGCTTC 60.461 55.000 0.00 0.00 46.49 3.86
334 335 0.462047 CGGCCTAATTGACCGCTTCT 60.462 55.000 0.00 0.00 40.55 2.85
335 336 1.300481 GGCCTAATTGACCGCTTCTC 58.700 55.000 0.00 0.00 0.00 2.87
336 337 1.300481 GCCTAATTGACCGCTTCTCC 58.700 55.000 0.00 0.00 0.00 3.71
337 338 1.571919 CCTAATTGACCGCTTCTCCG 58.428 55.000 0.00 0.00 0.00 4.63
338 339 0.931005 CTAATTGACCGCTTCTCCGC 59.069 55.000 0.00 0.00 0.00 5.54
339 340 0.461339 TAATTGACCGCTTCTCCGCC 60.461 55.000 0.00 0.00 0.00 6.13
340 341 4.735132 TTGACCGCTTCTCCGCCG 62.735 66.667 0.00 0.00 0.00 6.46
345 346 4.771356 CGCTTCTCCGCCGTCGAA 62.771 66.667 0.00 0.00 38.10 3.71
346 347 2.202756 GCTTCTCCGCCGTCGAAT 60.203 61.111 0.00 0.00 38.10 3.34
347 348 2.231618 GCTTCTCCGCCGTCGAATC 61.232 63.158 0.00 0.00 38.10 2.52
348 349 1.138883 CTTCTCCGCCGTCGAATCA 59.861 57.895 0.00 0.00 38.10 2.57
349 350 1.140407 CTTCTCCGCCGTCGAATCAC 61.140 60.000 0.00 0.00 38.10 3.06
350 351 2.552585 TTCTCCGCCGTCGAATCACC 62.553 60.000 0.00 0.00 38.10 4.02
351 352 4.485834 TCCGCCGTCGAATCACCG 62.486 66.667 0.00 0.00 38.10 4.94
355 356 4.789075 CCGTCGAATCACCGCCGT 62.789 66.667 0.00 0.00 0.00 5.68
356 357 3.541831 CGTCGAATCACCGCCGTG 61.542 66.667 0.00 0.00 41.72 4.94
357 358 3.849953 GTCGAATCACCGCCGTGC 61.850 66.667 0.00 0.00 40.04 5.34
358 359 4.063967 TCGAATCACCGCCGTGCT 62.064 61.111 0.00 0.00 40.04 4.40
359 360 3.853330 CGAATCACCGCCGTGCTG 61.853 66.667 0.00 0.00 40.04 4.41
360 361 4.166011 GAATCACCGCCGTGCTGC 62.166 66.667 0.00 0.00 40.04 5.25
361 362 4.704833 AATCACCGCCGTGCTGCT 62.705 61.111 0.00 0.00 40.04 4.24
366 367 4.827087 CCGCCGTGCTGCTGATCT 62.827 66.667 0.00 0.00 0.00 2.75
367 368 3.561213 CGCCGTGCTGCTGATCTG 61.561 66.667 0.00 0.00 0.00 2.90
368 369 2.125391 GCCGTGCTGCTGATCTGA 60.125 61.111 3.42 0.00 0.00 3.27
369 370 2.172372 GCCGTGCTGCTGATCTGAG 61.172 63.158 3.42 0.00 0.00 3.35
370 371 2.172372 CCGTGCTGCTGATCTGAGC 61.172 63.158 3.42 9.75 39.62 4.26
371 372 1.153608 CGTGCTGCTGATCTGAGCT 60.154 57.895 17.93 0.00 39.90 4.09
372 373 1.146957 CGTGCTGCTGATCTGAGCTC 61.147 60.000 6.82 6.82 39.90 4.09
373 374 0.810823 GTGCTGCTGATCTGAGCTCC 60.811 60.000 12.15 0.00 39.90 4.70
374 375 1.227615 GCTGCTGATCTGAGCTCCC 60.228 63.158 12.15 0.00 39.90 4.30
375 376 1.446791 CTGCTGATCTGAGCTCCCC 59.553 63.158 12.15 0.00 39.90 4.81
376 377 1.002662 TGCTGATCTGAGCTCCCCT 59.997 57.895 12.15 0.00 39.90 4.79
377 378 1.047596 TGCTGATCTGAGCTCCCCTC 61.048 60.000 12.15 5.45 39.90 4.30
378 379 2.040330 CTGATCTGAGCTCCCCTCG 58.960 63.158 12.15 0.00 43.82 4.63
379 380 2.086251 CTGATCTGAGCTCCCCTCGC 62.086 65.000 12.15 0.00 43.82 5.03
380 381 1.832167 GATCTGAGCTCCCCTCGCT 60.832 63.158 12.15 0.00 43.82 4.93
381 382 2.086251 GATCTGAGCTCCCCTCGCTG 62.086 65.000 12.15 0.00 43.82 5.18
382 383 4.527583 CTGAGCTCCCCTCGCTGC 62.528 72.222 12.15 0.00 43.82 5.25
392 393 4.785453 CTCGCTGCCCCCAGGTTC 62.785 72.222 0.00 0.00 39.54 3.62
395 396 4.785453 GCTGCCCCCAGGTTCGAG 62.785 72.222 0.00 0.00 39.54 4.04
396 397 4.785453 CTGCCCCCAGGTTCGAGC 62.785 72.222 0.00 0.00 35.38 5.03
402 403 4.680237 CCAGGTTCGAGCCGCACA 62.680 66.667 13.05 0.00 0.00 4.57
403 404 3.414700 CAGGTTCGAGCCGCACAC 61.415 66.667 13.05 0.00 0.00 3.82
404 405 3.923864 AGGTTCGAGCCGCACACA 61.924 61.111 13.05 0.00 0.00 3.72
405 406 3.712881 GGTTCGAGCCGCACACAC 61.713 66.667 1.31 0.00 0.00 3.82
406 407 4.059459 GTTCGAGCCGCACACACG 62.059 66.667 0.00 0.00 0.00 4.49
427 428 4.824515 CCCCTCCGACGCTCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
428 429 3.213402 CCCTCCGACGCTCCTCTC 61.213 72.222 0.00 0.00 0.00 3.20
429 430 2.124487 CCTCCGACGCTCCTCTCT 60.124 66.667 0.00 0.00 0.00 3.10
430 431 2.184167 CCTCCGACGCTCCTCTCTC 61.184 68.421 0.00 0.00 0.00 3.20
431 432 1.153249 CTCCGACGCTCCTCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
432 433 1.436195 CTCCGACGCTCCTCTCTCTG 61.436 65.000 0.00 0.00 0.00 3.35
433 434 2.407210 CGACGCTCCTCTCTCTGC 59.593 66.667 0.00 0.00 0.00 4.26
434 435 2.804856 GACGCTCCTCTCTCTGCC 59.195 66.667 0.00 0.00 0.00 4.85
435 436 1.752694 GACGCTCCTCTCTCTGCCT 60.753 63.158 0.00 0.00 0.00 4.75
436 437 1.724582 GACGCTCCTCTCTCTGCCTC 61.725 65.000 0.00 0.00 0.00 4.70
437 438 2.833533 CGCTCCTCTCTCTGCCTCG 61.834 68.421 0.00 0.00 0.00 4.63
438 439 1.453015 GCTCCTCTCTCTGCCTCGA 60.453 63.158 0.00 0.00 0.00 4.04
439 440 1.034838 GCTCCTCTCTCTGCCTCGAA 61.035 60.000 0.00 0.00 0.00 3.71
440 441 1.691196 CTCCTCTCTCTGCCTCGAAT 58.309 55.000 0.00 0.00 0.00 3.34
441 442 2.031120 CTCCTCTCTCTGCCTCGAATT 58.969 52.381 0.00 0.00 0.00 2.17
442 443 1.753649 TCCTCTCTCTGCCTCGAATTG 59.246 52.381 0.00 0.00 0.00 2.32
443 444 1.569708 CTCTCTCTGCCTCGAATTGC 58.430 55.000 0.00 0.00 0.00 3.56
444 445 0.176680 TCTCTCTGCCTCGAATTGCC 59.823 55.000 0.00 0.00 0.00 4.52
445 446 1.150567 CTCTCTGCCTCGAATTGCCG 61.151 60.000 0.00 0.00 0.00 5.69
446 447 2.817423 CTCTGCCTCGAATTGCCGC 61.817 63.158 0.00 0.00 0.00 6.53
447 448 2.821366 CTGCCTCGAATTGCCGCT 60.821 61.111 0.00 0.00 0.00 5.52
448 449 2.817423 CTGCCTCGAATTGCCGCTC 61.817 63.158 0.00 0.00 0.00 5.03
449 450 3.577313 GCCTCGAATTGCCGCTCC 61.577 66.667 0.00 0.00 0.00 4.70
450 451 2.187946 CCTCGAATTGCCGCTCCT 59.812 61.111 0.00 0.00 0.00 3.69
451 452 1.884926 CCTCGAATTGCCGCTCCTC 60.885 63.158 0.00 0.00 0.00 3.71
452 453 1.884926 CTCGAATTGCCGCTCCTCC 60.885 63.158 0.00 0.00 0.00 4.30
453 454 3.264897 CGAATTGCCGCTCCTCCG 61.265 66.667 0.00 0.00 0.00 4.63
454 455 3.577313 GAATTGCCGCTCCTCCGC 61.577 66.667 0.00 0.00 0.00 5.54
455 456 4.101448 AATTGCCGCTCCTCCGCT 62.101 61.111 0.00 0.00 0.00 5.52
456 457 4.845580 ATTGCCGCTCCTCCGCTG 62.846 66.667 0.00 0.00 0.00 5.18
463 464 4.079850 CTCCTCCGCTGCTGCACT 62.080 66.667 16.29 0.00 39.64 4.40
464 465 4.383861 TCCTCCGCTGCTGCACTG 62.384 66.667 16.29 3.57 39.64 3.66
474 475 4.099170 CTGCACTGCCGCTGCTTC 62.099 66.667 0.70 0.00 38.71 3.86
485 486 4.845580 CTGCTTCGCCGCCCTGAT 62.846 66.667 0.00 0.00 0.00 2.90
486 487 4.408821 TGCTTCGCCGCCCTGATT 62.409 61.111 0.00 0.00 0.00 2.57
487 488 3.577313 GCTTCGCCGCCCTGATTC 61.577 66.667 0.00 0.00 0.00 2.52
488 489 3.264897 CTTCGCCGCCCTGATTCG 61.265 66.667 0.00 0.00 0.00 3.34
493 494 3.864686 CCGCCCTGATTCGCGTTG 61.865 66.667 5.77 0.00 46.83 4.10
494 495 4.520846 CGCCCTGATTCGCGTTGC 62.521 66.667 5.77 0.00 43.35 4.17
495 496 4.179579 GCCCTGATTCGCGTTGCC 62.180 66.667 5.77 0.00 0.00 4.52
496 497 3.864686 CCCTGATTCGCGTTGCCG 61.865 66.667 5.77 0.00 37.07 5.69
512 513 4.444838 CGCCGTCCCGATTCACCA 62.445 66.667 0.00 0.00 0.00 4.17
513 514 2.818274 GCCGTCCCGATTCACCAC 60.818 66.667 0.00 0.00 0.00 4.16
514 515 2.125269 CCGTCCCGATTCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
515 516 2.125269 CGTCCCGATTCACCACCC 60.125 66.667 0.00 0.00 0.00 4.61
516 517 2.271173 GTCCCGATTCACCACCCC 59.729 66.667 0.00 0.00 0.00 4.95
517 518 3.012722 TCCCGATTCACCACCCCC 61.013 66.667 0.00 0.00 0.00 5.40
518 519 4.483243 CCCGATTCACCACCCCCG 62.483 72.222 0.00 0.00 0.00 5.73
548 549 4.666253 CACCCCACCACTGCCCAG 62.666 72.222 0.00 0.00 0.00 4.45
549 550 4.918360 ACCCCACCACTGCCCAGA 62.918 66.667 1.69 0.00 0.00 3.86
550 551 4.351054 CCCCACCACTGCCCAGAC 62.351 72.222 1.69 0.00 0.00 3.51
551 552 4.704833 CCCACCACTGCCCAGACG 62.705 72.222 1.69 0.00 0.00 4.18
553 554 4.624364 CACCACTGCCCAGACGCA 62.624 66.667 1.69 0.00 37.19 5.24
565 566 4.778143 GACGCAGCCACCCCGAAT 62.778 66.667 0.00 0.00 0.00 3.34
566 567 4.778143 ACGCAGCCACCCCGAATC 62.778 66.667 0.00 0.00 0.00 2.52
568 569 4.778143 GCAGCCACCCCGAATCGT 62.778 66.667 0.82 0.00 0.00 3.73
569 570 2.819595 CAGCCACCCCGAATCGTG 60.820 66.667 0.82 0.00 0.00 4.35
570 571 4.778143 AGCCACCCCGAATCGTGC 62.778 66.667 0.82 0.00 0.00 5.34
606 607 4.460683 ACTGCCGCCGCCGATTAA 62.461 61.111 0.00 0.00 36.29 1.40
607 608 2.972505 CTGCCGCCGCCGATTAAT 60.973 61.111 0.00 0.00 36.29 1.40
608 609 2.515057 TGCCGCCGCCGATTAATT 60.515 55.556 0.00 0.00 36.29 1.40
609 610 2.058829 CTGCCGCCGCCGATTAATTT 62.059 55.000 0.00 0.00 36.29 1.82
610 611 1.065109 GCCGCCGCCGATTAATTTT 59.935 52.632 0.00 0.00 36.29 1.82
611 612 0.526739 GCCGCCGCCGATTAATTTTT 60.527 50.000 0.00 0.00 36.29 1.94
612 613 1.268640 GCCGCCGCCGATTAATTTTTA 60.269 47.619 0.00 0.00 36.29 1.52
613 614 2.377880 CCGCCGCCGATTAATTTTTAC 58.622 47.619 0.00 0.00 36.29 2.01
614 615 2.223294 CCGCCGCCGATTAATTTTTACA 60.223 45.455 0.00 0.00 36.29 2.41
615 616 3.549221 CCGCCGCCGATTAATTTTTACAT 60.549 43.478 0.00 0.00 36.29 2.29
616 617 4.039032 CGCCGCCGATTAATTTTTACATT 58.961 39.130 0.00 0.00 36.29 2.71
617 618 4.501198 CGCCGCCGATTAATTTTTACATTT 59.499 37.500 0.00 0.00 36.29 2.32
618 619 5.553581 CGCCGCCGATTAATTTTTACATTTG 60.554 40.000 0.00 0.00 36.29 2.32
619 620 5.723237 CCGCCGATTAATTTTTACATTTGC 58.277 37.500 0.00 0.00 0.00 3.68
620 621 5.289675 CCGCCGATTAATTTTTACATTTGCA 59.710 36.000 0.00 0.00 0.00 4.08
621 622 6.402017 CGCCGATTAATTTTTACATTTGCAG 58.598 36.000 0.00 0.00 0.00 4.41
622 623 6.034470 CGCCGATTAATTTTTACATTTGCAGT 59.966 34.615 0.00 0.00 0.00 4.40
623 624 7.411372 CGCCGATTAATTTTTACATTTGCAGTT 60.411 33.333 0.00 0.00 0.00 3.16
624 625 8.227119 GCCGATTAATTTTTACATTTGCAGTTT 58.773 29.630 0.00 0.00 0.00 2.66
625 626 9.527566 CCGATTAATTTTTACATTTGCAGTTTG 57.472 29.630 0.00 0.00 0.00 2.93
626 627 9.039500 CGATTAATTTTTACATTTGCAGTTTGC 57.961 29.630 0.00 0.00 45.29 3.68
641 642 5.473039 GCAGTTTGCATTTTCTATTGGAGT 58.527 37.500 0.00 0.00 44.26 3.85
642 643 5.928264 GCAGTTTGCATTTTCTATTGGAGTT 59.072 36.000 0.00 0.00 44.26 3.01
643 644 6.128742 GCAGTTTGCATTTTCTATTGGAGTTG 60.129 38.462 0.00 0.00 44.26 3.16
644 645 5.928264 AGTTTGCATTTTCTATTGGAGTTGC 59.072 36.000 0.00 0.00 0.00 4.17
645 646 5.726980 TTGCATTTTCTATTGGAGTTGCT 57.273 34.783 0.00 0.00 0.00 3.91
646 647 5.314923 TGCATTTTCTATTGGAGTTGCTC 57.685 39.130 0.00 0.00 0.00 4.26
647 648 5.012239 TGCATTTTCTATTGGAGTTGCTCT 58.988 37.500 0.00 0.00 0.00 4.09
648 649 5.477984 TGCATTTTCTATTGGAGTTGCTCTT 59.522 36.000 0.00 0.00 0.00 2.85
649 650 6.015180 TGCATTTTCTATTGGAGTTGCTCTTT 60.015 34.615 0.00 0.00 0.00 2.52
650 651 6.870439 GCATTTTCTATTGGAGTTGCTCTTTT 59.130 34.615 0.00 0.00 0.00 2.27
651 652 8.028938 GCATTTTCTATTGGAGTTGCTCTTTTA 58.971 33.333 0.00 0.00 0.00 1.52
657 658 9.988815 TCTATTGGAGTTGCTCTTTTATATCTC 57.011 33.333 0.00 0.00 0.00 2.75
658 659 9.213799 CTATTGGAGTTGCTCTTTTATATCTCC 57.786 37.037 0.00 0.00 40.13 3.71
659 660 5.601662 TGGAGTTGCTCTTTTATATCTCCG 58.398 41.667 0.00 0.00 41.88 4.63
660 661 5.128827 TGGAGTTGCTCTTTTATATCTCCGT 59.871 40.000 0.00 0.00 41.88 4.69
661 662 6.049790 GGAGTTGCTCTTTTATATCTCCGTT 58.950 40.000 0.00 0.00 32.48 4.44
662 663 6.539103 GGAGTTGCTCTTTTATATCTCCGTTT 59.461 38.462 0.00 0.00 32.48 3.60
663 664 7.065923 GGAGTTGCTCTTTTATATCTCCGTTTT 59.934 37.037 0.00 0.00 32.48 2.43
664 665 7.752695 AGTTGCTCTTTTATATCTCCGTTTTG 58.247 34.615 0.00 0.00 0.00 2.44
665 666 6.119144 TGCTCTTTTATATCTCCGTTTTGC 57.881 37.500 0.00 0.00 0.00 3.68
666 667 5.645929 TGCTCTTTTATATCTCCGTTTTGCA 59.354 36.000 0.00 0.00 0.00 4.08
667 668 6.318648 TGCTCTTTTATATCTCCGTTTTGCAT 59.681 34.615 0.00 0.00 0.00 3.96
668 669 6.853362 GCTCTTTTATATCTCCGTTTTGCATC 59.147 38.462 0.00 0.00 0.00 3.91
669 670 7.467267 GCTCTTTTATATCTCCGTTTTGCATCA 60.467 37.037 0.00 0.00 0.00 3.07
670 671 8.450578 TCTTTTATATCTCCGTTTTGCATCAT 57.549 30.769 0.00 0.00 0.00 2.45
671 672 8.559536 TCTTTTATATCTCCGTTTTGCATCATC 58.440 33.333 0.00 0.00 0.00 2.92
672 673 8.450578 TTTTATATCTCCGTTTTGCATCATCT 57.549 30.769 0.00 0.00 0.00 2.90
673 674 5.936686 ATATCTCCGTTTTGCATCATCTG 57.063 39.130 0.00 0.00 0.00 2.90
684 685 1.022735 CATCATCTGCTGGAGTTGGC 58.977 55.000 7.29 0.00 0.00 4.52
685 686 0.463295 ATCATCTGCTGGAGTTGGCG 60.463 55.000 7.29 0.00 0.00 5.69
686 687 1.376424 CATCTGCTGGAGTTGGCGT 60.376 57.895 0.00 0.00 0.00 5.68
687 688 0.957395 CATCTGCTGGAGTTGGCGTT 60.957 55.000 0.00 0.00 0.00 4.84
688 689 0.250901 ATCTGCTGGAGTTGGCGTTT 60.251 50.000 0.00 0.00 0.00 3.60
689 690 0.465460 TCTGCTGGAGTTGGCGTTTT 60.465 50.000 0.00 0.00 0.00 2.43
690 691 0.385390 CTGCTGGAGTTGGCGTTTTT 59.615 50.000 0.00 0.00 0.00 1.94
790 791 0.245539 TCTAAGCGGACCGAACCAAG 59.754 55.000 20.50 6.93 0.00 3.61
793 794 2.726822 AAGCGGACCGAACCAAGGAC 62.727 60.000 20.50 0.00 0.00 3.85
800 801 1.489230 ACCGAACCAAGGACTTCACTT 59.511 47.619 0.00 0.00 0.00 3.16
817 820 7.636326 ACTTCACTTACGAAACGATGAAAAAT 58.364 30.769 0.00 0.00 0.00 1.82
842 846 3.716195 CGGGTGCCATGGTGGAGA 61.716 66.667 14.67 0.00 40.96 3.71
845 849 1.074775 GGTGCCATGGTGGAGAACA 59.925 57.895 14.67 0.00 40.96 3.18
869 873 1.005037 TCGCTGGTGCAGGTGTAAG 60.005 57.895 0.00 0.00 39.64 2.34
907 911 1.946650 GCGCGGCTTCAGCTACTAG 60.947 63.158 8.83 0.00 41.70 2.57
935 939 0.759346 AGGATATCCAACGACCAGCC 59.241 55.000 23.81 0.00 38.89 4.85
945 949 2.045536 GACCAGCCTGCCAAGAGG 60.046 66.667 0.00 0.00 36.03 3.69
1232 1242 4.735132 CGAAACGGCAGCGGAGGA 62.735 66.667 7.02 0.00 0.00 3.71
1348 1358 0.610687 CCTTCTTCCTCCGTGCTTCT 59.389 55.000 0.00 0.00 0.00 2.85
1428 1438 4.560108 GCTGACTTGATGTTGGCTGATTTT 60.560 41.667 0.00 0.00 0.00 1.82
1460 1470 2.152016 GTCAGCTTTGTTACTGTCCCC 58.848 52.381 0.00 0.00 35.37 4.81
1688 1699 7.122501 AGCATACATTGGTTACATTTGATCACA 59.877 33.333 0.00 0.00 29.87 3.58
1701 1712 7.544622 ACATTTGATCACAGATTGGATTTCTG 58.455 34.615 0.00 0.00 44.95 3.02
1990 2005 5.009631 TGGATTTTATGTACTTGCTGCTGT 58.990 37.500 0.00 2.63 0.00 4.40
2043 2067 0.393537 CTGGCCCTCATGTTGAGTCC 60.394 60.000 0.00 5.29 42.80 3.85
2335 2361 7.041508 CCTTAGTAATTGAAGCATAGCCTCAAG 60.042 40.741 8.72 0.00 41.36 3.02
2357 2383 4.771054 AGTTTCCTAGTGTCCGACAGTATT 59.229 41.667 15.05 0.00 33.90 1.89
2390 2416 5.989168 CCATTTTGTTGACCCCTAAAAGTTC 59.011 40.000 0.00 0.00 0.00 3.01
2391 2417 6.407525 CCATTTTGTTGACCCCTAAAAGTTCA 60.408 38.462 0.00 0.00 0.00 3.18
2433 2459 0.312102 GCTTGCAAGGAAGTGACCAC 59.688 55.000 27.10 3.20 0.00 4.16
2495 2522 4.948847 TGTGATATGAAGTGATCCCTTCG 58.051 43.478 12.48 0.00 43.06 3.79
2515 2542 0.175302 CTCTGTCTGGCCTAGCAGTG 59.825 60.000 3.32 6.50 34.35 3.66
2652 2687 4.386049 GCTATCTGTGCGTATGTGGTATTC 59.614 45.833 0.00 0.00 0.00 1.75
2661 2696 5.092781 GCGTATGTGGTATTCTGTTTTTGG 58.907 41.667 0.00 0.00 0.00 3.28
2682 2717 5.914033 TGGTAATAGTGACTGTAGCCAATC 58.086 41.667 0.00 0.00 0.00 2.67
3021 3056 5.126384 AGAGCTTGGAACTGTCTACAGATAC 59.874 44.000 16.74 6.39 46.59 2.24
3099 3134 9.586435 GTATTTCCTTGATTCCGAATTTGATTT 57.414 29.630 0.00 0.00 0.00 2.17
3188 3223 6.563422 CAAGGTTTTGTGTTTTCTGAGATGA 58.437 36.000 0.00 0.00 0.00 2.92
3195 3230 8.620116 TTTGTGTTTTCTGAGATGACATATGA 57.380 30.769 10.38 0.00 0.00 2.15
3313 3348 6.152932 CATGGATGCTTAAGTAAAGGCATT 57.847 37.500 4.02 0.00 34.30 3.56
3348 3383 4.254492 CCTAGGTAGACCTTTTCTTGTGC 58.746 47.826 6.52 0.00 46.09 4.57
3370 3405 3.626217 CCCTATTAAGAAAACGTGGAGGC 59.374 47.826 0.00 0.00 0.00 4.70
3385 3420 1.229082 AGGCCCCGACTCACAGTTA 60.229 57.895 0.00 0.00 0.00 2.24
3442 5176 6.980978 CCACTACTCTGACATTACTAACATGG 59.019 42.308 0.00 0.00 0.00 3.66
3479 5213 6.544197 TGTCTGCAACAAGTTTTAGACCATAA 59.456 34.615 16.99 3.63 34.58 1.90
3638 5373 1.000843 GCAGTTTGGCTTCCGGAATTT 59.999 47.619 19.21 0.00 0.00 1.82
3684 5419 4.543692 CAGAAAAATCTGTTGGCAGTGAG 58.456 43.478 0.00 0.00 43.05 3.51
3837 5572 3.683365 AGAAAATGGCAATGTTCCACC 57.317 42.857 0.00 0.00 36.26 4.61
3887 5623 6.924111 ACAAAGAATAAGCAAATTCGTGGAT 58.076 32.000 15.53 1.99 40.19 3.41
3888 5624 7.378181 ACAAAGAATAAGCAAATTCGTGGATT 58.622 30.769 15.53 0.00 40.19 3.01
3894 5630 8.466086 AATAAGCAAATTCGTGGATTTTCTTC 57.534 30.769 2.41 0.00 35.28 2.87
3923 5659 6.016276 GGAAAAGGGCATATAACATCATTCGT 60.016 38.462 0.00 0.00 0.00 3.85
3979 5715 5.872617 CCTGAACGGTTTGACATCACTTATA 59.127 40.000 0.00 0.00 0.00 0.98
4047 5783 1.125093 TCCTTGGGTCTTTGGAGCGA 61.125 55.000 0.00 0.00 40.51 4.93
4122 5858 1.094785 CAACCCAAGCCCGTATTCTG 58.905 55.000 0.00 0.00 0.00 3.02
4216 5952 5.288712 CCTTGTACTGTAGTAGATTTGTGCG 59.711 44.000 0.00 0.00 0.00 5.34
4233 5969 5.710513 TGTGCGAAGTAAAGAAGGTACTA 57.289 39.130 0.00 0.00 38.49 1.82
4234 5970 5.464168 TGTGCGAAGTAAAGAAGGTACTAC 58.536 41.667 0.00 0.00 38.49 2.73
4235 5971 5.242393 TGTGCGAAGTAAAGAAGGTACTACT 59.758 40.000 0.00 0.00 38.49 2.57
4236 5972 6.430925 TGTGCGAAGTAAAGAAGGTACTACTA 59.569 38.462 0.00 0.00 38.49 1.82
4237 5973 6.744993 GTGCGAAGTAAAGAAGGTACTACTAC 59.255 42.308 0.00 0.00 38.49 2.73
4238 5974 6.656693 TGCGAAGTAAAGAAGGTACTACTACT 59.343 38.462 0.00 0.00 38.49 2.57
4239 5975 7.175641 TGCGAAGTAAAGAAGGTACTACTACTT 59.824 37.037 0.00 0.00 38.49 2.24
4267 6003 1.198759 GGTGACCCTAGGCAGGACAA 61.199 60.000 2.05 0.00 45.91 3.18
4274 6010 2.238646 CCCTAGGCAGGACAACAACATA 59.761 50.000 2.05 0.00 45.91 2.29
4320 6056 5.220989 GCACACACATATCAGATGCTTGATT 60.221 40.000 0.00 0.00 38.65 2.57
4336 6072 5.921976 TGCTTGATTTTTGTTAGCATCACTG 59.078 36.000 0.00 0.00 36.96 3.66
4342 6078 5.940192 TTTTGTTAGCATCACTGACGAAT 57.060 34.783 0.00 0.00 37.91 3.34
4352 6088 3.524541 TCACTGACGAATCCATGACATG 58.475 45.455 8.56 8.56 0.00 3.21
4355 6091 4.154737 CACTGACGAATCCATGACATGTTT 59.845 41.667 14.26 7.51 0.00 2.83
4357 6093 4.322567 TGACGAATCCATGACATGTTTCA 58.677 39.130 19.97 0.00 0.00 2.69
4358 6094 4.759183 TGACGAATCCATGACATGTTTCAA 59.241 37.500 19.97 8.80 0.00 2.69
4359 6095 5.240403 TGACGAATCCATGACATGTTTCAAA 59.760 36.000 19.97 8.57 0.00 2.69
4360 6096 6.083098 ACGAATCCATGACATGTTTCAAAA 57.917 33.333 19.97 0.00 0.00 2.44
4367 6107 7.499292 TCCATGACATGTTTCAAAATTTCAGT 58.501 30.769 14.26 0.00 0.00 3.41
4396 6136 3.055530 ACTGTAATGAGGTGGCTTCAGAG 60.056 47.826 0.00 0.00 0.00 3.35
4516 6256 0.250727 TTGGCCCCAAAGAAGTCGAG 60.251 55.000 0.00 0.00 32.44 4.04
4519 6259 1.377333 CCCCAAAGAAGTCGAGGCC 60.377 63.158 0.00 0.00 0.00 5.19
4525 6265 1.878656 AAGAAGTCGAGGCCAGGACG 61.879 60.000 17.38 11.67 38.20 4.79
4621 6361 1.401539 GCCGTTGCTGACAAATCTTCC 60.402 52.381 0.00 0.00 37.58 3.46
4631 6371 6.100279 TGCTGACAAATCTTCCCTGTAGATAT 59.900 38.462 0.00 0.00 32.21 1.63
4643 6383 5.135533 TCCCTGTAGATATCCCAGTCTGTTA 59.864 44.000 15.27 0.00 0.00 2.41
4669 6409 5.826586 ACTTCAGTTCATATCGTAGAGCAG 58.173 41.667 0.00 0.00 43.63 4.24
4727 6467 1.289800 GGAGTGCTTCCGACGAAACC 61.290 60.000 0.00 0.00 35.91 3.27
4809 6550 1.542492 ACAGAAGCCCAGCATTCTTG 58.458 50.000 0.00 0.00 33.51 3.02
4826 6567 8.239314 AGCATTCTTGATTGTACATAGTTTGTG 58.761 33.333 0.00 0.00 39.48 3.33
4827 6568 8.236586 GCATTCTTGATTGTACATAGTTTGTGA 58.763 33.333 0.00 0.00 39.48 3.58
4828 6569 9.546909 CATTCTTGATTGTACATAGTTTGTGAC 57.453 33.333 0.00 0.00 39.48 3.67
4829 6570 7.667043 TCTTGATTGTACATAGTTTGTGACC 57.333 36.000 0.00 0.00 39.48 4.02
4830 6571 7.220740 TCTTGATTGTACATAGTTTGTGACCA 58.779 34.615 0.00 0.00 39.48 4.02
4866 6607 3.815401 TGCAAGTTTTCAGCTAGACCTTC 59.185 43.478 0.00 0.00 0.00 3.46
4871 6612 3.769739 TTTCAGCTAGACCTTCTTGCA 57.230 42.857 11.34 0.00 45.43 4.08
4872 6613 3.325293 TTCAGCTAGACCTTCTTGCAG 57.675 47.619 11.34 4.45 45.43 4.41
4873 6614 1.066573 TCAGCTAGACCTTCTTGCAGC 60.067 52.381 11.34 1.19 45.43 5.25
4874 6615 1.066286 CAGCTAGACCTTCTTGCAGCT 60.066 52.381 11.34 3.33 45.43 4.24
4875 6616 1.206849 AGCTAGACCTTCTTGCAGCTC 59.793 52.381 11.34 0.00 45.43 4.09
4876 6617 1.742071 GCTAGACCTTCTTGCAGCTCC 60.742 57.143 0.00 0.00 43.15 4.70
4877 6618 1.830477 CTAGACCTTCTTGCAGCTCCT 59.170 52.381 0.00 0.00 0.00 3.69
4878 6619 1.063183 AGACCTTCTTGCAGCTCCTT 58.937 50.000 0.00 0.00 0.00 3.36
4879 6620 2.260822 AGACCTTCTTGCAGCTCCTTA 58.739 47.619 0.00 0.00 0.00 2.69
4880 6621 2.843113 AGACCTTCTTGCAGCTCCTTAT 59.157 45.455 0.00 0.00 0.00 1.73
4911 6652 9.908152 TCACGTCGATAATATTACAGAAATGAT 57.092 29.630 0.00 0.00 0.00 2.45
4912 6653 9.943465 CACGTCGATAATATTACAGAAATGATG 57.057 33.333 0.00 0.00 0.00 3.07
4913 6654 8.648097 ACGTCGATAATATTACAGAAATGATGC 58.352 33.333 0.00 0.00 0.00 3.91
4988 6741 2.791560 CAGCGGTGATCTTGATTAGACG 59.208 50.000 9.50 0.00 35.19 4.18
5265 7066 1.131693 CGAATTTTACCGGGCAAGTCC 59.868 52.381 6.32 0.00 0.00 3.85
5360 7161 0.529992 GATCTTCACTTACCCCGCGG 60.530 60.000 21.04 21.04 0.00 6.46
5376 7177 2.294728 CGGCGTCCGTAAAAGATCC 58.705 57.895 9.69 0.00 42.73 3.36
5474 7278 1.613630 AGCCGTCATCTTCCTGGGT 60.614 57.895 0.00 0.00 0.00 4.51
5495 7299 3.813166 GTGGAAAAGATGGAGAAACGTGA 59.187 43.478 0.00 0.00 0.00 4.35
5508 7312 6.127703 TGGAGAAACGTGAATTACCTCTAGAG 60.128 42.308 13.18 13.18 0.00 2.43
5511 7315 8.749026 AGAAACGTGAATTACCTCTAGAGATA 57.251 34.615 21.76 5.33 0.00 1.98
5554 7360 8.831372 CAGCTATTTGTAATTCGCGATTTAATC 58.169 33.333 21.22 12.65 0.00 1.75
5559 7365 8.766493 TTTGTAATTCGCGATTTAATCATGAG 57.234 30.769 21.22 0.00 0.00 2.90
5564 7370 1.532868 GCGATTTAATCATGAGGCGCT 59.467 47.619 7.64 0.00 40.03 5.92
5623 7429 5.803020 ATTGCGTAAGAAATGAAGAGACC 57.197 39.130 0.00 0.00 46.26 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.551205 CGATGTATATTTGCACTGTGAAGTATT 58.449 33.333 12.86 0.00 0.00 1.89
5 6 7.710907 ACGATGTATATTTGCACTGTGAAGTAT 59.289 33.333 12.86 11.21 0.00 2.12
6 7 7.039270 ACGATGTATATTTGCACTGTGAAGTA 58.961 34.615 12.86 5.07 0.00 2.24
7 8 5.874810 ACGATGTATATTTGCACTGTGAAGT 59.125 36.000 12.86 3.04 0.00 3.01
8 9 6.349973 ACGATGTATATTTGCACTGTGAAG 57.650 37.500 12.86 0.00 0.00 3.02
9 10 6.370166 TGAACGATGTATATTTGCACTGTGAA 59.630 34.615 12.86 0.00 0.00 3.18
10 11 5.872070 TGAACGATGTATATTTGCACTGTGA 59.128 36.000 12.86 0.00 0.00 3.58
11 12 5.959527 GTGAACGATGTATATTTGCACTGTG 59.040 40.000 2.76 2.76 0.00 3.66
12 13 5.064707 GGTGAACGATGTATATTTGCACTGT 59.935 40.000 0.00 0.00 0.00 3.55
13 14 5.294306 AGGTGAACGATGTATATTTGCACTG 59.706 40.000 0.00 0.00 0.00 3.66
14 15 5.428253 AGGTGAACGATGTATATTTGCACT 58.572 37.500 0.00 0.00 0.00 4.40
15 16 5.734855 AGGTGAACGATGTATATTTGCAC 57.265 39.130 0.00 0.00 0.00 4.57
16 17 7.817478 CCTATAGGTGAACGATGTATATTTGCA 59.183 37.037 10.96 0.00 0.00 4.08
17 18 8.033038 TCCTATAGGTGAACGATGTATATTTGC 58.967 37.037 18.51 0.00 36.34 3.68
18 19 9.923143 TTCCTATAGGTGAACGATGTATATTTG 57.077 33.333 18.51 0.00 36.34 2.32
22 23 9.085645 ACATTTCCTATAGGTGAACGATGTATA 57.914 33.333 18.51 0.00 36.34 1.47
23 24 7.963532 ACATTTCCTATAGGTGAACGATGTAT 58.036 34.615 18.51 0.00 36.34 2.29
24 25 7.356089 ACATTTCCTATAGGTGAACGATGTA 57.644 36.000 18.51 0.00 36.34 2.29
25 26 6.235231 ACATTTCCTATAGGTGAACGATGT 57.765 37.500 18.51 15.30 36.34 3.06
26 27 8.657074 TTTACATTTCCTATAGGTGAACGATG 57.343 34.615 18.51 14.78 36.34 3.84
27 28 9.675464 TTTTTACATTTCCTATAGGTGAACGAT 57.325 29.630 18.51 6.92 36.34 3.73
28 29 8.938906 GTTTTTACATTTCCTATAGGTGAACGA 58.061 33.333 18.51 0.00 36.34 3.85
29 30 8.723311 TGTTTTTACATTTCCTATAGGTGAACG 58.277 33.333 18.51 9.82 36.34 3.95
36 37 9.769093 CGGTCTTTGTTTTTACATTTCCTATAG 57.231 33.333 0.00 0.00 0.00 1.31
37 38 8.238631 GCGGTCTTTGTTTTTACATTTCCTATA 58.761 33.333 0.00 0.00 0.00 1.31
38 39 7.088272 GCGGTCTTTGTTTTTACATTTCCTAT 58.912 34.615 0.00 0.00 0.00 2.57
39 40 6.039493 TGCGGTCTTTGTTTTTACATTTCCTA 59.961 34.615 0.00 0.00 0.00 2.94
40 41 5.163499 TGCGGTCTTTGTTTTTACATTTCCT 60.163 36.000 0.00 0.00 0.00 3.36
41 42 5.044558 TGCGGTCTTTGTTTTTACATTTCC 58.955 37.500 0.00 0.00 0.00 3.13
42 43 5.331235 CGTGCGGTCTTTGTTTTTACATTTC 60.331 40.000 0.00 0.00 0.00 2.17
43 44 4.501198 CGTGCGGTCTTTGTTTTTACATTT 59.499 37.500 0.00 0.00 0.00 2.32
44 45 4.039032 CGTGCGGTCTTTGTTTTTACATT 58.961 39.130 0.00 0.00 0.00 2.71
45 46 3.623863 CGTGCGGTCTTTGTTTTTACAT 58.376 40.909 0.00 0.00 0.00 2.29
46 47 2.791849 GCGTGCGGTCTTTGTTTTTACA 60.792 45.455 0.00 0.00 0.00 2.41
47 48 1.776897 GCGTGCGGTCTTTGTTTTTAC 59.223 47.619 0.00 0.00 0.00 2.01
48 49 1.671845 AGCGTGCGGTCTTTGTTTTTA 59.328 42.857 0.00 0.00 0.00 1.52
49 50 0.454196 AGCGTGCGGTCTTTGTTTTT 59.546 45.000 0.00 0.00 0.00 1.94
50 51 1.301423 TAGCGTGCGGTCTTTGTTTT 58.699 45.000 0.00 0.00 0.00 2.43
51 52 1.003223 GTTAGCGTGCGGTCTTTGTTT 60.003 47.619 0.00 0.00 0.00 2.83
52 53 0.584876 GTTAGCGTGCGGTCTTTGTT 59.415 50.000 0.00 0.00 0.00 2.83
53 54 0.249741 AGTTAGCGTGCGGTCTTTGT 60.250 50.000 0.00 0.00 0.00 2.83
54 55 0.163788 CAGTTAGCGTGCGGTCTTTG 59.836 55.000 0.00 0.00 0.00 2.77
55 56 0.249741 ACAGTTAGCGTGCGGTCTTT 60.250 50.000 0.00 0.00 0.00 2.52
56 57 0.666577 GACAGTTAGCGTGCGGTCTT 60.667 55.000 0.00 0.00 0.00 3.01
57 58 1.080705 GACAGTTAGCGTGCGGTCT 60.081 57.895 0.00 0.00 0.00 3.85
58 59 2.092882 GGACAGTTAGCGTGCGGTC 61.093 63.158 0.00 0.00 0.00 4.79
59 60 2.048503 GGACAGTTAGCGTGCGGT 60.049 61.111 1.16 1.16 0.00 5.68
60 61 1.019278 ATTGGACAGTTAGCGTGCGG 61.019 55.000 0.00 0.00 0.00 5.69
61 62 1.588404 CTATTGGACAGTTAGCGTGCG 59.412 52.381 0.00 0.00 0.00 5.34
62 63 2.888594 TCTATTGGACAGTTAGCGTGC 58.111 47.619 0.00 0.00 0.00 5.34
63 64 5.580691 TGAAATCTATTGGACAGTTAGCGTG 59.419 40.000 0.00 0.00 0.00 5.34
64 65 5.730550 TGAAATCTATTGGACAGTTAGCGT 58.269 37.500 0.00 0.00 0.00 5.07
65 66 6.851222 ATGAAATCTATTGGACAGTTAGCG 57.149 37.500 0.00 0.00 0.00 4.26
66 67 9.860898 AAAAATGAAATCTATTGGACAGTTAGC 57.139 29.630 0.00 0.00 0.00 3.09
78 79 8.925700 GGCGAACAAAAGAAAAATGAAATCTAT 58.074 29.630 0.00 0.00 0.00 1.98
79 80 7.383843 GGGCGAACAAAAGAAAAATGAAATCTA 59.616 33.333 0.00 0.00 0.00 1.98
80 81 6.202762 GGGCGAACAAAAGAAAAATGAAATCT 59.797 34.615 0.00 0.00 0.00 2.40
81 82 6.362686 GGGCGAACAAAAGAAAAATGAAATC 58.637 36.000 0.00 0.00 0.00 2.17
82 83 5.050431 CGGGCGAACAAAAGAAAAATGAAAT 60.050 36.000 0.00 0.00 0.00 2.17
83 84 4.268884 CGGGCGAACAAAAGAAAAATGAAA 59.731 37.500 0.00 0.00 0.00 2.69
84 85 3.799420 CGGGCGAACAAAAGAAAAATGAA 59.201 39.130 0.00 0.00 0.00 2.57
85 86 3.376540 CGGGCGAACAAAAGAAAAATGA 58.623 40.909 0.00 0.00 0.00 2.57
86 87 2.096958 GCGGGCGAACAAAAGAAAAATG 60.097 45.455 0.00 0.00 0.00 2.32
87 88 2.131972 GCGGGCGAACAAAAGAAAAAT 58.868 42.857 0.00 0.00 0.00 1.82
88 89 1.562017 GCGGGCGAACAAAAGAAAAA 58.438 45.000 0.00 0.00 0.00 1.94
89 90 0.249114 GGCGGGCGAACAAAAGAAAA 60.249 50.000 0.00 0.00 0.00 2.29
90 91 1.360911 GGCGGGCGAACAAAAGAAA 59.639 52.632 0.00 0.00 0.00 2.52
91 92 2.557372 GGGCGGGCGAACAAAAGAA 61.557 57.895 0.00 0.00 0.00 2.52
92 93 2.981350 GGGCGGGCGAACAAAAGA 60.981 61.111 0.00 0.00 0.00 2.52
93 94 4.398598 CGGGCGGGCGAACAAAAG 62.399 66.667 0.00 0.00 0.00 2.27
94 95 4.931633 TCGGGCGGGCGAACAAAA 62.932 61.111 0.00 0.00 0.00 2.44
128 129 3.519930 GGAGGAGGCGACGAGGTC 61.520 72.222 0.00 0.00 0.00 3.85
155 156 3.355957 AAGGCCCCAGCAGATGAGC 62.356 63.158 0.00 0.00 42.56 4.26
156 157 1.153005 GAAGGCCCCAGCAGATGAG 60.153 63.158 0.00 0.00 42.56 2.90
157 158 3.001514 GAAGGCCCCAGCAGATGA 58.998 61.111 0.00 0.00 42.56 2.92
158 159 2.515523 CGAAGGCCCCAGCAGATG 60.516 66.667 0.00 0.00 42.56 2.90
159 160 4.496336 GCGAAGGCCCCAGCAGAT 62.496 66.667 0.00 0.00 42.56 2.90
164 165 4.020617 TGTCAGCGAAGGCCCCAG 62.021 66.667 0.00 0.00 41.24 4.45
165 166 4.329545 GTGTCAGCGAAGGCCCCA 62.330 66.667 0.00 0.00 41.24 4.96
167 168 4.373116 TCGTGTCAGCGAAGGCCC 62.373 66.667 0.00 0.00 41.24 5.80
168 169 2.209064 TAGTCGTGTCAGCGAAGGCC 62.209 60.000 0.00 0.00 42.82 5.19
169 170 1.071567 GTAGTCGTGTCAGCGAAGGC 61.072 60.000 0.00 0.00 42.82 4.35
170 171 0.456312 GGTAGTCGTGTCAGCGAAGG 60.456 60.000 0.00 0.00 42.82 3.46
171 172 0.793478 CGGTAGTCGTGTCAGCGAAG 60.793 60.000 0.00 0.00 42.82 3.79
172 173 1.208358 CGGTAGTCGTGTCAGCGAA 59.792 57.895 0.00 0.00 42.82 4.70
173 174 2.865308 CGGTAGTCGTGTCAGCGA 59.135 61.111 0.00 0.00 38.68 4.93
193 194 2.279054 GGGCGACGACGGATAACC 60.279 66.667 9.67 0.83 40.15 2.85
194 195 1.588139 CAGGGCGACGACGGATAAC 60.588 63.158 9.67 0.00 40.15 1.89
195 196 2.777972 CCAGGGCGACGACGGATAA 61.778 63.158 9.67 0.00 40.15 1.75
196 197 3.214123 CCAGGGCGACGACGGATA 61.214 66.667 9.67 0.00 40.15 2.59
199 200 4.675029 AAACCAGGGCGACGACGG 62.675 66.667 9.67 0.00 40.15 4.79
200 201 2.663852 AAAACCAGGGCGACGACG 60.664 61.111 2.12 2.12 42.93 5.12
201 202 2.943653 CAAAACCAGGGCGACGAC 59.056 61.111 0.00 0.00 0.00 4.34
202 203 2.975799 GCAAAACCAGGGCGACGA 60.976 61.111 0.00 0.00 0.00 4.20
203 204 4.038080 GGCAAAACCAGGGCGACG 62.038 66.667 0.00 0.00 38.86 5.12
204 205 2.757980 TAGGGCAAAACCAGGGCGAC 62.758 60.000 0.00 0.00 42.05 5.19
205 206 2.530672 TAGGGCAAAACCAGGGCGA 61.531 57.895 0.00 0.00 42.05 5.54
206 207 2.034999 TAGGGCAAAACCAGGGCG 59.965 61.111 0.00 0.00 42.05 6.13
207 208 1.982395 GGTAGGGCAAAACCAGGGC 60.982 63.158 0.00 0.00 42.05 5.19
208 209 1.304962 GGGTAGGGCAAAACCAGGG 60.305 63.158 4.79 0.00 42.05 4.45
209 210 1.304962 GGGGTAGGGCAAAACCAGG 60.305 63.158 4.79 0.00 42.05 4.45
210 211 0.611896 CTGGGGTAGGGCAAAACCAG 60.612 60.000 0.00 0.00 42.05 4.00
211 212 1.462928 CTGGGGTAGGGCAAAACCA 59.537 57.895 4.79 0.00 42.05 3.67
212 213 1.982395 GCTGGGGTAGGGCAAAACC 60.982 63.158 0.00 0.00 37.93 3.27
213 214 1.982395 GGCTGGGGTAGGGCAAAAC 60.982 63.158 0.00 0.00 0.00 2.43
214 215 2.443324 GGCTGGGGTAGGGCAAAA 59.557 61.111 0.00 0.00 0.00 2.44
215 216 4.041762 CGGCTGGGGTAGGGCAAA 62.042 66.667 0.00 0.00 0.00 3.68
217 218 4.815973 ATCGGCTGGGGTAGGGCA 62.816 66.667 0.00 0.00 0.00 5.36
218 219 3.942439 GATCGGCTGGGGTAGGGC 61.942 72.222 0.00 0.00 0.00 5.19
219 220 3.616721 CGATCGGCTGGGGTAGGG 61.617 72.222 7.38 0.00 0.00 3.53
220 221 4.301027 GCGATCGGCTGGGGTAGG 62.301 72.222 18.30 0.00 39.11 3.18
221 222 4.301027 GGCGATCGGCTGGGGTAG 62.301 72.222 31.96 0.00 42.94 3.18
238 239 4.025401 GGGACAGCAACCGCAACG 62.025 66.667 0.00 0.00 42.27 4.10
239 240 2.904866 TGGGACAGCAACCGCAAC 60.905 61.111 0.00 0.00 42.27 4.17
250 251 1.065199 GTCAGATCTGGCAATGGGACA 60.065 52.381 22.39 0.00 37.81 4.02
251 252 1.673168 GTCAGATCTGGCAATGGGAC 58.327 55.000 22.39 6.80 34.82 4.46
252 253 0.548031 GGTCAGATCTGGCAATGGGA 59.452 55.000 27.64 0.82 36.81 4.37
253 254 0.816825 CGGTCAGATCTGGCAATGGG 60.817 60.000 27.64 8.19 36.81 4.00
254 255 1.442526 GCGGTCAGATCTGGCAATGG 61.443 60.000 27.64 14.59 36.81 3.16
255 256 0.463295 AGCGGTCAGATCTGGCAATG 60.463 55.000 27.64 17.44 36.81 2.82
256 257 0.179062 GAGCGGTCAGATCTGGCAAT 60.179 55.000 27.64 13.20 36.81 3.56
257 258 1.219124 GAGCGGTCAGATCTGGCAA 59.781 57.895 27.64 3.96 36.81 4.52
258 259 2.725312 GGAGCGGTCAGATCTGGCA 61.725 63.158 27.64 4.75 36.81 4.92
259 260 2.037620 ATGGAGCGGTCAGATCTGGC 62.038 60.000 22.42 20.93 35.20 4.85
260 261 0.033228 GATGGAGCGGTCAGATCTGG 59.967 60.000 22.42 7.93 35.20 3.86
261 262 0.318529 CGATGGAGCGGTCAGATCTG 60.319 60.000 17.07 17.07 35.20 2.90
262 263 2.037053 CGATGGAGCGGTCAGATCT 58.963 57.895 17.59 0.00 35.20 2.75
263 264 1.663074 GCGATGGAGCGGTCAGATC 60.663 63.158 17.59 14.99 33.78 2.75
264 265 2.419198 GCGATGGAGCGGTCAGAT 59.581 61.111 17.59 7.52 0.00 2.90
265 266 3.838271 GGCGATGGAGCGGTCAGA 61.838 66.667 17.59 2.18 38.18 3.27
266 267 4.147449 TGGCGATGGAGCGGTCAG 62.147 66.667 17.59 5.66 38.18 3.51
267 268 4.451150 GTGGCGATGGAGCGGTCA 62.451 66.667 17.59 3.01 38.18 4.02
273 274 4.899239 GAGGCGGTGGCGATGGAG 62.899 72.222 0.00 0.00 41.24 3.86
300 301 3.830192 CCGATTTGGGCAGGCAGC 61.830 66.667 0.00 0.00 44.65 5.25
308 309 1.681264 GGTCAATTAGGCCGATTTGGG 59.319 52.381 17.11 3.46 38.63 4.12
316 317 1.300481 GAGAAGCGGTCAATTAGGCC 58.700 55.000 0.00 0.00 39.21 5.19
317 318 1.300481 GGAGAAGCGGTCAATTAGGC 58.700 55.000 0.00 0.00 0.00 3.93
318 319 1.571919 CGGAGAAGCGGTCAATTAGG 58.428 55.000 0.00 0.00 0.00 2.69
319 320 0.931005 GCGGAGAAGCGGTCAATTAG 59.069 55.000 0.00 0.00 0.00 1.73
320 321 0.461339 GGCGGAGAAGCGGTCAATTA 60.461 55.000 0.00 0.00 38.18 1.40
321 322 1.745489 GGCGGAGAAGCGGTCAATT 60.745 57.895 0.00 0.00 38.18 2.32
322 323 2.125106 GGCGGAGAAGCGGTCAAT 60.125 61.111 0.00 0.00 38.18 2.57
323 324 4.735132 CGGCGGAGAAGCGGTCAA 62.735 66.667 0.00 0.00 38.18 3.18
328 329 4.771356 TTCGACGGCGGAGAAGCG 62.771 66.667 12.58 5.05 38.18 4.68
329 330 2.202756 ATTCGACGGCGGAGAAGC 60.203 61.111 12.58 0.07 38.28 3.86
330 331 1.138883 TGATTCGACGGCGGAGAAG 59.861 57.895 12.58 4.63 38.28 2.85
331 332 1.153901 GTGATTCGACGGCGGAGAA 60.154 57.895 12.58 18.49 38.28 2.87
332 333 2.488355 GTGATTCGACGGCGGAGA 59.512 61.111 12.58 7.22 38.28 3.71
333 334 2.582498 GGTGATTCGACGGCGGAG 60.582 66.667 12.58 4.43 38.28 4.63
334 335 4.485834 CGGTGATTCGACGGCGGA 62.486 66.667 12.58 0.00 38.28 5.54
349 350 4.827087 AGATCAGCAGCACGGCGG 62.827 66.667 13.24 0.66 39.27 6.13
350 351 3.561213 CAGATCAGCAGCACGGCG 61.561 66.667 4.80 4.80 39.27 6.46
351 352 2.125391 TCAGATCAGCAGCACGGC 60.125 61.111 0.00 0.00 0.00 5.68
352 353 2.172372 GCTCAGATCAGCAGCACGG 61.172 63.158 0.00 0.00 39.43 4.94
353 354 1.146957 GAGCTCAGATCAGCAGCACG 61.147 60.000 9.40 0.00 42.40 5.34
354 355 0.810823 GGAGCTCAGATCAGCAGCAC 60.811 60.000 17.19 4.13 42.40 4.40
355 356 1.521141 GGAGCTCAGATCAGCAGCA 59.479 57.895 17.19 0.00 42.40 4.41
356 357 1.227615 GGGAGCTCAGATCAGCAGC 60.228 63.158 17.19 5.31 42.40 5.25
357 358 1.049855 AGGGGAGCTCAGATCAGCAG 61.050 60.000 17.19 0.00 42.40 4.24
358 359 1.002662 AGGGGAGCTCAGATCAGCA 59.997 57.895 17.19 0.00 42.40 4.41
359 360 1.747774 GAGGGGAGCTCAGATCAGC 59.252 63.158 17.19 0.00 39.99 4.26
360 361 2.040330 CGAGGGGAGCTCAGATCAG 58.960 63.158 17.19 0.00 0.00 2.90
361 362 2.130426 GCGAGGGGAGCTCAGATCA 61.130 63.158 17.19 0.00 0.00 2.92
362 363 1.832167 AGCGAGGGGAGCTCAGATC 60.832 63.158 17.19 8.54 41.83 2.75
363 364 2.132996 CAGCGAGGGGAGCTCAGAT 61.133 63.158 17.19 0.00 44.06 2.90
364 365 2.757508 CAGCGAGGGGAGCTCAGA 60.758 66.667 17.19 0.00 44.06 3.27
365 366 4.527583 GCAGCGAGGGGAGCTCAG 62.528 72.222 17.19 2.13 44.06 3.35
375 376 4.785453 GAACCTGGGGGCAGCGAG 62.785 72.222 0.00 0.00 35.63 5.03
378 379 4.785453 CTCGAACCTGGGGGCAGC 62.785 72.222 0.00 0.00 35.63 5.25
379 380 4.785453 GCTCGAACCTGGGGGCAG 62.785 72.222 0.00 0.00 35.63 4.85
385 386 4.680237 TGTGCGGCTCGAACCTGG 62.680 66.667 2.88 0.00 33.94 4.45
386 387 3.414700 GTGTGCGGCTCGAACCTG 61.415 66.667 2.88 0.00 33.94 4.00
387 388 3.923864 TGTGTGCGGCTCGAACCT 61.924 61.111 2.88 0.00 33.94 3.50
388 389 3.712881 GTGTGTGCGGCTCGAACC 61.713 66.667 0.00 0.00 33.94 3.62
389 390 4.059459 CGTGTGTGCGGCTCGAAC 62.059 66.667 0.00 0.00 35.71 3.95
410 411 4.824515 AGAGGAGCGTCGGAGGGG 62.825 72.222 0.00 0.00 0.00 4.79
411 412 3.213402 GAGAGGAGCGTCGGAGGG 61.213 72.222 0.00 0.00 0.00 4.30
412 413 2.124487 AGAGAGGAGCGTCGGAGG 60.124 66.667 0.00 0.00 0.00 4.30
413 414 1.153249 AGAGAGAGGAGCGTCGGAG 60.153 63.158 0.00 0.00 0.00 4.63
414 415 1.450491 CAGAGAGAGGAGCGTCGGA 60.450 63.158 0.00 0.00 0.00 4.55
415 416 3.106552 CAGAGAGAGGAGCGTCGG 58.893 66.667 0.00 0.00 0.00 4.79
416 417 2.407210 GCAGAGAGAGGAGCGTCG 59.593 66.667 0.00 0.00 0.00 5.12
417 418 1.724582 GAGGCAGAGAGAGGAGCGTC 61.725 65.000 0.00 0.00 35.21 5.19
418 419 1.752694 GAGGCAGAGAGAGGAGCGT 60.753 63.158 0.00 0.00 0.00 5.07
419 420 2.833533 CGAGGCAGAGAGAGGAGCG 61.834 68.421 0.00 0.00 0.00 5.03
420 421 1.034838 TTCGAGGCAGAGAGAGGAGC 61.035 60.000 0.00 0.00 0.00 4.70
421 422 1.691196 ATTCGAGGCAGAGAGAGGAG 58.309 55.000 0.00 0.00 0.00 3.69
422 423 1.753649 CAATTCGAGGCAGAGAGAGGA 59.246 52.381 0.00 0.00 0.00 3.71
423 424 1.805871 GCAATTCGAGGCAGAGAGAGG 60.806 57.143 1.52 0.00 0.00 3.69
424 425 1.569708 GCAATTCGAGGCAGAGAGAG 58.430 55.000 1.52 0.00 0.00 3.20
425 426 0.176680 GGCAATTCGAGGCAGAGAGA 59.823 55.000 7.87 0.00 0.00 3.10
426 427 1.150567 CGGCAATTCGAGGCAGAGAG 61.151 60.000 7.87 0.00 0.00 3.20
427 428 1.153568 CGGCAATTCGAGGCAGAGA 60.154 57.895 7.87 0.00 0.00 3.10
428 429 2.817423 GCGGCAATTCGAGGCAGAG 61.817 63.158 9.39 2.04 0.00 3.35
429 430 2.819595 GCGGCAATTCGAGGCAGA 60.820 61.111 9.39 0.00 0.00 4.26
430 431 2.817423 GAGCGGCAATTCGAGGCAG 61.817 63.158 1.45 5.17 0.00 4.85
431 432 2.819595 GAGCGGCAATTCGAGGCA 60.820 61.111 1.45 0.00 0.00 4.75
432 433 3.577313 GGAGCGGCAATTCGAGGC 61.577 66.667 1.45 0.00 0.00 4.70
433 434 1.884926 GAGGAGCGGCAATTCGAGG 60.885 63.158 1.45 0.00 0.00 4.63
434 435 1.884926 GGAGGAGCGGCAATTCGAG 60.885 63.158 1.45 0.00 0.00 4.04
435 436 2.186903 GGAGGAGCGGCAATTCGA 59.813 61.111 1.45 0.00 0.00 3.71
436 437 3.264897 CGGAGGAGCGGCAATTCG 61.265 66.667 1.45 0.00 0.00 3.34
437 438 3.577313 GCGGAGGAGCGGCAATTC 61.577 66.667 1.45 0.00 41.96 2.17
438 439 4.101448 AGCGGAGGAGCGGCAATT 62.101 61.111 1.45 0.00 44.52 2.32
439 440 4.845580 CAGCGGAGGAGCGGCAAT 62.846 66.667 1.45 0.00 44.52 3.56
446 447 4.079850 AGTGCAGCAGCGGAGGAG 62.080 66.667 0.00 0.00 46.23 3.69
447 448 4.383861 CAGTGCAGCAGCGGAGGA 62.384 66.667 0.00 0.00 46.23 3.71
457 458 4.099170 GAAGCAGCGGCAGTGCAG 62.099 66.667 18.61 14.87 43.82 4.41
471 472 3.264897 CGAATCAGGGCGGCGAAG 61.265 66.667 12.98 0.00 0.00 3.79
478 479 4.179579 GGCAACGCGAATCAGGGC 62.180 66.667 15.93 4.94 0.00 5.19
499 500 2.271173 GGGGTGGTGAATCGGGAC 59.729 66.667 0.00 0.00 0.00 4.46
500 501 3.012722 GGGGGTGGTGAATCGGGA 61.013 66.667 0.00 0.00 0.00 5.14
501 502 4.483243 CGGGGGTGGTGAATCGGG 62.483 72.222 0.00 0.00 0.00 5.14
531 532 4.666253 CTGGGCAGTGGTGGGGTG 62.666 72.222 0.00 0.00 0.00 4.61
532 533 4.918360 TCTGGGCAGTGGTGGGGT 62.918 66.667 0.00 0.00 0.00 4.95
533 534 4.351054 GTCTGGGCAGTGGTGGGG 62.351 72.222 0.00 0.00 0.00 4.96
534 535 4.704833 CGTCTGGGCAGTGGTGGG 62.705 72.222 0.00 0.00 0.00 4.61
536 537 4.624364 TGCGTCTGGGCAGTGGTG 62.624 66.667 0.00 0.00 38.17 4.17
548 549 4.778143 ATTCGGGGTGGCTGCGTC 62.778 66.667 0.00 0.00 0.00 5.19
549 550 4.778143 GATTCGGGGTGGCTGCGT 62.778 66.667 0.00 0.00 0.00 5.24
551 552 4.778143 ACGATTCGGGGTGGCTGC 62.778 66.667 11.29 0.00 0.00 5.25
552 553 2.819595 CACGATTCGGGGTGGCTG 60.820 66.667 11.29 0.00 0.00 4.85
553 554 4.778143 GCACGATTCGGGGTGGCT 62.778 66.667 10.81 0.00 34.76 4.75
589 590 3.750373 ATTAATCGGCGGCGGCAGT 62.750 57.895 32.59 20.28 42.47 4.40
590 591 2.058829 AAATTAATCGGCGGCGGCAG 62.059 55.000 32.59 23.81 42.47 4.85
591 592 1.658686 AAAATTAATCGGCGGCGGCA 61.659 50.000 32.59 19.83 42.47 5.69
592 593 0.526739 AAAAATTAATCGGCGGCGGC 60.527 50.000 31.73 24.75 38.90 6.53
593 594 2.223294 TGTAAAAATTAATCGGCGGCGG 60.223 45.455 31.73 13.01 0.00 6.13
594 595 3.054276 TGTAAAAATTAATCGGCGGCG 57.946 42.857 27.15 27.15 0.00 6.46
595 596 5.723237 CAAATGTAAAAATTAATCGGCGGC 58.277 37.500 7.21 0.00 0.00 6.53
596 597 5.289675 TGCAAATGTAAAAATTAATCGGCGG 59.710 36.000 7.21 0.00 0.00 6.13
597 598 6.034470 ACTGCAAATGTAAAAATTAATCGGCG 59.966 34.615 0.00 0.00 0.00 6.46
598 599 7.289587 ACTGCAAATGTAAAAATTAATCGGC 57.710 32.000 0.00 0.00 0.00 5.54
599 600 9.527566 CAAACTGCAAATGTAAAAATTAATCGG 57.472 29.630 0.00 0.00 0.00 4.18
600 601 9.039500 GCAAACTGCAAATGTAAAAATTAATCG 57.961 29.630 0.00 0.00 44.26 3.34
618 619 5.473039 ACTCCAATAGAAAATGCAAACTGC 58.527 37.500 0.00 0.00 45.29 4.40
619 620 6.128742 GCAACTCCAATAGAAAATGCAAACTG 60.129 38.462 0.00 0.00 33.00 3.16
620 621 5.928264 GCAACTCCAATAGAAAATGCAAACT 59.072 36.000 0.00 0.00 33.00 2.66
621 622 5.928264 AGCAACTCCAATAGAAAATGCAAAC 59.072 36.000 0.00 0.00 35.11 2.93
622 623 6.015180 AGAGCAACTCCAATAGAAAATGCAAA 60.015 34.615 0.00 0.00 35.11 3.68
623 624 5.477984 AGAGCAACTCCAATAGAAAATGCAA 59.522 36.000 0.00 0.00 35.11 4.08
624 625 5.012239 AGAGCAACTCCAATAGAAAATGCA 58.988 37.500 0.00 0.00 35.11 3.96
625 626 5.573337 AGAGCAACTCCAATAGAAAATGC 57.427 39.130 0.00 0.00 0.00 3.56
631 632 9.988815 GAGATATAAAAGAGCAACTCCAATAGA 57.011 33.333 0.00 0.00 0.00 1.98
632 633 9.213799 GGAGATATAAAAGAGCAACTCCAATAG 57.786 37.037 0.00 0.00 41.28 1.73
633 634 7.872993 CGGAGATATAAAAGAGCAACTCCAATA 59.127 37.037 0.00 0.00 41.58 1.90
634 635 6.708054 CGGAGATATAAAAGAGCAACTCCAAT 59.292 38.462 0.00 0.00 41.58 3.16
635 636 6.049149 CGGAGATATAAAAGAGCAACTCCAA 58.951 40.000 0.00 0.00 41.58 3.53
636 637 5.128827 ACGGAGATATAAAAGAGCAACTCCA 59.871 40.000 0.00 0.00 41.58 3.86
637 638 5.602628 ACGGAGATATAAAAGAGCAACTCC 58.397 41.667 0.00 0.00 39.16 3.85
638 639 7.541122 AAACGGAGATATAAAAGAGCAACTC 57.459 36.000 0.00 0.00 0.00 3.01
639 640 7.626452 GCAAAACGGAGATATAAAAGAGCAACT 60.626 37.037 0.00 0.00 0.00 3.16
640 641 6.469275 GCAAAACGGAGATATAAAAGAGCAAC 59.531 38.462 0.00 0.00 0.00 4.17
641 642 6.150307 TGCAAAACGGAGATATAAAAGAGCAA 59.850 34.615 0.00 0.00 0.00 3.91
642 643 5.645929 TGCAAAACGGAGATATAAAAGAGCA 59.354 36.000 0.00 0.00 0.00 4.26
643 644 6.119144 TGCAAAACGGAGATATAAAAGAGC 57.881 37.500 0.00 0.00 0.00 4.09
644 645 7.919690 TGATGCAAAACGGAGATATAAAAGAG 58.080 34.615 0.00 0.00 0.00 2.85
645 646 7.857734 TGATGCAAAACGGAGATATAAAAGA 57.142 32.000 0.00 0.00 0.00 2.52
646 647 8.562892 AGATGATGCAAAACGGAGATATAAAAG 58.437 33.333 0.00 0.00 0.00 2.27
647 648 8.344831 CAGATGATGCAAAACGGAGATATAAAA 58.655 33.333 0.00 0.00 0.00 1.52
648 649 7.864686 CAGATGATGCAAAACGGAGATATAAA 58.135 34.615 0.00 0.00 0.00 1.40
649 650 7.425577 CAGATGATGCAAAACGGAGATATAA 57.574 36.000 0.00 0.00 0.00 0.98
651 652 5.936686 CAGATGATGCAAAACGGAGATAT 57.063 39.130 0.00 0.00 0.00 1.63
665 666 1.022735 GCCAACTCCAGCAGATGATG 58.977 55.000 0.00 0.00 0.00 3.07
666 667 0.463295 CGCCAACTCCAGCAGATGAT 60.463 55.000 0.00 0.00 0.00 2.45
667 668 1.078918 CGCCAACTCCAGCAGATGA 60.079 57.895 0.00 0.00 0.00 2.92
668 669 0.957395 AACGCCAACTCCAGCAGATG 60.957 55.000 0.00 0.00 0.00 2.90
669 670 0.250901 AAACGCCAACTCCAGCAGAT 60.251 50.000 0.00 0.00 0.00 2.90
670 671 0.465460 AAAACGCCAACTCCAGCAGA 60.465 50.000 0.00 0.00 0.00 4.26
671 672 0.385390 AAAAACGCCAACTCCAGCAG 59.615 50.000 0.00 0.00 0.00 4.24
672 673 2.499214 AAAAACGCCAACTCCAGCA 58.501 47.368 0.00 0.00 0.00 4.41
766 767 0.102481 TTCGGTCCGCTTAGAGCATC 59.898 55.000 6.34 0.00 42.58 3.91
767 768 0.179108 GTTCGGTCCGCTTAGAGCAT 60.179 55.000 6.34 0.00 42.58 3.79
768 769 1.214589 GTTCGGTCCGCTTAGAGCA 59.785 57.895 6.34 0.00 42.58 4.26
769 770 1.518792 GGTTCGGTCCGCTTAGAGC 60.519 63.158 6.34 0.00 38.02 4.09
770 771 0.245539 TTGGTTCGGTCCGCTTAGAG 59.754 55.000 6.34 0.00 0.00 2.43
771 772 0.245539 CTTGGTTCGGTCCGCTTAGA 59.754 55.000 6.34 0.00 0.00 2.10
772 773 0.739813 CCTTGGTTCGGTCCGCTTAG 60.740 60.000 6.34 0.00 0.00 2.18
790 791 4.232221 TCATCGTTTCGTAAGTGAAGTCC 58.768 43.478 0.00 0.00 39.48 3.85
793 794 8.409690 CAATTTTTCATCGTTTCGTAAGTGAAG 58.590 33.333 0.00 0.00 39.48 3.02
800 801 5.511571 TGCACAATTTTTCATCGTTTCGTA 58.488 33.333 0.00 0.00 0.00 3.43
837 841 1.581934 CAGCGACAAAGTGTTCTCCA 58.418 50.000 0.00 0.00 0.00 3.86
838 842 0.868406 CCAGCGACAAAGTGTTCTCC 59.132 55.000 0.00 0.00 0.00 3.71
842 846 1.029408 TGCACCAGCGACAAAGTGTT 61.029 50.000 0.00 0.00 46.23 3.32
845 849 1.893808 CCTGCACCAGCGACAAAGT 60.894 57.895 0.00 0.00 46.23 2.66
869 873 1.986378 CTCGTCAGATTGTTCACGGTC 59.014 52.381 0.00 0.00 33.02 4.79
907 911 3.502595 TCGTTGGATATCCTCTCATCGTC 59.497 47.826 22.35 2.48 36.82 4.20
1224 1231 3.999285 ACCACCTCCTCCTCCGCT 61.999 66.667 0.00 0.00 0.00 5.52
1365 1375 4.843220 AGAAACTGAATGGCTGAAACAG 57.157 40.909 0.00 0.00 35.14 3.16
1374 1384 6.414079 CATCGAACGATAAGAAACTGAATGG 58.586 40.000 9.33 0.00 32.93 3.16
1428 1438 4.513442 ACAAAGCTGACTAACTGAACACA 58.487 39.130 0.00 0.00 0.00 3.72
1460 1470 5.689383 ATTAACCAACACTGCTACAGTTG 57.311 39.130 0.00 0.00 42.59 3.16
1688 1699 4.753233 CTCGACACTCAGAAATCCAATCT 58.247 43.478 0.00 0.00 0.00 2.40
1701 1712 0.173708 AAATCCCTCGCTCGACACTC 59.826 55.000 0.00 0.00 0.00 3.51
1907 1922 5.624738 CGGAGAAGTAAGCTGATACCAAACT 60.625 44.000 0.00 0.00 0.00 2.66
1927 1942 5.679734 ATAGCAAATAACAAGCATCGGAG 57.320 39.130 0.00 0.00 0.00 4.63
1990 2005 1.277273 CCACTCTTCTCCTGCATGACA 59.723 52.381 0.00 0.00 0.00 3.58
2043 2067 3.937706 CCTTTCTCTGTATCTTGCCAGTG 59.062 47.826 0.00 0.00 0.00 3.66
2292 2316 6.893020 ACTAAGGGATTACTCAGATGGTTT 57.107 37.500 0.00 0.00 0.00 3.27
2335 2361 4.715527 ATACTGTCGGACACTAGGAAAC 57.284 45.455 6.76 0.00 0.00 2.78
2357 2383 3.383185 GGTCAACAAAATGGTGAAGTCCA 59.617 43.478 0.00 0.00 46.88 4.02
2390 2416 3.005367 TGAATGCTAGCATGATGCCATTG 59.995 43.478 30.19 8.19 46.52 2.82
2391 2417 3.227614 TGAATGCTAGCATGATGCCATT 58.772 40.909 30.19 15.83 46.52 3.16
2433 2459 8.748412 TCATTTAATTACTTTGGTTGGATCTGG 58.252 33.333 0.00 0.00 0.00 3.86
2462 2489 5.879777 CACTTCATATCACATGGTGTGGTAA 59.120 40.000 7.10 0.00 45.86 2.85
2495 2522 1.143620 CTGCTAGGCCAGACAGAGC 59.856 63.158 5.01 4.12 34.77 4.09
2515 2542 6.381801 CAGATGTGTTGTCAAAATAAGACCC 58.618 40.000 0.00 0.00 35.15 4.46
2652 2687 7.360946 GGCTACAGTCACTATTACCAAAAACAG 60.361 40.741 0.00 0.00 0.00 3.16
2661 2696 7.042335 AGTTGATTGGCTACAGTCACTATTAC 58.958 38.462 0.00 0.00 42.17 1.89
2682 2717 5.010012 ACCAGCATCTTCCTGTTAAAAGTTG 59.990 40.000 0.00 0.00 0.00 3.16
3099 3134 5.878332 AACATCGTCATGCAATTAGACAA 57.122 34.783 0.00 0.00 32.57 3.18
3188 3223 8.752005 ATGCCTAAGTACAACAAATCATATGT 57.248 30.769 1.90 0.00 0.00 2.29
3195 3230 7.951591 AGAACAAATGCCTAAGTACAACAAAT 58.048 30.769 0.00 0.00 0.00 2.32
3201 3236 7.817418 AGAAAAGAACAAATGCCTAAGTACA 57.183 32.000 0.00 0.00 0.00 2.90
3268 3303 7.255242 CCATGCTAGTTAAGATAACAATGTGGG 60.255 40.741 3.37 0.00 0.00 4.61
3309 3344 5.193679 ACCTAGGGAATTACTGAACAATGC 58.806 41.667 14.81 0.00 0.00 3.56
3313 3348 5.659971 GGTCTACCTAGGGAATTACTGAACA 59.340 44.000 14.81 0.00 0.00 3.18
3348 3383 3.626217 GCCTCCACGTTTTCTTAATAGGG 59.374 47.826 0.00 0.00 0.00 3.53
3370 3405 3.132289 ACATACATAACTGTGAGTCGGGG 59.868 47.826 0.00 0.00 36.79 5.73
3442 5176 1.153469 GCAGACACCTAGAGCAGCC 60.153 63.158 0.00 0.00 0.00 4.85
3684 5419 3.096092 TGTTGCCTTTTCCCATATGTCC 58.904 45.455 1.24 0.00 0.00 4.02
3887 5623 2.235891 GCCCTTTTCCCTCGAAGAAAA 58.764 47.619 17.42 17.42 40.08 2.29
3888 5624 1.144093 TGCCCTTTTCCCTCGAAGAAA 59.856 47.619 6.26 6.26 34.09 2.52
3894 5630 3.815809 TGTTATATGCCCTTTTCCCTCG 58.184 45.455 0.00 0.00 0.00 4.63
3979 5715 4.991153 TCTTCTCAGTATGCGAGTCAAT 57.009 40.909 0.00 0.00 34.76 2.57
4122 5858 1.956477 ACCTCATTGTTTGTGACAGGC 59.044 47.619 0.00 0.00 39.94 4.85
4274 6010 7.443575 TGTGCCATGCAAATAACAAATAAAAGT 59.556 29.630 0.00 0.00 41.47 2.66
4294 6030 2.092807 AGCATCTGATATGTGTGTGCCA 60.093 45.455 0.00 0.00 0.00 4.92
4320 6056 5.106712 GGATTCGTCAGTGATGCTAACAAAA 60.107 40.000 7.52 0.00 0.00 2.44
4331 6067 3.055891 ACATGTCATGGATTCGTCAGTGA 60.056 43.478 17.08 0.00 33.60 3.41
4333 6069 3.616956 ACATGTCATGGATTCGTCAGT 57.383 42.857 17.08 0.00 33.60 3.41
4336 6072 4.944962 TGAAACATGTCATGGATTCGTC 57.055 40.909 17.08 5.52 34.76 4.20
4342 6078 7.499292 ACTGAAATTTTGAAACATGTCATGGA 58.501 30.769 17.08 0.00 33.60 3.41
4352 6088 7.755582 AGTACTGCAACTGAAATTTTGAAAC 57.244 32.000 0.00 0.00 0.00 2.78
4367 6107 3.868369 GCCACCTCATTACAGTACTGCAA 60.868 47.826 22.90 16.84 0.00 4.08
4396 6136 2.667137 CGGATACCTCTCGATTTCAGC 58.333 52.381 0.00 0.00 0.00 4.26
4507 6247 2.344203 CGTCCTGGCCTCGACTTCT 61.344 63.158 17.30 0.00 0.00 2.85
4516 6256 4.101448 ATGGTGAGCGTCCTGGCC 62.101 66.667 0.00 0.00 0.00 5.36
4519 6259 1.153489 CCTGATGGTGAGCGTCCTG 60.153 63.158 0.93 0.00 0.00 3.86
4541 6281 1.301716 CCATCTCCCCGTTATGCCG 60.302 63.158 0.00 0.00 0.00 5.69
4621 6361 6.978674 TTAACAGACTGGGATATCTACAGG 57.021 41.667 22.84 13.05 36.57 4.00
4631 6371 5.367945 ACTGAAGTTTTAACAGACTGGGA 57.632 39.130 7.51 0.00 35.85 4.37
4643 6383 7.097192 TGCTCTACGATATGAACTGAAGTTTT 58.903 34.615 0.00 0.00 38.56 2.43
4669 6409 4.505922 GTGTATGTGCAGCAGAAGATCTAC 59.494 45.833 0.00 0.00 0.00 2.59
4712 6452 1.372499 CTCGGTTTCGTCGGAAGCA 60.372 57.895 15.36 2.51 35.32 3.91
4727 6467 3.744719 TTGGACCTCCGTCGCTCG 61.745 66.667 0.00 0.00 40.17 5.03
4770 6510 6.796426 TCTGTTGCTGACTATATAGTGTGTC 58.204 40.000 20.13 6.52 36.50 3.67
4809 6550 6.092259 GGTCTGGTCACAAACTATGTACAATC 59.908 42.308 0.00 0.00 41.46 2.67
4826 6567 1.537202 GCACTGAAATGTGGTCTGGTC 59.463 52.381 0.00 0.00 38.31 4.02
4827 6568 1.133823 TGCACTGAAATGTGGTCTGGT 60.134 47.619 0.00 0.00 38.31 4.00
4828 6569 1.608055 TGCACTGAAATGTGGTCTGG 58.392 50.000 0.00 0.00 38.31 3.86
4829 6570 2.620115 ACTTGCACTGAAATGTGGTCTG 59.380 45.455 0.00 0.00 38.31 3.51
4830 6571 2.936202 ACTTGCACTGAAATGTGGTCT 58.064 42.857 0.00 0.00 38.31 3.85
4866 6607 4.025396 CGTGATTGTATAAGGAGCTGCAAG 60.025 45.833 8.35 0.00 0.00 4.01
4871 6612 3.630769 TCGACGTGATTGTATAAGGAGCT 59.369 43.478 0.00 0.00 0.00 4.09
4872 6613 3.961182 TCGACGTGATTGTATAAGGAGC 58.039 45.455 0.00 0.00 0.00 4.70
5020 6798 2.706123 GCAAACGTCGCGGCAAATG 61.706 57.895 12.89 6.90 0.00 2.32
5027 6805 4.072088 GACCAGGCAAACGTCGCG 62.072 66.667 0.00 0.00 0.00 5.87
5161 6947 2.186826 CAATCAATCGGGTCGGGGC 61.187 63.158 0.00 0.00 0.00 5.80
5204 7005 1.227556 ATAGATCCGCACAACGCCC 60.228 57.895 0.00 0.00 41.76 6.13
5210 7011 2.548707 GCTCCAATCATAGATCCGCACA 60.549 50.000 0.00 0.00 0.00 4.57
5265 7066 1.384525 TTTTGTCCCAGGTGTTGTCG 58.615 50.000 0.00 0.00 0.00 4.35
5329 7130 3.992999 AGTGAAGATCTGATCTGGGACT 58.007 45.455 20.20 17.38 40.13 3.85
5360 7161 0.651031 GCTGGATCTTTTACGGACGC 59.349 55.000 0.00 0.00 0.00 5.19
5365 7166 0.652592 CTGCCGCTGGATCTTTTACG 59.347 55.000 0.00 0.00 0.00 3.18
5376 7177 0.179156 CCACTTTTATGCTGCCGCTG 60.179 55.000 0.70 0.00 36.97 5.18
5474 7278 4.079980 TCACGTTTCTCCATCTTTTCCA 57.920 40.909 0.00 0.00 0.00 3.53
5480 7284 5.187967 AGAGGTAATTCACGTTTCTCCATCT 59.812 40.000 0.00 0.00 0.00 2.90
5482 7286 5.422214 AGAGGTAATTCACGTTTCTCCAT 57.578 39.130 0.00 0.00 0.00 3.41
5516 7320 9.639601 AATTACAAATAGCTGAAAAGGCTTTAC 57.360 29.630 13.77 3.67 40.74 2.01
5554 7360 0.460811 TAGAAGTGCAGCGCCTCATG 60.461 55.000 2.29 0.00 0.00 3.07
5559 7365 0.375106 GACATTAGAAGTGCAGCGCC 59.625 55.000 2.29 0.00 0.00 6.53
5564 7370 3.691118 GCAATCCTGACATTAGAAGTGCA 59.309 43.478 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.