Multiple sequence alignment - TraesCS6A01G282200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G282200 chr6A 100.000 3589 0 0 1 3589 512337032 512340620 0.000000e+00 6628.0
1 TraesCS6A01G282200 chr6A 100.000 31 0 0 773 803 512337773 512337803 1.390000e-04 58.4
2 TraesCS6A01G282200 chr6A 100.000 31 0 0 742 772 512337804 512337834 1.390000e-04 58.4
3 TraesCS6A01G282200 chr6D 95.626 1349 45 10 1617 2956 371295251 371296594 0.000000e+00 2152.0
4 TraesCS6A01G282200 chr6D 95.937 763 23 2 858 1614 371294454 371295214 0.000000e+00 1230.0
5 TraesCS6A01G282200 chr6D 84.565 771 79 21 1 760 371293696 371294437 0.000000e+00 728.0
6 TraesCS6A01G282200 chr6D 91.406 128 8 1 3211 3338 371296829 371296953 4.760000e-39 172.0
7 TraesCS6A01G282200 chr6B 93.010 1359 70 16 1617 2960 556487124 556488472 0.000000e+00 1960.0
8 TraesCS6A01G282200 chr6B 93.152 774 39 2 855 1614 556486312 556487085 0.000000e+00 1123.0
9 TraesCS6A01G282200 chr6B 84.467 779 79 9 1 760 556485456 556486211 0.000000e+00 730.0
10 TraesCS6A01G282200 chr7B 85.968 620 44 14 179 772 428478175 428478777 1.090000e-174 623.0
11 TraesCS6A01G282200 chr7B 95.270 148 7 0 852 999 428478864 428479011 5.990000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G282200 chr6A 512337032 512340620 3588 False 2248.266667 6628 100.000000 1 3589 3 chr6A.!!$F1 3588
1 TraesCS6A01G282200 chr6D 371293696 371296953 3257 False 1070.500000 2152 91.883500 1 3338 4 chr6D.!!$F1 3337
2 TraesCS6A01G282200 chr6B 556485456 556488472 3016 False 1271.000000 1960 90.209667 1 2960 3 chr6B.!!$F1 2959
3 TraesCS6A01G282200 chr7B 428478175 428479011 836 False 429.000000 623 90.619000 179 999 2 chr7B.!!$F1 820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 165 1.083806 TGTTGTCATCTGGATCGCGC 61.084 55.000 0.0 0.0 0.0 6.86 F
1176 1264 1.379044 CCTTGGCATCAGTGTCCCC 60.379 63.158 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 1357 0.236711 CAGTCTTGGAAACTGCAGCG 59.763 55.0 15.27 0.0 37.88 5.18 R
2941 3087 0.102844 GAACAGGCAAAGCAACAGCA 59.897 50.0 0.00 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.044555 TCTCGCGTCCTCGGTGATT 61.045 57.895 5.77 0.00 37.56 2.57
58 59 2.822215 TCCGGTAAGGAGGATCTGC 58.178 57.895 0.00 0.00 45.98 4.26
63 64 2.093447 CGGTAAGGAGGATCTGCTGTTT 60.093 50.000 0.00 0.00 31.17 2.83
73 74 2.902705 TCTGCTGTTTGGTAACTCGT 57.097 45.000 0.00 0.00 35.24 4.18
76 77 2.612212 CTGCTGTTTGGTAACTCGTTGT 59.388 45.455 0.00 0.00 35.24 3.32
77 78 2.610374 TGCTGTTTGGTAACTCGTTGTC 59.390 45.455 0.00 0.00 35.24 3.18
80 81 3.460103 TGTTTGGTAACTCGTTGTCTCC 58.540 45.455 0.00 0.00 35.24 3.71
118 120 5.412594 TCTCATGTGTAGATGCCTGTTTTTC 59.587 40.000 0.00 0.00 0.00 2.29
138 140 2.726691 CCGTCGTTTTGCGCGATCT 61.727 57.895 12.10 0.00 40.59 2.75
139 141 1.575132 CGTCGTTTTGCGCGATCTG 60.575 57.895 12.10 0.00 40.59 2.90
162 165 1.083806 TGTTGTCATCTGGATCGCGC 61.084 55.000 0.00 0.00 0.00 6.86
163 166 1.521457 TTGTCATCTGGATCGCGCC 60.521 57.895 0.00 0.00 0.00 6.53
200 203 2.240162 GATCCGGAAGTCGTTGGCCT 62.240 60.000 9.01 0.00 37.11 5.19
242 245 4.537135 TGCGATAAAAGAGGTCTTGTCT 57.463 40.909 0.00 0.00 36.12 3.41
276 280 8.718102 TTAGATCCAGTCTTATTTTGTGCTAC 57.282 34.615 0.00 0.00 38.42 3.58
319 323 4.130118 GAGATGCCCCACATAGTGTTAAG 58.870 47.826 0.00 0.00 39.84 1.85
320 324 3.780294 AGATGCCCCACATAGTGTTAAGA 59.220 43.478 0.00 0.00 39.84 2.10
321 325 3.343941 TGCCCCACATAGTGTTAAGAC 57.656 47.619 0.00 0.00 0.00 3.01
328 332 5.943416 CCCACATAGTGTTAAGACAAATGGA 59.057 40.000 17.04 0.00 37.57 3.41
457 486 4.759782 CCGTGTCTTTCCTCATGATTAGT 58.240 43.478 0.00 0.00 0.00 2.24
459 488 6.338146 CCGTGTCTTTCCTCATGATTAGTTA 58.662 40.000 0.00 0.00 0.00 2.24
492 521 3.883669 TGTTGTACCGTGGGTTTTAGTT 58.116 40.909 0.00 0.00 37.09 2.24
659 692 3.697542 TCCGTCAGCTTGCAATACTACTA 59.302 43.478 0.00 0.00 0.00 1.82
664 697 6.291849 CGTCAGCTTGCAATACTACTATGTTC 60.292 42.308 0.00 0.00 0.00 3.18
669 702 9.265901 AGCTTGCAATACTACTATGTTCATTAG 57.734 33.333 0.00 0.00 0.00 1.73
693 726 6.761714 AGTTTTGTTGCTAGTAGGGATTATCG 59.238 38.462 0.00 0.00 0.00 2.92
703 736 7.548427 GCTAGTAGGGATTATCGGTAAATTTCC 59.452 40.741 0.00 0.00 0.00 3.13
710 743 8.201464 GGGATTATCGGTAAATTTCCAAAATGT 58.799 33.333 8.46 0.00 0.00 2.71
712 745 9.581099 GATTATCGGTAAATTTCCAAAATGTGT 57.419 29.630 0.00 0.00 0.00 3.72
713 746 9.936759 ATTATCGGTAAATTTCCAAAATGTGTT 57.063 25.926 0.00 0.00 0.00 3.32
714 747 9.765795 TTATCGGTAAATTTCCAAAATGTGTTT 57.234 25.926 0.00 0.00 0.00 2.83
715 748 7.470289 TCGGTAAATTTCCAAAATGTGTTTG 57.530 32.000 0.00 0.00 0.00 2.93
716 749 7.042335 TCGGTAAATTTCCAAAATGTGTTTGT 58.958 30.769 0.00 0.00 0.00 2.83
717 750 7.010552 TCGGTAAATTTCCAAAATGTGTTTGTG 59.989 33.333 0.00 0.00 0.00 3.33
718 751 7.010552 CGGTAAATTTCCAAAATGTGTTTGTGA 59.989 33.333 0.00 0.00 0.00 3.58
719 752 8.119845 GGTAAATTTCCAAAATGTGTTTGTGAC 58.880 33.333 0.00 0.00 0.00 3.67
720 753 7.920160 AAATTTCCAAAATGTGTTTGTGACT 57.080 28.000 0.00 0.00 0.00 3.41
721 754 6.907206 ATTTCCAAAATGTGTTTGTGACTG 57.093 33.333 0.00 0.00 0.00 3.51
722 755 3.779759 TCCAAAATGTGTTTGTGACTGC 58.220 40.909 0.00 0.00 0.00 4.40
723 756 3.446873 TCCAAAATGTGTTTGTGACTGCT 59.553 39.130 0.00 0.00 0.00 4.24
724 757 4.642437 TCCAAAATGTGTTTGTGACTGCTA 59.358 37.500 0.00 0.00 0.00 3.49
728 774 6.389830 AAATGTGTTTGTGACTGCTATTCA 57.610 33.333 0.00 0.00 0.00 2.57
760 806 4.162509 AGGGCTAACCAAGTTGTAGAGATC 59.837 45.833 1.45 0.00 43.89 2.75
761 807 4.081087 GGGCTAACCAAGTTGTAGAGATCA 60.081 45.833 1.45 0.00 39.85 2.92
764 810 6.166982 GCTAACCAAGTTGTAGAGATCACTT 58.833 40.000 0.00 0.00 0.00 3.16
765 811 6.651225 GCTAACCAAGTTGTAGAGATCACTTT 59.349 38.462 0.00 0.00 0.00 2.66
766 812 6.867662 AACCAAGTTGTAGAGATCACTTTG 57.132 37.500 0.00 0.00 0.00 2.77
767 813 5.308825 ACCAAGTTGTAGAGATCACTTTGG 58.691 41.667 15.12 15.12 35.99 3.28
768 814 5.163195 ACCAAGTTGTAGAGATCACTTTGGT 60.163 40.000 16.11 16.11 37.15 3.67
769 815 5.765182 CCAAGTTGTAGAGATCACTTTGGTT 59.235 40.000 10.67 0.00 30.58 3.67
770 816 6.073003 CCAAGTTGTAGAGATCACTTTGGTTC 60.073 42.308 10.67 0.00 30.58 3.62
771 817 6.426646 AGTTGTAGAGATCACTTTGGTTCT 57.573 37.500 0.00 0.00 0.00 3.01
772 818 6.459923 AGTTGTAGAGATCACTTTGGTTCTC 58.540 40.000 0.00 0.00 35.84 2.87
773 819 6.268847 AGTTGTAGAGATCACTTTGGTTCTCT 59.731 38.462 0.00 6.55 45.18 3.10
774 820 7.451877 AGTTGTAGAGATCACTTTGGTTCTCTA 59.548 37.037 0.00 4.78 42.31 2.43
775 821 7.776618 TGTAGAGATCACTTTGGTTCTCTAA 57.223 36.000 9.42 0.57 44.89 2.10
776 822 7.603651 TGTAGAGATCACTTTGGTTCTCTAAC 58.396 38.462 9.42 6.03 44.89 2.34
792 838 7.603651 GTTCTCTAACCAAGTTGTAGAGATCA 58.396 38.462 23.59 13.49 41.70 2.92
793 839 7.159322 TCTCTAACCAAGTTGTAGAGATCAC 57.841 40.000 21.03 0.00 38.53 3.06
794 840 6.948886 TCTCTAACCAAGTTGTAGAGATCACT 59.051 38.462 21.03 0.00 38.53 3.41
795 841 7.451877 TCTCTAACCAAGTTGTAGAGATCACTT 59.548 37.037 21.03 0.00 38.53 3.16
900 984 6.978659 TGAGATAGTACGCTTTACCTGATTTG 59.021 38.462 0.00 0.00 0.00 2.32
903 987 4.324267 AGTACGCTTTACCTGATTTGCTT 58.676 39.130 0.00 0.00 0.00 3.91
904 988 3.559238 ACGCTTTACCTGATTTGCTTG 57.441 42.857 0.00 0.00 0.00 4.01
967 1055 9.229784 CATAATTACATCAAGCTTGCTAACTTG 57.770 33.333 21.99 13.03 43.73 3.16
1141 1229 2.980233 GGCGCTTCACCACAAGCT 60.980 61.111 7.64 0.00 45.75 3.74
1176 1264 1.379044 CCTTGGCATCAGTGTCCCC 60.379 63.158 0.00 0.00 0.00 4.81
1242 1330 4.016444 AGAAAGGTGTCAAGAACTTTGCA 58.984 39.130 0.00 0.00 33.66 4.08
1395 1483 1.202348 GGTATTGGTGACTGCTTTGGC 59.798 52.381 0.00 0.00 39.26 4.52
1484 1578 3.309296 TCCCAACTCAGGTATCCATCTC 58.691 50.000 0.00 0.00 0.00 2.75
1552 1652 5.127031 GGTAATGGTGTATGTTGAATGCCTT 59.873 40.000 0.00 0.00 0.00 4.35
1582 1682 7.944729 TCAGTCTTTGAACTTCACATGAAATGC 60.945 37.037 0.00 0.00 39.70 3.56
1599 1699 4.454728 AATGCGGCATTTTACAATCTGT 57.545 36.364 21.87 0.00 28.76 3.41
1605 1705 5.220854 GCGGCATTTTACAATCTGTCTGTAT 60.221 40.000 0.00 0.00 0.00 2.29
1632 1768 9.681692 TGTTATTTTCATCATCTGTTTGTCTTG 57.318 29.630 0.00 0.00 0.00 3.02
1638 1774 7.990541 TCATCATCTGTTTGTCTTGTTTTTG 57.009 32.000 0.00 0.00 0.00 2.44
1639 1775 7.770201 TCATCATCTGTTTGTCTTGTTTTTGA 58.230 30.769 0.00 0.00 0.00 2.69
1640 1776 8.249638 TCATCATCTGTTTGTCTTGTTTTTGAA 58.750 29.630 0.00 0.00 0.00 2.69
1641 1777 9.037737 CATCATCTGTTTGTCTTGTTTTTGAAT 57.962 29.630 0.00 0.00 0.00 2.57
1642 1778 8.410030 TCATCTGTTTGTCTTGTTTTTGAATG 57.590 30.769 0.00 0.00 0.00 2.67
1643 1779 6.645700 TCTGTTTGTCTTGTTTTTGAATGC 57.354 33.333 0.00 0.00 0.00 3.56
1644 1780 5.580297 TCTGTTTGTCTTGTTTTTGAATGCC 59.420 36.000 0.00 0.00 0.00 4.40
1675 1817 6.359804 ACAGCTGATGCATTTTAGGAGATAA 58.640 36.000 23.35 0.00 42.74 1.75
1751 1893 4.843220 ATGGCTGATGCTAGTTTTATGC 57.157 40.909 0.00 0.00 39.59 3.14
1929 2074 1.228367 CCTTGCTTCTGGTGGTGCT 60.228 57.895 0.00 0.00 0.00 4.40
1947 2092 2.817396 GCTGGTGCTTCCTCGCTC 60.817 66.667 0.80 0.00 37.07 5.03
1965 2110 2.416162 GCTCTTCTTCGTGTACTCCCTG 60.416 54.545 0.00 0.00 0.00 4.45
2109 2254 4.819105 TTACCGTGGATTCAACATCTCT 57.181 40.909 0.00 0.00 0.00 3.10
2169 2314 4.376146 GACTGTATGATTCTCTGAAGCCC 58.624 47.826 0.00 0.00 0.00 5.19
2229 2374 4.403432 ACCTTGCCACATTCCATTCTATTG 59.597 41.667 0.00 0.00 0.00 1.90
2243 2388 8.868522 TCCATTCTATTGTCAAATTTCTCTGT 57.131 30.769 0.00 0.00 0.00 3.41
2270 2416 1.002430 GACAGCCACTGACATCCTTGA 59.998 52.381 0.78 0.00 35.18 3.02
2468 2614 1.831652 CGAAGGAGGGTGCCAAGTCT 61.832 60.000 0.00 0.00 0.00 3.24
2534 2680 2.184579 GGTGTGCTCTCCGGCTAC 59.815 66.667 0.00 0.00 0.00 3.58
2641 2787 1.463214 TTCCCAGTCCTGCCCTTCA 60.463 57.895 0.00 0.00 0.00 3.02
2869 3015 7.062957 CCTTAAATACATTGTCCTCCAATCCT 58.937 38.462 0.00 0.00 41.93 3.24
2932 3078 7.230849 TGACATCCTATTTCTGTTTGCATTT 57.769 32.000 0.00 0.00 0.00 2.32
2935 3081 9.638239 GACATCCTATTTCTGTTTGCATTTTTA 57.362 29.630 0.00 0.00 0.00 1.52
2936 3082 9.643693 ACATCCTATTTCTGTTTGCATTTTTAG 57.356 29.630 0.00 0.00 0.00 1.85
2937 3083 9.643693 CATCCTATTTCTGTTTGCATTTTTAGT 57.356 29.630 0.00 0.00 0.00 2.24
2960 3111 0.102844 TGCTGTTGCTTTGCCTGTTC 59.897 50.000 0.00 0.00 40.48 3.18
2961 3112 0.102844 GCTGTTGCTTTGCCTGTTCA 59.897 50.000 0.00 0.00 36.03 3.18
2962 3113 1.269936 GCTGTTGCTTTGCCTGTTCAT 60.270 47.619 0.00 0.00 36.03 2.57
2963 3114 2.030007 GCTGTTGCTTTGCCTGTTCATA 60.030 45.455 0.00 0.00 36.03 2.15
2964 3115 3.552684 GCTGTTGCTTTGCCTGTTCATAA 60.553 43.478 0.00 0.00 36.03 1.90
2965 3116 4.813027 CTGTTGCTTTGCCTGTTCATAAT 58.187 39.130 0.00 0.00 0.00 1.28
2966 3117 5.212532 TGTTGCTTTGCCTGTTCATAATT 57.787 34.783 0.00 0.00 0.00 1.40
2967 3118 5.229423 TGTTGCTTTGCCTGTTCATAATTC 58.771 37.500 0.00 0.00 0.00 2.17
2968 3119 5.010922 TGTTGCTTTGCCTGTTCATAATTCT 59.989 36.000 0.00 0.00 0.00 2.40
2969 3120 5.726980 TGCTTTGCCTGTTCATAATTCTT 57.273 34.783 0.00 0.00 0.00 2.52
2970 3121 6.832520 TGCTTTGCCTGTTCATAATTCTTA 57.167 33.333 0.00 0.00 0.00 2.10
2971 3122 7.408756 TGCTTTGCCTGTTCATAATTCTTAT 57.591 32.000 0.00 0.00 0.00 1.73
2972 3123 7.839907 TGCTTTGCCTGTTCATAATTCTTATT 58.160 30.769 0.00 0.00 0.00 1.40
2973 3124 7.760794 TGCTTTGCCTGTTCATAATTCTTATTG 59.239 33.333 0.00 0.00 0.00 1.90
2974 3125 7.975616 GCTTTGCCTGTTCATAATTCTTATTGA 59.024 33.333 0.00 0.00 0.00 2.57
2978 3129 9.806203 TGCCTGTTCATAATTCTTATTGATTTG 57.194 29.630 0.00 0.00 0.00 2.32
2982 3133 9.806203 TGTTCATAATTCTTATTGATTTGCCTG 57.194 29.630 0.00 0.00 0.00 4.85
2994 3145 5.534207 TGATTTGCCTGTGATTCTTGTTT 57.466 34.783 0.00 0.00 0.00 2.83
2999 3150 6.463995 TTGCCTGTGATTCTTGTTTTACTT 57.536 33.333 0.00 0.00 0.00 2.24
3001 3152 4.681483 GCCTGTGATTCTTGTTTTACTTGC 59.319 41.667 0.00 0.00 0.00 4.01
3007 3158 7.487829 TGTGATTCTTGTTTTACTTGCTTTGTC 59.512 33.333 0.00 0.00 0.00 3.18
3008 3159 7.702348 GTGATTCTTGTTTTACTTGCTTTGTCT 59.298 33.333 0.00 0.00 0.00 3.41
3016 3167 6.942532 TTTACTTGCTTTGTCTGTGAGATT 57.057 33.333 0.00 0.00 0.00 2.40
3018 3169 4.712476 ACTTGCTTTGTCTGTGAGATTCT 58.288 39.130 0.00 0.00 0.00 2.40
3019 3170 4.514441 ACTTGCTTTGTCTGTGAGATTCTG 59.486 41.667 0.00 0.00 0.00 3.02
3023 3174 5.410746 TGCTTTGTCTGTGAGATTCTGATTC 59.589 40.000 0.00 0.00 0.00 2.52
3024 3175 5.445673 GCTTTGTCTGTGAGATTCTGATTCG 60.446 44.000 0.00 0.00 0.00 3.34
3026 3177 4.488879 TGTCTGTGAGATTCTGATTCGTG 58.511 43.478 0.00 0.00 0.00 4.35
3028 3179 4.926238 GTCTGTGAGATTCTGATTCGTGTT 59.074 41.667 0.00 0.00 0.00 3.32
3029 3180 6.093404 GTCTGTGAGATTCTGATTCGTGTTA 58.907 40.000 0.00 0.00 0.00 2.41
3030 3181 6.252441 GTCTGTGAGATTCTGATTCGTGTTAG 59.748 42.308 0.00 0.00 0.00 2.34
3033 3184 7.027760 TGTGAGATTCTGATTCGTGTTAGTAC 58.972 38.462 0.00 0.00 0.00 2.73
3046 3198 4.252971 TGTTAGTACACTGCCTCAGTTC 57.747 45.455 0.00 0.00 42.59 3.01
3047 3199 3.006537 TGTTAGTACACTGCCTCAGTTCC 59.993 47.826 0.00 0.00 42.59 3.62
3058 3210 3.512329 TGCCTCAGTTCCGAAATGTAGTA 59.488 43.478 8.34 0.00 0.00 1.82
3059 3211 4.113354 GCCTCAGTTCCGAAATGTAGTAG 58.887 47.826 8.34 0.00 0.00 2.57
3060 3212 4.381718 GCCTCAGTTCCGAAATGTAGTAGT 60.382 45.833 8.34 0.00 0.00 2.73
3061 3213 5.103000 CCTCAGTTCCGAAATGTAGTAGTG 58.897 45.833 8.34 0.00 0.00 2.74
3062 3214 4.491676 TCAGTTCCGAAATGTAGTAGTGC 58.508 43.478 8.34 0.00 0.00 4.40
3063 3215 3.303495 CAGTTCCGAAATGTAGTAGTGCG 59.697 47.826 0.30 0.00 0.00 5.34
3064 3216 3.057033 AGTTCCGAAATGTAGTAGTGCGT 60.057 43.478 0.00 0.00 0.00 5.24
3096 3248 7.632721 ACATCACAAACTTTGATCAAATTTGC 58.367 30.769 30.53 1.14 35.15 3.68
3098 3250 4.899616 CACAAACTTTGATCAAATTTGCGC 59.100 37.500 30.53 0.00 35.15 6.09
3110 3268 6.150738 TCAAATTTGCGCAACATTTACATC 57.849 33.333 27.26 0.00 0.00 3.06
3111 3269 4.821414 AATTTGCGCAACATTTACATCG 57.179 36.364 24.99 0.00 0.00 3.84
3112 3270 2.979401 TTGCGCAACATTTACATCGT 57.021 40.000 21.02 0.00 0.00 3.73
3113 3271 4.406001 TTTGCGCAACATTTACATCGTA 57.594 36.364 24.99 0.00 0.00 3.43
3114 3272 4.608073 TTGCGCAACATTTACATCGTAT 57.392 36.364 21.02 0.00 0.00 3.06
3115 3273 4.190304 TGCGCAACATTTACATCGTATC 57.810 40.909 8.16 0.00 0.00 2.24
3116 3274 3.619038 TGCGCAACATTTACATCGTATCA 59.381 39.130 8.16 0.00 0.00 2.15
3118 3276 5.204833 GCGCAACATTTACATCGTATCATT 58.795 37.500 0.30 0.00 0.00 2.57
3120 3278 6.848800 GCGCAACATTTACATCGTATCATTAA 59.151 34.615 0.30 0.00 0.00 1.40
3121 3279 7.149351 GCGCAACATTTACATCGTATCATTAAC 60.149 37.037 0.30 0.00 0.00 2.01
3122 3280 7.848539 CGCAACATTTACATCGTATCATTAACA 59.151 33.333 0.00 0.00 0.00 2.41
3123 3281 9.497030 GCAACATTTACATCGTATCATTAACAA 57.503 29.630 0.00 0.00 0.00 2.83
3241 3442 4.881850 TGTTGGTTTTCTCTCTTCCTGTTC 59.118 41.667 0.00 0.00 0.00 3.18
3242 3443 5.126779 GTTGGTTTTCTCTCTTCCTGTTCT 58.873 41.667 0.00 0.00 0.00 3.01
3243 3444 4.962155 TGGTTTTCTCTCTTCCTGTTCTC 58.038 43.478 0.00 0.00 0.00 2.87
3247 3448 3.551635 TCTCTCTTCCTGTTCTCCCTT 57.448 47.619 0.00 0.00 0.00 3.95
3266 3467 9.618890 TCTCCCTTTACATTTGAATATCTCTTG 57.381 33.333 0.00 0.00 0.00 3.02
3288 3489 3.663493 GCGAAAACAAGACGTGTACCATC 60.663 47.826 0.00 0.00 40.60 3.51
3289 3490 3.491639 CGAAAACAAGACGTGTACCATCA 59.508 43.478 0.00 0.00 40.60 3.07
3290 3491 4.151689 CGAAAACAAGACGTGTACCATCAT 59.848 41.667 0.00 0.00 40.60 2.45
3303 3504 5.645497 GTGTACCATCATCTTTTGCTTCTCT 59.355 40.000 0.00 0.00 0.00 3.10
3305 3506 6.818644 TGTACCATCATCTTTTGCTTCTCTAC 59.181 38.462 0.00 0.00 0.00 2.59
3338 3539 7.123247 AGTGATTTGAAAATGACCCATCTAAGG 59.877 37.037 2.32 0.00 33.72 2.69
3339 3540 6.953520 TGATTTGAAAATGACCCATCTAAGGT 59.046 34.615 0.00 0.00 41.50 3.50
3340 3541 7.454380 TGATTTGAAAATGACCCATCTAAGGTT 59.546 33.333 0.00 0.00 37.88 3.50
3341 3542 7.610580 TTTGAAAATGACCCATCTAAGGTTT 57.389 32.000 0.00 0.00 37.88 3.27
3342 3543 6.588719 TGAAAATGACCCATCTAAGGTTTG 57.411 37.500 0.00 0.00 37.88 2.93
3343 3544 6.310941 TGAAAATGACCCATCTAAGGTTTGA 58.689 36.000 0.00 0.00 37.88 2.69
3344 3545 6.780031 TGAAAATGACCCATCTAAGGTTTGAA 59.220 34.615 0.00 0.00 37.88 2.69
3345 3546 7.454380 TGAAAATGACCCATCTAAGGTTTGAAT 59.546 33.333 0.00 0.00 37.88 2.57
3346 3547 7.797121 AAATGACCCATCTAAGGTTTGAATT 57.203 32.000 0.00 0.00 37.88 2.17
3347 3548 7.410120 AATGACCCATCTAAGGTTTGAATTC 57.590 36.000 0.00 0.00 37.88 2.17
3348 3549 6.139679 TGACCCATCTAAGGTTTGAATTCT 57.860 37.500 7.05 0.00 37.88 2.40
3349 3550 7.265599 TGACCCATCTAAGGTTTGAATTCTA 57.734 36.000 7.05 0.00 37.88 2.10
3350 3551 7.872138 TGACCCATCTAAGGTTTGAATTCTAT 58.128 34.615 7.05 0.00 37.88 1.98
3351 3552 7.775093 TGACCCATCTAAGGTTTGAATTCTATG 59.225 37.037 7.05 0.00 37.88 2.23
3352 3553 7.062957 ACCCATCTAAGGTTTGAATTCTATGG 58.937 38.462 7.05 1.43 32.05 2.74
3353 3554 7.062957 CCCATCTAAGGTTTGAATTCTATGGT 58.937 38.462 7.05 0.00 0.00 3.55
3354 3555 8.217799 CCCATCTAAGGTTTGAATTCTATGGTA 58.782 37.037 7.05 0.00 0.00 3.25
3355 3556 9.277783 CCATCTAAGGTTTGAATTCTATGGTAG 57.722 37.037 7.05 2.39 0.00 3.18
3356 3557 9.838339 CATCTAAGGTTTGAATTCTATGGTAGT 57.162 33.333 7.05 0.00 0.00 2.73
3360 3561 8.934023 AAGGTTTGAATTCTATGGTAGTTTGA 57.066 30.769 7.05 0.00 0.00 2.69
3361 3562 9.533831 AAGGTTTGAATTCTATGGTAGTTTGAT 57.466 29.630 7.05 0.00 0.00 2.57
3362 3563 9.533831 AGGTTTGAATTCTATGGTAGTTTGATT 57.466 29.630 7.05 0.00 0.00 2.57
3363 3564 9.788960 GGTTTGAATTCTATGGTAGTTTGATTC 57.211 33.333 7.05 0.00 0.00 2.52
3364 3565 9.788960 GTTTGAATTCTATGGTAGTTTGATTCC 57.211 33.333 7.05 0.00 0.00 3.01
3365 3566 8.519799 TTGAATTCTATGGTAGTTTGATTCCC 57.480 34.615 7.05 0.00 0.00 3.97
3366 3567 7.638444 TGAATTCTATGGTAGTTTGATTCCCA 58.362 34.615 7.05 0.00 0.00 4.37
3367 3568 7.775093 TGAATTCTATGGTAGTTTGATTCCCAG 59.225 37.037 7.05 0.00 0.00 4.45
3368 3569 5.630415 TCTATGGTAGTTTGATTCCCAGG 57.370 43.478 0.00 0.00 0.00 4.45
3369 3570 5.285401 TCTATGGTAGTTTGATTCCCAGGA 58.715 41.667 0.00 0.00 0.00 3.86
3370 3571 5.911178 TCTATGGTAGTTTGATTCCCAGGAT 59.089 40.000 0.00 0.00 0.00 3.24
3371 3572 4.946160 TGGTAGTTTGATTCCCAGGATT 57.054 40.909 0.00 0.00 0.00 3.01
3372 3573 4.599041 TGGTAGTTTGATTCCCAGGATTG 58.401 43.478 0.00 0.00 0.00 2.67
3373 3574 3.954258 GGTAGTTTGATTCCCAGGATTGG 59.046 47.826 0.00 0.00 44.60 3.16
3396 3597 3.773418 TCCTACGGGATTTGTTCACAA 57.227 42.857 0.00 0.00 36.57 3.33
3397 3598 3.670625 TCCTACGGGATTTGTTCACAAG 58.329 45.455 0.00 0.00 36.57 3.16
3398 3599 2.747446 CCTACGGGATTTGTTCACAAGG 59.253 50.000 0.00 0.00 34.08 3.61
3399 3600 2.649531 ACGGGATTTGTTCACAAGGA 57.350 45.000 0.00 0.00 37.15 3.36
3400 3601 2.938838 ACGGGATTTGTTCACAAGGAA 58.061 42.857 0.00 0.00 37.15 3.36
3401 3602 7.048808 CCTACGGGATTTGTTCACAAGGAAC 62.049 48.000 0.43 0.43 44.75 3.62
3413 3614 6.773976 TTCACAAGGAACATCAGTTTTTCT 57.226 33.333 0.00 0.00 38.30 2.52
3414 3615 6.135290 TCACAAGGAACATCAGTTTTTCTG 57.865 37.500 0.00 0.00 44.85 3.02
3415 3616 5.652014 TCACAAGGAACATCAGTTTTTCTGT 59.348 36.000 0.00 0.00 43.97 3.41
3416 3617 5.745294 CACAAGGAACATCAGTTTTTCTGTG 59.255 40.000 0.00 0.00 43.97 3.66
3417 3618 5.652014 ACAAGGAACATCAGTTTTTCTGTGA 59.348 36.000 0.00 0.00 43.97 3.58
3418 3619 5.757850 AGGAACATCAGTTTTTCTGTGAC 57.242 39.130 0.00 0.00 43.97 3.67
3419 3620 5.192927 AGGAACATCAGTTTTTCTGTGACA 58.807 37.500 0.00 0.00 43.97 3.58
3420 3621 5.066505 AGGAACATCAGTTTTTCTGTGACAC 59.933 40.000 0.00 0.00 43.97 3.67
3421 3622 5.163663 GGAACATCAGTTTTTCTGTGACACA 60.164 40.000 8.26 8.26 43.97 3.72
3422 3623 5.895636 ACATCAGTTTTTCTGTGACACAA 57.104 34.783 10.02 0.00 43.97 3.33
3423 3624 6.455360 ACATCAGTTTTTCTGTGACACAAT 57.545 33.333 10.02 0.00 43.97 2.71
3424 3625 6.498304 ACATCAGTTTTTCTGTGACACAATC 58.502 36.000 10.02 0.00 43.97 2.67
3425 3626 6.095300 ACATCAGTTTTTCTGTGACACAATCA 59.905 34.615 10.02 0.00 43.97 2.57
3426 3627 6.507958 TCAGTTTTTCTGTGACACAATCAA 57.492 33.333 10.02 0.19 43.97 2.57
3427 3628 6.918626 TCAGTTTTTCTGTGACACAATCAAA 58.081 32.000 10.02 6.36 43.97 2.69
3428 3629 6.806249 TCAGTTTTTCTGTGACACAATCAAAC 59.194 34.615 19.28 19.28 43.97 2.93
3429 3630 6.585702 CAGTTTTTCTGTGACACAATCAAACA 59.414 34.615 24.25 11.26 39.72 2.83
3430 3631 7.116090 CAGTTTTTCTGTGACACAATCAAACAA 59.884 33.333 24.25 10.57 39.72 2.83
3431 3632 7.655328 AGTTTTTCTGTGACACAATCAAACAAA 59.345 29.630 24.25 11.05 39.72 2.83
3432 3633 6.942886 TTTCTGTGACACAATCAAACAAAC 57.057 33.333 10.02 0.00 39.72 2.93
3433 3634 5.895636 TCTGTGACACAATCAAACAAACT 57.104 34.783 10.02 0.00 39.72 2.66
3434 3635 6.266168 TCTGTGACACAATCAAACAAACTT 57.734 33.333 10.02 0.00 39.72 2.66
3435 3636 6.092092 TCTGTGACACAATCAAACAAACTTG 58.908 36.000 10.02 0.00 39.72 3.16
3436 3637 6.018589 TGTGACACAATCAAACAAACTTGA 57.981 33.333 5.62 0.00 39.72 3.02
3437 3638 6.450545 TGTGACACAATCAAACAAACTTGAA 58.549 32.000 5.62 0.00 39.72 2.69
3438 3639 6.364706 TGTGACACAATCAAACAAACTTGAAC 59.635 34.615 5.62 0.00 39.72 3.18
3439 3640 6.364706 GTGACACAATCAAACAAACTTGAACA 59.635 34.615 0.00 0.00 39.72 3.18
3440 3641 7.063308 GTGACACAATCAAACAAACTTGAACAT 59.937 33.333 0.00 0.00 39.72 2.71
3441 3642 8.246871 TGACACAATCAAACAAACTTGAACATA 58.753 29.630 0.00 0.00 38.75 2.29
3442 3643 9.248291 GACACAATCAAACAAACTTGAACATAT 57.752 29.630 0.00 0.00 38.75 1.78
3443 3644 9.598517 ACACAATCAAACAAACTTGAACATATT 57.401 25.926 0.00 0.00 38.75 1.28
3476 3677 8.400947 TGAATCATTTGTAGAAAATCTAGCAGC 58.599 33.333 0.00 0.00 28.01 5.25
3477 3678 6.683974 TCATTTGTAGAAAATCTAGCAGCC 57.316 37.500 0.00 0.00 28.01 4.85
3478 3679 6.179756 TCATTTGTAGAAAATCTAGCAGCCA 58.820 36.000 0.00 0.00 28.01 4.75
3479 3680 5.880054 TTTGTAGAAAATCTAGCAGCCAC 57.120 39.130 0.00 0.00 28.01 5.01
3480 3681 4.826274 TGTAGAAAATCTAGCAGCCACT 57.174 40.909 0.00 0.00 28.01 4.00
3481 3682 5.165961 TGTAGAAAATCTAGCAGCCACTT 57.834 39.130 0.00 0.00 28.01 3.16
3482 3683 5.178797 TGTAGAAAATCTAGCAGCCACTTC 58.821 41.667 0.00 0.00 28.01 3.01
3483 3684 4.292186 AGAAAATCTAGCAGCCACTTCA 57.708 40.909 0.00 0.00 0.00 3.02
3484 3685 4.655963 AGAAAATCTAGCAGCCACTTCAA 58.344 39.130 0.00 0.00 0.00 2.69
3485 3686 4.457257 AGAAAATCTAGCAGCCACTTCAAC 59.543 41.667 0.00 0.00 0.00 3.18
3486 3687 2.409948 ATCTAGCAGCCACTTCAACC 57.590 50.000 0.00 0.00 0.00 3.77
3487 3688 1.352083 TCTAGCAGCCACTTCAACCT 58.648 50.000 0.00 0.00 0.00 3.50
3488 3689 1.699634 TCTAGCAGCCACTTCAACCTT 59.300 47.619 0.00 0.00 0.00 3.50
3489 3690 1.808945 CTAGCAGCCACTTCAACCTTG 59.191 52.381 0.00 0.00 0.00 3.61
3490 3691 0.183492 AGCAGCCACTTCAACCTTGA 59.817 50.000 0.00 0.00 34.92 3.02
3491 3692 1.032014 GCAGCCACTTCAACCTTGAA 58.968 50.000 0.68 0.68 44.31 2.69
3492 3693 1.408702 GCAGCCACTTCAACCTTGAAA 59.591 47.619 2.25 0.00 45.61 2.69
3493 3694 2.544486 GCAGCCACTTCAACCTTGAAAG 60.544 50.000 2.25 0.00 45.61 2.62
3494 3695 2.951642 CAGCCACTTCAACCTTGAAAGA 59.048 45.455 2.25 0.00 45.61 2.52
3495 3696 3.381272 CAGCCACTTCAACCTTGAAAGAA 59.619 43.478 2.25 0.00 45.61 2.52
3496 3697 4.023291 AGCCACTTCAACCTTGAAAGAAA 58.977 39.130 2.25 0.00 45.61 2.52
3497 3698 4.466015 AGCCACTTCAACCTTGAAAGAAAA 59.534 37.500 2.25 0.00 45.61 2.29
3498 3699 5.129320 AGCCACTTCAACCTTGAAAGAAAAT 59.871 36.000 2.25 0.00 45.61 1.82
3499 3700 5.463392 GCCACTTCAACCTTGAAAGAAAATC 59.537 40.000 2.25 0.00 45.61 2.17
3500 3701 6.572519 CCACTTCAACCTTGAAAGAAAATCA 58.427 36.000 2.25 0.00 45.61 2.57
3501 3702 7.212274 CCACTTCAACCTTGAAAGAAAATCAT 58.788 34.615 2.25 0.00 45.61 2.45
3502 3703 8.359642 CCACTTCAACCTTGAAAGAAAATCATA 58.640 33.333 2.25 0.00 45.61 2.15
3503 3704 9.918630 CACTTCAACCTTGAAAGAAAATCATAT 57.081 29.630 2.25 0.00 45.61 1.78
3504 3705 9.918630 ACTTCAACCTTGAAAGAAAATCATATG 57.081 29.630 0.00 0.00 45.61 1.78
3505 3706 9.918630 CTTCAACCTTGAAAGAAAATCATATGT 57.081 29.630 1.90 0.00 45.61 2.29
3539 3740 6.473397 TTTTTGTGACACCATCAAACAAAC 57.527 33.333 2.45 0.00 39.72 2.93
3540 3741 5.398603 TTTGTGACACCATCAAACAAACT 57.601 34.783 2.45 0.00 39.72 2.66
3541 3742 4.630894 TGTGACACCATCAAACAAACTC 57.369 40.909 2.45 0.00 39.72 3.01
3542 3743 4.013050 TGTGACACCATCAAACAAACTCA 58.987 39.130 2.45 0.00 39.72 3.41
3543 3744 4.460731 TGTGACACCATCAAACAAACTCAA 59.539 37.500 2.45 0.00 39.72 3.02
3544 3745 5.047731 TGTGACACCATCAAACAAACTCAAA 60.048 36.000 2.45 0.00 39.72 2.69
3545 3746 6.042143 GTGACACCATCAAACAAACTCAAAT 58.958 36.000 0.00 0.00 39.72 2.32
3546 3747 6.198966 GTGACACCATCAAACAAACTCAAATC 59.801 38.462 0.00 0.00 39.72 2.17
3547 3748 6.096705 TGACACCATCAAACAAACTCAAATCT 59.903 34.615 0.00 0.00 33.02 2.40
3548 3749 6.507023 ACACCATCAAACAAACTCAAATCTC 58.493 36.000 0.00 0.00 0.00 2.75
3549 3750 5.922544 CACCATCAAACAAACTCAAATCTCC 59.077 40.000 0.00 0.00 0.00 3.71
3550 3751 5.598005 ACCATCAAACAAACTCAAATCTCCA 59.402 36.000 0.00 0.00 0.00 3.86
3551 3752 6.268387 ACCATCAAACAAACTCAAATCTCCAT 59.732 34.615 0.00 0.00 0.00 3.41
3552 3753 7.156673 CCATCAAACAAACTCAAATCTCCATT 58.843 34.615 0.00 0.00 0.00 3.16
3553 3754 7.330208 CCATCAAACAAACTCAAATCTCCATTC 59.670 37.037 0.00 0.00 0.00 2.67
3554 3755 6.748132 TCAAACAAACTCAAATCTCCATTCC 58.252 36.000 0.00 0.00 0.00 3.01
3555 3756 6.550854 TCAAACAAACTCAAATCTCCATTCCT 59.449 34.615 0.00 0.00 0.00 3.36
3556 3757 6.983906 AACAAACTCAAATCTCCATTCCTT 57.016 33.333 0.00 0.00 0.00 3.36
3557 3758 6.983906 ACAAACTCAAATCTCCATTCCTTT 57.016 33.333 0.00 0.00 0.00 3.11
3558 3759 6.986250 ACAAACTCAAATCTCCATTCCTTTC 58.014 36.000 0.00 0.00 0.00 2.62
3559 3760 6.015095 ACAAACTCAAATCTCCATTCCTTTCC 60.015 38.462 0.00 0.00 0.00 3.13
3560 3761 5.527026 ACTCAAATCTCCATTCCTTTCCT 57.473 39.130 0.00 0.00 0.00 3.36
3561 3762 6.642733 ACTCAAATCTCCATTCCTTTCCTA 57.357 37.500 0.00 0.00 0.00 2.94
3562 3763 6.657875 ACTCAAATCTCCATTCCTTTCCTAG 58.342 40.000 0.00 0.00 0.00 3.02
3563 3764 6.216456 ACTCAAATCTCCATTCCTTTCCTAGT 59.784 38.462 0.00 0.00 0.00 2.57
3564 3765 6.418101 TCAAATCTCCATTCCTTTCCTAGTG 58.582 40.000 0.00 0.00 0.00 2.74
3565 3766 6.012508 TCAAATCTCCATTCCTTTCCTAGTGT 60.013 38.462 0.00 0.00 0.00 3.55
3566 3767 7.182026 TCAAATCTCCATTCCTTTCCTAGTGTA 59.818 37.037 0.00 0.00 0.00 2.90
3567 3768 7.698163 AATCTCCATTCCTTTCCTAGTGTAT 57.302 36.000 0.00 0.00 0.00 2.29
3568 3769 7.698163 ATCTCCATTCCTTTCCTAGTGTATT 57.302 36.000 0.00 0.00 0.00 1.89
3569 3770 7.510675 TCTCCATTCCTTTCCTAGTGTATTT 57.489 36.000 0.00 0.00 0.00 1.40
3570 3771 7.928873 TCTCCATTCCTTTCCTAGTGTATTTT 58.071 34.615 0.00 0.00 0.00 1.82
3571 3772 8.390921 TCTCCATTCCTTTCCTAGTGTATTTTT 58.609 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.261991 AGGAAGGAGGCACGGATCTA 59.738 55.000 0.00 0.00 0.00 1.98
58 59 3.493503 GGAGACAACGAGTTACCAAACAG 59.506 47.826 0.00 0.00 38.12 3.16
63 64 3.133362 ACAAAGGAGACAACGAGTTACCA 59.867 43.478 0.00 0.00 0.00 3.25
73 74 3.812156 TCTGACGAACAAAGGAGACAA 57.188 42.857 0.00 0.00 0.00 3.18
76 77 3.826729 TGAGATCTGACGAACAAAGGAGA 59.173 43.478 0.00 0.00 0.00 3.71
77 78 4.179926 TGAGATCTGACGAACAAAGGAG 57.820 45.455 0.00 0.00 0.00 3.69
80 81 4.687948 ACACATGAGATCTGACGAACAAAG 59.312 41.667 0.00 0.00 0.00 2.77
138 140 3.073678 CGATCCAGATGACAACAAACCA 58.926 45.455 0.00 0.00 0.00 3.67
139 141 2.159517 GCGATCCAGATGACAACAAACC 60.160 50.000 0.00 0.00 0.00 3.27
200 203 1.114722 ACCCCGACTTGGACGTACAA 61.115 55.000 13.69 13.69 42.00 2.41
242 245 8.579850 AATAAGACTGGATCTAATTGCACAAA 57.420 30.769 0.00 0.00 36.27 2.83
276 280 2.001812 CGTCAGGTCAACAGATCAGG 57.998 55.000 0.00 0.00 0.00 3.86
371 395 4.808364 GCATCTAAACAAACAAAGGCACAA 59.192 37.500 0.00 0.00 0.00 3.33
374 398 4.662468 TGCATCTAAACAAACAAAGGCA 57.338 36.364 0.00 0.00 0.00 4.75
457 486 7.094975 CCACGGTACAACATCAAAAGATCTTAA 60.095 37.037 8.75 0.00 0.00 1.85
459 488 5.181245 CCACGGTACAACATCAAAAGATCTT 59.819 40.000 0.88 0.88 0.00 2.40
478 507 3.670625 TCATGAGAACTAAAACCCACGG 58.329 45.455 0.00 0.00 0.00 4.94
479 508 4.755123 ACTTCATGAGAACTAAAACCCACG 59.245 41.667 0.00 0.00 0.00 4.94
492 521 8.675705 TCATTAACAGAAACAACTTCATGAGA 57.324 30.769 0.00 0.00 36.40 3.27
583 612 5.485353 TGGGATATTAAAACATGGTTGGCAA 59.515 36.000 0.00 0.00 0.00 4.52
588 617 9.045745 ACTCAAATGGGATATTAAAACATGGTT 57.954 29.630 0.00 0.00 0.00 3.67
589 618 8.608185 ACTCAAATGGGATATTAAAACATGGT 57.392 30.769 0.00 0.00 0.00 3.55
659 692 8.730680 CCTACTAGCAACAAAACTAATGAACAT 58.269 33.333 0.00 0.00 0.00 2.71
664 697 7.865706 ATCCCTACTAGCAACAAAACTAATG 57.134 36.000 0.00 0.00 0.00 1.90
669 702 6.018180 CCGATAATCCCTACTAGCAACAAAAC 60.018 42.308 0.00 0.00 0.00 2.43
672 705 4.652421 ACCGATAATCCCTACTAGCAACAA 59.348 41.667 0.00 0.00 0.00 2.83
693 726 8.119845 GTCACAAACACATTTTGGAAATTTACC 58.880 33.333 0.00 0.00 33.92 2.85
703 736 6.696583 TGAATAGCAGTCACAAACACATTTTG 59.303 34.615 0.00 0.00 35.64 2.44
710 743 6.463360 TCTGTATGAATAGCAGTCACAAACA 58.537 36.000 0.00 0.00 0.00 2.83
712 745 9.317936 CTAATCTGTATGAATAGCAGTCACAAA 57.682 33.333 0.00 0.00 0.00 2.83
713 746 7.928167 CCTAATCTGTATGAATAGCAGTCACAA 59.072 37.037 0.00 0.00 29.10 3.33
714 747 7.436933 CCTAATCTGTATGAATAGCAGTCACA 58.563 38.462 0.00 0.00 29.10 3.58
715 748 6.870965 CCCTAATCTGTATGAATAGCAGTCAC 59.129 42.308 0.00 0.00 29.10 3.67
716 749 6.519043 GCCCTAATCTGTATGAATAGCAGTCA 60.519 42.308 0.00 0.00 29.10 3.41
717 750 5.872070 GCCCTAATCTGTATGAATAGCAGTC 59.128 44.000 0.00 0.00 29.10 3.51
718 751 5.545723 AGCCCTAATCTGTATGAATAGCAGT 59.454 40.000 0.00 0.00 29.10 4.40
719 752 6.047511 AGCCCTAATCTGTATGAATAGCAG 57.952 41.667 0.00 0.00 29.10 4.24
720 753 7.386851 GTTAGCCCTAATCTGTATGAATAGCA 58.613 38.462 0.00 0.00 29.10 3.49
721 754 6.819146 GGTTAGCCCTAATCTGTATGAATAGC 59.181 42.308 0.00 0.00 29.10 2.97
722 755 7.907389 TGGTTAGCCCTAATCTGTATGAATAG 58.093 38.462 0.00 0.00 0.00 1.73
723 756 7.865530 TGGTTAGCCCTAATCTGTATGAATA 57.134 36.000 0.00 0.00 0.00 1.75
724 757 6.763715 TGGTTAGCCCTAATCTGTATGAAT 57.236 37.500 0.00 0.00 0.00 2.57
728 774 6.069615 ACAACTTGGTTAGCCCTAATCTGTAT 60.070 38.462 0.00 0.00 0.00 2.29
767 813 7.542824 GTGATCTCTACAACTTGGTTAGAGAAC 59.457 40.741 17.05 15.47 44.13 3.01
768 814 7.451877 AGTGATCTCTACAACTTGGTTAGAGAA 59.548 37.037 17.05 5.54 44.13 2.87
769 815 6.948886 AGTGATCTCTACAACTTGGTTAGAGA 59.051 38.462 16.08 16.08 44.76 3.10
770 816 7.164230 AGTGATCTCTACAACTTGGTTAGAG 57.836 40.000 8.97 8.97 36.51 2.43
771 817 7.540474 AAGTGATCTCTACAACTTGGTTAGA 57.460 36.000 0.00 0.00 0.00 2.10
772 818 7.118390 CCAAAGTGATCTCTACAACTTGGTTAG 59.882 40.741 13.50 0.00 31.91 2.34
773 819 6.934645 CCAAAGTGATCTCTACAACTTGGTTA 59.065 38.462 13.50 0.00 31.91 2.85
774 820 5.765182 CCAAAGTGATCTCTACAACTTGGTT 59.235 40.000 13.50 0.00 31.91 3.67
775 821 5.163195 ACCAAAGTGATCTCTACAACTTGGT 60.163 40.000 18.58 18.58 38.49 3.67
776 822 5.308825 ACCAAAGTGATCTCTACAACTTGG 58.691 41.667 17.64 17.64 37.32 3.61
777 823 6.708054 AGAACCAAAGTGATCTCTACAACTTG 59.292 38.462 0.00 0.00 0.00 3.16
778 824 6.831976 AGAACCAAAGTGATCTCTACAACTT 58.168 36.000 0.00 0.00 0.00 2.66
779 825 6.426646 AGAACCAAAGTGATCTCTACAACT 57.573 37.500 0.00 0.00 0.00 3.16
780 826 7.497925 AAAGAACCAAAGTGATCTCTACAAC 57.502 36.000 0.00 0.00 0.00 3.32
781 827 9.436957 GATAAAGAACCAAAGTGATCTCTACAA 57.563 33.333 0.00 0.00 0.00 2.41
782 828 8.593679 TGATAAAGAACCAAAGTGATCTCTACA 58.406 33.333 0.00 0.00 0.00 2.74
783 829 9.606631 ATGATAAAGAACCAAAGTGATCTCTAC 57.393 33.333 0.00 0.00 0.00 2.59
784 830 9.605275 CATGATAAAGAACCAAAGTGATCTCTA 57.395 33.333 0.00 0.00 0.00 2.43
785 831 8.105829 ACATGATAAAGAACCAAAGTGATCTCT 58.894 33.333 0.00 0.00 0.00 3.10
786 832 8.273780 ACATGATAAAGAACCAAAGTGATCTC 57.726 34.615 0.00 0.00 0.00 2.75
787 833 8.641498 AACATGATAAAGAACCAAAGTGATCT 57.359 30.769 0.00 0.00 0.00 2.75
788 834 9.346725 GAAACATGATAAAGAACCAAAGTGATC 57.653 33.333 0.00 0.00 0.00 2.92
789 835 9.082313 AGAAACATGATAAAGAACCAAAGTGAT 57.918 29.630 0.00 0.00 0.00 3.06
790 836 8.463930 AGAAACATGATAAAGAACCAAAGTGA 57.536 30.769 0.00 0.00 0.00 3.41
795 841 9.308000 ACCATAAGAAACATGATAAAGAACCAA 57.692 29.630 0.00 0.00 0.00 3.67
819 865 9.667989 AACGAACATTTACACTAAATTGTAACC 57.332 29.630 0.00 0.00 40.80 2.85
887 971 8.306761 AGGAAATAACAAGCAAATCAGGTAAAG 58.693 33.333 0.00 0.00 0.00 1.85
900 984 4.399303 ACATACAGCCAGGAAATAACAAGC 59.601 41.667 0.00 0.00 0.00 4.01
903 987 6.717289 ACTAACATACAGCCAGGAAATAACA 58.283 36.000 0.00 0.00 0.00 2.41
904 988 7.625828 AACTAACATACAGCCAGGAAATAAC 57.374 36.000 0.00 0.00 0.00 1.89
967 1055 5.578727 TGCAACAACAATCAAACCAAAGTAC 59.421 36.000 0.00 0.00 0.00 2.73
1141 1229 3.306989 CCAAGGTTCTGAGTCATGTAGCA 60.307 47.826 0.00 0.00 0.00 3.49
1176 1264 6.694877 AACAATGGAGAAGATGACATCATG 57.305 37.500 17.57 5.82 36.57 3.07
1212 1300 3.711704 TCTTGACACCTTTCTTCTCAGGT 59.288 43.478 0.00 0.00 44.88 4.00
1269 1357 0.236711 CAGTCTTGGAAACTGCAGCG 59.763 55.000 15.27 0.00 37.88 5.18
1395 1483 1.019673 CTTCATCCTTGATGGTGCGG 58.980 55.000 4.38 0.00 40.15 5.69
1552 1652 6.823182 TCATGTGAAGTTCAAAGACTGAGAAA 59.177 34.615 7.25 0.00 34.81 2.52
1582 1682 4.685169 ACAGACAGATTGTAAAATGCCG 57.315 40.909 0.00 0.00 0.00 5.69
1614 1714 7.770201 TCAAAAACAAGACAAACAGATGATGA 58.230 30.769 0.00 0.00 0.00 2.92
1615 1715 7.990541 TCAAAAACAAGACAAACAGATGATG 57.009 32.000 0.00 0.00 0.00 3.07
1632 1768 5.523552 AGCTGTAAAACTGGCATTCAAAAAC 59.476 36.000 0.00 0.00 0.00 2.43
1634 1770 5.049167 CAGCTGTAAAACTGGCATTCAAAA 58.951 37.500 5.25 0.00 0.00 2.44
1638 1774 4.418392 CATCAGCTGTAAAACTGGCATTC 58.582 43.478 14.67 0.00 34.57 2.67
1639 1775 3.367703 GCATCAGCTGTAAAACTGGCATT 60.368 43.478 14.67 0.00 37.91 3.56
1640 1776 2.165030 GCATCAGCTGTAAAACTGGCAT 59.835 45.455 14.67 0.00 37.91 4.40
1641 1777 1.541147 GCATCAGCTGTAAAACTGGCA 59.459 47.619 14.67 0.00 37.91 4.92
1642 1778 1.541147 TGCATCAGCTGTAAAACTGGC 59.459 47.619 14.67 7.52 42.74 4.85
1643 1779 4.445452 AATGCATCAGCTGTAAAACTGG 57.555 40.909 14.67 0.00 42.74 4.00
1644 1780 6.529125 CCTAAAATGCATCAGCTGTAAAACTG 59.471 38.462 14.67 4.47 42.74 3.16
1722 1864 6.382869 AACTAGCATCAGCCATATGAAAAC 57.617 37.500 3.65 0.00 43.56 2.43
1732 1874 3.243201 GGTGCATAAAACTAGCATCAGCC 60.243 47.826 0.00 0.00 43.56 4.85
1751 1893 9.643693 AACAATAGCAAAAGAATAATTCTGGTG 57.356 29.630 0.00 0.00 40.59 4.17
1806 1951 6.207614 AGTTCAAAGCCTAGGAAAAAGACATC 59.792 38.462 14.75 0.00 0.00 3.06
1929 2074 3.596066 GAGCGAGGAAGCACCAGCA 62.596 63.158 16.98 0.00 45.49 4.41
1947 2092 2.094649 GTCCAGGGAGTACACGAAGAAG 60.095 54.545 0.00 0.00 0.00 2.85
1965 2110 2.043227 AGCCTTGTCCTAGCATAGTCC 58.957 52.381 0.00 0.00 36.82 3.85
2109 2254 4.454161 CGGTAGACAATGATTCCAACACAA 59.546 41.667 0.00 0.00 0.00 3.33
2169 2314 0.389166 GAGTGCCAGTGAGGAGAACG 60.389 60.000 0.00 0.00 41.22 3.95
2229 2374 6.321717 TGTCACACAAACAGAGAAATTTGAC 58.678 36.000 0.00 0.00 38.82 3.18
2270 2416 2.559668 CTGCAAACAGGTGAATGGTGAT 59.440 45.455 0.00 0.00 40.48 3.06
2342 2488 0.251916 TGGGGTAAGATGCAAGACCG 59.748 55.000 0.00 0.00 32.38 4.79
2468 2614 0.397941 CACCAGCACCCTTGAAGAGA 59.602 55.000 0.00 0.00 0.00 3.10
2641 2787 5.104259 AGATAAAAGTTCGCCAGATCCTT 57.896 39.130 0.00 0.00 0.00 3.36
2932 3078 4.987912 GGCAAAGCAACAGCATAAACTAAA 59.012 37.500 0.00 0.00 0.00 1.85
2935 3081 2.629617 AGGCAAAGCAACAGCATAAACT 59.370 40.909 0.00 0.00 0.00 2.66
2936 3082 2.733026 CAGGCAAAGCAACAGCATAAAC 59.267 45.455 0.00 0.00 0.00 2.01
2937 3083 2.364970 ACAGGCAAAGCAACAGCATAAA 59.635 40.909 0.00 0.00 0.00 1.40
2940 3086 0.754472 AACAGGCAAAGCAACAGCAT 59.246 45.000 0.00 0.00 0.00 3.79
2941 3087 0.102844 GAACAGGCAAAGCAACAGCA 59.897 50.000 0.00 0.00 0.00 4.41
2942 3088 0.102844 TGAACAGGCAAAGCAACAGC 59.897 50.000 0.00 0.00 0.00 4.40
2960 3111 9.976511 ATCACAGGCAAATCAATAAGAATTATG 57.023 29.630 0.00 0.00 41.21 1.90
2963 3114 8.755977 AGAATCACAGGCAAATCAATAAGAATT 58.244 29.630 0.00 0.00 0.00 2.17
2964 3115 8.302515 AGAATCACAGGCAAATCAATAAGAAT 57.697 30.769 0.00 0.00 0.00 2.40
2965 3116 7.707624 AGAATCACAGGCAAATCAATAAGAA 57.292 32.000 0.00 0.00 0.00 2.52
2966 3117 7.177216 ACAAGAATCACAGGCAAATCAATAAGA 59.823 33.333 0.00 0.00 0.00 2.10
2967 3118 7.318141 ACAAGAATCACAGGCAAATCAATAAG 58.682 34.615 0.00 0.00 0.00 1.73
2968 3119 7.230849 ACAAGAATCACAGGCAAATCAATAA 57.769 32.000 0.00 0.00 0.00 1.40
2969 3120 6.839124 ACAAGAATCACAGGCAAATCAATA 57.161 33.333 0.00 0.00 0.00 1.90
2970 3121 5.733620 ACAAGAATCACAGGCAAATCAAT 57.266 34.783 0.00 0.00 0.00 2.57
2971 3122 5.534207 AACAAGAATCACAGGCAAATCAA 57.466 34.783 0.00 0.00 0.00 2.57
2972 3123 5.534207 AAACAAGAATCACAGGCAAATCA 57.466 34.783 0.00 0.00 0.00 2.57
2973 3124 7.147976 AGTAAAACAAGAATCACAGGCAAATC 58.852 34.615 0.00 0.00 0.00 2.17
2974 3125 7.054491 AGTAAAACAAGAATCACAGGCAAAT 57.946 32.000 0.00 0.00 0.00 2.32
2975 3126 6.463995 AGTAAAACAAGAATCACAGGCAAA 57.536 33.333 0.00 0.00 0.00 3.68
2976 3127 6.272318 CAAGTAAAACAAGAATCACAGGCAA 58.728 36.000 0.00 0.00 0.00 4.52
2977 3128 5.735922 GCAAGTAAAACAAGAATCACAGGCA 60.736 40.000 0.00 0.00 0.00 4.75
2978 3129 4.681483 GCAAGTAAAACAAGAATCACAGGC 59.319 41.667 0.00 0.00 0.00 4.85
2982 3133 7.702348 AGACAAAGCAAGTAAAACAAGAATCAC 59.298 33.333 0.00 0.00 0.00 3.06
2994 3145 6.203530 CAGAATCTCACAGACAAAGCAAGTAA 59.796 38.462 0.00 0.00 0.00 2.24
2999 3150 4.341366 TCAGAATCTCACAGACAAAGCA 57.659 40.909 0.00 0.00 0.00 3.91
3001 3152 5.636965 ACGAATCAGAATCTCACAGACAAAG 59.363 40.000 0.00 0.00 0.00 2.77
3007 3158 6.096036 ACTAACACGAATCAGAATCTCACAG 58.904 40.000 0.00 0.00 0.00 3.66
3008 3159 6.025749 ACTAACACGAATCAGAATCTCACA 57.974 37.500 0.00 0.00 0.00 3.58
3026 3177 3.586892 GGAACTGAGGCAGTGTACTAAC 58.413 50.000 0.22 0.00 44.62 2.34
3028 3179 1.816835 CGGAACTGAGGCAGTGTACTA 59.183 52.381 0.22 0.00 44.62 1.82
3029 3180 0.603569 CGGAACTGAGGCAGTGTACT 59.396 55.000 0.22 0.00 44.62 2.73
3030 3181 0.601558 TCGGAACTGAGGCAGTGTAC 59.398 55.000 0.22 0.00 44.62 2.90
3033 3184 1.466167 CATTTCGGAACTGAGGCAGTG 59.534 52.381 2.17 0.00 44.62 3.66
3037 3189 2.973945 ACTACATTTCGGAACTGAGGC 58.026 47.619 14.11 0.00 0.00 4.70
3046 3198 2.787680 GCTACGCACTACTACATTTCGG 59.212 50.000 0.00 0.00 0.00 4.30
3047 3199 2.787680 GGCTACGCACTACTACATTTCG 59.212 50.000 0.00 0.00 0.00 3.46
3058 3210 1.156736 GTGATGTTTGGCTACGCACT 58.843 50.000 0.00 0.00 0.00 4.40
3059 3211 0.871722 TGTGATGTTTGGCTACGCAC 59.128 50.000 0.00 0.00 0.00 5.34
3060 3212 1.598882 TTGTGATGTTTGGCTACGCA 58.401 45.000 0.00 0.00 0.00 5.24
3061 3213 2.031157 AGTTTGTGATGTTTGGCTACGC 60.031 45.455 0.00 0.00 0.00 4.42
3062 3214 3.896648 AGTTTGTGATGTTTGGCTACG 57.103 42.857 0.00 0.00 0.00 3.51
3063 3215 5.587289 TCAAAGTTTGTGATGTTTGGCTAC 58.413 37.500 15.08 0.00 31.97 3.58
3064 3216 5.843673 TCAAAGTTTGTGATGTTTGGCTA 57.156 34.783 15.08 0.00 31.97 3.93
3067 3219 7.536895 TTTGATCAAAGTTTGTGATGTTTGG 57.463 32.000 16.91 0.00 35.84 3.28
3073 3225 6.564499 GCGCAAATTTGATCAAAGTTTGTGAT 60.564 34.615 36.09 19.67 38.97 3.06
3076 3228 4.569966 TGCGCAAATTTGATCAAAGTTTGT 59.430 33.333 30.50 16.19 36.60 2.83
3096 3248 7.848539 TGTTAATGATACGATGTAAATGTTGCG 59.151 33.333 0.00 0.00 0.00 4.85
3207 3365 8.424133 AGAGAGAAAACCAACAAAAGCATATTT 58.576 29.630 0.00 0.00 0.00 1.40
3209 3367 7.530426 AGAGAGAAAACCAACAAAAGCATAT 57.470 32.000 0.00 0.00 0.00 1.78
3220 3421 5.368989 GAGAACAGGAAGAGAGAAAACCAA 58.631 41.667 0.00 0.00 0.00 3.67
3241 3442 8.348507 GCAAGAGATATTCAAATGTAAAGGGAG 58.651 37.037 0.00 0.00 0.00 4.30
3242 3443 7.012327 CGCAAGAGATATTCAAATGTAAAGGGA 59.988 37.037 0.00 0.00 43.02 4.20
3243 3444 7.012327 TCGCAAGAGATATTCAAATGTAAAGGG 59.988 37.037 0.00 0.00 45.01 3.95
3266 3467 1.593933 TGGTACACGTCTTGTTTTCGC 59.406 47.619 0.00 0.00 39.91 4.70
3288 3489 3.002791 TGGCGTAGAGAAGCAAAAGATG 58.997 45.455 0.00 0.00 34.54 2.90
3289 3490 3.334583 TGGCGTAGAGAAGCAAAAGAT 57.665 42.857 0.00 0.00 34.54 2.40
3290 3491 2.831685 TGGCGTAGAGAAGCAAAAGA 57.168 45.000 0.00 0.00 34.54 2.52
3303 3504 7.247728 GTCATTTTCAAATCACTTATGGCGTA 58.752 34.615 0.00 0.00 0.00 4.42
3305 3506 5.516339 GGTCATTTTCAAATCACTTATGGCG 59.484 40.000 0.00 0.00 0.00 5.69
3338 3539 9.788960 GGAATCAAACTACCATAGAATTCAAAC 57.211 33.333 8.44 0.00 0.00 2.93
3339 3540 8.966868 GGGAATCAAACTACCATAGAATTCAAA 58.033 33.333 8.44 0.00 0.00 2.69
3340 3541 8.112822 TGGGAATCAAACTACCATAGAATTCAA 58.887 33.333 8.44 0.00 0.00 2.69
3341 3542 7.638444 TGGGAATCAAACTACCATAGAATTCA 58.362 34.615 8.44 0.00 0.00 2.57
3342 3543 7.229506 CCTGGGAATCAAACTACCATAGAATTC 59.770 40.741 0.00 0.00 0.00 2.17
3343 3544 7.062957 CCTGGGAATCAAACTACCATAGAATT 58.937 38.462 0.00 0.00 0.00 2.17
3344 3545 6.389869 TCCTGGGAATCAAACTACCATAGAAT 59.610 38.462 0.00 0.00 0.00 2.40
3345 3546 5.729229 TCCTGGGAATCAAACTACCATAGAA 59.271 40.000 0.00 0.00 0.00 2.10
3346 3547 5.285401 TCCTGGGAATCAAACTACCATAGA 58.715 41.667 0.00 0.00 0.00 1.98
3347 3548 5.630415 TCCTGGGAATCAAACTACCATAG 57.370 43.478 0.00 0.00 0.00 2.23
3348 3549 6.364701 CAATCCTGGGAATCAAACTACCATA 58.635 40.000 0.00 0.00 0.00 2.74
3349 3550 5.203528 CAATCCTGGGAATCAAACTACCAT 58.796 41.667 0.00 0.00 0.00 3.55
3350 3551 4.569653 CCAATCCTGGGAATCAAACTACCA 60.570 45.833 0.00 0.00 39.30 3.25
3351 3552 3.954258 CCAATCCTGGGAATCAAACTACC 59.046 47.826 0.00 0.00 39.30 3.18
3352 3553 4.855340 TCCAATCCTGGGAATCAAACTAC 58.145 43.478 0.00 0.00 43.71 2.73
3353 3554 5.528600 TTCCAATCCTGGGAATCAAACTA 57.471 39.130 0.00 0.00 43.71 2.24
3354 3555 4.402616 TTCCAATCCTGGGAATCAAACT 57.597 40.909 0.00 0.00 43.71 2.66
3377 3578 2.747446 CCTTGTGAACAAATCCCGTAGG 59.253 50.000 0.00 0.00 41.20 3.18
3378 3579 3.670625 TCCTTGTGAACAAATCCCGTAG 58.329 45.455 0.00 0.00 35.15 3.51
3379 3580 3.773418 TCCTTGTGAACAAATCCCGTA 57.227 42.857 0.00 0.00 35.15 4.02
3380 3581 2.649531 TCCTTGTGAACAAATCCCGT 57.350 45.000 0.00 0.00 35.15 5.28
3390 3591 6.773976 AGAAAAACTGATGTTCCTTGTGAA 57.226 33.333 0.00 0.00 34.96 3.18
3405 3606 6.686630 TGTTTGATTGTGTCACAGAAAAACT 58.313 32.000 24.55 4.61 36.32 2.66
3406 3607 6.942886 TGTTTGATTGTGTCACAGAAAAAC 57.057 33.333 21.07 21.07 36.32 2.43
3407 3608 7.655328 AGTTTGTTTGATTGTGTCACAGAAAAA 59.345 29.630 5.67 5.52 33.32 1.94
3408 3609 7.151308 AGTTTGTTTGATTGTGTCACAGAAAA 58.849 30.769 5.67 5.85 33.32 2.29
3409 3610 6.686630 AGTTTGTTTGATTGTGTCACAGAAA 58.313 32.000 5.67 4.57 36.32 2.52
3410 3611 6.266168 AGTTTGTTTGATTGTGTCACAGAA 57.734 33.333 5.67 0.00 36.32 3.02
3411 3612 5.895636 AGTTTGTTTGATTGTGTCACAGA 57.104 34.783 5.67 0.00 36.32 3.41
3412 3613 6.092092 TCAAGTTTGTTTGATTGTGTCACAG 58.908 36.000 5.67 0.00 36.32 3.66
3413 3614 6.018589 TCAAGTTTGTTTGATTGTGTCACA 57.981 33.333 0.18 0.18 36.32 3.58
3414 3615 6.364706 TGTTCAAGTTTGTTTGATTGTGTCAC 59.635 34.615 0.00 0.00 36.97 3.67
3415 3616 6.450545 TGTTCAAGTTTGTTTGATTGTGTCA 58.549 32.000 0.00 0.00 36.97 3.58
3416 3617 6.942886 TGTTCAAGTTTGTTTGATTGTGTC 57.057 33.333 0.00 0.00 36.97 3.67
3417 3618 9.598517 AATATGTTCAAGTTTGTTTGATTGTGT 57.401 25.926 0.00 0.00 36.97 3.72
3450 3651 8.400947 GCTGCTAGATTTTCTACAAATGATTCA 58.599 33.333 0.00 0.00 0.00 2.57
3451 3652 7.859875 GGCTGCTAGATTTTCTACAAATGATTC 59.140 37.037 0.00 0.00 0.00 2.52
3452 3653 7.340232 TGGCTGCTAGATTTTCTACAAATGATT 59.660 33.333 0.00 0.00 0.00 2.57
3453 3654 6.830324 TGGCTGCTAGATTTTCTACAAATGAT 59.170 34.615 0.00 0.00 0.00 2.45
3454 3655 6.094048 GTGGCTGCTAGATTTTCTACAAATGA 59.906 38.462 0.00 0.00 0.00 2.57
3455 3656 6.094603 AGTGGCTGCTAGATTTTCTACAAATG 59.905 38.462 0.00 0.00 0.00 2.32
3456 3657 6.183347 AGTGGCTGCTAGATTTTCTACAAAT 58.817 36.000 0.00 0.00 0.00 2.32
3457 3658 5.560724 AGTGGCTGCTAGATTTTCTACAAA 58.439 37.500 0.00 0.00 0.00 2.83
3458 3659 5.165961 AGTGGCTGCTAGATTTTCTACAA 57.834 39.130 0.00 0.00 0.00 2.41
3459 3660 4.826274 AGTGGCTGCTAGATTTTCTACA 57.174 40.909 0.00 0.00 0.00 2.74
3460 3661 5.178797 TGAAGTGGCTGCTAGATTTTCTAC 58.821 41.667 0.00 0.00 0.00 2.59
3461 3662 5.420725 TGAAGTGGCTGCTAGATTTTCTA 57.579 39.130 0.00 0.00 0.00 2.10
3462 3663 4.292186 TGAAGTGGCTGCTAGATTTTCT 57.708 40.909 0.00 0.00 0.00 2.52
3463 3664 4.379918 GGTTGAAGTGGCTGCTAGATTTTC 60.380 45.833 0.00 0.00 0.00 2.29
3464 3665 3.507622 GGTTGAAGTGGCTGCTAGATTTT 59.492 43.478 0.00 0.00 0.00 1.82
3465 3666 3.084786 GGTTGAAGTGGCTGCTAGATTT 58.915 45.455 0.00 0.00 0.00 2.17
3466 3667 2.307098 AGGTTGAAGTGGCTGCTAGATT 59.693 45.455 0.00 0.00 0.00 2.40
3467 3668 1.912043 AGGTTGAAGTGGCTGCTAGAT 59.088 47.619 0.00 0.00 0.00 1.98
3468 3669 1.352083 AGGTTGAAGTGGCTGCTAGA 58.648 50.000 0.00 0.00 0.00 2.43
3469 3670 1.808945 CAAGGTTGAAGTGGCTGCTAG 59.191 52.381 0.00 0.00 0.00 3.42
3470 3671 1.419762 TCAAGGTTGAAGTGGCTGCTA 59.580 47.619 0.00 0.00 33.55 3.49
3471 3672 0.183492 TCAAGGTTGAAGTGGCTGCT 59.817 50.000 0.00 0.00 33.55 4.24
3472 3673 1.032014 TTCAAGGTTGAAGTGGCTGC 58.968 50.000 0.87 0.00 41.88 5.25
3473 3674 2.951642 TCTTTCAAGGTTGAAGTGGCTG 59.048 45.455 5.35 0.00 46.68 4.85
3474 3675 3.297134 TCTTTCAAGGTTGAAGTGGCT 57.703 42.857 5.35 0.00 46.68 4.75
3475 3676 4.385358 TTTCTTTCAAGGTTGAAGTGGC 57.615 40.909 5.35 0.00 46.68 5.01
3476 3677 6.572519 TGATTTTCTTTCAAGGTTGAAGTGG 58.427 36.000 5.35 1.85 46.68 4.00
3477 3678 9.918630 ATATGATTTTCTTTCAAGGTTGAAGTG 57.081 29.630 5.35 3.92 46.68 3.16
3478 3679 9.918630 CATATGATTTTCTTTCAAGGTTGAAGT 57.081 29.630 0.00 0.00 46.68 3.01
3479 3680 9.918630 ACATATGATTTTCTTTCAAGGTTGAAG 57.081 29.630 10.38 1.64 46.68 3.02
3516 3717 6.226787 AGTTTGTTTGATGGTGTCACAAAAA 58.773 32.000 5.12 0.00 35.71 1.94
3517 3718 5.788450 AGTTTGTTTGATGGTGTCACAAAA 58.212 33.333 5.12 0.00 35.71 2.44
3518 3719 5.047731 TGAGTTTGTTTGATGGTGTCACAAA 60.048 36.000 5.12 0.00 36.32 2.83
3519 3720 4.460731 TGAGTTTGTTTGATGGTGTCACAA 59.539 37.500 5.12 0.00 36.32 3.33
3520 3721 4.013050 TGAGTTTGTTTGATGGTGTCACA 58.987 39.130 5.12 0.00 36.32 3.58
3521 3722 4.630894 TGAGTTTGTTTGATGGTGTCAC 57.369 40.909 0.00 0.00 36.32 3.67
3522 3723 5.651387 TTTGAGTTTGTTTGATGGTGTCA 57.349 34.783 0.00 0.00 34.25 3.58
3523 3724 6.507023 AGATTTGAGTTTGTTTGATGGTGTC 58.493 36.000 0.00 0.00 0.00 3.67
3524 3725 6.461509 GGAGATTTGAGTTTGTTTGATGGTGT 60.462 38.462 0.00 0.00 0.00 4.16
3525 3726 5.922544 GGAGATTTGAGTTTGTTTGATGGTG 59.077 40.000 0.00 0.00 0.00 4.17
3526 3727 5.598005 TGGAGATTTGAGTTTGTTTGATGGT 59.402 36.000 0.00 0.00 0.00 3.55
3527 3728 6.088016 TGGAGATTTGAGTTTGTTTGATGG 57.912 37.500 0.00 0.00 0.00 3.51
3528 3729 7.330208 GGAATGGAGATTTGAGTTTGTTTGATG 59.670 37.037 0.00 0.00 0.00 3.07
3529 3730 7.234166 AGGAATGGAGATTTGAGTTTGTTTGAT 59.766 33.333 0.00 0.00 0.00 2.57
3530 3731 6.550854 AGGAATGGAGATTTGAGTTTGTTTGA 59.449 34.615 0.00 0.00 0.00 2.69
3531 3732 6.752168 AGGAATGGAGATTTGAGTTTGTTTG 58.248 36.000 0.00 0.00 0.00 2.93
3532 3733 6.983906 AGGAATGGAGATTTGAGTTTGTTT 57.016 33.333 0.00 0.00 0.00 2.83
3533 3734 6.983906 AAGGAATGGAGATTTGAGTTTGTT 57.016 33.333 0.00 0.00 0.00 2.83
3534 3735 6.015095 GGAAAGGAATGGAGATTTGAGTTTGT 60.015 38.462 0.00 0.00 0.00 2.83
3535 3736 6.210185 AGGAAAGGAATGGAGATTTGAGTTTG 59.790 38.462 0.00 0.00 0.00 2.93
3536 3737 6.318112 AGGAAAGGAATGGAGATTTGAGTTT 58.682 36.000 0.00 0.00 0.00 2.66
3537 3738 5.896963 AGGAAAGGAATGGAGATTTGAGTT 58.103 37.500 0.00 0.00 0.00 3.01
3538 3739 5.527026 AGGAAAGGAATGGAGATTTGAGT 57.473 39.130 0.00 0.00 0.00 3.41
3539 3740 6.541641 CACTAGGAAAGGAATGGAGATTTGAG 59.458 42.308 0.00 0.00 0.00 3.02
3540 3741 6.012508 ACACTAGGAAAGGAATGGAGATTTGA 60.013 38.462 0.00 0.00 0.00 2.69
3541 3742 6.183347 ACACTAGGAAAGGAATGGAGATTTG 58.817 40.000 0.00 0.00 0.00 2.32
3542 3743 6.394345 ACACTAGGAAAGGAATGGAGATTT 57.606 37.500 0.00 0.00 0.00 2.17
3543 3744 7.698163 ATACACTAGGAAAGGAATGGAGATT 57.302 36.000 0.00 0.00 0.00 2.40
3544 3745 7.698163 AATACACTAGGAAAGGAATGGAGAT 57.302 36.000 0.00 0.00 0.00 2.75
3545 3746 7.510675 AAATACACTAGGAAAGGAATGGAGA 57.489 36.000 0.00 0.00 0.00 3.71
3546 3747 8.581253 AAAAATACACTAGGAAAGGAATGGAG 57.419 34.615 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.