Multiple sequence alignment - TraesCS6A01G281100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G281100 chr6A 100.000 5121 0 0 1 5121 510869069 510863949 0.000000e+00 9457.0
1 TraesCS6A01G281100 chr6B 94.555 2314 98 14 2782 5087 555294603 555292310 0.000000e+00 3550.0
2 TraesCS6A01G281100 chr6B 88.347 1742 90 40 184 1910 555297185 555295542 0.000000e+00 1988.0
3 TraesCS6A01G281100 chr6B 86.375 411 23 16 2416 2823 555294984 555294604 7.930000e-113 418.0
4 TraesCS6A01G281100 chr6B 93.793 145 8 1 1 144 218021449 218021593 3.100000e-52 217.0
5 TraesCS6A01G281100 chr6B 91.509 106 6 1 3430 3535 432264045 432264147 5.340000e-30 143.0
6 TraesCS6A01G281100 chr6B 93.976 83 5 0 1 83 522036115 522036197 5.380000e-25 126.0
7 TraesCS6A01G281100 chr6B 74.716 352 44 19 1930 2255 555295553 555295221 1.170000e-21 115.0
8 TraesCS6A01G281100 chr6D 91.179 2698 111 52 181 2843 369665167 369662562 0.000000e+00 3546.0
9 TraesCS6A01G281100 chr6D 94.809 2254 86 13 2847 5090 369662393 369660161 0.000000e+00 3485.0
10 TraesCS6A01G281100 chr2A 97.931 145 2 1 1 144 596379153 596379297 3.060000e-62 250.0
11 TraesCS6A01G281100 chr5A 96.552 145 4 1 1 144 79270018 79269874 6.630000e-59 239.0
12 TraesCS6A01G281100 chr5A 80.672 238 38 7 3305 3535 370097210 370096974 1.470000e-40 178.0
13 TraesCS6A01G281100 chr5A 79.412 238 41 7 3305 3535 370042568 370042804 1.480000e-35 161.0
14 TraesCS6A01G281100 chr4B 90.345 145 13 1 1 144 635327452 635327596 6.770000e-44 189.0
15 TraesCS6A01G281100 chr2D 88.966 145 14 2 1 144 639657795 639657938 1.470000e-40 178.0
16 TraesCS6A01G281100 chr5D 89.209 139 15 0 1 139 364030775 364030637 1.900000e-39 174.0
17 TraesCS6A01G281100 chr5D 80.252 238 39 7 3305 3535 278467571 278467807 6.820000e-39 172.0
18 TraesCS6A01G281100 chr5B 79.661 236 40 7 3305 3533 316623388 316623622 4.100000e-36 163.0
19 TraesCS6A01G281100 chr5B 96.875 32 1 0 164 195 283027529 283027498 3.000000e-03 54.7
20 TraesCS6A01G281100 chr3B 100.000 29 0 0 164 192 821082652 821082624 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G281100 chr6A 510863949 510869069 5120 True 9457.00 9457 100.00000 1 5121 1 chr6A.!!$R1 5120
1 TraesCS6A01G281100 chr6B 555292310 555297185 4875 True 1517.75 3550 85.99825 184 5087 4 chr6B.!!$R1 4903
2 TraesCS6A01G281100 chr6D 369660161 369665167 5006 True 3515.50 3546 92.99400 181 5090 2 chr6D.!!$R1 4909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.033504 GACTGTTGCTCCTTGGACGA 59.966 55.000 0.00 0.00 0.00 4.20 F
82 83 0.034059 ACTGTTGCTCCTTGGACGAG 59.966 55.000 0.00 0.00 0.00 4.18 F
1737 1777 0.106669 AGAAAAAGGATAGGGCGCCC 60.107 55.000 39.29 39.29 0.00 6.13 F
1815 1856 0.109132 GGCTTTGAATTGACAGGCGG 60.109 55.000 0.00 0.00 0.00 6.13 F
2616 2776 0.248825 CCGCTGTTCCTCTGAGATCG 60.249 60.000 6.17 0.53 0.00 3.69 F
3219 3589 1.271597 CCTCCTCACCAAGGTTCCTTG 60.272 57.143 20.84 20.84 46.32 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 1597 0.392706 CGGATCGGATGATGGTGGAA 59.607 55.0 0.00 0.00 34.09 3.53 R
1795 1835 0.454957 CGCCTGTCAATTCAAAGCCG 60.455 55.0 0.00 0.00 0.00 5.52 R
2597 2757 0.248825 CGATCTCAGAGGAACAGCGG 60.249 60.0 0.00 0.00 0.00 5.52 R
3616 3987 0.687098 CCTGCACCCCATTGCCATTA 60.687 55.0 0.00 0.00 42.25 1.90 R
3658 4029 0.802607 GGTCGCTGTCGTCTTCCATC 60.803 60.0 0.00 0.00 36.96 3.51 R
5094 5475 0.664761 AGTGAAGCATGTGCACACAC 59.335 50.0 24.37 23.53 45.05 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.776616 CCTCTGAACTGGGATCAGC 57.223 57.895 0.00 0.00 44.59 4.26
19 20 1.202330 CCTCTGAACTGGGATCAGCT 58.798 55.000 0.00 0.00 44.59 4.24
20 21 1.138661 CCTCTGAACTGGGATCAGCTC 59.861 57.143 0.00 0.00 44.59 4.09
21 22 2.109774 CTCTGAACTGGGATCAGCTCT 58.890 52.381 0.00 0.00 44.59 4.09
22 23 3.295093 CTCTGAACTGGGATCAGCTCTA 58.705 50.000 0.00 0.00 44.59 2.43
23 24 3.295093 TCTGAACTGGGATCAGCTCTAG 58.705 50.000 0.00 0.00 44.59 2.43
24 25 1.759445 TGAACTGGGATCAGCTCTAGC 59.241 52.381 0.00 0.00 44.59 3.42
36 37 0.640768 GCTCTAGCGTTTGTAGCACG 59.359 55.000 0.00 0.00 40.75 5.34
37 38 1.731424 GCTCTAGCGTTTGTAGCACGA 60.731 52.381 0.00 0.00 40.20 4.35
38 39 2.177977 CTCTAGCGTTTGTAGCACGAG 58.822 52.381 0.00 0.00 40.20 4.18
39 40 0.640768 CTAGCGTTTGTAGCACGAGC 59.359 55.000 0.00 0.00 40.20 5.03
40 41 0.038983 TAGCGTTTGTAGCACGAGCA 60.039 50.000 7.77 0.00 45.49 4.26
41 42 0.670546 AGCGTTTGTAGCACGAGCAT 60.671 50.000 7.77 0.00 45.49 3.79
42 43 0.247301 GCGTTTGTAGCACGAGCATC 60.247 55.000 7.77 0.00 45.49 3.91
43 44 1.350193 CGTTTGTAGCACGAGCATCT 58.650 50.000 7.77 0.00 45.49 2.90
44 45 1.726791 CGTTTGTAGCACGAGCATCTT 59.273 47.619 7.77 0.00 45.49 2.40
45 46 2.157668 CGTTTGTAGCACGAGCATCTTT 59.842 45.455 7.77 0.00 45.49 2.52
46 47 3.366724 CGTTTGTAGCACGAGCATCTTTA 59.633 43.478 7.77 0.00 45.49 1.85
47 48 4.490959 CGTTTGTAGCACGAGCATCTTTAG 60.491 45.833 7.77 0.00 45.49 1.85
48 49 3.868757 TGTAGCACGAGCATCTTTAGT 57.131 42.857 7.77 0.00 45.49 2.24
49 50 3.511699 TGTAGCACGAGCATCTTTAGTG 58.488 45.455 7.77 0.00 45.49 2.74
59 60 4.021191 GCATCTTTAGTGCTACTTTGGC 57.979 45.455 0.00 0.00 39.45 4.52
60 61 3.691609 GCATCTTTAGTGCTACTTTGGCT 59.308 43.478 0.00 0.00 39.45 4.75
61 62 4.876107 GCATCTTTAGTGCTACTTTGGCTA 59.124 41.667 0.00 0.00 39.45 3.93
62 63 5.007136 GCATCTTTAGTGCTACTTTGGCTAG 59.993 44.000 0.00 0.00 39.45 3.42
63 64 5.995565 TCTTTAGTGCTACTTTGGCTAGA 57.004 39.130 0.00 0.00 0.00 2.43
64 65 5.721232 TCTTTAGTGCTACTTTGGCTAGAC 58.279 41.667 0.00 0.00 0.00 2.59
65 66 5.480772 TCTTTAGTGCTACTTTGGCTAGACT 59.519 40.000 0.00 0.00 0.00 3.24
66 67 3.601443 AGTGCTACTTTGGCTAGACTG 57.399 47.619 0.00 0.00 0.00 3.51
67 68 2.900546 AGTGCTACTTTGGCTAGACTGT 59.099 45.455 0.00 0.00 0.00 3.55
68 69 3.325135 AGTGCTACTTTGGCTAGACTGTT 59.675 43.478 0.00 0.00 0.00 3.16
69 70 3.433615 GTGCTACTTTGGCTAGACTGTTG 59.566 47.826 0.00 0.00 0.00 3.33
70 71 2.416893 GCTACTTTGGCTAGACTGTTGC 59.583 50.000 0.00 2.57 0.00 4.17
71 72 2.938956 ACTTTGGCTAGACTGTTGCT 57.061 45.000 0.00 0.00 0.00 3.91
72 73 2.772287 ACTTTGGCTAGACTGTTGCTC 58.228 47.619 0.00 0.00 0.00 4.26
73 74 2.079925 CTTTGGCTAGACTGTTGCTCC 58.920 52.381 0.00 0.00 0.00 4.70
74 75 1.352083 TTGGCTAGACTGTTGCTCCT 58.648 50.000 0.00 0.00 0.00 3.69
75 76 1.352083 TGGCTAGACTGTTGCTCCTT 58.648 50.000 0.00 0.00 0.00 3.36
76 77 1.002430 TGGCTAGACTGTTGCTCCTTG 59.998 52.381 0.00 0.00 0.00 3.61
77 78 1.677217 GGCTAGACTGTTGCTCCTTGG 60.677 57.143 0.00 0.00 0.00 3.61
78 79 1.276421 GCTAGACTGTTGCTCCTTGGA 59.724 52.381 0.00 0.00 0.00 3.53
79 80 2.933056 GCTAGACTGTTGCTCCTTGGAC 60.933 54.545 0.00 0.00 0.00 4.02
80 81 0.034059 AGACTGTTGCTCCTTGGACG 59.966 55.000 0.00 0.00 0.00 4.79
81 82 0.033504 GACTGTTGCTCCTTGGACGA 59.966 55.000 0.00 0.00 0.00 4.20
82 83 0.034059 ACTGTTGCTCCTTGGACGAG 59.966 55.000 0.00 0.00 0.00 4.18
90 91 3.742433 CTCCTTGGACGAGCTATCATT 57.258 47.619 0.00 0.00 0.00 2.57
91 92 4.855715 CTCCTTGGACGAGCTATCATTA 57.144 45.455 0.00 0.00 0.00 1.90
92 93 4.804108 CTCCTTGGACGAGCTATCATTAG 58.196 47.826 0.00 0.00 0.00 1.73
93 94 4.470602 TCCTTGGACGAGCTATCATTAGA 58.529 43.478 0.00 0.00 0.00 2.10
94 95 4.278669 TCCTTGGACGAGCTATCATTAGAC 59.721 45.833 0.00 0.00 0.00 2.59
95 96 4.038042 CCTTGGACGAGCTATCATTAGACA 59.962 45.833 0.00 0.00 0.00 3.41
96 97 4.569761 TGGACGAGCTATCATTAGACAC 57.430 45.455 0.00 0.00 0.00 3.67
97 98 3.951680 TGGACGAGCTATCATTAGACACA 59.048 43.478 0.00 0.00 0.00 3.72
98 99 4.202020 TGGACGAGCTATCATTAGACACAC 60.202 45.833 0.00 0.00 0.00 3.82
99 100 4.291783 GACGAGCTATCATTAGACACACC 58.708 47.826 0.00 0.00 0.00 4.16
100 101 3.954904 ACGAGCTATCATTAGACACACCT 59.045 43.478 0.00 0.00 0.00 4.00
101 102 4.402793 ACGAGCTATCATTAGACACACCTT 59.597 41.667 0.00 0.00 0.00 3.50
102 103 5.105310 ACGAGCTATCATTAGACACACCTTT 60.105 40.000 0.00 0.00 0.00 3.11
103 104 5.812642 CGAGCTATCATTAGACACACCTTTT 59.187 40.000 0.00 0.00 0.00 2.27
104 105 6.313905 CGAGCTATCATTAGACACACCTTTTT 59.686 38.462 0.00 0.00 0.00 1.94
120 121 1.523758 TTTTTCTTCTCCTCTGGCGC 58.476 50.000 0.00 0.00 0.00 6.53
121 122 0.687354 TTTTCTTCTCCTCTGGCGCT 59.313 50.000 7.64 0.00 0.00 5.92
122 123 0.247736 TTTCTTCTCCTCTGGCGCTC 59.752 55.000 7.64 0.00 0.00 5.03
123 124 0.613292 TTCTTCTCCTCTGGCGCTCT 60.613 55.000 7.64 0.00 0.00 4.09
124 125 1.034838 TCTTCTCCTCTGGCGCTCTC 61.035 60.000 7.64 0.00 0.00 3.20
125 126 1.304464 TTCTCCTCTGGCGCTCTCA 60.304 57.895 7.64 0.00 0.00 3.27
126 127 1.318886 TTCTCCTCTGGCGCTCTCAG 61.319 60.000 7.64 6.58 0.00 3.35
127 128 2.757508 TCCTCTGGCGCTCTCAGG 60.758 66.667 7.64 8.13 33.36 3.86
128 129 4.527583 CCTCTGGCGCTCTCAGGC 62.528 72.222 7.64 0.00 33.36 4.85
129 130 3.459965 CTCTGGCGCTCTCAGGCT 61.460 66.667 7.64 0.00 33.36 4.58
130 131 2.999648 TCTGGCGCTCTCAGGCTT 61.000 61.111 7.64 0.00 33.36 4.35
131 132 2.818714 CTGGCGCTCTCAGGCTTG 60.819 66.667 7.64 0.00 35.01 4.01
132 133 3.602513 CTGGCGCTCTCAGGCTTGT 62.603 63.158 7.64 0.00 35.01 3.16
133 134 2.359230 GGCGCTCTCAGGCTTGTT 60.359 61.111 7.64 0.00 0.00 2.83
134 135 1.968540 GGCGCTCTCAGGCTTGTTT 60.969 57.895 7.64 0.00 0.00 2.83
135 136 1.518903 GGCGCTCTCAGGCTTGTTTT 61.519 55.000 7.64 0.00 0.00 2.43
136 137 1.156736 GCGCTCTCAGGCTTGTTTTA 58.843 50.000 0.00 0.00 0.00 1.52
137 138 1.535462 GCGCTCTCAGGCTTGTTTTAA 59.465 47.619 0.00 0.00 0.00 1.52
138 139 2.031157 GCGCTCTCAGGCTTGTTTTAAA 60.031 45.455 0.00 0.00 0.00 1.52
139 140 3.550030 GCGCTCTCAGGCTTGTTTTAAAA 60.550 43.478 0.00 0.00 0.00 1.52
140 141 4.222114 CGCTCTCAGGCTTGTTTTAAAAG 58.778 43.478 0.00 0.00 0.00 2.27
141 142 4.261197 CGCTCTCAGGCTTGTTTTAAAAGT 60.261 41.667 0.00 0.00 0.00 2.66
142 143 5.049680 CGCTCTCAGGCTTGTTTTAAAAGTA 60.050 40.000 0.00 0.00 0.00 2.24
143 144 6.374578 GCTCTCAGGCTTGTTTTAAAAGTAG 58.625 40.000 0.00 3.15 0.00 2.57
144 145 6.017026 GCTCTCAGGCTTGTTTTAAAAGTAGT 60.017 38.462 0.00 0.00 0.00 2.73
145 146 7.259290 TCTCAGGCTTGTTTTAAAAGTAGTG 57.741 36.000 0.00 0.00 0.00 2.74
146 147 6.826741 TCTCAGGCTTGTTTTAAAAGTAGTGT 59.173 34.615 0.00 0.00 0.00 3.55
147 148 7.338449 TCTCAGGCTTGTTTTAAAAGTAGTGTT 59.662 33.333 0.00 0.00 0.00 3.32
148 149 7.477494 TCAGGCTTGTTTTAAAAGTAGTGTTC 58.523 34.615 0.00 0.00 0.00 3.18
149 150 7.338449 TCAGGCTTGTTTTAAAAGTAGTGTTCT 59.662 33.333 0.00 0.00 0.00 3.01
150 151 8.617809 CAGGCTTGTTTTAAAAGTAGTGTTCTA 58.382 33.333 0.00 0.00 0.00 2.10
151 152 9.181061 AGGCTTGTTTTAAAAGTAGTGTTCTAA 57.819 29.630 0.00 0.00 0.00 2.10
152 153 9.961265 GGCTTGTTTTAAAAGTAGTGTTCTAAT 57.039 29.630 0.00 0.00 0.00 1.73
488 507 3.419759 CCACGCACGCCTAACCAC 61.420 66.667 0.00 0.00 0.00 4.16
548 567 3.183793 ACAGTTTAAAAGACGGACGGT 57.816 42.857 0.00 0.00 0.00 4.83
660 684 2.022129 CCCGACGACAGCAACAGTC 61.022 63.158 0.00 0.00 0.00 3.51
694 718 1.082756 CGCGCCTCCATTAATTCGC 60.083 57.895 0.00 0.00 39.26 4.70
697 721 1.515521 CGCCTCCATTAATTCGCCCC 61.516 60.000 0.00 0.00 0.00 5.80
698 722 0.178990 GCCTCCATTAATTCGCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
700 724 1.545651 CCTCCATTAATTCGCCCCTCC 60.546 57.143 0.00 0.00 0.00 4.30
701 725 1.142870 CTCCATTAATTCGCCCCTCCA 59.857 52.381 0.00 0.00 0.00 3.86
702 726 1.566703 TCCATTAATTCGCCCCTCCAA 59.433 47.619 0.00 0.00 0.00 3.53
704 728 2.100749 CCATTAATTCGCCCCTCCAAAC 59.899 50.000 0.00 0.00 0.00 2.93
705 729 1.842052 TTAATTCGCCCCTCCAAACC 58.158 50.000 0.00 0.00 0.00 3.27
706 730 0.393267 TAATTCGCCCCTCCAAACCG 60.393 55.000 0.00 0.00 0.00 4.44
711 735 4.426313 CCCCTCCAAACCGCTCCC 62.426 72.222 0.00 0.00 0.00 4.30
712 736 4.778143 CCCTCCAAACCGCTCCCG 62.778 72.222 0.00 0.00 0.00 5.14
713 737 4.016706 CCTCCAAACCGCTCCCGT 62.017 66.667 0.00 0.00 0.00 5.28
714 738 2.434359 CTCCAAACCGCTCCCGTC 60.434 66.667 0.00 0.00 0.00 4.79
715 739 2.920912 TCCAAACCGCTCCCGTCT 60.921 61.111 0.00 0.00 0.00 4.18
724 748 2.357517 CTCCCGTCTGCGTTTGCT 60.358 61.111 0.00 0.00 43.34 3.91
739 763 4.379603 GCGTTTGCTTCTGTACTCTCTCTA 60.380 45.833 0.00 0.00 38.39 2.43
798 824 2.373224 CAAGAATCTTCTTCCTGGGCC 58.627 52.381 0.00 0.00 45.23 5.80
801 827 1.566298 AATCTTCTTCCTGGGCCGCT 61.566 55.000 0.00 0.00 0.00 5.52
885 914 2.650778 CGCAAGTCAAAAGGGGCC 59.349 61.111 0.00 0.00 0.00 5.80
937 967 1.288752 CGGCCGGTTCATTTTTGCT 59.711 52.632 20.10 0.00 0.00 3.91
938 968 0.732538 CGGCCGGTTCATTTTTGCTC 60.733 55.000 20.10 0.00 0.00 4.26
973 1003 0.537828 GCGAGGGAGTAGGAGTAGGG 60.538 65.000 0.00 0.00 0.00 3.53
1149 1179 2.801631 GGAGCTCCTCATCGGGGTG 61.802 68.421 26.25 0.00 34.84 4.61
1534 1574 1.374252 CGAGGTAAACAGCAGCCGT 60.374 57.895 0.00 0.00 0.00 5.68
1557 1597 4.922026 ACCGCCGCGTTTCCAGTT 62.922 61.111 12.58 0.00 0.00 3.16
1670 1710 5.344396 GCGTTAGTTAGCGAAGAAAAGTACT 59.656 40.000 0.00 0.00 31.27 2.73
1671 1711 6.452220 GCGTTAGTTAGCGAAGAAAAGTACTC 60.452 42.308 0.00 0.00 31.27 2.59
1672 1712 6.236889 CGTTAGTTAGCGAAGAAAAGTACTCG 60.237 42.308 0.00 0.00 31.27 4.18
1673 1713 5.118642 AGTTAGCGAAGAAAAGTACTCGT 57.881 39.130 0.00 0.00 0.00 4.18
1674 1714 6.246420 AGTTAGCGAAGAAAAGTACTCGTA 57.754 37.500 0.00 0.00 0.00 3.43
1681 1721 6.503132 CGAAGAAAAGTACTCGTAAAAGTCG 58.497 40.000 0.00 0.00 0.00 4.18
1737 1777 0.106669 AGAAAAAGGATAGGGCGCCC 60.107 55.000 39.29 39.29 0.00 6.13
1738 1778 1.444917 GAAAAAGGATAGGGCGCCCG 61.445 60.000 38.88 0.00 41.95 6.13
1739 1779 4.564110 AAAGGATAGGGCGCCCGC 62.564 66.667 38.88 29.89 41.95 6.13
1815 1856 0.109132 GGCTTTGAATTGACAGGCGG 60.109 55.000 0.00 0.00 0.00 6.13
1817 1858 0.454957 CTTTGAATTGACAGGCGGCG 60.455 55.000 0.51 0.51 0.00 6.46
1818 1859 0.886938 TTTGAATTGACAGGCGGCGA 60.887 50.000 12.98 0.00 0.00 5.54
1819 1860 1.573829 TTGAATTGACAGGCGGCGAC 61.574 55.000 12.98 8.50 0.00 5.19
1910 1951 3.695816 CGCTCGATCATTCACAAGACTA 58.304 45.455 0.00 0.00 0.00 2.59
1911 1952 4.294232 CGCTCGATCATTCACAAGACTAT 58.706 43.478 0.00 0.00 0.00 2.12
1912 1953 4.381270 CGCTCGATCATTCACAAGACTATC 59.619 45.833 0.00 0.00 0.00 2.08
1914 1955 5.629020 GCTCGATCATTCACAAGACTATCTC 59.371 44.000 0.00 0.00 0.00 2.75
1917 1958 7.421599 TCGATCATTCACAAGACTATCTCTTC 58.578 38.462 0.00 0.00 37.08 2.87
1918 1959 7.284261 TCGATCATTCACAAGACTATCTCTTCT 59.716 37.037 0.00 0.00 37.08 2.85
1919 1960 7.591057 CGATCATTCACAAGACTATCTCTTCTC 59.409 40.741 0.00 0.00 37.08 2.87
1946 1987 3.884037 AAGATCCACAAGACTGGGTTT 57.116 42.857 0.00 0.00 31.41 3.27
1983 2024 1.162698 CCGAGGCATATGCTTGGATG 58.837 55.000 26.12 10.85 41.70 3.51
1984 2025 1.271001 CCGAGGCATATGCTTGGATGA 60.271 52.381 26.12 0.00 41.70 2.92
1985 2026 2.497138 CGAGGCATATGCTTGGATGAA 58.503 47.619 26.12 0.00 41.70 2.57
1986 2027 3.079578 CGAGGCATATGCTTGGATGAAT 58.920 45.455 26.12 2.73 41.70 2.57
1987 2028 3.119955 CGAGGCATATGCTTGGATGAATG 60.120 47.826 26.12 2.64 41.70 2.67
1988 2029 3.162666 AGGCATATGCTTGGATGAATGG 58.837 45.455 26.12 0.00 41.70 3.16
1989 2030 3.159472 GGCATATGCTTGGATGAATGGA 58.841 45.455 26.12 0.00 41.70 3.41
1990 2031 3.767673 GGCATATGCTTGGATGAATGGAT 59.232 43.478 26.12 0.00 41.70 3.41
2006 2047 4.737855 ATGGATCAGTTGTAGCTACGTT 57.262 40.909 18.74 4.22 0.00 3.99
2026 2067 6.207213 ACGTTGTAAAAATAATTTGGCGTGA 58.793 32.000 0.00 0.00 0.00 4.35
2063 2104 2.697751 AGTTGGTTTTGGTTGCATGCTA 59.302 40.909 20.33 8.83 0.00 3.49
2227 2295 3.855858 TGCCTTTGTTGTCACTTTTTCC 58.144 40.909 0.00 0.00 0.00 3.13
2255 2323 2.656947 ACTTGGCCTGCTCAACTTAA 57.343 45.000 3.32 0.00 0.00 1.85
2261 2329 4.151883 TGGCCTGCTCAACTTAAAGAATT 58.848 39.130 3.32 0.00 0.00 2.17
2262 2330 4.022068 TGGCCTGCTCAACTTAAAGAATTG 60.022 41.667 3.32 0.00 0.00 2.32
2263 2331 4.021981 GGCCTGCTCAACTTAAAGAATTGT 60.022 41.667 0.00 0.00 0.00 2.71
2266 2334 6.515696 GCCTGCTCAACTTAAAGAATTGTCTT 60.516 38.462 0.00 0.00 46.47 3.01
2267 2335 7.308589 GCCTGCTCAACTTAAAGAATTGTCTTA 60.309 37.037 0.00 0.00 43.59 2.10
2268 2336 8.017946 CCTGCTCAACTTAAAGAATTGTCTTAC 58.982 37.037 0.00 0.00 43.59 2.34
2269 2337 8.445275 TGCTCAACTTAAAGAATTGTCTTACA 57.555 30.769 0.00 0.00 43.59 2.41
2271 2339 8.017946 GCTCAACTTAAAGAATTGTCTTACAGG 58.982 37.037 0.00 0.00 43.59 4.00
2272 2340 7.871853 TCAACTTAAAGAATTGTCTTACAGGC 58.128 34.615 0.00 0.00 43.59 4.85
2273 2341 7.719633 TCAACTTAAAGAATTGTCTTACAGGCT 59.280 33.333 0.00 0.00 43.59 4.58
2274 2342 8.999431 CAACTTAAAGAATTGTCTTACAGGCTA 58.001 33.333 0.00 0.00 43.59 3.93
2276 2344 8.154856 ACTTAAAGAATTGTCTTACAGGCTACA 58.845 33.333 0.00 0.00 43.59 2.74
2277 2345 9.167311 CTTAAAGAATTGTCTTACAGGCTACAT 57.833 33.333 0.00 0.00 43.59 2.29
2278 2346 7.617041 AAAGAATTGTCTTACAGGCTACATC 57.383 36.000 0.00 0.00 43.59 3.06
2279 2347 6.299805 AGAATTGTCTTACAGGCTACATCA 57.700 37.500 0.00 0.00 0.00 3.07
2280 2348 6.893583 AGAATTGTCTTACAGGCTACATCAT 58.106 36.000 0.00 0.00 0.00 2.45
2281 2349 6.765036 AGAATTGTCTTACAGGCTACATCATG 59.235 38.462 0.00 0.00 0.00 3.07
2301 2369 2.679336 TGCAGATGATGTGTACATGCAC 59.321 45.455 12.71 0.00 36.57 4.57
2319 2413 1.879380 CACTGCCATCGTCTCCAAAAA 59.121 47.619 0.00 0.00 0.00 1.94
2338 2432 4.843220 AAAATTTGACTGCACAGGAGAG 57.157 40.909 2.21 0.00 0.00 3.20
2344 2438 3.655810 CTGCACAGGAGAGACCGCC 62.656 68.421 0.00 0.00 44.74 6.13
2351 2445 2.160721 AGGAGAGACCGCCTGATTAA 57.839 50.000 0.00 0.00 41.26 1.40
2363 2457 3.309954 CGCCTGATTAAGCTAGTGGTTTC 59.690 47.826 0.00 0.00 35.36 2.78
2372 2466 9.262358 GATTAAGCTAGTGGTTTCGAGATTATT 57.738 33.333 0.00 0.00 35.36 1.40
2430 2589 1.396996 GTACACACCAATGCTTAGCCG 59.603 52.381 0.29 0.00 0.00 5.52
2445 2604 2.109425 AGCCGGATCTTACCAAACAC 57.891 50.000 5.05 0.00 0.00 3.32
2446 2605 1.349688 AGCCGGATCTTACCAAACACA 59.650 47.619 5.05 0.00 0.00 3.72
2465 2624 5.109903 ACACACGAATCATTTAGTCTAGCC 58.890 41.667 0.00 0.00 0.00 3.93
2480 2639 4.937431 GCCCTAGTCGCATGCCCC 62.937 72.222 13.15 2.22 0.00 5.80
2521 2680 1.497278 CGGTGCACGTTGAATGGAG 59.503 57.895 11.45 0.00 37.93 3.86
2529 2688 2.094894 CACGTTGAATGGAGTCTGCATC 59.905 50.000 7.37 2.60 0.00 3.91
2547 2707 8.231161 GTCTGCATCTGATTCAATCATTCATAG 58.769 37.037 0.00 0.00 38.85 2.23
2548 2708 7.937394 TCTGCATCTGATTCAATCATTCATAGT 59.063 33.333 0.00 0.00 38.85 2.12
2549 2709 8.459911 TGCATCTGATTCAATCATTCATAGTT 57.540 30.769 0.00 0.00 38.85 2.24
2550 2710 8.909923 TGCATCTGATTCAATCATTCATAGTTT 58.090 29.630 0.00 0.00 38.85 2.66
2551 2711 9.395707 GCATCTGATTCAATCATTCATAGTTTC 57.604 33.333 0.00 0.00 38.85 2.78
2566 2726 6.040247 TCATAGTTTCATACTACACGGCAAG 58.960 40.000 0.00 0.00 41.99 4.01
2568 2728 3.007614 AGTTTCATACTACACGGCAAGGT 59.992 43.478 0.00 0.00 34.56 3.50
2597 2757 6.694411 CCACTTGCTGATTTAGTATTGAATGC 59.306 38.462 0.00 0.00 0.00 3.56
2616 2776 0.248825 CCGCTGTTCCTCTGAGATCG 60.249 60.000 6.17 0.53 0.00 3.69
2763 2925 2.281484 TGCAGACGCCTTGGTTCC 60.281 61.111 0.00 0.00 37.32 3.62
2764 2926 2.281484 GCAGACGCCTTGGTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
2765 2927 2.328099 GCAGACGCCTTGGTTCCAG 61.328 63.158 0.00 0.00 0.00 3.86
2766 2928 2.032681 AGACGCCTTGGTTCCAGC 59.967 61.111 0.00 0.00 0.00 4.85
2767 2929 2.032681 GACGCCTTGGTTCCAGCT 59.967 61.111 2.52 0.00 0.00 4.24
2833 3035 8.236586 TGATCAAAATAAAGAACTGAATCACGG 58.763 33.333 0.00 0.00 0.00 4.94
2843 3045 5.779806 AACTGAATCACGGTTCGAAATAG 57.220 39.130 0.00 0.00 43.71 1.73
2844 3046 4.817517 ACTGAATCACGGTTCGAAATAGT 58.182 39.130 0.00 0.00 33.91 2.12
2854 3221 6.953743 CACGGTTCGAAATAGTGTTAGAAATG 59.046 38.462 16.17 0.00 0.00 2.32
2857 3224 7.461918 GGTTCGAAATAGTGTTAGAAATGTCC 58.538 38.462 0.00 0.00 0.00 4.02
2893 3263 2.839438 CGACGTTGATCGCTCGCTG 61.839 63.158 0.00 0.00 44.19 5.18
3219 3589 1.271597 CCTCCTCACCAAGGTTCCTTG 60.272 57.143 20.84 20.84 46.32 3.61
3229 3599 7.924541 TCACCAAGGTTCCTTGTACTATATTT 58.075 34.615 24.22 1.43 41.12 1.40
3230 3600 8.387813 TCACCAAGGTTCCTTGTACTATATTTT 58.612 33.333 24.22 0.23 41.12 1.82
3231 3601 9.020731 CACCAAGGTTCCTTGTACTATATTTTT 57.979 33.333 24.22 0.00 41.12 1.94
3286 3657 6.497785 TTTGGTGTTTTTCTGACGTTCTTA 57.502 33.333 0.00 0.00 0.00 2.10
3287 3658 6.687081 TTGGTGTTTTTCTGACGTTCTTAT 57.313 33.333 0.00 0.00 0.00 1.73
3290 3661 7.802738 TGGTGTTTTTCTGACGTTCTTATATG 58.197 34.615 0.00 0.00 0.00 1.78
3567 3938 4.223953 GGAGGAATGTCTGTCCCTGTATA 58.776 47.826 0.00 0.00 35.59 1.47
3568 3939 4.841246 GGAGGAATGTCTGTCCCTGTATAT 59.159 45.833 0.00 0.00 35.59 0.86
3596 3967 2.420722 AGTTCTAGCTCTAGTGCACGTC 59.579 50.000 18.36 0.01 34.84 4.34
3616 3987 2.300152 TCTGAACTGATTCGCTCTTGGT 59.700 45.455 0.00 0.00 37.69 3.67
3622 3993 2.288666 TGATTCGCTCTTGGTAATGGC 58.711 47.619 0.00 0.00 0.00 4.40
3658 4029 1.664873 TCCTCTACATCTCGTCGGTG 58.335 55.000 0.00 0.00 0.00 4.94
3671 4042 2.648593 TCGGTGATGGAAGACGACA 58.351 52.632 0.00 0.00 0.00 4.35
3832 4203 1.299926 GTGCTTCGACACCGTGTCT 60.300 57.895 25.37 0.00 44.85 3.41
3889 4260 2.124983 CCCATCCTGCTCCACGTG 60.125 66.667 9.08 9.08 0.00 4.49
4010 4381 1.228337 TCCTTCTCGTGGGTCGACA 60.228 57.895 18.91 0.00 44.01 4.35
4011 4382 0.824595 TCCTTCTCGTGGGTCGACAA 60.825 55.000 18.91 1.40 44.01 3.18
4012 4383 0.666577 CCTTCTCGTGGGTCGACAAC 60.667 60.000 18.91 13.76 44.01 3.32
4124 4495 2.654863 CCAACAACTGGGTCTGAAGTT 58.345 47.619 0.00 0.00 42.17 2.66
4138 4509 3.498397 TCTGAAGTTTGATGAAACGCCTC 59.502 43.478 1.98 2.17 45.34 4.70
4149 4520 2.138656 AAACGCCTCGACTACGTGCT 62.139 55.000 0.00 0.00 40.44 4.40
4257 4628 3.385111 CCCAGAGTGGAGTGGACTATAAC 59.615 52.174 0.00 0.00 40.96 1.89
4349 4720 3.244976 CAAAACGGATTGCAAGGATGAC 58.755 45.455 4.94 0.00 0.00 3.06
4359 4730 3.849911 TGCAAGGATGACTTTCGTAGAG 58.150 45.455 0.00 0.00 37.29 2.43
4697 5076 4.079253 GTGCAACCTTCCCTTTCAGATTA 58.921 43.478 0.00 0.00 0.00 1.75
4700 5079 5.779771 TGCAACCTTCCCTTTCAGATTAATT 59.220 36.000 0.00 0.00 0.00 1.40
4703 5082 5.583932 ACCTTCCCTTTCAGATTAATTGCT 58.416 37.500 0.00 0.00 0.00 3.91
4733 5112 2.727392 TTCCACATACTCCCCGGCG 61.727 63.158 0.00 0.00 0.00 6.46
4742 5121 2.203728 TCCCCGGCGCATATAGGT 60.204 61.111 10.83 0.00 0.00 3.08
4873 5252 2.133553 CAATAGATCGGCAGAGCACAG 58.866 52.381 4.63 0.00 34.73 3.66
4931 5312 3.757493 CGTGGGAACTGAGAGTACTTACT 59.243 47.826 0.00 0.00 39.71 2.24
4952 5333 4.042062 ACTGTTGATGAGATCCTCCACAAA 59.958 41.667 0.00 0.00 31.12 2.83
5042 5423 2.375174 TCCAGCTAAACATTCACCACCT 59.625 45.455 0.00 0.00 0.00 4.00
5073 5454 2.023673 CCAACTGCACAGAAAGGAACA 58.976 47.619 4.31 0.00 0.00 3.18
5086 5467 8.298854 CACAGAAAGGAACACATCAAATATTGA 58.701 33.333 0.00 0.00 45.01 2.57
5090 5471 7.765695 AAGGAACACATCAAATATTGACAGT 57.234 32.000 0.00 0.00 43.48 3.55
5091 5472 7.765695 AGGAACACATCAAATATTGACAGTT 57.234 32.000 0.00 1.52 43.48 3.16
5092 5473 8.181904 AGGAACACATCAAATATTGACAGTTT 57.818 30.769 0.00 0.00 43.48 2.66
5093 5474 9.295825 AGGAACACATCAAATATTGACAGTTTA 57.704 29.630 0.00 0.00 43.48 2.01
5094 5475 9.559958 GGAACACATCAAATATTGACAGTTTAG 57.440 33.333 0.00 0.00 43.48 1.85
5096 5477 9.897744 AACACATCAAATATTGACAGTTTAGTG 57.102 29.630 0.00 0.00 43.48 2.74
5097 5478 9.066892 ACACATCAAATATTGACAGTTTAGTGT 57.933 29.630 0.00 0.00 43.48 3.55
5098 5479 9.333497 CACATCAAATATTGACAGTTTAGTGTG 57.667 33.333 0.00 0.86 43.48 3.82
5099 5480 9.066892 ACATCAAATATTGACAGTTTAGTGTGT 57.933 29.630 0.00 0.00 43.48 3.72
5100 5481 9.333497 CATCAAATATTGACAGTTTAGTGTGTG 57.667 33.333 0.00 0.00 43.48 3.82
5101 5482 7.359595 TCAAATATTGACAGTTTAGTGTGTGC 58.640 34.615 0.00 0.00 34.08 4.57
5102 5483 6.875948 AATATTGACAGTTTAGTGTGTGCA 57.124 33.333 0.00 0.00 0.00 4.57
5103 5484 4.552166 ATTGACAGTTTAGTGTGTGCAC 57.448 40.909 10.75 10.75 45.57 4.57
5112 5493 3.168628 GTGTGTGCACATGCTTCAC 57.831 52.632 24.69 20.86 43.97 3.18
5113 5494 0.664761 GTGTGTGCACATGCTTCACT 59.335 50.000 24.69 0.00 43.97 3.41
5114 5495 1.872952 GTGTGTGCACATGCTTCACTA 59.127 47.619 24.69 12.92 43.97 2.74
5115 5496 1.872952 TGTGTGCACATGCTTCACTAC 59.127 47.619 24.69 6.31 42.25 2.73
5116 5497 1.197721 GTGTGCACATGCTTCACTACC 59.802 52.381 24.69 0.91 42.66 3.18
5117 5498 1.202746 TGTGCACATGCTTCACTACCA 60.203 47.619 17.42 0.00 42.66 3.25
5118 5499 1.197721 GTGCACATGCTTCACTACCAC 59.802 52.381 13.17 0.00 42.66 4.16
5119 5500 1.202746 TGCACATGCTTCACTACCACA 60.203 47.619 5.31 0.00 42.66 4.17
5120 5501 1.197721 GCACATGCTTCACTACCACAC 59.802 52.381 0.00 0.00 38.21 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.138661 GAGCTGATCCCAGTTCAGAGG 59.861 57.143 0.00 0.00 46.08 3.69
1 2 2.600470 GAGCTGATCCCAGTTCAGAG 57.400 55.000 0.00 0.00 46.08 3.35
5 6 1.269517 CGCTAGAGCTGATCCCAGTTC 60.270 57.143 0.00 0.00 46.84 3.01
6 7 0.749649 CGCTAGAGCTGATCCCAGTT 59.250 55.000 0.00 0.00 42.35 3.16
7 8 0.396417 ACGCTAGAGCTGATCCCAGT 60.396 55.000 0.00 0.00 42.35 4.00
9 10 1.134699 CAAACGCTAGAGCTGATCCCA 60.135 52.381 0.00 0.00 39.32 4.37
11 12 2.301577 ACAAACGCTAGAGCTGATCC 57.698 50.000 0.00 0.00 39.32 3.36
12 13 2.792116 GCTACAAACGCTAGAGCTGATC 59.208 50.000 0.00 0.00 39.32 2.92
13 14 2.166459 TGCTACAAACGCTAGAGCTGAT 59.834 45.455 0.00 0.00 39.32 2.90
14 15 1.544246 TGCTACAAACGCTAGAGCTGA 59.456 47.619 0.00 0.00 39.32 4.26
15 16 1.656095 GTGCTACAAACGCTAGAGCTG 59.344 52.381 0.00 0.00 39.32 4.24
16 17 1.732732 CGTGCTACAAACGCTAGAGCT 60.733 52.381 0.00 0.00 39.32 4.09
17 18 0.640768 CGTGCTACAAACGCTAGAGC 59.359 55.000 0.00 0.00 33.79 4.09
18 19 2.177977 CTCGTGCTACAAACGCTAGAG 58.822 52.381 0.00 0.00 40.80 2.43
19 20 1.731424 GCTCGTGCTACAAACGCTAGA 60.731 52.381 1.41 0.00 40.80 2.43
20 21 0.640768 GCTCGTGCTACAAACGCTAG 59.359 55.000 1.41 0.00 40.80 3.42
21 22 0.038983 TGCTCGTGCTACAAACGCTA 60.039 50.000 11.19 0.00 40.80 4.26
22 23 0.670546 ATGCTCGTGCTACAAACGCT 60.671 50.000 11.19 0.00 40.80 5.07
23 24 0.247301 GATGCTCGTGCTACAAACGC 60.247 55.000 11.19 0.00 40.80 4.84
24 25 1.350193 AGATGCTCGTGCTACAAACG 58.650 50.000 11.19 0.00 42.36 3.60
25 26 3.813529 AAAGATGCTCGTGCTACAAAC 57.186 42.857 11.19 0.00 40.48 2.93
26 27 4.388773 CACTAAAGATGCTCGTGCTACAAA 59.611 41.667 11.19 0.00 40.48 2.83
27 28 3.926527 CACTAAAGATGCTCGTGCTACAA 59.073 43.478 11.19 0.00 40.48 2.41
28 29 3.511699 CACTAAAGATGCTCGTGCTACA 58.488 45.455 11.19 0.00 40.48 2.74
29 30 2.282820 GCACTAAAGATGCTCGTGCTAC 59.717 50.000 11.19 4.87 45.39 3.58
30 31 2.540515 GCACTAAAGATGCTCGTGCTA 58.459 47.619 11.19 0.00 45.39 3.49
31 32 1.363744 GCACTAAAGATGCTCGTGCT 58.636 50.000 11.19 0.00 45.39 4.40
32 33 3.885777 GCACTAAAGATGCTCGTGC 57.114 52.632 1.71 1.71 43.22 5.34
38 39 3.691609 AGCCAAAGTAGCACTAAAGATGC 59.308 43.478 0.00 0.00 43.74 3.91
39 40 6.256757 GTCTAGCCAAAGTAGCACTAAAGATG 59.743 42.308 0.00 0.00 0.00 2.90
40 41 6.155393 AGTCTAGCCAAAGTAGCACTAAAGAT 59.845 38.462 0.00 0.00 0.00 2.40
41 42 5.480772 AGTCTAGCCAAAGTAGCACTAAAGA 59.519 40.000 0.00 0.00 0.00 2.52
42 43 5.578727 CAGTCTAGCCAAAGTAGCACTAAAG 59.421 44.000 0.00 0.00 0.00 1.85
43 44 5.011738 ACAGTCTAGCCAAAGTAGCACTAAA 59.988 40.000 0.00 0.00 0.00 1.85
44 45 4.527038 ACAGTCTAGCCAAAGTAGCACTAA 59.473 41.667 0.00 0.00 0.00 2.24
45 46 4.087182 ACAGTCTAGCCAAAGTAGCACTA 58.913 43.478 0.00 0.00 0.00 2.74
46 47 2.900546 ACAGTCTAGCCAAAGTAGCACT 59.099 45.455 0.00 0.00 0.00 4.40
47 48 3.320673 ACAGTCTAGCCAAAGTAGCAC 57.679 47.619 0.00 0.00 0.00 4.40
48 49 3.664107 CAACAGTCTAGCCAAAGTAGCA 58.336 45.455 0.00 0.00 0.00 3.49
49 50 2.416893 GCAACAGTCTAGCCAAAGTAGC 59.583 50.000 0.00 0.00 0.00 3.58
50 51 3.929610 GAGCAACAGTCTAGCCAAAGTAG 59.070 47.826 0.00 0.00 0.00 2.57
51 52 3.306780 GGAGCAACAGTCTAGCCAAAGTA 60.307 47.826 0.00 0.00 0.00 2.24
52 53 2.551071 GGAGCAACAGTCTAGCCAAAGT 60.551 50.000 0.00 0.00 0.00 2.66
53 54 2.079925 GGAGCAACAGTCTAGCCAAAG 58.920 52.381 0.00 0.00 0.00 2.77
54 55 1.699634 AGGAGCAACAGTCTAGCCAAA 59.300 47.619 0.00 0.00 0.00 3.28
55 56 1.352083 AGGAGCAACAGTCTAGCCAA 58.648 50.000 0.00 0.00 0.00 4.52
56 57 1.002430 CAAGGAGCAACAGTCTAGCCA 59.998 52.381 0.00 0.00 0.00 4.75
57 58 1.677217 CCAAGGAGCAACAGTCTAGCC 60.677 57.143 0.00 0.00 0.00 3.93
58 59 1.276421 TCCAAGGAGCAACAGTCTAGC 59.724 52.381 0.00 0.00 0.00 3.42
59 60 2.672478 CGTCCAAGGAGCAACAGTCTAG 60.672 54.545 0.00 0.00 0.00 2.43
60 61 1.272490 CGTCCAAGGAGCAACAGTCTA 59.728 52.381 0.00 0.00 0.00 2.59
61 62 0.034059 CGTCCAAGGAGCAACAGTCT 59.966 55.000 0.00 0.00 0.00 3.24
62 63 0.033504 TCGTCCAAGGAGCAACAGTC 59.966 55.000 0.00 0.00 0.00 3.51
63 64 0.034059 CTCGTCCAAGGAGCAACAGT 59.966 55.000 0.00 0.00 0.00 3.55
64 65 2.832931 CTCGTCCAAGGAGCAACAG 58.167 57.895 0.00 0.00 0.00 3.16
70 71 3.742433 AATGATAGCTCGTCCAAGGAG 57.258 47.619 0.00 0.00 33.54 3.69
71 72 4.278669 GTCTAATGATAGCTCGTCCAAGGA 59.721 45.833 0.00 0.00 0.00 3.36
72 73 4.038042 TGTCTAATGATAGCTCGTCCAAGG 59.962 45.833 0.00 0.00 0.00 3.61
73 74 4.979197 GTGTCTAATGATAGCTCGTCCAAG 59.021 45.833 0.00 0.00 0.00 3.61
74 75 4.401202 TGTGTCTAATGATAGCTCGTCCAA 59.599 41.667 0.00 0.00 0.00 3.53
75 76 3.951680 TGTGTCTAATGATAGCTCGTCCA 59.048 43.478 0.00 0.00 0.00 4.02
76 77 4.291783 GTGTGTCTAATGATAGCTCGTCC 58.708 47.826 0.00 0.00 0.00 4.79
77 78 4.036971 AGGTGTGTCTAATGATAGCTCGTC 59.963 45.833 0.00 0.00 0.00 4.20
78 79 3.954904 AGGTGTGTCTAATGATAGCTCGT 59.045 43.478 0.00 0.00 0.00 4.18
79 80 4.576216 AGGTGTGTCTAATGATAGCTCG 57.424 45.455 0.00 0.00 0.00 5.03
80 81 7.617041 AAAAAGGTGTGTCTAATGATAGCTC 57.383 36.000 0.00 0.00 0.00 4.09
101 102 1.072331 AGCGCCAGAGGAGAAGAAAAA 59.928 47.619 2.29 0.00 0.00 1.94
102 103 0.687354 AGCGCCAGAGGAGAAGAAAA 59.313 50.000 2.29 0.00 0.00 2.29
103 104 0.247736 GAGCGCCAGAGGAGAAGAAA 59.752 55.000 2.29 0.00 0.00 2.52
104 105 0.613292 AGAGCGCCAGAGGAGAAGAA 60.613 55.000 2.29 0.00 0.00 2.52
105 106 1.000270 AGAGCGCCAGAGGAGAAGA 60.000 57.895 2.29 0.00 0.00 2.87
106 107 1.318886 TGAGAGCGCCAGAGGAGAAG 61.319 60.000 2.29 0.00 0.00 2.85
107 108 1.304464 TGAGAGCGCCAGAGGAGAA 60.304 57.895 2.29 0.00 0.00 2.87
108 109 1.752310 CTGAGAGCGCCAGAGGAGA 60.752 63.158 2.29 0.00 33.65 3.71
109 110 2.784356 CCTGAGAGCGCCAGAGGAG 61.784 68.421 12.96 0.00 33.65 3.69
110 111 2.757508 CCTGAGAGCGCCAGAGGA 60.758 66.667 12.96 0.00 33.65 3.71
111 112 4.527583 GCCTGAGAGCGCCAGAGG 62.528 72.222 12.96 10.28 33.65 3.69
112 113 3.016541 AAGCCTGAGAGCGCCAGAG 62.017 63.158 12.96 5.32 38.01 3.35
113 114 2.999648 AAGCCTGAGAGCGCCAGA 61.000 61.111 12.96 0.00 38.01 3.86
114 115 2.818714 CAAGCCTGAGAGCGCCAG 60.819 66.667 2.29 4.16 38.01 4.85
115 116 2.680974 AAACAAGCCTGAGAGCGCCA 62.681 55.000 2.29 0.00 38.01 5.69
116 117 1.518903 AAAACAAGCCTGAGAGCGCC 61.519 55.000 2.29 0.00 38.01 6.53
117 118 1.156736 TAAAACAAGCCTGAGAGCGC 58.843 50.000 0.00 0.00 38.01 5.92
118 119 3.896648 TTTAAAACAAGCCTGAGAGCG 57.103 42.857 0.00 0.00 38.01 5.03
119 120 5.188327 ACTTTTAAAACAAGCCTGAGAGC 57.812 39.130 0.00 0.00 0.00 4.09
120 121 7.012421 ACACTACTTTTAAAACAAGCCTGAGAG 59.988 37.037 0.00 0.00 0.00 3.20
121 122 6.826741 ACACTACTTTTAAAACAAGCCTGAGA 59.173 34.615 0.00 0.00 0.00 3.27
122 123 7.027778 ACACTACTTTTAAAACAAGCCTGAG 57.972 36.000 0.00 0.00 0.00 3.35
123 124 7.338449 AGAACACTACTTTTAAAACAAGCCTGA 59.662 33.333 0.00 0.00 0.00 3.86
124 125 7.480810 AGAACACTACTTTTAAAACAAGCCTG 58.519 34.615 0.00 0.00 0.00 4.85
125 126 7.640597 AGAACACTACTTTTAAAACAAGCCT 57.359 32.000 0.00 0.00 0.00 4.58
126 127 9.961265 ATTAGAACACTACTTTTAAAACAAGCC 57.039 29.630 0.00 0.00 0.00 4.35
154 155 9.299465 TCCCTCCGTAAACTAATAAAAACATTT 57.701 29.630 0.00 0.00 0.00 2.32
155 156 8.866970 TCCCTCCGTAAACTAATAAAAACATT 57.133 30.769 0.00 0.00 0.00 2.71
156 157 8.105197 ACTCCCTCCGTAAACTAATAAAAACAT 58.895 33.333 0.00 0.00 0.00 2.71
157 158 7.452562 ACTCCCTCCGTAAACTAATAAAAACA 58.547 34.615 0.00 0.00 0.00 2.83
158 159 7.912056 ACTCCCTCCGTAAACTAATAAAAAC 57.088 36.000 0.00 0.00 0.00 2.43
162 163 9.646522 ACTTATACTCCCTCCGTAAACTAATAA 57.353 33.333 0.00 0.00 0.00 1.40
163 164 9.071276 CACTTATACTCCCTCCGTAAACTAATA 57.929 37.037 0.00 0.00 0.00 0.98
164 165 7.562821 ACACTTATACTCCCTCCGTAAACTAAT 59.437 37.037 0.00 0.00 0.00 1.73
165 166 6.891908 ACACTTATACTCCCTCCGTAAACTAA 59.108 38.462 0.00 0.00 0.00 2.24
166 167 6.426587 ACACTTATACTCCCTCCGTAAACTA 58.573 40.000 0.00 0.00 0.00 2.24
167 168 5.267587 ACACTTATACTCCCTCCGTAAACT 58.732 41.667 0.00 0.00 0.00 2.66
168 169 5.588958 ACACTTATACTCCCTCCGTAAAC 57.411 43.478 0.00 0.00 0.00 2.01
169 170 6.319658 CAGTACACTTATACTCCCTCCGTAAA 59.680 42.308 0.00 0.00 32.92 2.01
170 171 5.824624 CAGTACACTTATACTCCCTCCGTAA 59.175 44.000 0.00 0.00 32.92 3.18
171 172 5.130975 TCAGTACACTTATACTCCCTCCGTA 59.869 44.000 0.00 0.00 32.92 4.02
172 173 4.080129 TCAGTACACTTATACTCCCTCCGT 60.080 45.833 0.00 0.00 32.92 4.69
173 174 4.458397 TCAGTACACTTATACTCCCTCCG 58.542 47.826 0.00 0.00 32.92 4.63
174 175 6.980416 AATCAGTACACTTATACTCCCTCC 57.020 41.667 0.00 0.00 32.92 4.30
175 176 9.134055 ACTAAATCAGTACACTTATACTCCCTC 57.866 37.037 0.00 0.00 34.98 4.30
217 221 2.429610 GCGGTAGACCTACAATGGAAGA 59.570 50.000 9.15 0.00 37.78 2.87
218 222 2.167693 TGCGGTAGACCTACAATGGAAG 59.832 50.000 9.15 0.00 37.78 3.46
219 223 2.167693 CTGCGGTAGACCTACAATGGAA 59.832 50.000 9.15 0.00 37.78 3.53
220 224 1.754803 CTGCGGTAGACCTACAATGGA 59.245 52.381 9.15 0.05 37.78 3.41
221 225 1.480954 ACTGCGGTAGACCTACAATGG 59.519 52.381 0.00 0.00 37.78 3.16
222 226 2.961526 ACTGCGGTAGACCTACAATG 57.038 50.000 0.00 0.59 37.78 2.82
225 229 2.522185 AGAAACTGCGGTAGACCTACA 58.478 47.619 0.00 0.00 37.78 2.74
391 402 1.081774 GATGGATCGGTCGAGCTCG 60.082 63.158 30.03 30.03 41.45 5.03
392 403 0.239879 GAGATGGATCGGTCGAGCTC 59.760 60.000 10.23 10.23 38.20 4.09
393 404 1.175983 GGAGATGGATCGGTCGAGCT 61.176 60.000 13.48 0.00 31.18 4.09
457 468 2.228822 GTGCGTGGACTTGGAATTCAAT 59.771 45.455 7.93 0.00 34.45 2.57
458 469 1.606668 GTGCGTGGACTTGGAATTCAA 59.393 47.619 7.93 0.00 0.00 2.69
660 684 2.658593 CGAGCGCGGTGGATAAGG 60.659 66.667 18.92 0.00 0.00 2.69
694 718 4.426313 GGGAGCGGTTTGGAGGGG 62.426 72.222 0.00 0.00 0.00 4.79
697 721 2.434359 GACGGGAGCGGTTTGGAG 60.434 66.667 0.00 0.00 0.00 3.86
698 722 2.920912 AGACGGGAGCGGTTTGGA 60.921 61.111 0.00 0.00 0.00 3.53
700 724 3.423154 GCAGACGGGAGCGGTTTG 61.423 66.667 0.00 0.00 0.00 2.93
706 730 4.090057 GCAAACGCAGACGGGAGC 62.090 66.667 0.00 0.00 46.04 4.70
707 731 1.901650 GAAGCAAACGCAGACGGGAG 61.902 60.000 0.00 0.00 46.04 4.30
708 732 1.959226 GAAGCAAACGCAGACGGGA 60.959 57.895 0.00 0.00 46.04 5.14
709 733 1.961277 AGAAGCAAACGCAGACGGG 60.961 57.895 0.00 0.00 46.04 5.28
710 734 1.205064 CAGAAGCAAACGCAGACGG 59.795 57.895 0.00 0.00 46.04 4.79
712 736 2.135933 AGTACAGAAGCAAACGCAGAC 58.864 47.619 0.00 0.00 0.00 3.51
713 737 2.035961 AGAGTACAGAAGCAAACGCAGA 59.964 45.455 0.00 0.00 0.00 4.26
714 738 2.408050 AGAGTACAGAAGCAAACGCAG 58.592 47.619 0.00 0.00 0.00 5.18
715 739 2.035961 AGAGAGTACAGAAGCAAACGCA 59.964 45.455 0.00 0.00 0.00 5.24
724 748 7.914427 AGAGAGAGATAGAGAGAGTACAGAA 57.086 40.000 0.00 0.00 0.00 3.02
739 763 0.187361 CGGGGGAGGAAGAGAGAGAT 59.813 60.000 0.00 0.00 0.00 2.75
885 914 5.467063 TGCGCTATATACGGAGAGATCTATG 59.533 44.000 9.73 0.00 0.00 2.23
923 953 2.774007 CTAGCGAGCAAAAATGAACCG 58.226 47.619 0.00 0.00 0.00 4.44
961 991 2.609609 TCTCCCTCCCTACTCCTACT 57.390 55.000 0.00 0.00 0.00 2.57
973 1003 1.142965 GCCTCTCGCTTTCTCCCTC 59.857 63.158 0.00 0.00 0.00 4.30
1036 1066 4.530857 CTCGATCGCCACCACCCC 62.531 72.222 11.09 0.00 0.00 4.95
1037 1067 3.771160 ACTCGATCGCCACCACCC 61.771 66.667 11.09 0.00 0.00 4.61
1240 1270 2.989824 CTCCACGGACGTGTCCCT 60.990 66.667 21.52 0.00 46.96 4.20
1551 1591 1.065491 CGGATGATGGTGGAAACTGGA 60.065 52.381 0.00 0.00 0.00 3.86
1552 1592 1.065491 TCGGATGATGGTGGAAACTGG 60.065 52.381 0.00 0.00 0.00 4.00
1553 1593 2.401583 TCGGATGATGGTGGAAACTG 57.598 50.000 0.00 0.00 0.00 3.16
1554 1594 2.158755 GGATCGGATGATGGTGGAAACT 60.159 50.000 0.00 0.00 34.09 2.66
1555 1595 2.222027 GGATCGGATGATGGTGGAAAC 58.778 52.381 0.00 0.00 34.09 2.78
1556 1596 1.202639 CGGATCGGATGATGGTGGAAA 60.203 52.381 0.00 0.00 34.09 3.13
1557 1597 0.392706 CGGATCGGATGATGGTGGAA 59.607 55.000 0.00 0.00 34.09 3.53
1670 1710 2.545526 ACTCAGTCGACGACTTTTACGA 59.454 45.455 27.28 18.95 41.37 3.43
1671 1711 2.913613 ACTCAGTCGACGACTTTTACG 58.086 47.619 27.28 15.82 41.37 3.18
1672 1712 5.606936 CGAAAACTCAGTCGACGACTTTTAC 60.607 44.000 27.28 15.98 41.37 2.01
1673 1713 4.438797 CGAAAACTCAGTCGACGACTTTTA 59.561 41.667 27.28 14.69 41.37 1.52
1674 1714 3.242248 CGAAAACTCAGTCGACGACTTTT 59.758 43.478 27.28 23.03 41.37 2.27
1681 1721 2.658285 TGTAGCGAAAACTCAGTCGAC 58.342 47.619 7.70 7.70 39.64 4.20
1786 1826 1.815817 ATTCAAAGCCGCACCAACCC 61.816 55.000 0.00 0.00 0.00 4.11
1795 1835 0.454957 CGCCTGTCAATTCAAAGCCG 60.455 55.000 0.00 0.00 0.00 5.52
1815 1856 0.928229 AACGATAAAGATGGCGTCGC 59.072 50.000 9.22 9.22 35.74 5.19
1817 1858 4.567159 AGAGAAAACGATAAAGATGGCGTC 59.433 41.667 0.00 0.00 35.74 5.19
1818 1859 4.504858 AGAGAAAACGATAAAGATGGCGT 58.495 39.130 0.00 0.00 38.81 5.68
1819 1860 4.025647 GGAGAGAAAACGATAAAGATGGCG 60.026 45.833 0.00 0.00 0.00 5.69
1820 1861 4.273724 GGGAGAGAAAACGATAAAGATGGC 59.726 45.833 0.00 0.00 0.00 4.40
1862 1903 1.983972 AGGAATTCTATCGCGATCGC 58.016 50.000 29.80 29.80 35.26 4.58
1910 1951 9.653516 TTGTGGATCTTATCTAAGAGAAGAGAT 57.346 33.333 11.31 11.31 42.00 2.75
1911 1952 9.130661 CTTGTGGATCTTATCTAAGAGAAGAGA 57.869 37.037 3.65 7.77 42.00 3.10
1912 1953 9.130661 TCTTGTGGATCTTATCTAAGAGAAGAG 57.869 37.037 3.65 3.32 42.00 2.85
1914 1955 8.912988 AGTCTTGTGGATCTTATCTAAGAGAAG 58.087 37.037 5.92 0.00 44.67 2.85
1917 1958 7.432869 CCAGTCTTGTGGATCTTATCTAAGAG 58.567 42.308 5.92 0.00 44.67 2.85
1918 1959 6.325028 CCCAGTCTTGTGGATCTTATCTAAGA 59.675 42.308 2.32 2.32 40.44 2.10
1919 1960 6.098982 ACCCAGTCTTGTGGATCTTATCTAAG 59.901 42.308 0.00 0.00 40.44 2.18
1929 1970 1.823250 GCCAAACCCAGTCTTGTGGAT 60.823 52.381 0.00 0.00 40.44 3.41
1983 2024 4.683832 ACGTAGCTACAACTGATCCATTC 58.316 43.478 23.21 0.00 0.00 2.67
1984 2025 4.737855 ACGTAGCTACAACTGATCCATT 57.262 40.909 23.21 0.00 0.00 3.16
1985 2026 4.081642 ACAACGTAGCTACAACTGATCCAT 60.082 41.667 23.21 0.00 0.00 3.41
1986 2027 3.257375 ACAACGTAGCTACAACTGATCCA 59.743 43.478 23.21 0.00 0.00 3.41
1987 2028 3.846360 ACAACGTAGCTACAACTGATCC 58.154 45.455 23.21 0.00 0.00 3.36
1988 2029 6.939551 TTTACAACGTAGCTACAACTGATC 57.060 37.500 23.21 0.00 0.00 2.92
1989 2030 7.718272 TTTTTACAACGTAGCTACAACTGAT 57.282 32.000 23.21 6.20 0.00 2.90
1990 2031 7.718272 ATTTTTACAACGTAGCTACAACTGA 57.282 32.000 23.21 2.89 0.00 3.41
2006 2047 6.843208 TCGATCACGCCAAATTATTTTTACA 58.157 32.000 0.00 0.00 39.58 2.41
2083 2124 6.526566 AGCTAAAAGACTAAAACTGACACG 57.473 37.500 0.00 0.00 0.00 4.49
2227 2295 1.298859 GCAGGCCAAGTTACCAGTCG 61.299 60.000 5.01 0.00 0.00 4.18
2255 2323 6.711277 TGATGTAGCCTGTAAGACAATTCTT 58.289 36.000 0.00 0.00 44.70 2.52
2261 2329 3.197549 TGCATGATGTAGCCTGTAAGACA 59.802 43.478 0.00 0.00 34.07 3.41
2262 2330 3.797039 TGCATGATGTAGCCTGTAAGAC 58.203 45.455 0.00 0.00 34.07 3.01
2263 2331 3.706086 TCTGCATGATGTAGCCTGTAAGA 59.294 43.478 5.60 0.00 29.10 2.10
2266 2334 3.999046 CATCTGCATGATGTAGCCTGTA 58.001 45.455 5.60 0.00 45.55 2.74
2267 2335 2.847441 CATCTGCATGATGTAGCCTGT 58.153 47.619 5.60 0.00 45.55 4.00
2268 2336 3.676093 ATCATCTGCATGATGTAGCCTG 58.324 45.455 19.16 6.19 46.38 4.85
2277 2345 3.562557 GCATGTACACATCATCTGCATGA 59.437 43.478 9.82 0.00 43.45 3.07
2278 2346 3.314080 TGCATGTACACATCATCTGCATG 59.686 43.478 12.71 0.00 33.61 4.06
2279 2347 3.314357 GTGCATGTACACATCATCTGCAT 59.686 43.478 18.08 0.00 40.40 3.96
2280 2348 2.679336 GTGCATGTACACATCATCTGCA 59.321 45.455 12.71 12.71 40.40 4.41
2281 2349 2.941064 AGTGCATGTACACATCATCTGC 59.059 45.455 16.62 2.70 43.23 4.26
2319 2413 3.406764 GTCTCTCCTGTGCAGTCAAATT 58.593 45.455 0.00 0.00 0.00 1.82
2320 2414 2.289945 GGTCTCTCCTGTGCAGTCAAAT 60.290 50.000 0.00 0.00 0.00 2.32
2327 2421 3.695606 GGCGGTCTCTCCTGTGCA 61.696 66.667 0.00 0.00 0.00 4.57
2329 2423 2.575993 CAGGCGGTCTCTCCTGTG 59.424 66.667 0.35 0.00 43.66 3.66
2338 2432 2.474816 CACTAGCTTAATCAGGCGGTC 58.525 52.381 0.00 0.00 0.00 4.79
2344 2438 5.651530 TCTCGAAACCACTAGCTTAATCAG 58.348 41.667 0.00 0.00 0.00 2.90
2351 2445 6.739008 GCCTAATAATCTCGAAACCACTAGCT 60.739 42.308 0.00 0.00 0.00 3.32
2387 2546 3.217626 GGTGCACTACCGTATACCTAGT 58.782 50.000 17.98 0.05 40.26 2.57
2388 2547 3.911661 GGTGCACTACCGTATACCTAG 57.088 52.381 17.98 0.00 40.26 3.02
2430 2589 4.693566 TGATTCGTGTGTTTGGTAAGATCC 59.306 41.667 0.00 0.00 0.00 3.36
2445 2604 4.950050 AGGGCTAGACTAAATGATTCGTG 58.050 43.478 0.00 0.00 0.00 4.35
2446 2605 5.834204 ACTAGGGCTAGACTAAATGATTCGT 59.166 40.000 0.00 0.00 36.97 3.85
2465 2624 1.115930 AGTAGGGGCATGCGACTAGG 61.116 60.000 17.19 0.00 0.00 3.02
2480 2639 0.610174 TGTCTGCTGCCTGGAAGTAG 59.390 55.000 13.29 13.29 0.00 2.57
2521 2680 6.373186 TGAATGATTGAATCAGATGCAGAC 57.627 37.500 13.79 0.40 43.53 3.51
2547 2707 3.332034 ACCTTGCCGTGTAGTATGAAAC 58.668 45.455 0.00 0.00 0.00 2.78
2548 2708 3.592059 GACCTTGCCGTGTAGTATGAAA 58.408 45.455 0.00 0.00 0.00 2.69
2549 2709 2.416296 CGACCTTGCCGTGTAGTATGAA 60.416 50.000 0.00 0.00 0.00 2.57
2550 2710 1.133598 CGACCTTGCCGTGTAGTATGA 59.866 52.381 0.00 0.00 0.00 2.15
2551 2711 1.135199 ACGACCTTGCCGTGTAGTATG 60.135 52.381 0.00 0.00 38.97 2.39
2552 2712 1.133790 GACGACCTTGCCGTGTAGTAT 59.866 52.381 0.00 0.00 40.67 2.12
2553 2713 0.523072 GACGACCTTGCCGTGTAGTA 59.477 55.000 0.00 0.00 40.67 1.82
2554 2714 1.288127 GACGACCTTGCCGTGTAGT 59.712 57.895 0.00 0.00 40.67 2.73
2555 2715 1.445582 GGACGACCTTGCCGTGTAG 60.446 63.158 0.00 0.00 40.67 2.74
2556 2716 2.201708 TGGACGACCTTGCCGTGTA 61.202 57.895 5.33 0.00 40.67 2.90
2557 2717 3.542676 TGGACGACCTTGCCGTGT 61.543 61.111 5.33 0.00 40.67 4.49
2566 2726 1.523758 AAATCAGCAAGTGGACGACC 58.476 50.000 0.00 0.00 0.00 4.79
2568 2728 3.678056 ACTAAATCAGCAAGTGGACGA 57.322 42.857 0.00 0.00 0.00 4.20
2597 2757 0.248825 CGATCTCAGAGGAACAGCGG 60.249 60.000 0.00 0.00 0.00 5.52
2616 2776 2.284417 GTGAATCTCCGAACCGCATTAC 59.716 50.000 0.00 0.00 0.00 1.89
2676 2838 2.281484 TCCTGGTGCGAACAAGCC 60.281 61.111 0.00 0.00 36.02 4.35
2714 2876 7.290118 GCAATCATGTGCGAGTTTTTATTTTT 58.710 30.769 0.00 0.00 34.21 1.94
2715 2877 6.820459 GCAATCATGTGCGAGTTTTTATTTT 58.180 32.000 0.00 0.00 34.21 1.82
2763 2925 3.719924 CAGAGGAATCTCAAGCTAGCTG 58.280 50.000 20.16 12.65 42.34 4.24
2764 2926 2.102925 GCAGAGGAATCTCAAGCTAGCT 59.897 50.000 12.68 12.68 42.34 3.32
2765 2927 2.158986 TGCAGAGGAATCTCAAGCTAGC 60.159 50.000 6.62 6.62 42.34 3.42
2766 2928 3.815856 TGCAGAGGAATCTCAAGCTAG 57.184 47.619 0.00 0.00 42.34 3.42
2767 2929 4.558226 TTTGCAGAGGAATCTCAAGCTA 57.442 40.909 0.00 3.12 42.34 3.32
2828 3030 5.375417 TCTAACACTATTTCGAACCGTGA 57.625 39.130 20.82 0.00 0.00 4.35
2833 3035 8.252964 AGGACATTTCTAACACTATTTCGAAC 57.747 34.615 0.00 0.00 0.00 3.95
2843 3045 6.534079 ACGTAGCATTAGGACATTTCTAACAC 59.466 38.462 0.00 0.00 30.61 3.32
2844 3046 6.636705 ACGTAGCATTAGGACATTTCTAACA 58.363 36.000 0.00 0.00 30.61 2.41
2854 3221 2.135933 GCCATGACGTAGCATTAGGAC 58.864 52.381 0.00 0.00 0.00 3.85
2857 3224 1.139989 CGGCCATGACGTAGCATTAG 58.860 55.000 2.24 0.00 0.00 1.73
2932 3302 4.361971 ACCACCCGAGAGCTCCGA 62.362 66.667 21.43 0.00 0.00 4.55
2933 3303 4.135153 CACCACCCGAGAGCTCCG 62.135 72.222 10.93 13.53 0.00 4.63
3230 3600 4.218200 ACACGATCATTCTGATGGCAAAAA 59.782 37.500 0.00 0.00 37.20 1.94
3231 3601 3.758023 ACACGATCATTCTGATGGCAAAA 59.242 39.130 0.00 0.00 37.20 2.44
3232 3602 3.127376 CACACGATCATTCTGATGGCAAA 59.873 43.478 0.00 0.00 37.20 3.68
3249 3619 1.028905 ACCAAAACATCCCACACACG 58.971 50.000 0.00 0.00 0.00 4.49
3255 3625 4.467795 TCAGAAAAACACCAAAACATCCCA 59.532 37.500 0.00 0.00 0.00 4.37
3383 3754 1.020437 GGTAGTCCTCGAACCCGTAG 58.980 60.000 0.00 0.00 37.05 3.51
3530 3901 1.146263 CTCCGGCATTGGTACCTCC 59.854 63.158 14.36 8.09 0.00 4.30
3567 3938 5.763204 GCACTAGAGCTAGAACTAGAGACAT 59.237 44.000 21.88 5.02 39.25 3.06
3568 3939 5.120399 GCACTAGAGCTAGAACTAGAGACA 58.880 45.833 21.88 0.00 39.25 3.41
3596 3967 2.693069 ACCAAGAGCGAATCAGTTCAG 58.307 47.619 0.00 0.00 33.86 3.02
3616 3987 0.687098 CCTGCACCCCATTGCCATTA 60.687 55.000 0.00 0.00 42.25 1.90
3622 3993 2.284112 AAGCCCTGCACCCCATTG 60.284 61.111 0.00 0.00 0.00 2.82
3658 4029 0.802607 GGTCGCTGTCGTCTTCCATC 60.803 60.000 0.00 0.00 36.96 3.51
3889 4260 2.109126 GCCGAAGTCCCACATGAGC 61.109 63.158 0.00 0.00 0.00 4.26
4124 4495 2.602878 GTAGTCGAGGCGTTTCATCAA 58.397 47.619 0.00 0.00 0.00 2.57
4138 4509 3.179265 CGGCCAAGCACGTAGTCG 61.179 66.667 2.24 0.00 41.61 4.18
4149 4520 2.668212 GTACAGCACAGCGGCCAA 60.668 61.111 2.24 0.00 0.00 4.52
4236 4607 4.282496 AGTTATAGTCCACTCCACTCTGG 58.718 47.826 0.00 0.00 39.43 3.86
4257 4628 9.379791 CTAGTAACACTATTTTAGGGGTCAAAG 57.620 37.037 0.00 0.00 32.03 2.77
4349 4720 1.651138 CAGCGTTGCTCTCTACGAAAG 59.349 52.381 0.00 0.00 42.50 2.62
4359 4730 5.207563 ACTGAACTGATATCAGCGTTGCTC 61.208 45.833 28.86 16.71 46.56 4.26
4486 4857 7.661437 TCCATGCTAAGTATATGTCCATTTGAC 59.339 37.037 0.00 0.00 44.72 3.18
4697 5076 3.080319 GGAACAAGAGCTCTCAGCAATT 58.920 45.455 18.55 5.31 45.56 2.32
4700 5079 1.051008 TGGAACAAGAGCTCTCAGCA 58.949 50.000 18.55 3.99 38.93 4.41
4733 5112 6.878317 TGCTCATAGTTATCCACCTATATGC 58.122 40.000 0.00 0.00 0.00 3.14
4742 5121 4.717877 CACCCAATGCTCATAGTTATCCA 58.282 43.478 0.00 0.00 0.00 3.41
4859 5238 1.047596 ATCCTCTGTGCTCTGCCGAT 61.048 55.000 0.00 0.00 0.00 4.18
4873 5252 4.253685 TCGTGACAATTTCCAGAATCCTC 58.746 43.478 0.00 0.00 0.00 3.71
4888 5267 1.324383 TGTCTGCTAACCTCGTGACA 58.676 50.000 0.00 0.00 32.91 3.58
4931 5312 4.042062 AGTTTGTGGAGGATCTCATCAACA 59.958 41.667 0.00 0.00 38.65 3.33
5042 5423 1.885887 GTGCAGTTGGAATGGCTTACA 59.114 47.619 0.00 0.00 0.00 2.41
5073 5454 9.066892 ACACACTAAACTGTCAATATTTGATGT 57.933 29.630 0.00 0.00 42.47 3.06
5094 5475 0.664761 AGTGAAGCATGTGCACACAC 59.335 50.000 24.37 23.53 45.05 3.82
5095 5476 1.872952 GTAGTGAAGCATGTGCACACA 59.127 47.619 24.37 12.64 45.49 3.72
5096 5477 1.197721 GGTAGTGAAGCATGTGCACAC 59.802 52.381 24.37 10.87 44.42 3.82
5097 5478 1.202746 TGGTAGTGAAGCATGTGCACA 60.203 47.619 24.08 24.08 45.16 4.57
5098 5479 1.197721 GTGGTAGTGAAGCATGTGCAC 59.802 52.381 10.75 10.75 45.16 4.57
5099 5480 1.202746 TGTGGTAGTGAAGCATGTGCA 60.203 47.619 7.83 0.00 45.16 4.57
5100 5481 1.197721 GTGTGGTAGTGAAGCATGTGC 59.802 52.381 0.00 0.00 38.03 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.