Multiple sequence alignment - TraesCS6A01G280700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G280700 chr6A 100.000 3164 0 0 1 3164 509563276 509560113 0.000000e+00 5843.0
1 TraesCS6A01G280700 chr6A 90.008 1231 122 1 984 2213 508293989 508295219 0.000000e+00 1591.0
2 TraesCS6A01G280700 chr6A 88.604 1211 121 7 953 2162 508333645 508334839 0.000000e+00 1456.0
3 TraesCS6A01G280700 chr6A 86.193 1253 144 12 945 2176 509285828 509284584 0.000000e+00 1328.0
4 TraesCS6A01G280700 chr6A 85.294 68 5 4 2627 2693 599644561 599644624 7.330000e-07 65.8
5 TraesCS6A01G280700 chr6D 94.942 2234 67 17 943 3164 368741077 368738878 0.000000e+00 3458.0
6 TraesCS6A01G280700 chr6D 89.338 1238 129 3 977 2213 367864900 367866135 0.000000e+00 1552.0
7 TraesCS6A01G280700 chr6D 89.492 1180 115 1 983 2162 367875933 367877103 0.000000e+00 1483.0
8 TraesCS6A01G280700 chr6D 87.237 1238 154 4 942 2176 368372280 368371044 0.000000e+00 1408.0
9 TraesCS6A01G280700 chr6D 94.570 221 11 1 729 948 368741367 368741147 1.090000e-89 340.0
10 TraesCS6A01G280700 chr6B 89.602 1231 127 1 984 2213 554165587 554164357 0.000000e+00 1563.0
11 TraesCS6A01G280700 chr6B 88.751 1209 124 7 953 2161 554123770 554122574 0.000000e+00 1469.0
12 TraesCS6A01G280700 chr6B 89.008 373 35 4 1 368 554668864 554668493 1.030000e-124 457.0
13 TraesCS6A01G280700 chr6B 94.093 237 11 3 712 948 554659349 554659116 1.080000e-94 357.0
14 TraesCS6A01G280700 chr6B 99.115 113 1 0 2994 3106 554652076 554651964 1.490000e-48 204.0
15 TraesCS6A01G280700 chr6B 88.785 107 10 2 465 570 554668421 554668316 2.560000e-26 130.0
16 TraesCS6A01G280700 chr1D 84.687 431 60 3 945 1375 93821384 93821808 2.920000e-115 425.0
17 TraesCS6A01G280700 chr1D 85.294 68 5 4 2627 2693 75898333 75898396 7.330000e-07 65.8
18 TraesCS6A01G280700 chr7A 84.071 226 35 1 144 368 579263630 579263405 1.910000e-52 217.0
19 TraesCS6A01G280700 chr7A 85.294 68 5 4 2627 2693 40724879 40724942 7.330000e-07 65.8
20 TraesCS6A01G280700 chr7A 83.824 68 6 4 2627 2693 40730633 40730696 3.410000e-05 60.2
21 TraesCS6A01G280700 chr7D 80.658 243 43 4 129 368 508656384 508656143 5.390000e-43 185.0
22 TraesCS6A01G280700 chr7D 85.629 167 15 4 474 631 508656063 508655897 1.950000e-37 167.0
23 TraesCS6A01G280700 chr7B 80.952 231 42 2 143 371 537138056 537137826 6.970000e-42 182.0
24 TraesCS6A01G280700 chr7B 82.184 174 20 4 474 636 537137037 537136864 4.260000e-29 139.0
25 TraesCS6A01G280700 chr2B 88.514 148 16 1 222 368 776359563 776359710 9.020000e-41 178.0
26 TraesCS6A01G280700 chr2D 81.633 196 27 2 3 198 633128683 633128869 1.520000e-33 154.0
27 TraesCS6A01G280700 chr2D 88.000 75 9 0 294 368 633189602 633189676 4.350000e-14 89.8
28 TraesCS6A01G280700 chr5A 85.294 68 5 4 2627 2693 546868693 546868630 7.330000e-07 65.8
29 TraesCS6A01G280700 chr3A 85.294 68 5 4 2627 2693 56658953 56659016 7.330000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G280700 chr6A 509560113 509563276 3163 True 5843.0 5843 100.0000 1 3164 1 chr6A.!!$R2 3163
1 TraesCS6A01G280700 chr6A 508293989 508295219 1230 False 1591.0 1591 90.0080 984 2213 1 chr6A.!!$F1 1229
2 TraesCS6A01G280700 chr6A 508333645 508334839 1194 False 1456.0 1456 88.6040 953 2162 1 chr6A.!!$F2 1209
3 TraesCS6A01G280700 chr6A 509284584 509285828 1244 True 1328.0 1328 86.1930 945 2176 1 chr6A.!!$R1 1231
4 TraesCS6A01G280700 chr6D 368738878 368741367 2489 True 1899.0 3458 94.7560 729 3164 2 chr6D.!!$R2 2435
5 TraesCS6A01G280700 chr6D 367864900 367866135 1235 False 1552.0 1552 89.3380 977 2213 1 chr6D.!!$F1 1236
6 TraesCS6A01G280700 chr6D 367875933 367877103 1170 False 1483.0 1483 89.4920 983 2162 1 chr6D.!!$F2 1179
7 TraesCS6A01G280700 chr6D 368371044 368372280 1236 True 1408.0 1408 87.2370 942 2176 1 chr6D.!!$R1 1234
8 TraesCS6A01G280700 chr6B 554164357 554165587 1230 True 1563.0 1563 89.6020 984 2213 1 chr6B.!!$R2 1229
9 TraesCS6A01G280700 chr6B 554122574 554123770 1196 True 1469.0 1469 88.7510 953 2161 1 chr6B.!!$R1 1208
10 TraesCS6A01G280700 chr6B 554668316 554668864 548 True 293.5 457 88.8965 1 570 2 chr6B.!!$R5 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 826 0.031721 CTATAGCCGGTCCCGTCAAC 59.968 60.0 1.9 0.0 37.81 3.18 F
1743 1845 0.321210 TGTCGTTCGCCATGTTGGAT 60.321 50.0 0.0 0.0 40.96 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2101 1.036481 TGGCGTGGTAGTGCGGTATA 61.036 55.000 0.00 0.00 0.00 1.47 R
2917 3035 4.654091 ATATTTTTCGAACCATGCAGGG 57.346 40.909 17.55 17.55 43.89 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.594303 TGTTGCTGCCTTGGACCG 60.594 61.111 0.00 0.00 0.00 4.79
28 29 4.043200 GTTGCTGCCTTGGACCGC 62.043 66.667 0.00 0.00 0.00 5.68
45 46 1.072505 GCGGGAAGAGAACCACCAA 59.927 57.895 0.00 0.00 0.00 3.67
71 72 4.394712 GGAGCACGTCCACCCAGG 62.395 72.222 0.00 0.00 46.10 4.45
89 90 0.465824 GGCTGCATCATCCTTGAGCT 60.466 55.000 0.50 0.00 34.73 4.09
93 94 1.216122 GCATCATCCTTGAGCTCGAC 58.784 55.000 9.64 0.00 34.73 4.20
101 102 0.455295 CTTGAGCTCGACGTCCTCAC 60.455 60.000 18.78 3.89 35.52 3.51
112 113 3.770040 TCCTCACGCCGTGGGATG 61.770 66.667 20.66 2.34 35.82 3.51
157 158 2.507324 GTGCTCGTCGCCTTCCTC 60.507 66.667 0.00 0.00 38.05 3.71
163 164 1.370657 CGTCGCCTTCCTCGCTATC 60.371 63.158 0.00 0.00 0.00 2.08
171 172 1.600511 TTCCTCGCTATCGTGTGGCA 61.601 55.000 0.00 0.00 33.18 4.92
172 173 1.589993 CCTCGCTATCGTGTGGCAG 60.590 63.158 0.00 0.00 33.18 4.85
250 251 0.321564 GTGAGGGCACATGTGTAGCA 60.322 55.000 26.01 16.06 44.51 3.49
251 252 0.036105 TGAGGGCACATGTGTAGCAG 60.036 55.000 26.01 0.70 0.00 4.24
252 253 0.036010 GAGGGCACATGTGTAGCAGT 60.036 55.000 26.01 6.37 0.00 4.40
253 254 0.321919 AGGGCACATGTGTAGCAGTG 60.322 55.000 26.01 0.00 35.19 3.66
254 255 0.606401 GGGCACATGTGTAGCAGTGT 60.606 55.000 26.01 0.00 34.59 3.55
255 256 1.238439 GGCACATGTGTAGCAGTGTT 58.762 50.000 26.01 0.00 34.59 3.32
256 257 1.069022 GGCACATGTGTAGCAGTGTTG 60.069 52.381 26.01 0.00 34.59 3.33
257 258 1.603802 GCACATGTGTAGCAGTGTTGT 59.396 47.619 26.01 0.00 34.59 3.32
258 259 2.602933 GCACATGTGTAGCAGTGTTGTG 60.603 50.000 26.01 0.00 37.40 3.33
259 260 2.031769 CACATGTGTAGCAGTGTTGTGG 60.032 50.000 18.03 0.00 33.22 4.17
260 261 2.221169 CATGTGTAGCAGTGTTGTGGT 58.779 47.619 0.00 0.00 0.00 4.16
261 262 2.411628 TGTGTAGCAGTGTTGTGGTT 57.588 45.000 0.00 0.00 0.00 3.67
262 263 2.717390 TGTGTAGCAGTGTTGTGGTTT 58.283 42.857 0.00 0.00 0.00 3.27
263 264 2.421775 TGTGTAGCAGTGTTGTGGTTTG 59.578 45.455 0.00 0.00 0.00 2.93
264 265 1.403679 TGTAGCAGTGTTGTGGTTTGC 59.596 47.619 0.00 0.00 35.09 3.68
265 266 1.676006 GTAGCAGTGTTGTGGTTTGCT 59.324 47.619 2.68 2.68 46.03 3.91
266 267 1.185315 AGCAGTGTTGTGGTTTGCTT 58.815 45.000 0.00 0.00 42.01 3.91
267 268 1.135024 AGCAGTGTTGTGGTTTGCTTG 60.135 47.619 0.00 0.00 42.01 4.01
268 269 1.280066 CAGTGTTGTGGTTTGCTTGC 58.720 50.000 0.00 0.00 0.00 4.01
269 270 0.179140 AGTGTTGTGGTTTGCTTGCG 60.179 50.000 0.00 0.00 0.00 4.85
270 271 1.140589 TGTTGTGGTTTGCTTGCGG 59.859 52.632 0.00 0.00 0.00 5.69
271 272 1.140804 GTTGTGGTTTGCTTGCGGT 59.859 52.632 0.00 0.00 0.00 5.68
272 273 1.140589 TTGTGGTTTGCTTGCGGTG 59.859 52.632 0.00 0.00 0.00 4.94
273 274 2.658268 GTGGTTTGCTTGCGGTGC 60.658 61.111 0.00 0.00 0.00 5.01
274 275 3.143515 TGGTTTGCTTGCGGTGCA 61.144 55.556 0.00 0.00 38.80 4.57
275 276 2.339712 GGTTTGCTTGCGGTGCAT 59.660 55.556 0.00 0.00 38.76 3.96
276 277 2.023223 GGTTTGCTTGCGGTGCATG 61.023 57.895 0.00 0.00 38.76 4.06
277 278 2.023223 GTTTGCTTGCGGTGCATGG 61.023 57.895 6.78 0.00 38.76 3.66
278 279 3.862394 TTTGCTTGCGGTGCATGGC 62.862 57.895 5.11 5.11 38.76 4.40
288 289 4.445710 TGCATGGCCCGCCTCAAT 62.446 61.111 11.46 0.00 36.94 2.57
289 290 3.908081 GCATGGCCCGCCTCAATG 61.908 66.667 7.35 3.84 36.94 2.82
290 291 3.221389 CATGGCCCGCCTCAATGG 61.221 66.667 7.35 0.00 36.94 3.16
308 309 4.056125 CTGACGCCACGCTGGAGA 62.056 66.667 13.01 0.00 39.92 3.71
309 310 3.362399 CTGACGCCACGCTGGAGAT 62.362 63.158 13.01 0.58 39.92 2.75
310 311 2.583593 GACGCCACGCTGGAGATC 60.584 66.667 13.01 0.00 39.92 2.75
311 312 3.356639 GACGCCACGCTGGAGATCA 62.357 63.158 13.01 0.00 39.92 2.92
312 313 2.125552 CGCCACGCTGGAGATCAA 60.126 61.111 8.04 0.00 39.92 2.57
313 314 2.169789 CGCCACGCTGGAGATCAAG 61.170 63.158 8.04 0.00 39.92 3.02
314 315 1.219124 GCCACGCTGGAGATCAAGA 59.781 57.895 8.04 0.00 40.96 3.02
315 316 0.179062 GCCACGCTGGAGATCAAGAT 60.179 55.000 8.04 0.00 40.96 2.40
316 317 1.069204 GCCACGCTGGAGATCAAGATA 59.931 52.381 8.04 0.00 40.96 1.98
317 318 2.865670 GCCACGCTGGAGATCAAGATAG 60.866 54.545 8.04 0.00 40.96 2.08
318 319 2.402305 CACGCTGGAGATCAAGATAGC 58.598 52.381 0.00 0.00 0.00 2.97
319 320 2.035704 CACGCTGGAGATCAAGATAGCT 59.964 50.000 0.00 0.00 0.00 3.32
320 321 3.254411 CACGCTGGAGATCAAGATAGCTA 59.746 47.826 0.00 0.00 0.00 3.32
321 322 3.505680 ACGCTGGAGATCAAGATAGCTAG 59.494 47.826 0.00 0.00 0.00 3.42
322 323 3.119531 CGCTGGAGATCAAGATAGCTAGG 60.120 52.174 0.00 0.00 0.00 3.02
323 324 3.195396 GCTGGAGATCAAGATAGCTAGGG 59.805 52.174 0.00 0.00 0.00 3.53
324 325 4.415596 CTGGAGATCAAGATAGCTAGGGT 58.584 47.826 0.00 0.00 0.00 4.34
325 326 4.820775 TGGAGATCAAGATAGCTAGGGTT 58.179 43.478 0.00 0.00 0.00 4.11
326 327 4.590647 TGGAGATCAAGATAGCTAGGGTTG 59.409 45.833 0.00 3.05 0.00 3.77
327 328 4.020662 GGAGATCAAGATAGCTAGGGTTGG 60.021 50.000 0.00 0.00 0.00 3.77
328 329 3.906846 AGATCAAGATAGCTAGGGTTGGG 59.093 47.826 0.00 0.00 0.00 4.12
329 330 2.408565 TCAAGATAGCTAGGGTTGGGG 58.591 52.381 0.00 0.00 0.00 4.96
330 331 2.022428 TCAAGATAGCTAGGGTTGGGGA 60.022 50.000 0.00 0.00 0.00 4.81
331 332 2.777692 CAAGATAGCTAGGGTTGGGGAA 59.222 50.000 0.00 0.00 0.00 3.97
332 333 2.695585 AGATAGCTAGGGTTGGGGAAG 58.304 52.381 0.00 0.00 0.00 3.46
333 334 1.700186 GATAGCTAGGGTTGGGGAAGG 59.300 57.143 0.00 0.00 0.00 3.46
334 335 0.720232 TAGCTAGGGTTGGGGAAGGA 59.280 55.000 0.00 0.00 0.00 3.36
335 336 0.621862 AGCTAGGGTTGGGGAAGGAG 60.622 60.000 0.00 0.00 0.00 3.69
336 337 1.636769 GCTAGGGTTGGGGAAGGAGG 61.637 65.000 0.00 0.00 0.00 4.30
337 338 0.253207 CTAGGGTTGGGGAAGGAGGT 60.253 60.000 0.00 0.00 0.00 3.85
338 339 1.009183 CTAGGGTTGGGGAAGGAGGTA 59.991 57.143 0.00 0.00 0.00 3.08
339 340 0.549413 AGGGTTGGGGAAGGAGGTAC 60.549 60.000 0.00 0.00 0.00 3.34
351 352 4.668151 AGGTACTCTCGAGGGCTG 57.332 61.111 13.59 3.23 0.00 4.85
352 353 1.755008 AGGTACTCTCGAGGGCTGC 60.755 63.158 13.59 3.29 0.00 5.25
353 354 2.052690 GGTACTCTCGAGGGCTGCA 61.053 63.158 13.59 0.00 0.00 4.41
354 355 1.139947 GTACTCTCGAGGGCTGCAC 59.860 63.158 13.59 1.46 0.00 4.57
355 356 1.000771 TACTCTCGAGGGCTGCACT 60.001 57.895 13.59 2.85 0.00 4.40
356 357 1.315981 TACTCTCGAGGGCTGCACTG 61.316 60.000 10.26 1.57 0.00 3.66
357 358 2.601666 TCTCGAGGGCTGCACTGT 60.602 61.111 10.26 0.00 0.00 3.55
358 359 1.304134 TCTCGAGGGCTGCACTGTA 60.304 57.895 10.26 0.00 0.00 2.74
359 360 1.140589 CTCGAGGGCTGCACTGTAG 59.859 63.158 10.26 1.86 0.00 2.74
360 361 1.304134 TCGAGGGCTGCACTGTAGA 60.304 57.895 10.26 2.82 0.00 2.59
361 362 1.153745 CGAGGGCTGCACTGTAGAC 60.154 63.158 10.26 0.00 0.00 2.59
362 363 1.153745 GAGGGCTGCACTGTAGACG 60.154 63.158 10.26 0.00 0.00 4.18
363 364 1.595993 GAGGGCTGCACTGTAGACGA 61.596 60.000 10.26 0.00 0.00 4.20
364 365 1.185618 AGGGCTGCACTGTAGACGAA 61.186 55.000 2.20 0.00 0.00 3.85
365 366 0.737715 GGGCTGCACTGTAGACGAAG 60.738 60.000 0.50 0.00 0.00 3.79
366 367 0.737715 GGCTGCACTGTAGACGAAGG 60.738 60.000 0.50 0.00 0.00 3.46
367 368 0.038159 GCTGCACTGTAGACGAAGGT 60.038 55.000 0.00 0.00 0.00 3.50
368 369 1.201647 GCTGCACTGTAGACGAAGGTA 59.798 52.381 0.00 0.00 0.00 3.08
369 370 2.732597 GCTGCACTGTAGACGAAGGTAG 60.733 54.545 0.00 0.00 0.00 3.18
370 371 2.747989 CTGCACTGTAGACGAAGGTAGA 59.252 50.000 0.00 0.00 0.00 2.59
371 372 2.747989 TGCACTGTAGACGAAGGTAGAG 59.252 50.000 0.00 0.00 0.00 2.43
372 373 2.097791 GCACTGTAGACGAAGGTAGAGG 59.902 54.545 0.00 0.00 0.00 3.69
373 374 3.607741 CACTGTAGACGAAGGTAGAGGA 58.392 50.000 0.00 0.00 0.00 3.71
374 375 3.623960 CACTGTAGACGAAGGTAGAGGAG 59.376 52.174 0.00 0.00 0.00 3.69
375 376 3.207778 CTGTAGACGAAGGTAGAGGAGG 58.792 54.545 0.00 0.00 0.00 4.30
376 377 2.842496 TGTAGACGAAGGTAGAGGAGGA 59.158 50.000 0.00 0.00 0.00 3.71
377 378 2.721425 AGACGAAGGTAGAGGAGGAG 57.279 55.000 0.00 0.00 0.00 3.69
378 379 2.198336 AGACGAAGGTAGAGGAGGAGA 58.802 52.381 0.00 0.00 0.00 3.71
379 380 2.171870 AGACGAAGGTAGAGGAGGAGAG 59.828 54.545 0.00 0.00 0.00 3.20
380 381 1.213430 ACGAAGGTAGAGGAGGAGAGG 59.787 57.143 0.00 0.00 0.00 3.69
381 382 1.699730 GAAGGTAGAGGAGGAGAGGC 58.300 60.000 0.00 0.00 0.00 4.70
382 383 0.106419 AAGGTAGAGGAGGAGAGGCG 60.106 60.000 0.00 0.00 0.00 5.52
383 384 0.989212 AGGTAGAGGAGGAGAGGCGA 60.989 60.000 0.00 0.00 0.00 5.54
384 385 0.820482 GGTAGAGGAGGAGAGGCGAC 60.820 65.000 0.00 0.00 0.00 5.19
385 386 0.107116 GTAGAGGAGGAGAGGCGACA 60.107 60.000 0.00 0.00 0.00 4.35
386 387 0.107116 TAGAGGAGGAGAGGCGACAC 60.107 60.000 0.00 0.00 0.00 3.67
387 388 2.752238 AGGAGGAGAGGCGACACG 60.752 66.667 0.00 0.00 0.00 4.49
388 389 3.827898 GGAGGAGAGGCGACACGG 61.828 72.222 0.00 0.00 0.00 4.94
389 390 3.063084 GAGGAGAGGCGACACGGT 61.063 66.667 0.00 0.00 0.00 4.83
390 391 3.343788 GAGGAGAGGCGACACGGTG 62.344 68.421 6.58 6.58 0.00 4.94
391 392 3.371063 GGAGAGGCGACACGGTGA 61.371 66.667 16.29 0.00 0.00 4.02
392 393 2.179517 GAGAGGCGACACGGTGAG 59.820 66.667 16.29 9.40 0.00 3.51
393 394 3.343788 GAGAGGCGACACGGTGAGG 62.344 68.421 16.29 6.97 0.00 3.86
394 395 3.371063 GAGGCGACACGGTGAGGA 61.371 66.667 16.29 0.00 0.00 3.71
395 396 2.680352 AGGCGACACGGTGAGGAT 60.680 61.111 16.29 0.00 0.00 3.24
396 397 2.509336 GGCGACACGGTGAGGATG 60.509 66.667 16.29 0.68 0.00 3.51
397 398 2.571757 GCGACACGGTGAGGATGA 59.428 61.111 16.29 0.00 0.00 2.92
398 399 1.080093 GCGACACGGTGAGGATGAA 60.080 57.895 16.29 0.00 0.00 2.57
399 400 1.078759 GCGACACGGTGAGGATGAAG 61.079 60.000 16.29 0.00 0.00 3.02
400 401 0.243907 CGACACGGTGAGGATGAAGT 59.756 55.000 16.29 0.00 0.00 3.01
401 402 1.714794 GACACGGTGAGGATGAAGTG 58.285 55.000 16.29 0.00 35.89 3.16
402 403 0.321671 ACACGGTGAGGATGAAGTGG 59.678 55.000 16.29 0.00 34.28 4.00
403 404 0.608130 CACGGTGAGGATGAAGTGGA 59.392 55.000 0.74 0.00 0.00 4.02
404 405 0.898320 ACGGTGAGGATGAAGTGGAG 59.102 55.000 0.00 0.00 0.00 3.86
405 406 0.176680 CGGTGAGGATGAAGTGGAGG 59.823 60.000 0.00 0.00 0.00 4.30
406 407 0.543749 GGTGAGGATGAAGTGGAGGG 59.456 60.000 0.00 0.00 0.00 4.30
407 408 0.543749 GTGAGGATGAAGTGGAGGGG 59.456 60.000 0.00 0.00 0.00 4.79
408 409 0.417437 TGAGGATGAAGTGGAGGGGA 59.583 55.000 0.00 0.00 0.00 4.81
409 410 1.127343 GAGGATGAAGTGGAGGGGAG 58.873 60.000 0.00 0.00 0.00 4.30
410 411 0.327000 AGGATGAAGTGGAGGGGAGG 60.327 60.000 0.00 0.00 0.00 4.30
411 412 0.326618 GGATGAAGTGGAGGGGAGGA 60.327 60.000 0.00 0.00 0.00 3.71
412 413 1.127343 GATGAAGTGGAGGGGAGGAG 58.873 60.000 0.00 0.00 0.00 3.69
413 414 0.327000 ATGAAGTGGAGGGGAGGAGG 60.327 60.000 0.00 0.00 0.00 4.30
414 415 1.081277 GAAGTGGAGGGGAGGAGGT 59.919 63.158 0.00 0.00 0.00 3.85
415 416 1.229658 AAGTGGAGGGGAGGAGGTG 60.230 63.158 0.00 0.00 0.00 4.00
416 417 3.403558 GTGGAGGGGAGGAGGTGC 61.404 72.222 0.00 0.00 0.00 5.01
418 419 4.779733 GGAGGGGAGGAGGTGCGA 62.780 72.222 0.00 0.00 0.00 5.10
419 420 3.462678 GAGGGGAGGAGGTGCGAC 61.463 72.222 0.00 0.00 0.00 5.19
420 421 4.316823 AGGGGAGGAGGTGCGACA 62.317 66.667 0.00 0.00 0.00 4.35
421 422 3.319198 GGGGAGGAGGTGCGACAA 61.319 66.667 0.00 0.00 0.00 3.18
422 423 2.670148 GGGGAGGAGGTGCGACAAT 61.670 63.158 0.00 0.00 0.00 2.71
423 424 1.450312 GGGAGGAGGTGCGACAATG 60.450 63.158 0.00 0.00 0.00 2.82
424 425 2.109126 GGAGGAGGTGCGACAATGC 61.109 63.158 0.00 0.00 0.00 3.56
425 426 1.078848 GAGGAGGTGCGACAATGCT 60.079 57.895 0.00 0.00 35.36 3.79
426 427 1.364626 GAGGAGGTGCGACAATGCTG 61.365 60.000 0.00 0.00 35.36 4.41
427 428 2.401766 GGAGGTGCGACAATGCTGG 61.402 63.158 0.00 0.00 35.36 4.85
428 429 1.375908 GAGGTGCGACAATGCTGGA 60.376 57.895 0.00 0.00 35.36 3.86
429 430 0.955428 GAGGTGCGACAATGCTGGAA 60.955 55.000 0.00 0.00 35.36 3.53
430 431 0.537143 AGGTGCGACAATGCTGGAAA 60.537 50.000 0.00 0.00 35.36 3.13
431 432 0.527565 GGTGCGACAATGCTGGAAAT 59.472 50.000 0.00 0.00 35.36 2.17
432 433 1.067635 GGTGCGACAATGCTGGAAATT 60.068 47.619 0.00 0.00 35.36 1.82
433 434 2.610232 GGTGCGACAATGCTGGAAATTT 60.610 45.455 0.00 0.00 35.36 1.82
434 435 3.059166 GTGCGACAATGCTGGAAATTTT 58.941 40.909 0.00 0.00 35.36 1.82
435 436 3.494251 GTGCGACAATGCTGGAAATTTTT 59.506 39.130 0.00 0.00 35.36 1.94
454 455 3.357166 TTTGGGTGAAAATCGAAACGG 57.643 42.857 0.00 0.00 0.00 4.44
455 456 1.240256 TGGGTGAAAATCGAAACGGG 58.760 50.000 0.00 0.00 0.00 5.28
456 457 1.202782 TGGGTGAAAATCGAAACGGGA 60.203 47.619 0.00 0.00 0.00 5.14
457 458 2.089201 GGGTGAAAATCGAAACGGGAT 58.911 47.619 0.00 0.00 0.00 3.85
458 459 3.272581 GGGTGAAAATCGAAACGGGATA 58.727 45.455 0.00 0.00 0.00 2.59
459 460 3.311596 GGGTGAAAATCGAAACGGGATAG 59.688 47.826 0.00 0.00 0.00 2.08
460 461 3.311596 GGTGAAAATCGAAACGGGATAGG 59.688 47.826 0.00 0.00 0.00 2.57
461 462 3.311596 GTGAAAATCGAAACGGGATAGGG 59.688 47.826 0.00 0.00 0.00 3.53
462 463 3.198200 TGAAAATCGAAACGGGATAGGGA 59.802 43.478 0.00 0.00 0.00 4.20
463 464 3.918294 AAATCGAAACGGGATAGGGAA 57.082 42.857 0.00 0.00 0.00 3.97
464 465 3.470645 AATCGAAACGGGATAGGGAAG 57.529 47.619 0.00 0.00 0.00 3.46
465 466 2.148446 TCGAAACGGGATAGGGAAGA 57.852 50.000 0.00 0.00 0.00 2.87
466 467 2.029623 TCGAAACGGGATAGGGAAGAG 58.970 52.381 0.00 0.00 0.00 2.85
467 468 1.068741 CGAAACGGGATAGGGAAGAGG 59.931 57.143 0.00 0.00 0.00 3.69
468 469 2.395619 GAAACGGGATAGGGAAGAGGA 58.604 52.381 0.00 0.00 0.00 3.71
469 470 2.563039 AACGGGATAGGGAAGAGGAA 57.437 50.000 0.00 0.00 0.00 3.36
470 471 2.089600 ACGGGATAGGGAAGAGGAAG 57.910 55.000 0.00 0.00 0.00 3.46
471 472 1.343069 CGGGATAGGGAAGAGGAAGG 58.657 60.000 0.00 0.00 0.00 3.46
472 473 1.413227 CGGGATAGGGAAGAGGAAGGT 60.413 57.143 0.00 0.00 0.00 3.50
473 474 2.050918 GGGATAGGGAAGAGGAAGGTG 58.949 57.143 0.00 0.00 0.00 4.00
474 475 1.418264 GGATAGGGAAGAGGAAGGTGC 59.582 57.143 0.00 0.00 0.00 5.01
475 476 2.119495 GATAGGGAAGAGGAAGGTGCA 58.881 52.381 0.00 0.00 0.00 4.57
476 477 1.573108 TAGGGAAGAGGAAGGTGCAG 58.427 55.000 0.00 0.00 0.00 4.41
477 478 1.204113 AGGGAAGAGGAAGGTGCAGG 61.204 60.000 0.00 0.00 0.00 4.85
478 479 1.301293 GGAAGAGGAAGGTGCAGGG 59.699 63.158 0.00 0.00 0.00 4.45
479 480 1.377856 GAAGAGGAAGGTGCAGGGC 60.378 63.158 0.00 0.00 0.00 5.19
480 481 1.846712 GAAGAGGAAGGTGCAGGGCT 61.847 60.000 0.00 0.00 0.00 5.19
481 482 2.045536 GAGGAAGGTGCAGGGCTG 60.046 66.667 0.00 0.00 0.00 4.85
482 483 3.635268 GAGGAAGGTGCAGGGCTGG 62.635 68.421 0.00 0.00 0.00 4.85
483 484 4.748144 GGAAGGTGCAGGGCTGGG 62.748 72.222 0.00 0.00 0.00 4.45
484 485 3.650950 GAAGGTGCAGGGCTGGGA 61.651 66.667 0.00 0.00 0.00 4.37
485 486 3.185203 AAGGTGCAGGGCTGGGAA 61.185 61.111 0.00 0.00 0.00 3.97
486 487 2.713531 GAAGGTGCAGGGCTGGGAAA 62.714 60.000 0.00 0.00 0.00 3.13
487 488 2.203625 GGTGCAGGGCTGGGAAAA 60.204 61.111 0.00 0.00 0.00 2.29
488 489 1.610379 GGTGCAGGGCTGGGAAAAT 60.610 57.895 0.00 0.00 0.00 1.82
489 490 1.194121 GGTGCAGGGCTGGGAAAATT 61.194 55.000 0.00 0.00 0.00 1.82
490 491 0.686789 GTGCAGGGCTGGGAAAATTT 59.313 50.000 0.00 0.00 0.00 1.82
491 492 1.072173 GTGCAGGGCTGGGAAAATTTT 59.928 47.619 2.28 2.28 0.00 1.82
492 493 1.072015 TGCAGGGCTGGGAAAATTTTG 59.928 47.619 8.47 0.00 0.00 2.44
493 494 1.347378 GCAGGGCTGGGAAAATTTTGA 59.653 47.619 8.47 0.00 0.00 2.69
494 495 2.224499 GCAGGGCTGGGAAAATTTTGAA 60.224 45.455 8.47 0.00 0.00 2.69
495 496 3.559811 GCAGGGCTGGGAAAATTTTGAAT 60.560 43.478 8.47 0.00 0.00 2.57
496 497 4.004982 CAGGGCTGGGAAAATTTTGAATG 58.995 43.478 8.47 0.00 0.00 2.67
497 498 3.909364 AGGGCTGGGAAAATTTTGAATGA 59.091 39.130 8.47 0.00 0.00 2.57
498 499 4.350520 AGGGCTGGGAAAATTTTGAATGAA 59.649 37.500 8.47 0.00 0.00 2.57
499 500 5.069318 GGGCTGGGAAAATTTTGAATGAAA 58.931 37.500 8.47 0.00 0.00 2.69
500 501 5.534278 GGGCTGGGAAAATTTTGAATGAAAA 59.466 36.000 8.47 0.00 37.93 2.29
501 502 6.209192 GGGCTGGGAAAATTTTGAATGAAAAT 59.791 34.615 8.47 0.00 44.66 1.82
502 503 7.307694 GGCTGGGAAAATTTTGAATGAAAATC 58.692 34.615 8.47 0.00 42.41 2.17
503 504 7.017055 GCTGGGAAAATTTTGAATGAAAATCG 58.983 34.615 8.47 0.00 42.41 3.34
504 505 7.095271 GCTGGGAAAATTTTGAATGAAAATCGA 60.095 33.333 8.47 0.00 42.41 3.59
505 506 8.668510 TGGGAAAATTTTGAATGAAAATCGAA 57.331 26.923 8.47 0.00 42.41 3.71
506 507 9.113838 TGGGAAAATTTTGAATGAAAATCGAAA 57.886 25.926 8.47 0.00 42.41 3.46
507 508 9.381027 GGGAAAATTTTGAATGAAAATCGAAAC 57.619 29.630 8.47 0.00 42.41 2.78
508 509 9.091255 GGAAAATTTTGAATGAAAATCGAAACG 57.909 29.630 8.47 0.00 42.41 3.60
509 510 8.986039 AAAATTTTGAATGAAAATCGAAACGG 57.014 26.923 1.75 0.00 42.41 4.44
510 511 6.704512 ATTTTGAATGAAAATCGAAACGGG 57.295 33.333 0.00 0.00 39.65 5.28
511 512 5.440234 TTTGAATGAAAATCGAAACGGGA 57.560 34.783 0.00 0.00 0.00 5.14
512 513 5.637006 TTGAATGAAAATCGAAACGGGAT 57.363 34.783 0.00 0.00 0.00 3.85
513 514 6.745159 TTGAATGAAAATCGAAACGGGATA 57.255 33.333 0.00 0.00 0.00 2.59
514 515 6.358118 TGAATGAAAATCGAAACGGGATAG 57.642 37.500 0.00 0.00 0.00 2.08
515 516 5.295787 TGAATGAAAATCGAAACGGGATAGG 59.704 40.000 0.00 0.00 0.00 2.57
516 517 3.537580 TGAAAATCGAAACGGGATAGGG 58.462 45.455 0.00 0.00 0.00 3.53
517 518 2.632987 AAATCGAAACGGGATAGGGG 57.367 50.000 0.00 0.00 0.00 4.79
518 519 1.797320 AATCGAAACGGGATAGGGGA 58.203 50.000 0.00 0.00 0.00 4.81
519 520 1.339097 ATCGAAACGGGATAGGGGAG 58.661 55.000 0.00 0.00 0.00 4.30
520 521 0.259647 TCGAAACGGGATAGGGGAGA 59.740 55.000 0.00 0.00 0.00 3.71
521 522 0.674534 CGAAACGGGATAGGGGAGAG 59.325 60.000 0.00 0.00 0.00 3.20
522 523 1.049402 GAAACGGGATAGGGGAGAGG 58.951 60.000 0.00 0.00 0.00 3.69
523 524 0.640495 AAACGGGATAGGGGAGAGGA 59.360 55.000 0.00 0.00 0.00 3.71
524 525 0.640495 AACGGGATAGGGGAGAGGAA 59.360 55.000 0.00 0.00 0.00 3.36
525 526 0.188834 ACGGGATAGGGGAGAGGAAG 59.811 60.000 0.00 0.00 0.00 3.46
526 527 0.543174 CGGGATAGGGGAGAGGAAGG 60.543 65.000 0.00 0.00 0.00 3.46
527 528 0.568697 GGGATAGGGGAGAGGAAGGT 59.431 60.000 0.00 0.00 0.00 3.50
528 529 1.723288 GGATAGGGGAGAGGAAGGTG 58.277 60.000 0.00 0.00 0.00 4.00
529 530 1.052617 GATAGGGGAGAGGAAGGTGC 58.947 60.000 0.00 0.00 0.00 5.01
530 531 0.760945 ATAGGGGAGAGGAAGGTGCG 60.761 60.000 0.00 0.00 0.00 5.34
531 532 2.873557 TAGGGGAGAGGAAGGTGCGG 62.874 65.000 0.00 0.00 0.00 5.69
532 533 4.475135 GGGAGAGGAAGGTGCGGC 62.475 72.222 0.00 0.00 0.00 6.53
533 534 4.821589 GGAGAGGAAGGTGCGGCG 62.822 72.222 0.51 0.51 0.00 6.46
534 535 4.821589 GAGAGGAAGGTGCGGCGG 62.822 72.222 9.78 0.00 0.00 6.13
539 540 4.388499 GAAGGTGCGGCGGGAAGA 62.388 66.667 9.78 0.00 0.00 2.87
540 541 4.394712 AAGGTGCGGCGGGAAGAG 62.395 66.667 9.78 0.00 0.00 2.85
542 543 4.388499 GGTGCGGCGGGAAGAGAA 62.388 66.667 9.78 0.00 0.00 2.87
543 544 2.358247 GTGCGGCGGGAAGAGAAA 60.358 61.111 9.78 0.00 0.00 2.52
544 545 2.047274 TGCGGCGGGAAGAGAAAG 60.047 61.111 9.78 0.00 0.00 2.62
545 546 2.264794 GCGGCGGGAAGAGAAAGA 59.735 61.111 9.78 0.00 0.00 2.52
546 547 1.375523 GCGGCGGGAAGAGAAAGAA 60.376 57.895 9.78 0.00 0.00 2.52
547 548 0.953960 GCGGCGGGAAGAGAAAGAAA 60.954 55.000 9.78 0.00 0.00 2.52
548 549 0.796927 CGGCGGGAAGAGAAAGAAAC 59.203 55.000 0.00 0.00 0.00 2.78
549 550 1.166129 GGCGGGAAGAGAAAGAAACC 58.834 55.000 0.00 0.00 0.00 3.27
550 551 0.796927 GCGGGAAGAGAAAGAAACCG 59.203 55.000 0.00 0.00 42.47 4.44
551 552 1.607251 GCGGGAAGAGAAAGAAACCGA 60.607 52.381 0.00 0.00 42.19 4.69
552 553 2.338500 CGGGAAGAGAAAGAAACCGAG 58.662 52.381 0.00 0.00 42.19 4.63
553 554 2.029290 CGGGAAGAGAAAGAAACCGAGA 60.029 50.000 0.00 0.00 42.19 4.04
554 555 3.591023 GGGAAGAGAAAGAAACCGAGAG 58.409 50.000 0.00 0.00 0.00 3.20
583 584 4.928140 GGGACCCGGGGCGAGATA 62.928 72.222 27.92 0.00 0.00 1.98
584 585 2.603776 GGACCCGGGGCGAGATAT 60.604 66.667 27.92 0.00 0.00 1.63
585 586 2.214920 GGACCCGGGGCGAGATATT 61.215 63.158 27.92 0.00 0.00 1.28
586 587 1.752833 GACCCGGGGCGAGATATTT 59.247 57.895 27.92 0.00 0.00 1.40
587 588 0.320508 GACCCGGGGCGAGATATTTC 60.321 60.000 27.92 4.86 0.00 2.17
588 589 0.763223 ACCCGGGGCGAGATATTTCT 60.763 55.000 27.92 0.00 33.88 2.52
589 590 0.320771 CCCGGGGCGAGATATTTCTG 60.321 60.000 14.71 0.00 30.30 3.02
590 591 0.320771 CCGGGGCGAGATATTTCTGG 60.321 60.000 0.00 0.00 30.30 3.86
591 592 0.679505 CGGGGCGAGATATTTCTGGA 59.320 55.000 0.00 0.00 29.74 3.86
592 593 1.070134 CGGGGCGAGATATTTCTGGAA 59.930 52.381 0.00 0.00 29.74 3.53
593 594 2.772287 GGGGCGAGATATTTCTGGAAG 58.228 52.381 0.00 0.00 29.74 3.46
594 595 2.104963 GGGGCGAGATATTTCTGGAAGT 59.895 50.000 0.00 0.00 33.76 3.01
595 596 3.134458 GGGCGAGATATTTCTGGAAGTG 58.866 50.000 0.00 0.00 33.76 3.16
596 597 3.181465 GGGCGAGATATTTCTGGAAGTGA 60.181 47.826 0.00 0.00 33.76 3.41
597 598 4.442706 GGCGAGATATTTCTGGAAGTGAA 58.557 43.478 0.00 0.00 33.76 3.18
598 599 4.876107 GGCGAGATATTTCTGGAAGTGAAA 59.124 41.667 0.00 0.00 37.74 2.69
599 600 5.529060 GGCGAGATATTTCTGGAAGTGAAAT 59.471 40.000 0.00 6.87 43.74 2.17
600 601 6.038714 GGCGAGATATTTCTGGAAGTGAAATT 59.961 38.462 6.96 0.00 42.16 1.82
601 602 6.909357 GCGAGATATTTCTGGAAGTGAAATTG 59.091 38.462 6.96 0.00 42.16 2.32
602 603 7.201644 GCGAGATATTTCTGGAAGTGAAATTGA 60.202 37.037 6.96 0.00 42.16 2.57
603 604 8.119226 CGAGATATTTCTGGAAGTGAAATTGAC 58.881 37.037 6.96 1.51 42.16 3.18
604 605 8.286191 AGATATTTCTGGAAGTGAAATTGACC 57.714 34.615 6.96 0.00 42.16 4.02
605 606 7.890127 AGATATTTCTGGAAGTGAAATTGACCA 59.110 33.333 6.96 0.00 42.16 4.02
606 607 6.923199 ATTTCTGGAAGTGAAATTGACCAT 57.077 33.333 0.00 0.00 40.07 3.55
607 608 6.729690 TTTCTGGAAGTGAAATTGACCATT 57.270 33.333 0.00 0.00 33.76 3.16
608 609 5.710513 TCTGGAAGTGAAATTGACCATTG 57.289 39.130 0.00 0.00 33.76 2.82
609 610 5.139727 TCTGGAAGTGAAATTGACCATTGT 58.860 37.500 0.00 0.00 33.76 2.71
610 611 6.303054 TCTGGAAGTGAAATTGACCATTGTA 58.697 36.000 0.00 0.00 33.76 2.41
611 612 6.430925 TCTGGAAGTGAAATTGACCATTGTAG 59.569 38.462 0.00 0.00 33.76 2.74
612 613 6.068010 TGGAAGTGAAATTGACCATTGTAGT 58.932 36.000 0.00 0.00 0.00 2.73
613 614 6.549364 TGGAAGTGAAATTGACCATTGTAGTT 59.451 34.615 0.00 0.00 0.00 2.24
614 615 6.863126 GGAAGTGAAATTGACCATTGTAGTTG 59.137 38.462 0.00 0.00 0.00 3.16
615 616 6.959639 AGTGAAATTGACCATTGTAGTTGT 57.040 33.333 0.00 0.00 0.00 3.32
616 617 8.458573 AAGTGAAATTGACCATTGTAGTTGTA 57.541 30.769 0.00 0.00 0.00 2.41
617 618 8.458573 AGTGAAATTGACCATTGTAGTTGTAA 57.541 30.769 0.00 0.00 0.00 2.41
618 619 8.567948 AGTGAAATTGACCATTGTAGTTGTAAG 58.432 33.333 0.00 0.00 0.00 2.34
619 620 8.564574 GTGAAATTGACCATTGTAGTTGTAAGA 58.435 33.333 0.00 0.00 0.00 2.10
620 621 8.564574 TGAAATTGACCATTGTAGTTGTAAGAC 58.435 33.333 0.00 0.00 0.00 3.01
621 622 8.458573 AAATTGACCATTGTAGTTGTAAGACA 57.541 30.769 0.00 0.00 0.00 3.41
622 623 8.635765 AATTGACCATTGTAGTTGTAAGACAT 57.364 30.769 0.00 0.00 0.00 3.06
623 624 7.667043 TTGACCATTGTAGTTGTAAGACATC 57.333 36.000 0.00 0.00 0.00 3.06
624 625 6.170506 TGACCATTGTAGTTGTAAGACATCC 58.829 40.000 0.00 0.00 0.00 3.51
625 626 5.497474 ACCATTGTAGTTGTAAGACATCCC 58.503 41.667 0.00 0.00 0.00 3.85
626 627 4.881850 CCATTGTAGTTGTAAGACATCCCC 59.118 45.833 0.00 0.00 0.00 4.81
627 628 5.496556 CATTGTAGTTGTAAGACATCCCCA 58.503 41.667 0.00 0.00 0.00 4.96
628 629 4.546829 TGTAGTTGTAAGACATCCCCAC 57.453 45.455 0.00 0.00 0.00 4.61
629 630 2.762535 AGTTGTAAGACATCCCCACG 57.237 50.000 0.00 0.00 0.00 4.94
630 631 1.975680 AGTTGTAAGACATCCCCACGT 59.024 47.619 0.00 0.00 0.00 4.49
631 632 3.167485 AGTTGTAAGACATCCCCACGTA 58.833 45.455 0.00 0.00 0.00 3.57
632 633 3.579586 AGTTGTAAGACATCCCCACGTAA 59.420 43.478 0.00 0.00 0.00 3.18
633 634 4.224370 AGTTGTAAGACATCCCCACGTAAT 59.776 41.667 0.00 0.00 0.00 1.89
634 635 4.829872 TGTAAGACATCCCCACGTAATT 57.170 40.909 0.00 0.00 0.00 1.40
635 636 5.168647 TGTAAGACATCCCCACGTAATTT 57.831 39.130 0.00 0.00 0.00 1.82
636 637 4.938832 TGTAAGACATCCCCACGTAATTTG 59.061 41.667 0.00 0.00 0.00 2.32
637 638 2.365582 AGACATCCCCACGTAATTTGC 58.634 47.619 0.00 0.00 0.00 3.68
638 639 1.063469 GACATCCCCACGTAATTTGCG 59.937 52.381 5.30 5.30 0.00 4.85
639 640 1.091537 CATCCCCACGTAATTTGCGT 58.908 50.000 6.71 6.71 43.90 5.24
640 641 2.281517 CATCCCCACGTAATTTGCGTA 58.718 47.619 12.14 0.00 40.90 4.42
641 642 1.724429 TCCCCACGTAATTTGCGTAC 58.276 50.000 12.14 0.00 40.90 3.67
642 643 1.001746 TCCCCACGTAATTTGCGTACA 59.998 47.619 12.14 0.00 40.90 2.90
643 644 2.011222 CCCCACGTAATTTGCGTACAT 58.989 47.619 12.14 0.00 40.90 2.29
644 645 2.223157 CCCCACGTAATTTGCGTACATG 60.223 50.000 12.14 0.75 40.90 3.21
645 646 2.417239 CCCACGTAATTTGCGTACATGT 59.583 45.455 12.14 2.69 40.90 3.21
646 647 3.412654 CCACGTAATTTGCGTACATGTG 58.587 45.455 12.14 0.00 40.90 3.21
647 648 3.120477 CCACGTAATTTGCGTACATGTGT 60.120 43.478 12.14 0.00 40.90 3.72
648 649 4.079028 CACGTAATTTGCGTACATGTGTC 58.921 43.478 12.14 0.49 40.90 3.67
649 650 3.741856 ACGTAATTTGCGTACATGTGTCA 59.258 39.130 10.88 0.28 41.06 3.58
650 651 4.211584 ACGTAATTTGCGTACATGTGTCAA 59.788 37.500 10.88 6.86 41.06 3.18
651 652 5.106869 ACGTAATTTGCGTACATGTGTCAAT 60.107 36.000 10.88 0.00 41.06 2.57
652 653 5.792962 CGTAATTTGCGTACATGTGTCAATT 59.207 36.000 9.11 8.25 0.00 2.32
653 654 6.236915 CGTAATTTGCGTACATGTGTCAATTG 60.237 38.462 9.11 0.00 0.00 2.32
654 655 3.550950 TTGCGTACATGTGTCAATTGG 57.449 42.857 9.11 0.00 0.00 3.16
655 656 2.772287 TGCGTACATGTGTCAATTGGA 58.228 42.857 9.11 0.00 0.00 3.53
656 657 2.741517 TGCGTACATGTGTCAATTGGAG 59.258 45.455 9.11 0.00 0.00 3.86
657 658 3.000041 GCGTACATGTGTCAATTGGAGA 59.000 45.455 9.11 0.00 0.00 3.71
658 659 3.623060 GCGTACATGTGTCAATTGGAGAT 59.377 43.478 9.11 0.00 0.00 2.75
659 660 4.494690 GCGTACATGTGTCAATTGGAGATG 60.495 45.833 9.11 9.33 0.00 2.90
660 661 4.869861 CGTACATGTGTCAATTGGAGATGA 59.130 41.667 9.11 4.32 0.00 2.92
661 662 5.006068 CGTACATGTGTCAATTGGAGATGAG 59.994 44.000 9.11 8.21 0.00 2.90
662 663 4.267536 ACATGTGTCAATTGGAGATGAGG 58.732 43.478 17.03 1.70 0.00 3.86
663 664 2.715046 TGTGTCAATTGGAGATGAGGC 58.285 47.619 5.42 0.00 0.00 4.70
664 665 2.040145 TGTGTCAATTGGAGATGAGGCA 59.960 45.455 5.42 0.00 0.00 4.75
665 666 3.285484 GTGTCAATTGGAGATGAGGCAT 58.715 45.455 5.42 0.00 0.00 4.40
666 667 3.314635 GTGTCAATTGGAGATGAGGCATC 59.685 47.826 5.42 0.00 40.80 3.91
667 668 2.547211 GTCAATTGGAGATGAGGCATCG 59.453 50.000 5.42 0.00 44.67 3.84
668 669 1.878088 CAATTGGAGATGAGGCATCGG 59.122 52.381 0.00 0.00 44.67 4.18
669 670 0.250640 ATTGGAGATGAGGCATCGGC 60.251 55.000 0.00 0.00 44.67 5.54
670 671 1.340399 TTGGAGATGAGGCATCGGCT 61.340 55.000 0.00 0.00 44.67 5.52
671 672 0.469892 TGGAGATGAGGCATCGGCTA 60.470 55.000 0.00 0.00 44.67 3.93
672 673 0.037790 GGAGATGAGGCATCGGCTAC 60.038 60.000 0.00 0.00 44.67 3.58
673 674 0.676184 GAGATGAGGCATCGGCTACA 59.324 55.000 0.00 0.00 44.67 2.74
674 675 1.069204 GAGATGAGGCATCGGCTACAA 59.931 52.381 0.00 0.00 44.67 2.41
675 676 1.696336 AGATGAGGCATCGGCTACAAT 59.304 47.619 0.00 0.00 44.67 2.71
676 677 1.802960 GATGAGGCATCGGCTACAATG 59.197 52.381 0.00 0.00 38.98 2.82
677 678 0.541392 TGAGGCATCGGCTACAATGT 59.459 50.000 0.00 0.00 38.98 2.71
678 679 0.940126 GAGGCATCGGCTACAATGTG 59.060 55.000 0.00 0.00 38.98 3.21
679 680 0.541392 AGGCATCGGCTACAATGTGA 59.459 50.000 0.00 0.00 40.87 3.58
680 681 1.065491 AGGCATCGGCTACAATGTGAA 60.065 47.619 0.00 0.00 40.87 3.18
681 682 1.331756 GGCATCGGCTACAATGTGAAG 59.668 52.381 0.00 0.00 40.87 3.02
682 683 1.268234 GCATCGGCTACAATGTGAAGC 60.268 52.381 0.00 0.00 36.96 3.86
683 684 1.004610 CATCGGCTACAATGTGAAGCG 60.005 52.381 0.00 0.00 37.11 4.68
684 685 0.037697 TCGGCTACAATGTGAAGCGT 60.038 50.000 0.00 0.00 37.11 5.07
685 686 1.202817 TCGGCTACAATGTGAAGCGTA 59.797 47.619 0.00 0.00 37.11 4.42
686 687 2.159156 TCGGCTACAATGTGAAGCGTAT 60.159 45.455 0.00 0.00 37.11 3.06
687 688 2.218759 CGGCTACAATGTGAAGCGTATC 59.781 50.000 0.00 0.00 37.11 2.24
688 689 3.458189 GGCTACAATGTGAAGCGTATCT 58.542 45.455 0.00 0.00 37.11 1.98
689 690 3.246226 GGCTACAATGTGAAGCGTATCTG 59.754 47.826 0.00 0.00 37.11 2.90
690 691 4.112634 GCTACAATGTGAAGCGTATCTGA 58.887 43.478 0.00 0.00 0.00 3.27
691 692 4.747108 GCTACAATGTGAAGCGTATCTGAT 59.253 41.667 0.00 0.00 0.00 2.90
692 693 5.332883 GCTACAATGTGAAGCGTATCTGATG 60.333 44.000 0.00 0.00 0.00 3.07
693 694 4.507710 ACAATGTGAAGCGTATCTGATGT 58.492 39.130 0.00 0.00 0.00 3.06
694 695 4.330894 ACAATGTGAAGCGTATCTGATGTG 59.669 41.667 0.00 0.00 0.00 3.21
695 696 3.866883 TGTGAAGCGTATCTGATGTGA 57.133 42.857 0.00 0.00 0.00 3.58
696 697 3.774066 TGTGAAGCGTATCTGATGTGAG 58.226 45.455 0.00 0.00 0.00 3.51
697 698 2.537625 GTGAAGCGTATCTGATGTGAGC 59.462 50.000 0.00 0.89 0.00 4.26
698 699 2.428530 TGAAGCGTATCTGATGTGAGCT 59.571 45.455 0.00 3.16 34.70 4.09
699 700 3.632145 TGAAGCGTATCTGATGTGAGCTA 59.368 43.478 0.00 0.00 32.75 3.32
700 701 3.913548 AGCGTATCTGATGTGAGCTAG 57.086 47.619 0.00 0.00 0.00 3.42
701 702 2.030363 AGCGTATCTGATGTGAGCTAGC 60.030 50.000 6.62 6.62 0.00 3.42
702 703 2.030363 GCGTATCTGATGTGAGCTAGCT 60.030 50.000 19.45 19.45 0.00 3.32
703 704 3.551863 GCGTATCTGATGTGAGCTAGCTT 60.552 47.826 20.42 1.67 0.00 3.74
704 705 4.320567 GCGTATCTGATGTGAGCTAGCTTA 60.321 45.833 20.42 12.72 0.00 3.09
705 706 5.389778 CGTATCTGATGTGAGCTAGCTTAG 58.610 45.833 20.42 10.53 0.00 2.18
718 719 4.760878 GCTAGCTTAGCCACTTTAAGTCT 58.239 43.478 7.70 0.00 45.95 3.24
719 720 5.179533 GCTAGCTTAGCCACTTTAAGTCTT 58.820 41.667 7.70 0.00 45.95 3.01
720 721 5.064071 GCTAGCTTAGCCACTTTAAGTCTTG 59.936 44.000 7.70 0.00 45.95 3.02
721 722 4.974399 AGCTTAGCCACTTTAAGTCTTGT 58.026 39.130 0.00 0.00 32.09 3.16
722 723 5.377478 AGCTTAGCCACTTTAAGTCTTGTT 58.623 37.500 0.00 0.00 32.09 2.83
723 724 5.828328 AGCTTAGCCACTTTAAGTCTTGTTT 59.172 36.000 0.00 0.00 32.09 2.83
724 725 6.996282 AGCTTAGCCACTTTAAGTCTTGTTTA 59.004 34.615 0.00 0.00 32.09 2.01
725 726 7.665974 AGCTTAGCCACTTTAAGTCTTGTTTAT 59.334 33.333 0.00 0.00 32.09 1.40
726 727 8.943002 GCTTAGCCACTTTAAGTCTTGTTTATA 58.057 33.333 0.00 0.00 32.09 0.98
761 762 2.433239 AGATGAATACGTGGGGTGGTAC 59.567 50.000 0.00 0.00 0.00 3.34
801 802 7.877003 TGAACCTAAAATAAAATTCAGTCGCA 58.123 30.769 0.00 0.00 0.00 5.10
825 826 0.031721 CTATAGCCGGTCCCGTCAAC 59.968 60.000 1.90 0.00 37.81 3.18
826 827 0.683828 TATAGCCGGTCCCGTCAACA 60.684 55.000 1.90 0.00 37.81 3.33
827 828 2.234913 ATAGCCGGTCCCGTCAACAC 62.235 60.000 1.90 0.00 37.81 3.32
853 855 8.131100 CACACTCTTTATTTTGACAATGTCTGT 58.869 33.333 14.97 3.08 42.61 3.41
893 895 5.382618 AGCTCAATTGAATTCCTGTTGAC 57.617 39.130 9.88 6.17 0.00 3.18
919 921 7.914537 GTCAAACAGACACTCCTTATTTTTG 57.085 36.000 0.00 0.00 46.77 2.44
935 937 8.902806 CCTTATTTTTGTGGCAAGACAGATATA 58.097 33.333 0.00 0.00 0.00 0.86
966 1043 3.701542 TCATAGACACTGTCTGATCACCC 59.298 47.826 20.19 0.00 43.30 4.61
976 1053 1.156736 CTGATCACCCGTGGTTGTTC 58.843 55.000 0.00 0.00 31.02 3.18
993 1079 5.219633 GTTGTTCTTGTTGTTGTTGTCAGT 58.780 37.500 0.00 0.00 0.00 3.41
1173 1259 2.125912 CGCTCCCTGGTCAAGTCG 60.126 66.667 0.00 0.00 0.00 4.18
1212 1314 4.829518 CTCGTCATCGTCGCGGCA 62.830 66.667 12.89 0.00 38.33 5.69
1290 1392 3.376935 CTGGCCGCTCTACTGGGTG 62.377 68.421 0.00 0.00 0.00 4.61
1293 1395 4.162690 CCGCTCTACTGGGTGGCC 62.163 72.222 0.00 0.00 0.00 5.36
1426 1528 1.726533 CCTCGTCCCCTACTTCTCGC 61.727 65.000 0.00 0.00 0.00 5.03
1464 1566 2.813726 CCACCACTCCAACACCGGA 61.814 63.158 9.46 0.00 0.00 5.14
1567 1669 1.005037 GTCCGTGTGGTGCTCATCA 60.005 57.895 0.00 0.00 36.30 3.07
1569 1671 0.391528 TCCGTGTGGTGCTCATCATG 60.392 55.000 0.00 0.00 36.30 3.07
1593 1695 1.002502 GCTCACCCTTGGGTGGTAC 60.003 63.158 31.48 20.02 40.01 3.34
1741 1843 1.206578 GTGTCGTTCGCCATGTTGG 59.793 57.895 0.00 0.00 41.55 3.77
1743 1845 0.321210 TGTCGTTCGCCATGTTGGAT 60.321 50.000 0.00 0.00 40.96 3.41
1744 1846 0.802494 GTCGTTCGCCATGTTGGATT 59.198 50.000 0.00 0.00 40.96 3.01
1989 2101 3.266772 TCTTGCACCACCTATTCTCCAAT 59.733 43.478 0.00 0.00 0.00 3.16
2373 2491 0.786581 GTGTGTGCGTCTGTCATCTG 59.213 55.000 0.00 0.00 0.00 2.90
2442 2560 6.410914 CGTGTTTATGTCGGATTTTTCATAGC 59.589 38.462 0.00 0.00 0.00 2.97
2462 2580 2.622942 GCACACCAGTTCTTTTCCATGA 59.377 45.455 0.00 0.00 0.00 3.07
2470 2588 4.023707 CAGTTCTTTTCCATGACTTTCGCT 60.024 41.667 0.00 0.00 0.00 4.93
2471 2589 4.580580 AGTTCTTTTCCATGACTTTCGCTT 59.419 37.500 0.00 0.00 0.00 4.68
2472 2590 5.067805 AGTTCTTTTCCATGACTTTCGCTTT 59.932 36.000 0.00 0.00 0.00 3.51
2473 2591 5.514274 TCTTTTCCATGACTTTCGCTTTT 57.486 34.783 0.00 0.00 0.00 2.27
2474 2592 5.280945 TCTTTTCCATGACTTTCGCTTTTG 58.719 37.500 0.00 0.00 0.00 2.44
2475 2593 2.704725 TCCATGACTTTCGCTTTTGC 57.295 45.000 0.00 0.00 43.23 3.68
2497 2615 2.050168 CGCACCATGTGGCACAAC 60.050 61.111 25.95 10.72 44.16 3.32
2499 2617 1.667151 GCACCATGTGGCACAACAT 59.333 52.632 25.95 9.75 44.16 2.71
2500 2618 0.887247 GCACCATGTGGCACAACATA 59.113 50.000 25.95 0.00 44.16 2.29
2501 2619 1.477700 GCACCATGTGGCACAACATAT 59.522 47.619 25.95 4.35 44.16 1.78
2502 2620 2.736081 GCACCATGTGGCACAACATATG 60.736 50.000 25.95 17.22 44.16 1.78
2503 2621 1.477700 ACCATGTGGCACAACATATGC 59.522 47.619 25.95 0.00 44.16 3.14
2504 2622 1.477295 CCATGTGGCACAACATATGCA 59.523 47.619 25.95 0.00 45.27 3.96
2505 2623 2.532235 CATGTGGCACAACATATGCAC 58.468 47.619 25.95 2.39 45.27 4.57
2506 2624 1.613836 TGTGGCACAACATATGCACA 58.386 45.000 19.74 5.11 45.27 4.57
2507 2625 2.169330 TGTGGCACAACATATGCACAT 58.831 42.857 19.74 0.00 45.27 3.21
2508 2626 2.094649 TGTGGCACAACATATGCACATG 60.095 45.455 19.74 2.71 45.27 3.21
2509 2627 2.164017 GTGGCACAACATATGCACATGA 59.836 45.455 12.92 0.00 45.27 3.07
2510 2628 3.025262 TGGCACAACATATGCACATGAT 58.975 40.909 12.92 0.00 45.27 2.45
2511 2629 3.067040 TGGCACAACATATGCACATGATC 59.933 43.478 12.92 0.00 45.27 2.92
2512 2630 3.294102 GCACAACATATGCACATGATCG 58.706 45.455 12.92 1.80 42.88 3.69
2513 2631 3.002553 GCACAACATATGCACATGATCGA 59.997 43.478 12.92 0.00 42.88 3.59
2514 2632 4.319984 GCACAACATATGCACATGATCGAT 60.320 41.667 12.92 0.00 42.88 3.59
2515 2633 5.106987 GCACAACATATGCACATGATCGATA 60.107 40.000 12.92 0.00 42.88 2.92
2516 2634 6.301861 CACAACATATGCACATGATCGATAC 58.698 40.000 12.92 0.00 0.00 2.24
2517 2635 5.990996 ACAACATATGCACATGATCGATACA 59.009 36.000 12.92 0.00 0.00 2.29
2518 2636 6.652062 ACAACATATGCACATGATCGATACAT 59.348 34.615 12.92 1.04 0.00 2.29
2519 2637 7.173735 ACAACATATGCACATGATCGATACATT 59.826 33.333 12.92 0.00 0.00 2.71
2520 2638 7.677454 ACATATGCACATGATCGATACATTT 57.323 32.000 12.92 0.00 0.00 2.32
2521 2639 8.102800 ACATATGCACATGATCGATACATTTT 57.897 30.769 12.92 0.00 0.00 1.82
2522 2640 9.218440 ACATATGCACATGATCGATACATTTTA 57.782 29.630 12.92 0.00 0.00 1.52
2563 2681 9.019656 TGCCTCATTAGCAAAACTAAAGATTTA 57.980 29.630 0.00 0.00 43.99 1.40
2712 2830 9.754382 CGATATGTATTATCATGATCATGGTCA 57.246 33.333 30.54 19.05 37.18 4.02
2728 2846 7.764141 TCATGGTCATTACATGATATTTGGG 57.236 36.000 0.00 0.00 46.99 4.12
2748 2866 6.625873 TGGGAATGTTTTTGTTTATTTGGC 57.374 33.333 0.00 0.00 0.00 4.52
2749 2867 6.122277 TGGGAATGTTTTTGTTTATTTGGCA 58.878 32.000 0.00 0.00 0.00 4.92
2771 2889 9.213799 TGGCAGTTAAAATTCACCAAATATTTC 57.786 29.630 0.00 0.00 0.00 2.17
2797 2915 9.865321 CTATTTTGTGAATCCTCATGTGATTTT 57.135 29.630 12.36 0.00 32.74 1.82
2798 2916 7.949903 TTTTGTGAATCCTCATGTGATTTTG 57.050 32.000 12.36 0.00 32.74 2.44
2810 2928 7.654520 CCTCATGTGATTTTGATGTTCAACTTT 59.345 33.333 0.00 0.00 35.89 2.66
2811 2929 8.945481 TCATGTGATTTTGATGTTCAACTTTT 57.055 26.923 0.00 0.00 35.89 2.27
2894 3012 6.636447 TGAATGTGAAGTTTAATGTTTGCTCG 59.364 34.615 0.00 0.00 0.00 5.03
2895 3013 5.743026 TGTGAAGTTTAATGTTTGCTCGA 57.257 34.783 0.00 0.00 0.00 4.04
2917 3035 6.923508 TCGATGATAATATCACACACAGTTCC 59.076 38.462 4.93 0.00 43.01 3.62
2919 3037 5.680619 TGATAATATCACACACAGTTCCCC 58.319 41.667 0.00 0.00 33.59 4.81
2930 3048 1.002134 AGTTCCCCTGCATGGTTCG 60.002 57.895 7.30 0.00 0.00 3.95
2936 3054 1.550072 CCCCTGCATGGTTCGAAAAAT 59.450 47.619 7.30 0.00 0.00 1.82
2938 3056 3.384467 CCCCTGCATGGTTCGAAAAATAT 59.616 43.478 7.30 0.00 0.00 1.28
3017 3135 3.354948 TCTTGCTAGCCATTGTGTGAT 57.645 42.857 13.29 0.00 0.00 3.06
3136 3254 7.975616 GGCAACTGTTGAATATATTTCATGTGT 59.024 33.333 23.81 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.072505 TTGGTGGTTCTCTTCCCGC 59.927 57.895 0.00 0.00 0.00 6.13
28 29 0.107831 TGTTGGTGGTTCTCTTCCCG 59.892 55.000 0.00 0.00 0.00 5.14
71 72 0.945813 GAGCTCAAGGATGATGCAGC 59.054 55.000 9.40 0.00 34.37 5.25
72 73 1.202498 TCGAGCTCAAGGATGATGCAG 60.202 52.381 15.40 0.00 34.37 4.41
109 110 3.161450 TAGGGTGGCCTCCGCATC 61.161 66.667 17.51 3.80 35.42 3.91
110 111 3.480133 GTAGGGTGGCCTCCGCAT 61.480 66.667 17.51 8.68 35.42 4.73
120 121 1.292223 CACGTGGTCTGGTAGGGTG 59.708 63.158 7.95 0.00 0.00 4.61
122 123 1.292223 CACACGTGGTCTGGTAGGG 59.708 63.158 21.57 0.00 0.00 3.53
157 158 2.509111 TGCTGCCACACGATAGCG 60.509 61.111 0.00 0.00 44.79 4.26
171 172 4.363990 CGCTCCACCTGACGTGCT 62.364 66.667 0.00 0.00 41.53 4.40
172 173 4.664677 ACGCTCCACCTGACGTGC 62.665 66.667 0.00 0.00 41.53 5.34
176 177 0.037326 TCATCAACGCTCCACCTGAC 60.037 55.000 0.00 0.00 0.00 3.51
178 179 1.021390 GGTCATCAACGCTCCACCTG 61.021 60.000 0.00 0.00 0.00 4.00
244 245 1.403679 GCAAACCACAACACTGCTACA 59.596 47.619 0.00 0.00 0.00 2.74
250 251 0.179140 CGCAAGCAAACCACAACACT 60.179 50.000 0.00 0.00 0.00 3.55
251 252 1.145162 CCGCAAGCAAACCACAACAC 61.145 55.000 0.00 0.00 0.00 3.32
252 253 1.140589 CCGCAAGCAAACCACAACA 59.859 52.632 0.00 0.00 0.00 3.33
253 254 1.140804 ACCGCAAGCAAACCACAAC 59.859 52.632 0.00 0.00 0.00 3.32
254 255 1.140589 CACCGCAAGCAAACCACAA 59.859 52.632 0.00 0.00 0.00 3.33
255 256 2.804167 CACCGCAAGCAAACCACA 59.196 55.556 0.00 0.00 0.00 4.17
256 257 2.658268 GCACCGCAAGCAAACCAC 60.658 61.111 0.00 0.00 0.00 4.16
257 258 2.497173 ATGCACCGCAAGCAAACCA 61.497 52.632 0.00 0.00 46.27 3.67
258 259 2.023223 CATGCACCGCAAGCAAACC 61.023 57.895 0.00 0.00 46.27 3.27
259 260 2.023223 CCATGCACCGCAAGCAAAC 61.023 57.895 0.00 0.00 46.27 2.93
260 261 2.339348 CCATGCACCGCAAGCAAA 59.661 55.556 0.00 0.00 46.27 3.68
261 262 4.360964 GCCATGCACCGCAAGCAA 62.361 61.111 8.86 0.00 46.27 3.91
271 272 4.445710 ATTGAGGCGGGCCATGCA 62.446 61.111 19.47 4.22 38.92 3.96
272 273 3.908081 CATTGAGGCGGGCCATGC 61.908 66.667 12.97 8.08 38.92 4.06
273 274 3.221389 CCATTGAGGCGGGCCATG 61.221 66.667 12.97 6.97 38.92 3.66
291 292 3.362399 ATCTCCAGCGTGGCGTCAG 62.362 63.158 0.00 0.00 37.47 3.51
292 293 3.356639 GATCTCCAGCGTGGCGTCA 62.357 63.158 0.00 0.00 37.47 4.35
293 294 2.583593 GATCTCCAGCGTGGCGTC 60.584 66.667 0.00 0.00 37.47 5.19
294 295 2.842394 CTTGATCTCCAGCGTGGCGT 62.842 60.000 0.00 0.00 37.47 5.68
295 296 2.125552 TTGATCTCCAGCGTGGCG 60.126 61.111 0.00 0.00 37.47 5.69
296 297 0.179062 ATCTTGATCTCCAGCGTGGC 60.179 55.000 0.00 0.00 37.47 5.01
297 298 2.865670 GCTATCTTGATCTCCAGCGTGG 60.866 54.545 0.00 0.00 39.43 4.94
298 299 2.035704 AGCTATCTTGATCTCCAGCGTG 59.964 50.000 0.00 0.00 34.26 5.34
299 300 2.315176 AGCTATCTTGATCTCCAGCGT 58.685 47.619 0.00 0.00 34.26 5.07
300 301 3.119531 CCTAGCTATCTTGATCTCCAGCG 60.120 52.174 0.00 0.00 34.26 5.18
301 302 3.195396 CCCTAGCTATCTTGATCTCCAGC 59.805 52.174 0.00 0.00 0.00 4.85
302 303 4.415596 ACCCTAGCTATCTTGATCTCCAG 58.584 47.826 0.00 0.00 0.00 3.86
303 304 4.477536 ACCCTAGCTATCTTGATCTCCA 57.522 45.455 0.00 0.00 0.00 3.86
304 305 4.020662 CCAACCCTAGCTATCTTGATCTCC 60.021 50.000 0.00 0.00 0.00 3.71
305 306 4.020662 CCCAACCCTAGCTATCTTGATCTC 60.021 50.000 0.00 0.00 0.00 2.75
306 307 3.906846 CCCAACCCTAGCTATCTTGATCT 59.093 47.826 0.00 0.00 0.00 2.75
307 308 3.008485 CCCCAACCCTAGCTATCTTGATC 59.992 52.174 0.00 0.00 0.00 2.92
308 309 2.982488 CCCCAACCCTAGCTATCTTGAT 59.018 50.000 0.00 0.00 0.00 2.57
309 310 2.022428 TCCCCAACCCTAGCTATCTTGA 60.022 50.000 0.00 0.00 0.00 3.02
310 311 2.408565 TCCCCAACCCTAGCTATCTTG 58.591 52.381 0.00 0.00 0.00 3.02
311 312 2.889522 TCCCCAACCCTAGCTATCTT 57.110 50.000 0.00 0.00 0.00 2.40
312 313 2.695585 CTTCCCCAACCCTAGCTATCT 58.304 52.381 0.00 0.00 0.00 1.98
313 314 1.700186 CCTTCCCCAACCCTAGCTATC 59.300 57.143 0.00 0.00 0.00 2.08
314 315 1.297141 TCCTTCCCCAACCCTAGCTAT 59.703 52.381 0.00 0.00 0.00 2.97
315 316 0.720232 TCCTTCCCCAACCCTAGCTA 59.280 55.000 0.00 0.00 0.00 3.32
316 317 0.621862 CTCCTTCCCCAACCCTAGCT 60.622 60.000 0.00 0.00 0.00 3.32
317 318 1.636769 CCTCCTTCCCCAACCCTAGC 61.637 65.000 0.00 0.00 0.00 3.42
318 319 0.253207 ACCTCCTTCCCCAACCCTAG 60.253 60.000 0.00 0.00 0.00 3.02
319 320 1.103811 TACCTCCTTCCCCAACCCTA 58.896 55.000 0.00 0.00 0.00 3.53
320 321 0.549413 GTACCTCCTTCCCCAACCCT 60.549 60.000 0.00 0.00 0.00 4.34
321 322 0.549413 AGTACCTCCTTCCCCAACCC 60.549 60.000 0.00 0.00 0.00 4.11
322 323 0.910338 GAGTACCTCCTTCCCCAACC 59.090 60.000 0.00 0.00 0.00 3.77
323 324 1.832366 GAGAGTACCTCCTTCCCCAAC 59.168 57.143 0.00 0.00 35.87 3.77
324 325 1.618888 CGAGAGTACCTCCTTCCCCAA 60.619 57.143 5.97 0.00 38.71 4.12
325 326 0.033405 CGAGAGTACCTCCTTCCCCA 60.033 60.000 5.97 0.00 38.71 4.96
326 327 0.258194 TCGAGAGTACCTCCTTCCCC 59.742 60.000 5.97 0.00 38.71 4.81
327 328 1.682740 CTCGAGAGTACCTCCTTCCC 58.317 60.000 6.58 0.00 38.71 3.97
328 329 1.682740 CCTCGAGAGTACCTCCTTCC 58.317 60.000 15.71 0.00 38.71 3.46
329 330 1.682740 CCCTCGAGAGTACCTCCTTC 58.317 60.000 15.71 0.00 38.71 3.46
330 331 0.396001 GCCCTCGAGAGTACCTCCTT 60.396 60.000 15.71 0.00 38.71 3.36
331 332 1.227946 GCCCTCGAGAGTACCTCCT 59.772 63.158 15.71 0.00 38.71 3.69
332 333 1.104577 CAGCCCTCGAGAGTACCTCC 61.105 65.000 15.71 0.00 38.71 4.30
333 334 1.730451 GCAGCCCTCGAGAGTACCTC 61.730 65.000 15.71 0.00 38.55 3.85
334 335 1.755008 GCAGCCCTCGAGAGTACCT 60.755 63.158 15.71 0.00 0.00 3.08
335 336 2.052690 TGCAGCCCTCGAGAGTACC 61.053 63.158 15.71 0.00 0.00 3.34
336 337 1.139947 GTGCAGCCCTCGAGAGTAC 59.860 63.158 15.71 6.79 0.00 2.73
337 338 1.000771 AGTGCAGCCCTCGAGAGTA 60.001 57.895 15.71 0.00 0.00 2.59
338 339 2.283532 AGTGCAGCCCTCGAGAGT 60.284 61.111 15.71 0.00 0.00 3.24
339 340 1.315981 TACAGTGCAGCCCTCGAGAG 61.316 60.000 15.71 0.16 0.00 3.20
340 341 1.304134 TACAGTGCAGCCCTCGAGA 60.304 57.895 15.71 0.00 0.00 4.04
341 342 1.140589 CTACAGTGCAGCCCTCGAG 59.859 63.158 5.13 5.13 0.00 4.04
342 343 1.304134 TCTACAGTGCAGCCCTCGA 60.304 57.895 0.00 0.00 0.00 4.04
343 344 1.153745 GTCTACAGTGCAGCCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
344 345 1.153745 CGTCTACAGTGCAGCCCTC 60.154 63.158 0.00 0.00 0.00 4.30
345 346 1.185618 TTCGTCTACAGTGCAGCCCT 61.186 55.000 0.00 0.00 0.00 5.19
346 347 0.737715 CTTCGTCTACAGTGCAGCCC 60.738 60.000 0.00 0.00 0.00 5.19
347 348 0.737715 CCTTCGTCTACAGTGCAGCC 60.738 60.000 0.00 0.00 0.00 4.85
348 349 0.038159 ACCTTCGTCTACAGTGCAGC 60.038 55.000 0.00 0.00 0.00 5.25
349 350 2.747989 TCTACCTTCGTCTACAGTGCAG 59.252 50.000 0.00 0.00 0.00 4.41
350 351 2.747989 CTCTACCTTCGTCTACAGTGCA 59.252 50.000 0.00 0.00 0.00 4.57
351 352 2.097791 CCTCTACCTTCGTCTACAGTGC 59.902 54.545 0.00 0.00 0.00 4.40
352 353 3.607741 TCCTCTACCTTCGTCTACAGTG 58.392 50.000 0.00 0.00 0.00 3.66
353 354 3.370739 CCTCCTCTACCTTCGTCTACAGT 60.371 52.174 0.00 0.00 0.00 3.55
354 355 3.118334 TCCTCCTCTACCTTCGTCTACAG 60.118 52.174 0.00 0.00 0.00 2.74
355 356 2.842496 TCCTCCTCTACCTTCGTCTACA 59.158 50.000 0.00 0.00 0.00 2.74
356 357 3.134442 TCTCCTCCTCTACCTTCGTCTAC 59.866 52.174 0.00 0.00 0.00 2.59
357 358 3.382278 TCTCCTCCTCTACCTTCGTCTA 58.618 50.000 0.00 0.00 0.00 2.59
358 359 2.171870 CTCTCCTCCTCTACCTTCGTCT 59.828 54.545 0.00 0.00 0.00 4.18
359 360 2.567985 CTCTCCTCCTCTACCTTCGTC 58.432 57.143 0.00 0.00 0.00 4.20
360 361 1.213430 CCTCTCCTCCTCTACCTTCGT 59.787 57.143 0.00 0.00 0.00 3.85
361 362 1.975660 CCTCTCCTCCTCTACCTTCG 58.024 60.000 0.00 0.00 0.00 3.79
362 363 1.699730 GCCTCTCCTCCTCTACCTTC 58.300 60.000 0.00 0.00 0.00 3.46
363 364 0.106419 CGCCTCTCCTCCTCTACCTT 60.106 60.000 0.00 0.00 0.00 3.50
364 365 0.989212 TCGCCTCTCCTCCTCTACCT 60.989 60.000 0.00 0.00 0.00 3.08
365 366 0.820482 GTCGCCTCTCCTCCTCTACC 60.820 65.000 0.00 0.00 0.00 3.18
366 367 0.107116 TGTCGCCTCTCCTCCTCTAC 60.107 60.000 0.00 0.00 0.00 2.59
367 368 0.107116 GTGTCGCCTCTCCTCCTCTA 60.107 60.000 0.00 0.00 0.00 2.43
368 369 1.379309 GTGTCGCCTCTCCTCCTCT 60.379 63.158 0.00 0.00 0.00 3.69
369 370 2.766400 CGTGTCGCCTCTCCTCCTC 61.766 68.421 0.00 0.00 0.00 3.71
370 371 2.752238 CGTGTCGCCTCTCCTCCT 60.752 66.667 0.00 0.00 0.00 3.69
371 372 3.827898 CCGTGTCGCCTCTCCTCC 61.828 72.222 0.00 0.00 0.00 4.30
372 373 3.063084 ACCGTGTCGCCTCTCCTC 61.063 66.667 0.00 0.00 0.00 3.71
373 374 3.374402 CACCGTGTCGCCTCTCCT 61.374 66.667 0.00 0.00 0.00 3.69
374 375 3.343788 CTCACCGTGTCGCCTCTCC 62.344 68.421 0.00 0.00 0.00 3.71
375 376 2.179517 CTCACCGTGTCGCCTCTC 59.820 66.667 0.00 0.00 0.00 3.20
376 377 3.374402 CCTCACCGTGTCGCCTCT 61.374 66.667 0.00 0.00 0.00 3.69
377 378 2.711922 ATCCTCACCGTGTCGCCTC 61.712 63.158 0.00 0.00 0.00 4.70
378 379 2.680352 ATCCTCACCGTGTCGCCT 60.680 61.111 0.00 0.00 0.00 5.52
379 380 2.501223 TTCATCCTCACCGTGTCGCC 62.501 60.000 0.00 0.00 0.00 5.54
380 381 1.078759 CTTCATCCTCACCGTGTCGC 61.079 60.000 0.00 0.00 0.00 5.19
381 382 0.243907 ACTTCATCCTCACCGTGTCG 59.756 55.000 0.00 0.00 0.00 4.35
382 383 1.673033 CCACTTCATCCTCACCGTGTC 60.673 57.143 0.00 0.00 0.00 3.67
383 384 0.321671 CCACTTCATCCTCACCGTGT 59.678 55.000 0.00 0.00 0.00 4.49
384 385 0.608130 TCCACTTCATCCTCACCGTG 59.392 55.000 0.00 0.00 0.00 4.94
385 386 0.898320 CTCCACTTCATCCTCACCGT 59.102 55.000 0.00 0.00 0.00 4.83
386 387 0.176680 CCTCCACTTCATCCTCACCG 59.823 60.000 0.00 0.00 0.00 4.94
387 388 0.543749 CCCTCCACTTCATCCTCACC 59.456 60.000 0.00 0.00 0.00 4.02
388 389 0.543749 CCCCTCCACTTCATCCTCAC 59.456 60.000 0.00 0.00 0.00 3.51
389 390 0.417437 TCCCCTCCACTTCATCCTCA 59.583 55.000 0.00 0.00 0.00 3.86
390 391 1.127343 CTCCCCTCCACTTCATCCTC 58.873 60.000 0.00 0.00 0.00 3.71
391 392 0.327000 CCTCCCCTCCACTTCATCCT 60.327 60.000 0.00 0.00 0.00 3.24
392 393 0.326618 TCCTCCCCTCCACTTCATCC 60.327 60.000 0.00 0.00 0.00 3.51
393 394 1.127343 CTCCTCCCCTCCACTTCATC 58.873 60.000 0.00 0.00 0.00 2.92
394 395 0.327000 CCTCCTCCCCTCCACTTCAT 60.327 60.000 0.00 0.00 0.00 2.57
395 396 1.081092 CCTCCTCCCCTCCACTTCA 59.919 63.158 0.00 0.00 0.00 3.02
396 397 1.081277 ACCTCCTCCCCTCCACTTC 59.919 63.158 0.00 0.00 0.00 3.01
397 398 1.229658 CACCTCCTCCCCTCCACTT 60.230 63.158 0.00 0.00 0.00 3.16
398 399 2.452114 CACCTCCTCCCCTCCACT 59.548 66.667 0.00 0.00 0.00 4.00
399 400 3.403558 GCACCTCCTCCCCTCCAC 61.404 72.222 0.00 0.00 0.00 4.02
401 402 4.779733 TCGCACCTCCTCCCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
402 403 3.462678 GTCGCACCTCCTCCCCTC 61.463 72.222 0.00 0.00 0.00 4.30
403 404 3.846405 TTGTCGCACCTCCTCCCCT 62.846 63.158 0.00 0.00 0.00 4.79
404 405 2.670148 ATTGTCGCACCTCCTCCCC 61.670 63.158 0.00 0.00 0.00 4.81
405 406 1.450312 CATTGTCGCACCTCCTCCC 60.450 63.158 0.00 0.00 0.00 4.30
406 407 2.109126 GCATTGTCGCACCTCCTCC 61.109 63.158 0.00 0.00 0.00 4.30
407 408 1.078848 AGCATTGTCGCACCTCCTC 60.079 57.895 0.00 0.00 0.00 3.71
408 409 1.376424 CAGCATTGTCGCACCTCCT 60.376 57.895 0.00 0.00 0.00 3.69
409 410 2.401766 CCAGCATTGTCGCACCTCC 61.402 63.158 0.00 0.00 0.00 4.30
410 411 0.955428 TTCCAGCATTGTCGCACCTC 60.955 55.000 0.00 0.00 0.00 3.85
411 412 0.537143 TTTCCAGCATTGTCGCACCT 60.537 50.000 0.00 0.00 0.00 4.00
412 413 0.527565 ATTTCCAGCATTGTCGCACC 59.472 50.000 0.00 0.00 0.00 5.01
413 414 2.352503 AATTTCCAGCATTGTCGCAC 57.647 45.000 0.00 0.00 0.00 5.34
414 415 3.383620 AAAATTTCCAGCATTGTCGCA 57.616 38.095 0.00 0.00 0.00 5.10
432 433 4.113354 CCGTTTCGATTTTCACCCAAAAA 58.887 39.130 0.00 0.00 37.52 1.94
433 434 3.491104 CCCGTTTCGATTTTCACCCAAAA 60.491 43.478 0.00 0.00 38.38 2.44
434 435 2.034812 CCCGTTTCGATTTTCACCCAAA 59.965 45.455 0.00 0.00 0.00 3.28
435 436 1.609555 CCCGTTTCGATTTTCACCCAA 59.390 47.619 0.00 0.00 0.00 4.12
436 437 1.202782 TCCCGTTTCGATTTTCACCCA 60.203 47.619 0.00 0.00 0.00 4.51
437 438 1.525941 TCCCGTTTCGATTTTCACCC 58.474 50.000 0.00 0.00 0.00 4.61
438 439 3.311596 CCTATCCCGTTTCGATTTTCACC 59.688 47.826 0.00 0.00 0.00 4.02
439 440 3.311596 CCCTATCCCGTTTCGATTTTCAC 59.688 47.826 0.00 0.00 0.00 3.18
440 441 3.198200 TCCCTATCCCGTTTCGATTTTCA 59.802 43.478 0.00 0.00 0.00 2.69
441 442 3.800531 TCCCTATCCCGTTTCGATTTTC 58.199 45.455 0.00 0.00 0.00 2.29
442 443 3.918294 TCCCTATCCCGTTTCGATTTT 57.082 42.857 0.00 0.00 0.00 1.82
443 444 3.453353 TCTTCCCTATCCCGTTTCGATTT 59.547 43.478 0.00 0.00 0.00 2.17
444 445 3.036091 TCTTCCCTATCCCGTTTCGATT 58.964 45.455 0.00 0.00 0.00 3.34
445 446 2.628657 CTCTTCCCTATCCCGTTTCGAT 59.371 50.000 0.00 0.00 0.00 3.59
446 447 2.029623 CTCTTCCCTATCCCGTTTCGA 58.970 52.381 0.00 0.00 0.00 3.71
447 448 1.068741 CCTCTTCCCTATCCCGTTTCG 59.931 57.143 0.00 0.00 0.00 3.46
448 449 2.395619 TCCTCTTCCCTATCCCGTTTC 58.604 52.381 0.00 0.00 0.00 2.78
449 450 2.563039 TCCTCTTCCCTATCCCGTTT 57.437 50.000 0.00 0.00 0.00 3.60
450 451 2.399580 CTTCCTCTTCCCTATCCCGTT 58.600 52.381 0.00 0.00 0.00 4.44
451 452 1.413227 CCTTCCTCTTCCCTATCCCGT 60.413 57.143 0.00 0.00 0.00 5.28
452 453 1.343069 CCTTCCTCTTCCCTATCCCG 58.657 60.000 0.00 0.00 0.00 5.14
453 454 2.050918 CACCTTCCTCTTCCCTATCCC 58.949 57.143 0.00 0.00 0.00 3.85
454 455 1.418264 GCACCTTCCTCTTCCCTATCC 59.582 57.143 0.00 0.00 0.00 2.59
455 456 2.103941 CTGCACCTTCCTCTTCCCTATC 59.896 54.545 0.00 0.00 0.00 2.08
456 457 2.122768 CTGCACCTTCCTCTTCCCTAT 58.877 52.381 0.00 0.00 0.00 2.57
457 458 1.573108 CTGCACCTTCCTCTTCCCTA 58.427 55.000 0.00 0.00 0.00 3.53
458 459 1.204113 CCTGCACCTTCCTCTTCCCT 61.204 60.000 0.00 0.00 0.00 4.20
459 460 1.301293 CCTGCACCTTCCTCTTCCC 59.699 63.158 0.00 0.00 0.00 3.97
460 461 1.301293 CCCTGCACCTTCCTCTTCC 59.699 63.158 0.00 0.00 0.00 3.46
461 462 1.377856 GCCCTGCACCTTCCTCTTC 60.378 63.158 0.00 0.00 0.00 2.87
462 463 1.849823 AGCCCTGCACCTTCCTCTT 60.850 57.895 0.00 0.00 0.00 2.85
463 464 2.204059 AGCCCTGCACCTTCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
464 465 2.045536 CAGCCCTGCACCTTCCTC 60.046 66.667 0.00 0.00 0.00 3.71
465 466 3.655211 CCAGCCCTGCACCTTCCT 61.655 66.667 0.00 0.00 0.00 3.36
466 467 4.748144 CCCAGCCCTGCACCTTCC 62.748 72.222 0.00 0.00 0.00 3.46
467 468 2.713531 TTTCCCAGCCCTGCACCTTC 62.714 60.000 0.00 0.00 0.00 3.46
468 469 2.310930 TTTTCCCAGCCCTGCACCTT 62.311 55.000 0.00 0.00 0.00 3.50
469 470 2.097978 ATTTTCCCAGCCCTGCACCT 62.098 55.000 0.00 0.00 0.00 4.00
470 471 1.194121 AATTTTCCCAGCCCTGCACC 61.194 55.000 0.00 0.00 0.00 5.01
471 472 0.686789 AAATTTTCCCAGCCCTGCAC 59.313 50.000 0.00 0.00 0.00 4.57
472 473 1.072015 CAAAATTTTCCCAGCCCTGCA 59.928 47.619 0.00 0.00 0.00 4.41
473 474 1.347378 TCAAAATTTTCCCAGCCCTGC 59.653 47.619 0.00 0.00 0.00 4.85
474 475 3.767902 TTCAAAATTTTCCCAGCCCTG 57.232 42.857 0.00 0.00 0.00 4.45
475 476 3.909364 TCATTCAAAATTTTCCCAGCCCT 59.091 39.130 0.00 0.00 0.00 5.19
476 477 4.284829 TCATTCAAAATTTTCCCAGCCC 57.715 40.909 0.00 0.00 0.00 5.19
477 478 6.631971 TTTTCATTCAAAATTTTCCCAGCC 57.368 33.333 0.00 0.00 0.00 4.85
478 479 7.017055 CGATTTTCATTCAAAATTTTCCCAGC 58.983 34.615 0.00 0.00 43.56 4.85
479 480 8.309163 TCGATTTTCATTCAAAATTTTCCCAG 57.691 30.769 0.00 0.00 43.56 4.45
480 481 8.668510 TTCGATTTTCATTCAAAATTTTCCCA 57.331 26.923 0.00 0.00 43.56 4.37
481 482 9.381027 GTTTCGATTTTCATTCAAAATTTTCCC 57.619 29.630 0.00 0.00 43.56 3.97
482 483 9.091255 CGTTTCGATTTTCATTCAAAATTTTCC 57.909 29.630 0.00 0.00 43.56 3.13
483 484 9.091255 CCGTTTCGATTTTCATTCAAAATTTTC 57.909 29.630 0.00 0.00 43.56 2.29
484 485 8.067189 CCCGTTTCGATTTTCATTCAAAATTTT 58.933 29.630 0.00 0.00 43.56 1.82
485 486 7.439655 TCCCGTTTCGATTTTCATTCAAAATTT 59.560 29.630 0.00 0.00 43.56 1.82
486 487 6.926272 TCCCGTTTCGATTTTCATTCAAAATT 59.074 30.769 0.00 0.00 43.56 1.82
487 488 6.451393 TCCCGTTTCGATTTTCATTCAAAAT 58.549 32.000 0.00 0.00 45.76 1.82
488 489 5.833082 TCCCGTTTCGATTTTCATTCAAAA 58.167 33.333 0.00 0.00 38.38 2.44
489 490 5.440234 TCCCGTTTCGATTTTCATTCAAA 57.560 34.783 0.00 0.00 0.00 2.69
490 491 5.637006 ATCCCGTTTCGATTTTCATTCAA 57.363 34.783 0.00 0.00 0.00 2.69
491 492 5.295787 CCTATCCCGTTTCGATTTTCATTCA 59.704 40.000 0.00 0.00 0.00 2.57
492 493 5.277828 CCCTATCCCGTTTCGATTTTCATTC 60.278 44.000 0.00 0.00 0.00 2.67
493 494 4.578928 CCCTATCCCGTTTCGATTTTCATT 59.421 41.667 0.00 0.00 0.00 2.57
494 495 4.134563 CCCTATCCCGTTTCGATTTTCAT 58.865 43.478 0.00 0.00 0.00 2.57
495 496 3.537580 CCCTATCCCGTTTCGATTTTCA 58.462 45.455 0.00 0.00 0.00 2.69
496 497 2.876550 CCCCTATCCCGTTTCGATTTTC 59.123 50.000 0.00 0.00 0.00 2.29
497 498 2.506644 TCCCCTATCCCGTTTCGATTTT 59.493 45.455 0.00 0.00 0.00 1.82
498 499 2.104281 CTCCCCTATCCCGTTTCGATTT 59.896 50.000 0.00 0.00 0.00 2.17
499 500 1.692519 CTCCCCTATCCCGTTTCGATT 59.307 52.381 0.00 0.00 0.00 3.34
500 501 1.133262 TCTCCCCTATCCCGTTTCGAT 60.133 52.381 0.00 0.00 0.00 3.59
501 502 0.259647 TCTCCCCTATCCCGTTTCGA 59.740 55.000 0.00 0.00 0.00 3.71
502 503 0.674534 CTCTCCCCTATCCCGTTTCG 59.325 60.000 0.00 0.00 0.00 3.46
503 504 1.049402 CCTCTCCCCTATCCCGTTTC 58.951 60.000 0.00 0.00 0.00 2.78
504 505 0.640495 TCCTCTCCCCTATCCCGTTT 59.360 55.000 0.00 0.00 0.00 3.60
505 506 0.640495 TTCCTCTCCCCTATCCCGTT 59.360 55.000 0.00 0.00 0.00 4.44
506 507 0.188834 CTTCCTCTCCCCTATCCCGT 59.811 60.000 0.00 0.00 0.00 5.28
507 508 0.543174 CCTTCCTCTCCCCTATCCCG 60.543 65.000 0.00 0.00 0.00 5.14
508 509 0.568697 ACCTTCCTCTCCCCTATCCC 59.431 60.000 0.00 0.00 0.00 3.85
509 510 1.723288 CACCTTCCTCTCCCCTATCC 58.277 60.000 0.00 0.00 0.00 2.59
510 511 1.052617 GCACCTTCCTCTCCCCTATC 58.947 60.000 0.00 0.00 0.00 2.08
511 512 0.760945 CGCACCTTCCTCTCCCCTAT 60.761 60.000 0.00 0.00 0.00 2.57
512 513 1.381327 CGCACCTTCCTCTCCCCTA 60.381 63.158 0.00 0.00 0.00 3.53
513 514 2.685380 CGCACCTTCCTCTCCCCT 60.685 66.667 0.00 0.00 0.00 4.79
514 515 3.787001 CCGCACCTTCCTCTCCCC 61.787 72.222 0.00 0.00 0.00 4.81
515 516 4.475135 GCCGCACCTTCCTCTCCC 62.475 72.222 0.00 0.00 0.00 4.30
516 517 4.821589 CGCCGCACCTTCCTCTCC 62.822 72.222 0.00 0.00 0.00 3.71
517 518 4.821589 CCGCCGCACCTTCCTCTC 62.822 72.222 0.00 0.00 0.00 3.20
522 523 4.388499 TCTTCCCGCCGCACCTTC 62.388 66.667 0.00 0.00 0.00 3.46
523 524 4.394712 CTCTTCCCGCCGCACCTT 62.395 66.667 0.00 0.00 0.00 3.50
525 526 3.894547 TTTCTCTTCCCGCCGCACC 62.895 63.158 0.00 0.00 0.00 5.01
526 527 2.358247 TTTCTCTTCCCGCCGCAC 60.358 61.111 0.00 0.00 0.00 5.34
527 528 2.047274 CTTTCTCTTCCCGCCGCA 60.047 61.111 0.00 0.00 0.00 5.69
528 529 0.953960 TTTCTTTCTCTTCCCGCCGC 60.954 55.000 0.00 0.00 0.00 6.53
529 530 0.796927 GTTTCTTTCTCTTCCCGCCG 59.203 55.000 0.00 0.00 0.00 6.46
530 531 1.166129 GGTTTCTTTCTCTTCCCGCC 58.834 55.000 0.00 0.00 0.00 6.13
531 532 0.796927 CGGTTTCTTTCTCTTCCCGC 59.203 55.000 0.00 0.00 0.00 6.13
532 533 2.029290 TCTCGGTTTCTTTCTCTTCCCG 60.029 50.000 0.00 0.00 35.41 5.14
533 534 3.591023 CTCTCGGTTTCTTTCTCTTCCC 58.409 50.000 0.00 0.00 0.00 3.97
534 535 3.591023 CCTCTCGGTTTCTTTCTCTTCC 58.409 50.000 0.00 0.00 0.00 3.46
535 536 2.997303 GCCTCTCGGTTTCTTTCTCTTC 59.003 50.000 0.00 0.00 0.00 2.87
536 537 2.610727 CGCCTCTCGGTTTCTTTCTCTT 60.611 50.000 0.00 0.00 33.78 2.85
537 538 1.067495 CGCCTCTCGGTTTCTTTCTCT 60.067 52.381 0.00 0.00 33.78 3.10
538 539 1.351153 CGCCTCTCGGTTTCTTTCTC 58.649 55.000 0.00 0.00 33.78 2.87
539 540 3.516578 CGCCTCTCGGTTTCTTTCT 57.483 52.632 0.00 0.00 33.78 2.52
550 551 4.803426 CCACGCTCACCGCCTCTC 62.803 72.222 0.00 0.00 41.76 3.20
566 567 4.928140 TATCTCGCCCCGGGTCCC 62.928 72.222 21.85 6.34 0.00 4.46
567 568 1.765597 AAATATCTCGCCCCGGGTCC 61.766 60.000 21.85 9.21 0.00 4.46
568 569 0.320508 GAAATATCTCGCCCCGGGTC 60.321 60.000 21.85 5.22 0.00 4.46
569 570 0.763223 AGAAATATCTCGCCCCGGGT 60.763 55.000 21.85 1.06 0.00 5.28
570 571 0.320771 CAGAAATATCTCGCCCCGGG 60.321 60.000 15.80 15.80 32.03 5.73
571 572 0.320771 CCAGAAATATCTCGCCCCGG 60.321 60.000 0.00 0.00 32.03 5.73
572 573 0.679505 TCCAGAAATATCTCGCCCCG 59.320 55.000 0.00 0.00 32.03 5.73
573 574 2.104963 ACTTCCAGAAATATCTCGCCCC 59.895 50.000 0.00 0.00 32.03 5.80
574 575 3.134458 CACTTCCAGAAATATCTCGCCC 58.866 50.000 0.00 0.00 32.03 6.13
575 576 4.060038 TCACTTCCAGAAATATCTCGCC 57.940 45.455 0.00 0.00 32.03 5.54
576 577 6.610741 ATTTCACTTCCAGAAATATCTCGC 57.389 37.500 0.00 0.00 42.24 5.03
577 578 8.119226 GTCAATTTCACTTCCAGAAATATCTCG 58.881 37.037 0.00 0.00 42.98 4.04
578 579 8.401709 GGTCAATTTCACTTCCAGAAATATCTC 58.598 37.037 0.00 0.00 42.98 2.75
579 580 7.890127 TGGTCAATTTCACTTCCAGAAATATCT 59.110 33.333 0.00 0.00 42.98 1.98
580 581 8.055279 TGGTCAATTTCACTTCCAGAAATATC 57.945 34.615 0.00 0.00 42.98 1.63
581 582 8.599624 ATGGTCAATTTCACTTCCAGAAATAT 57.400 30.769 0.00 0.00 42.98 1.28
582 583 8.306038 CAATGGTCAATTTCACTTCCAGAAATA 58.694 33.333 0.00 0.00 42.98 1.40
583 584 6.923199 ATGGTCAATTTCACTTCCAGAAAT 57.077 33.333 0.00 0.00 45.01 2.17
584 585 6.098124 ACAATGGTCAATTTCACTTCCAGAAA 59.902 34.615 0.00 0.00 39.11 2.52
585 586 5.598005 ACAATGGTCAATTTCACTTCCAGAA 59.402 36.000 0.00 0.00 0.00 3.02
586 587 5.139727 ACAATGGTCAATTTCACTTCCAGA 58.860 37.500 0.00 0.00 0.00 3.86
587 588 5.458041 ACAATGGTCAATTTCACTTCCAG 57.542 39.130 0.00 0.00 0.00 3.86
588 589 6.068010 ACTACAATGGTCAATTTCACTTCCA 58.932 36.000 0.00 0.00 0.00 3.53
589 590 6.575162 ACTACAATGGTCAATTTCACTTCC 57.425 37.500 0.00 0.00 0.00 3.46
590 591 7.425606 ACAACTACAATGGTCAATTTCACTTC 58.574 34.615 0.00 0.00 0.00 3.01
591 592 7.346751 ACAACTACAATGGTCAATTTCACTT 57.653 32.000 0.00 0.00 0.00 3.16
592 593 6.959639 ACAACTACAATGGTCAATTTCACT 57.040 33.333 0.00 0.00 0.00 3.41
593 594 8.564574 TCTTACAACTACAATGGTCAATTTCAC 58.435 33.333 0.00 0.00 0.00 3.18
594 595 8.564574 GTCTTACAACTACAATGGTCAATTTCA 58.435 33.333 0.00 0.00 0.00 2.69
595 596 8.564574 TGTCTTACAACTACAATGGTCAATTTC 58.435 33.333 0.00 0.00 0.00 2.17
596 597 8.458573 TGTCTTACAACTACAATGGTCAATTT 57.541 30.769 0.00 0.00 0.00 1.82
597 598 8.635765 ATGTCTTACAACTACAATGGTCAATT 57.364 30.769 0.00 0.00 0.00 2.32
598 599 7.336931 GGATGTCTTACAACTACAATGGTCAAT 59.663 37.037 0.00 0.00 0.00 2.57
599 600 6.653320 GGATGTCTTACAACTACAATGGTCAA 59.347 38.462 0.00 0.00 0.00 3.18
600 601 6.170506 GGATGTCTTACAACTACAATGGTCA 58.829 40.000 0.00 0.00 0.00 4.02
601 602 5.585047 GGGATGTCTTACAACTACAATGGTC 59.415 44.000 0.00 0.00 0.00 4.02
602 603 5.497474 GGGATGTCTTACAACTACAATGGT 58.503 41.667 0.00 0.00 0.00 3.55
603 604 4.881850 GGGGATGTCTTACAACTACAATGG 59.118 45.833 0.00 0.00 0.00 3.16
604 605 5.354234 GTGGGGATGTCTTACAACTACAATG 59.646 44.000 0.00 0.00 0.00 2.82
605 606 5.497474 GTGGGGATGTCTTACAACTACAAT 58.503 41.667 0.00 0.00 0.00 2.71
606 607 4.561938 CGTGGGGATGTCTTACAACTACAA 60.562 45.833 0.00 0.00 0.00 2.41
607 608 3.056393 CGTGGGGATGTCTTACAACTACA 60.056 47.826 0.00 0.00 0.00 2.74
608 609 3.056322 ACGTGGGGATGTCTTACAACTAC 60.056 47.826 0.00 0.00 0.00 2.73
609 610 3.167485 ACGTGGGGATGTCTTACAACTA 58.833 45.455 0.00 0.00 0.00 2.24
610 611 1.975680 ACGTGGGGATGTCTTACAACT 59.024 47.619 0.00 0.00 0.00 3.16
611 612 2.467566 ACGTGGGGATGTCTTACAAC 57.532 50.000 0.00 0.00 0.00 3.32
612 613 4.829872 ATTACGTGGGGATGTCTTACAA 57.170 40.909 0.00 0.00 0.00 2.41
613 614 4.829872 AATTACGTGGGGATGTCTTACA 57.170 40.909 0.00 0.00 0.00 2.41
614 615 4.201881 GCAAATTACGTGGGGATGTCTTAC 60.202 45.833 0.00 0.00 0.00 2.34
615 616 3.942748 GCAAATTACGTGGGGATGTCTTA 59.057 43.478 0.00 0.00 0.00 2.10
616 617 2.752903 GCAAATTACGTGGGGATGTCTT 59.247 45.455 0.00 0.00 0.00 3.01
617 618 2.365582 GCAAATTACGTGGGGATGTCT 58.634 47.619 0.00 0.00 0.00 3.41
618 619 1.063469 CGCAAATTACGTGGGGATGTC 59.937 52.381 0.00 0.00 0.00 3.06
619 620 1.091537 CGCAAATTACGTGGGGATGT 58.908 50.000 0.00 0.00 0.00 3.06
620 621 1.091537 ACGCAAATTACGTGGGGATG 58.908 50.000 0.00 0.00 43.23 3.51
621 622 2.282407 GTACGCAAATTACGTGGGGAT 58.718 47.619 14.69 0.00 44.79 3.85
622 623 1.001746 TGTACGCAAATTACGTGGGGA 59.998 47.619 14.69 0.00 44.79 4.81
623 624 1.440708 TGTACGCAAATTACGTGGGG 58.559 50.000 14.69 0.00 44.79 4.96
624 625 2.417239 ACATGTACGCAAATTACGTGGG 59.583 45.455 14.69 4.26 44.79 4.61
625 626 3.120477 ACACATGTACGCAAATTACGTGG 60.120 43.478 14.69 6.13 44.79 4.94
626 627 4.060288 ACACATGTACGCAAATTACGTG 57.940 40.909 14.69 6.38 44.79 4.49
628 629 4.314948 TGACACATGTACGCAAATTACG 57.685 40.909 0.00 0.00 0.00 3.18
629 630 6.033407 CCAATTGACACATGTACGCAAATTAC 59.967 38.462 7.12 0.00 0.00 1.89
630 631 6.072452 TCCAATTGACACATGTACGCAAATTA 60.072 34.615 7.12 0.00 0.00 1.40
631 632 4.922692 CCAATTGACACATGTACGCAAATT 59.077 37.500 7.12 0.00 0.00 1.82
632 633 4.217334 TCCAATTGACACATGTACGCAAAT 59.783 37.500 7.12 0.00 0.00 2.32
633 634 3.565902 TCCAATTGACACATGTACGCAAA 59.434 39.130 7.12 0.00 0.00 3.68
634 635 3.142174 TCCAATTGACACATGTACGCAA 58.858 40.909 7.12 3.81 0.00 4.85
635 636 2.741517 CTCCAATTGACACATGTACGCA 59.258 45.455 7.12 0.00 0.00 5.24
636 637 3.000041 TCTCCAATTGACACATGTACGC 59.000 45.455 7.12 0.00 0.00 4.42
637 638 4.869861 TCATCTCCAATTGACACATGTACG 59.130 41.667 7.12 0.00 0.00 3.67
638 639 5.295292 CCTCATCTCCAATTGACACATGTAC 59.705 44.000 7.12 0.00 0.00 2.90
639 640 5.430886 CCTCATCTCCAATTGACACATGTA 58.569 41.667 7.12 0.00 0.00 2.29
640 641 4.267536 CCTCATCTCCAATTGACACATGT 58.732 43.478 7.12 0.00 0.00 3.21
641 642 3.066342 GCCTCATCTCCAATTGACACATG 59.934 47.826 7.12 3.91 0.00 3.21
642 643 3.285484 GCCTCATCTCCAATTGACACAT 58.715 45.455 7.12 0.00 0.00 3.21
643 644 2.040145 TGCCTCATCTCCAATTGACACA 59.960 45.455 7.12 0.00 0.00 3.72
644 645 2.715046 TGCCTCATCTCCAATTGACAC 58.285 47.619 7.12 0.00 0.00 3.67
645 646 3.548770 GATGCCTCATCTCCAATTGACA 58.451 45.455 7.12 0.00 37.82 3.58
646 647 2.547211 CGATGCCTCATCTCCAATTGAC 59.453 50.000 7.12 0.00 38.59 3.18
647 648 2.486013 CCGATGCCTCATCTCCAATTGA 60.486 50.000 7.12 0.00 38.59 2.57
648 649 1.878088 CCGATGCCTCATCTCCAATTG 59.122 52.381 0.00 0.00 38.59 2.32
649 650 1.816961 GCCGATGCCTCATCTCCAATT 60.817 52.381 5.42 0.00 38.59 2.32
650 651 0.250640 GCCGATGCCTCATCTCCAAT 60.251 55.000 5.42 0.00 38.59 3.16
651 652 1.146930 GCCGATGCCTCATCTCCAA 59.853 57.895 5.42 0.00 38.59 3.53
652 653 0.469892 TAGCCGATGCCTCATCTCCA 60.470 55.000 5.42 0.00 38.59 3.86
653 654 0.037790 GTAGCCGATGCCTCATCTCC 60.038 60.000 5.42 0.00 38.59 3.71
654 655 0.676184 TGTAGCCGATGCCTCATCTC 59.324 55.000 5.42 0.00 38.59 2.75
655 656 1.123077 TTGTAGCCGATGCCTCATCT 58.877 50.000 5.42 0.00 38.59 2.90
656 657 1.802960 CATTGTAGCCGATGCCTCATC 59.197 52.381 0.00 0.00 38.69 2.92
657 658 1.141657 ACATTGTAGCCGATGCCTCAT 59.858 47.619 0.00 0.00 36.10 2.90
658 659 0.541392 ACATTGTAGCCGATGCCTCA 59.459 50.000 0.00 0.00 36.10 3.86
659 660 0.940126 CACATTGTAGCCGATGCCTC 59.060 55.000 0.00 0.00 36.10 4.70
660 661 0.541392 TCACATTGTAGCCGATGCCT 59.459 50.000 0.00 0.00 36.10 4.75
661 662 1.331756 CTTCACATTGTAGCCGATGCC 59.668 52.381 0.00 0.00 36.10 4.40
662 663 1.268234 GCTTCACATTGTAGCCGATGC 60.268 52.381 0.83 0.04 35.15 3.91
663 664 1.004610 CGCTTCACATTGTAGCCGATG 60.005 52.381 6.08 0.00 37.47 3.84
664 665 1.290203 CGCTTCACATTGTAGCCGAT 58.710 50.000 6.08 0.00 37.47 4.18
665 666 0.037697 ACGCTTCACATTGTAGCCGA 60.038 50.000 6.08 0.00 37.47 5.54
666 667 1.635844 TACGCTTCACATTGTAGCCG 58.364 50.000 6.08 4.63 37.47 5.52
667 668 3.246226 CAGATACGCTTCACATTGTAGCC 59.754 47.826 6.08 0.00 37.47 3.93
668 669 4.112634 TCAGATACGCTTCACATTGTAGC 58.887 43.478 2.08 2.08 37.41 3.58
669 670 5.750547 ACATCAGATACGCTTCACATTGTAG 59.249 40.000 0.00 0.00 0.00 2.74
670 671 5.519927 CACATCAGATACGCTTCACATTGTA 59.480 40.000 0.00 0.00 0.00 2.41
671 672 4.330894 CACATCAGATACGCTTCACATTGT 59.669 41.667 0.00 0.00 0.00 2.71
672 673 4.567959 TCACATCAGATACGCTTCACATTG 59.432 41.667 0.00 0.00 0.00 2.82
673 674 4.758688 TCACATCAGATACGCTTCACATT 58.241 39.130 0.00 0.00 0.00 2.71
674 675 4.366586 CTCACATCAGATACGCTTCACAT 58.633 43.478 0.00 0.00 0.00 3.21
675 676 3.774066 CTCACATCAGATACGCTTCACA 58.226 45.455 0.00 0.00 0.00 3.58
676 677 2.537625 GCTCACATCAGATACGCTTCAC 59.462 50.000 0.00 0.00 0.00 3.18
677 678 2.428530 AGCTCACATCAGATACGCTTCA 59.571 45.455 0.00 0.00 0.00 3.02
678 679 3.090952 AGCTCACATCAGATACGCTTC 57.909 47.619 0.00 0.00 0.00 3.86
679 680 3.551863 GCTAGCTCACATCAGATACGCTT 60.552 47.826 7.70 0.00 0.00 4.68
680 681 2.030363 GCTAGCTCACATCAGATACGCT 60.030 50.000 7.70 0.00 0.00 5.07
681 682 2.030363 AGCTAGCTCACATCAGATACGC 60.030 50.000 12.68 0.00 0.00 4.42
682 683 3.913548 AGCTAGCTCACATCAGATACG 57.086 47.619 12.68 0.00 0.00 3.06
697 698 6.166982 ACAAGACTTAAAGTGGCTAAGCTAG 58.833 40.000 0.00 0.00 30.79 3.42
698 699 6.110411 ACAAGACTTAAAGTGGCTAAGCTA 57.890 37.500 0.00 0.00 30.79 3.32
699 700 4.974399 ACAAGACTTAAAGTGGCTAAGCT 58.026 39.130 0.00 0.00 30.79 3.74
700 701 5.690997 AACAAGACTTAAAGTGGCTAAGC 57.309 39.130 0.00 0.00 30.79 3.09
705 706 9.665264 GCATATATAAACAAGACTTAAAGTGGC 57.335 33.333 0.00 0.00 0.00 5.01
726 727 8.929746 CACGTATTCATCTCAAAGTATGCATAT 58.070 33.333 10.16 0.00 0.00 1.78
727 728 7.384932 CCACGTATTCATCTCAAAGTATGCATA 59.615 37.037 1.16 1.16 0.00 3.14
734 735 3.263425 ACCCCACGTATTCATCTCAAAGT 59.737 43.478 0.00 0.00 0.00 2.66
736 737 3.605634 CACCCCACGTATTCATCTCAAA 58.394 45.455 0.00 0.00 0.00 2.69
740 741 1.580059 ACCACCCCACGTATTCATCT 58.420 50.000 0.00 0.00 0.00 2.90
779 780 7.257722 CCATGCGACTGAATTTTATTTTAGGT 58.742 34.615 0.00 0.00 0.00 3.08
825 826 8.131100 AGACATTGTCAAAATAAAGAGTGTGTG 58.869 33.333 18.57 0.00 34.60 3.82
826 827 8.131100 CAGACATTGTCAAAATAAAGAGTGTGT 58.869 33.333 18.57 0.00 34.60 3.72
827 828 8.131100 ACAGACATTGTCAAAATAAAGAGTGTG 58.869 33.333 18.57 5.64 33.87 3.82
853 855 1.405105 GCTTCAGTCAAAGTTGCACCA 59.595 47.619 0.00 0.00 0.00 4.17
919 921 1.795286 GCGCTATATCTGTCTTGCCAC 59.205 52.381 0.00 0.00 0.00 5.01
935 937 1.142748 GTGTCTATGAGGCTGCGCT 59.857 57.895 9.73 0.00 0.00 5.92
966 1043 3.210358 ACAACAACAAGAACAACCACG 57.790 42.857 0.00 0.00 0.00 4.94
976 1053 4.614555 TGCTACTGACAACAACAACAAG 57.385 40.909 0.00 0.00 0.00 3.16
993 1079 2.043604 CTCCGGCACCCATGATGCTA 62.044 60.000 17.96 6.83 42.93 3.49
1173 1259 2.168728 GTCATGGACCAAGTAGGAGGAC 59.831 54.545 0.00 0.00 41.22 3.85
1293 1395 2.360350 AACATGACGCAGCCCTGG 60.360 61.111 0.00 0.00 0.00 4.45
1593 1695 1.726791 GTGTTGAGCGACAGGTACATG 59.273 52.381 5.87 5.87 0.00 3.21
1647 1749 2.652095 CGGGCTGTAGGGGTCGAAA 61.652 63.158 0.00 0.00 0.00 3.46
1687 1789 3.201290 CGTCTGAGATGAAAATCTGGGG 58.799 50.000 0.00 0.00 0.00 4.96
1989 2101 1.036481 TGGCGTGGTAGTGCGGTATA 61.036 55.000 0.00 0.00 0.00 1.47
2288 2406 1.748879 CCAAACCATGTCCGGCGAT 60.749 57.895 9.30 0.00 0.00 4.58
2404 2522 7.007905 CCGACATAAACACGAAATGGTTTATTG 59.992 37.037 6.95 6.27 43.83 1.90
2418 2536 7.218204 GTGCTATGAAAAATCCGACATAAACAC 59.782 37.037 0.00 0.00 31.71 3.32
2442 2560 3.885297 AGTCATGGAAAAGAACTGGTGTG 59.115 43.478 0.00 0.00 0.00 3.82
2462 2580 3.641031 GGTGTGCAAAAGCGAAAGT 57.359 47.368 0.00 0.00 0.00 2.66
2474 2592 4.041917 CCACATGGTGCGGTGTGC 62.042 66.667 0.00 0.00 43.28 4.57
2475 2593 4.041917 GCCACATGGTGCGGTGTG 62.042 66.667 0.00 0.00 44.02 3.82
2476 2594 4.577677 TGCCACATGGTGCGGTGT 62.578 61.111 0.00 0.00 37.57 4.16
2499 2617 9.218440 ACATAAAATGTATCGATCATGTGCATA 57.782 29.630 0.00 0.00 42.78 3.14
2500 2618 8.102800 ACATAAAATGTATCGATCATGTGCAT 57.897 30.769 0.00 0.00 42.78 3.96
2501 2619 7.495135 ACATAAAATGTATCGATCATGTGCA 57.505 32.000 0.00 0.00 42.78 4.57
2502 2620 7.324375 CCAACATAAAATGTATCGATCATGTGC 59.676 37.037 0.00 0.00 44.07 4.57
2503 2621 7.324375 GCCAACATAAAATGTATCGATCATGTG 59.676 37.037 0.00 6.30 44.07 3.21
2504 2622 7.362662 GCCAACATAAAATGTATCGATCATGT 58.637 34.615 0.00 0.00 44.07 3.21
2505 2623 6.803320 GGCCAACATAAAATGTATCGATCATG 59.197 38.462 0.00 0.00 44.07 3.07
2506 2624 6.489700 TGGCCAACATAAAATGTATCGATCAT 59.510 34.615 0.61 2.74 44.07 2.45
2507 2625 5.825151 TGGCCAACATAAAATGTATCGATCA 59.175 36.000 0.61 0.03 44.07 2.92
2508 2626 6.312399 TGGCCAACATAAAATGTATCGATC 57.688 37.500 0.61 0.00 44.07 3.69
2509 2627 6.707440 TTGGCCAACATAAAATGTATCGAT 57.293 33.333 16.05 2.16 44.07 3.59
2510 2628 6.707440 ATTGGCCAACATAAAATGTATCGA 57.293 33.333 23.27 0.00 44.07 3.59
2513 2631 9.874205 GCATATATTGGCCAACATAAAATGTAT 57.126 29.630 23.27 13.49 44.07 2.29
2771 2889 9.865321 AAAATCACATGAGGATTCACAAAATAG 57.135 29.630 14.60 0.00 35.83 1.73
2894 3012 6.428159 GGGGAACTGTGTGTGATATTATCATC 59.572 42.308 9.50 7.12 42.04 2.92
2895 3013 6.101734 AGGGGAACTGTGTGTGATATTATCAT 59.898 38.462 9.50 0.00 42.04 2.45
2917 3035 4.654091 ATATTTTTCGAACCATGCAGGG 57.346 40.909 17.55 17.55 43.89 4.45
2919 3037 8.854979 TTCAATATATTTTTCGAACCATGCAG 57.145 30.769 0.00 0.00 0.00 4.41
3050 3168 9.755064 CACTAAATCACTAATCAAAACTTACCG 57.245 33.333 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.