Multiple sequence alignment - TraesCS6A01G280000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G280000 chr6A 100.000 6292 0 0 1 6292 508290302 508296593 0.000000e+00 11620.0
1 TraesCS6A01G280000 chr6A 90.053 1327 110 15 3545 4866 508333530 508334839 0.000000e+00 1700.0
2 TraesCS6A01G280000 chr6A 90.008 1231 122 1 3688 4918 509562293 509561064 0.000000e+00 1591.0
3 TraesCS6A01G280000 chr6A 88.650 1207 115 10 3691 4880 509285785 509284584 0.000000e+00 1450.0
4 TraesCS6A01G280000 chr6A 88.773 766 83 3 5401 6164 577698014 577697250 0.000000e+00 935.0
5 TraesCS6A01G280000 chr6A 87.246 541 64 5 5400 5936 577696336 577696875 4.170000e-171 612.0
6 TraesCS6A01G280000 chr6A 92.366 393 28 2 5401 5791 577714823 577714431 5.510000e-155 558.0
7 TraesCS6A01G280000 chr6A 85.192 547 63 4 5393 5938 508297477 508296948 4.290000e-151 545.0
8 TraesCS6A01G280000 chr6A 89.352 432 43 3 5400 5829 577713910 577714340 2.000000e-149 540.0
9 TraesCS6A01G280000 chr6A 89.308 159 14 2 5100 5258 508334849 508335004 4.980000e-46 196.0
10 TraesCS6A01G280000 chr6B 93.077 3640 161 45 1799 5385 554167485 554163884 0.000000e+00 5241.0
11 TraesCS6A01G280000 chr6B 93.906 1165 43 18 644 1801 554168662 554167519 0.000000e+00 1733.0
12 TraesCS6A01G280000 chr6B 89.647 1333 109 19 3545 4865 554123889 554122574 0.000000e+00 1670.0
13 TraesCS6A01G280000 chr6B 94.472 597 28 5 1 595 554169250 554168657 0.000000e+00 915.0
14 TraesCS6A01G280000 chr6B 85.427 199 16 6 5100 5291 554122563 554122371 1.790000e-45 195.0
15 TraesCS6A01G280000 chr6D 94.837 2421 98 15 2972 5382 367864198 367866601 0.000000e+00 3753.0
16 TraesCS6A01G280000 chr6D 94.779 1360 57 7 1 1357 367860926 367862274 0.000000e+00 2106.0
17 TraesCS6A01G280000 chr6D 92.213 1220 84 8 3649 4866 367875893 367877103 0.000000e+00 1716.0
18 TraesCS6A01G280000 chr6D 90.121 1235 116 4 3688 4918 368741027 368739795 0.000000e+00 1600.0
19 TraesCS6A01G280000 chr6D 89.840 1191 119 2 3691 4880 368372233 368371044 0.000000e+00 1528.0
20 TraesCS6A01G280000 chr6D 88.628 1108 51 30 1886 2967 367863057 367864115 0.000000e+00 1279.0
21 TraesCS6A01G280000 chr6D 92.547 322 15 4 1481 1801 367862644 367862957 2.670000e-123 453.0
22 TraesCS6A01G280000 chr6D 86.979 192 18 3 5100 5291 367877113 367877297 6.390000e-50 209.0
23 TraesCS6A01G280000 chr6D 89.091 55 4 2 1815 1867 367863013 367863067 4.070000e-07 67.6
24 TraesCS6A01G280000 chr1D 86.683 413 51 4 3669 4078 93821396 93821807 7.440000e-124 455.0
25 TraesCS6A01G280000 chr3A 91.753 194 12 3 5402 5591 356083170 356082977 3.740000e-67 267.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G280000 chr6A 508290302 508296593 6291 False 11620.000000 11620 100.000000 1 6292 1 chr6A.!!$F1 6291
1 TraesCS6A01G280000 chr6A 509561064 509562293 1229 True 1591.000000 1591 90.008000 3688 4918 1 chr6A.!!$R3 1230
2 TraesCS6A01G280000 chr6A 509284584 509285785 1201 True 1450.000000 1450 88.650000 3691 4880 1 chr6A.!!$R2 1189
3 TraesCS6A01G280000 chr6A 508333530 508335004 1474 False 948.000000 1700 89.680500 3545 5258 2 chr6A.!!$F4 1713
4 TraesCS6A01G280000 chr6A 577697250 577698014 764 True 935.000000 935 88.773000 5401 6164 1 chr6A.!!$R4 763
5 TraesCS6A01G280000 chr6A 577696336 577696875 539 False 612.000000 612 87.246000 5400 5936 1 chr6A.!!$F2 536
6 TraesCS6A01G280000 chr6A 508296948 508297477 529 True 545.000000 545 85.192000 5393 5938 1 chr6A.!!$R1 545
7 TraesCS6A01G280000 chr6B 554163884 554169250 5366 True 2629.666667 5241 93.818333 1 5385 3 chr6B.!!$R2 5384
8 TraesCS6A01G280000 chr6B 554122371 554123889 1518 True 932.500000 1670 87.537000 3545 5291 2 chr6B.!!$R1 1746
9 TraesCS6A01G280000 chr6D 368739795 368741027 1232 True 1600.000000 1600 90.121000 3688 4918 1 chr6D.!!$R2 1230
10 TraesCS6A01G280000 chr6D 367860926 367866601 5675 False 1531.720000 3753 91.976400 1 5382 5 chr6D.!!$F1 5381
11 TraesCS6A01G280000 chr6D 368371044 368372233 1189 True 1528.000000 1528 89.840000 3691 4880 1 chr6D.!!$R1 1189
12 TraesCS6A01G280000 chr6D 367875893 367877297 1404 False 962.500000 1716 89.596000 3649 5291 2 chr6D.!!$F2 1642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 1.172812 GGTTGCCTTGACAGGTGGAC 61.173 60.0 0.00 0.00 43.18 4.02 F
1485 1742 0.248621 CCGAATTCCCAGCGAAATGC 60.249 55.0 0.00 0.00 46.98 3.56 F
2575 2906 0.249073 CCAGCAGTCCTAATCGGTCG 60.249 60.0 0.00 0.00 0.00 4.79 F
2616 2947 0.100503 GTTAATGCCTGCCGCGAATT 59.899 50.0 8.23 0.01 42.08 2.17 F
2728 3059 0.112606 TTTATGGTTTGGCCGTGGGA 59.887 50.0 0.00 0.00 41.21 4.37 F
3684 4127 0.392193 CCATCTGACCACCTGTGCTC 60.392 60.0 0.00 0.00 0.00 4.26 F
4886 5353 0.652592 GCCGTCAAGATCCATCAACG 59.347 55.0 0.00 0.00 32.79 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1772 0.107703 TCTAATCCTGCCCGTTGCTG 60.108 55.0 0.00 0.0 42.00 4.41 R
2580 2911 0.035439 AACCCTGGATTACACGGCTG 60.035 55.0 0.00 0.0 0.00 4.85 R
4048 4512 0.322277 AGTAGTCGGAGAAGGCGTGA 60.322 55.0 0.00 0.0 39.69 4.35 R
4432 4896 0.743701 CGAGCTTCAGCAGAGCCAAT 60.744 55.0 0.75 0.0 45.16 3.16 R
4516 4980 0.842030 AGGTGATCAGGACCAGCCAA 60.842 55.0 0.00 0.0 40.02 4.52 R
5093 5561 0.242825 CTAAGCCGACGACTGGAACA 59.757 55.0 0.00 0.0 0.00 3.18 R
6200 6683 0.179000 AGAGATTGACATCGGGCCAC 59.821 55.0 4.39 0.0 34.17 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.172812 GGTTGCCTTGACAGGTGGAC 61.173 60.000 0.00 0.00 43.18 4.02
116 117 2.094675 AGAAAGAATGATTGGCCGGTG 58.905 47.619 1.90 0.00 0.00 4.94
199 200 9.507329 GCCATTTCTAATCCTTGAATCATACTA 57.493 33.333 0.00 0.00 0.00 1.82
332 334 6.651643 TGGTAATTGTCAAGTTGCGTATAAGT 59.348 34.615 0.00 0.00 0.00 2.24
387 389 6.889198 TCCCTCTGATTCGAATTAATTGACT 58.111 36.000 12.81 0.00 0.00 3.41
408 410 7.781056 TGACTGCAACATCTATACAATGTCTA 58.219 34.615 0.00 0.00 36.35 2.59
410 412 7.212976 ACTGCAACATCTATACAATGTCTAGG 58.787 38.462 6.05 0.00 36.35 3.02
417 419 9.241919 ACATCTATACAATGTCTAGGATCAGAG 57.758 37.037 6.05 0.00 31.82 3.35
443 445 9.747293 GGGAGTACTAGATTAAGATTACAACAC 57.253 37.037 0.00 0.00 0.00 3.32
698 704 3.334583 TCCAGGATCTGTTTGCTGTAC 57.665 47.619 0.00 0.00 33.59 2.90
724 730 2.532715 AGGGGAAAGGCCTCAGCA 60.533 61.111 5.23 0.00 40.87 4.41
979 985 1.533129 CGGGGCGCTTTTAAATAGCAC 60.533 52.381 7.64 11.40 38.55 4.40
1383 1394 1.302832 CTCGAGGGGCTGCTGTTTT 60.303 57.895 3.91 0.00 0.00 2.43
1385 1396 0.889186 TCGAGGGGCTGCTGTTTTTC 60.889 55.000 0.00 0.00 0.00 2.29
1391 1402 0.540597 GGCTGCTGTTTTTCTCCCCT 60.541 55.000 0.00 0.00 0.00 4.79
1439 1450 3.861263 GTCCGTCAATTCGCCGCC 61.861 66.667 0.00 0.00 0.00 6.13
1485 1742 0.248621 CCGAATTCCCAGCGAAATGC 60.249 55.000 0.00 0.00 46.98 3.56
1515 1772 3.423154 CACTGTTTCGCCCGAGGC 61.423 66.667 4.96 4.96 46.75 4.70
1535 1792 2.695314 GCAACGGGCAGGATTAGAG 58.305 57.895 0.00 0.00 43.97 2.43
1618 1875 2.460669 TCTTGCTACCAGATCTGCAGA 58.539 47.619 20.79 20.79 36.75 4.26
1710 1967 7.043590 CCGTTACCACTCATTTTAGATTCGTAG 60.044 40.741 0.00 0.00 0.00 3.51
1715 1972 7.711339 ACCACTCATTTTAGATTCGTAGAATCC 59.289 37.037 16.41 2.78 45.90 3.01
1753 2011 2.859992 CTGCCTTTGTCAGCTACCC 58.140 57.895 0.00 0.00 0.00 3.69
1754 2012 1.003839 TGCCTTTGTCAGCTACCCG 60.004 57.895 0.00 0.00 0.00 5.28
1756 2014 0.605589 GCCTTTGTCAGCTACCCGTT 60.606 55.000 0.00 0.00 0.00 4.44
1757 2015 1.338389 GCCTTTGTCAGCTACCCGTTA 60.338 52.381 0.00 0.00 0.00 3.18
1758 2016 2.618053 CCTTTGTCAGCTACCCGTTAG 58.382 52.381 0.00 0.00 0.00 2.34
1759 2017 2.028385 CCTTTGTCAGCTACCCGTTAGT 60.028 50.000 0.00 0.00 0.00 2.24
1760 2018 3.194116 CCTTTGTCAGCTACCCGTTAGTA 59.806 47.826 0.00 0.00 0.00 1.82
1761 2019 3.855689 TTGTCAGCTACCCGTTAGTAC 57.144 47.619 0.00 0.00 0.00 2.73
1801 2059 1.201414 GCACCAAAATTGTAGTCCCCG 59.799 52.381 0.00 0.00 0.00 5.73
1802 2060 1.816224 CACCAAAATTGTAGTCCCCGG 59.184 52.381 0.00 0.00 0.00 5.73
1854 2156 1.030457 AGGTCGTGATTAGGCCGTAG 58.970 55.000 0.00 0.00 0.00 3.51
1861 2163 1.296727 GATTAGGCCGTAGCAACACC 58.703 55.000 0.00 0.00 42.56 4.16
1880 2182 5.733676 ACACCAATTGCATATCTTTTTCCC 58.266 37.500 0.00 0.00 0.00 3.97
1881 2183 4.805192 CACCAATTGCATATCTTTTTCCCG 59.195 41.667 0.00 0.00 0.00 5.14
1904 2206 4.709886 GGGTAACACTAATTGGCCTTTGAT 59.290 41.667 3.32 0.00 39.74 2.57
1963 2270 1.134818 TGGCCGTTATGACTAGCACAG 60.135 52.381 0.00 0.00 0.00 3.66
2311 2631 3.019564 AGAAAGAGCCTGCGCAATATTT 58.980 40.909 13.05 10.32 37.52 1.40
2500 2825 2.356780 GGCAGCCGTGGTAGGTAGT 61.357 63.158 0.00 0.00 0.00 2.73
2501 2826 1.039233 GGCAGCCGTGGTAGGTAGTA 61.039 60.000 0.00 0.00 0.00 1.82
2502 2827 0.384669 GCAGCCGTGGTAGGTAGTAG 59.615 60.000 0.00 0.00 0.00 2.57
2513 2838 1.372623 GGTAGTAGCCCGTATGCGC 60.373 63.158 0.00 0.00 36.67 6.09
2571 2902 0.249657 GGAGCCAGCAGTCCTAATCG 60.250 60.000 0.00 0.00 0.00 3.34
2572 2903 0.249657 GAGCCAGCAGTCCTAATCGG 60.250 60.000 0.00 0.00 0.00 4.18
2573 2904 0.978146 AGCCAGCAGTCCTAATCGGT 60.978 55.000 0.00 0.00 0.00 4.69
2574 2905 0.530870 GCCAGCAGTCCTAATCGGTC 60.531 60.000 0.00 0.00 0.00 4.79
2575 2906 0.249073 CCAGCAGTCCTAATCGGTCG 60.249 60.000 0.00 0.00 0.00 4.79
2576 2907 0.872021 CAGCAGTCCTAATCGGTCGC 60.872 60.000 0.00 0.00 0.00 5.19
2577 2908 1.591863 GCAGTCCTAATCGGTCGCC 60.592 63.158 0.00 0.00 0.00 5.54
2578 2909 2.017559 GCAGTCCTAATCGGTCGCCT 62.018 60.000 0.00 0.00 0.00 5.52
2579 2910 1.315690 CAGTCCTAATCGGTCGCCTA 58.684 55.000 0.00 0.00 0.00 3.93
2580 2911 1.001597 CAGTCCTAATCGGTCGCCTAC 60.002 57.143 0.00 0.00 0.00 3.18
2583 2914 0.318784 CCTAATCGGTCGCCTACAGC 60.319 60.000 0.00 0.00 38.52 4.40
2610 2941 2.120909 CCAGGGTTAATGCCTGCCG 61.121 63.158 0.00 0.00 0.00 5.69
2616 2947 0.100503 GTTAATGCCTGCCGCGAATT 59.899 50.000 8.23 0.01 42.08 2.17
2639 2970 2.487934 CAGGCCAGTCCTAATCAATCG 58.512 52.381 5.01 0.00 45.52 3.34
2643 2974 2.037251 GCCAGTCCTAATCAATCGGCTA 59.963 50.000 0.00 0.00 35.39 3.93
2645 2976 3.321497 CAGTCCTAATCAATCGGCTAGC 58.679 50.000 6.04 6.04 0.00 3.42
2669 3000 3.706086 GGGGTTTATTGCCATGAATCAGT 59.294 43.478 0.00 0.00 0.00 3.41
2715 3046 5.072741 AGCTGCCTGTATTATGGTTTATGG 58.927 41.667 0.00 0.00 0.00 2.74
2728 3059 0.112606 TTTATGGTTTGGCCGTGGGA 59.887 50.000 0.00 0.00 41.21 4.37
2734 3065 1.072505 TTTGGCCGTGGGACTTCTC 59.927 57.895 0.00 0.00 0.00 2.87
2740 3071 1.941668 GCCGTGGGACTTCTCTTTCTG 60.942 57.143 0.00 0.00 0.00 3.02
2756 3087 5.854431 CTTTCTGTCTTGAAAGCTACTCC 57.146 43.478 4.41 0.00 43.95 3.85
2758 3089 2.891580 TCTGTCTTGAAAGCTACTCCGT 59.108 45.455 0.00 0.00 0.00 4.69
2760 3091 2.364324 TGTCTTGAAAGCTACTCCGTGT 59.636 45.455 0.00 0.00 0.00 4.49
2761 3092 2.987821 GTCTTGAAAGCTACTCCGTGTC 59.012 50.000 0.00 0.00 0.00 3.67
2762 3093 2.626266 TCTTGAAAGCTACTCCGTGTCA 59.374 45.455 0.00 0.00 0.00 3.58
2796 3139 1.214589 CGGAAGTCCACCTACCGTG 59.785 63.158 0.00 0.00 42.62 4.94
2808 3151 1.742900 CTACCGTGTCAAGATGCGCG 61.743 60.000 0.00 0.00 38.21 6.86
2821 3164 3.995669 GCGCGCTGTTCAACGTGA 61.996 61.111 26.67 0.00 42.13 4.35
2886 3229 4.694233 CCACTGCTGCGCTGAGGT 62.694 66.667 19.32 12.05 34.69 3.85
2887 3230 3.420606 CACTGCTGCGCTGAGGTG 61.421 66.667 19.32 19.16 0.00 4.00
2888 3231 3.619767 ACTGCTGCGCTGAGGTGA 61.620 61.111 19.32 0.00 0.00 4.02
2889 3232 2.814341 CTGCTGCGCTGAGGTGAG 60.814 66.667 19.32 0.77 0.00 3.51
2891 3234 4.756458 GCTGCGCTGAGGTGAGCT 62.756 66.667 19.32 0.00 36.77 4.09
2892 3235 2.814341 CTGCGCTGAGGTGAGCTG 60.814 66.667 9.73 0.00 36.77 4.24
2911 3254 4.035102 GGTGGGGAGGTGTGCTCC 62.035 72.222 0.00 0.00 40.15 4.70
2960 3306 3.801050 CGGCTCTGACTGAATATGTCTTG 59.199 47.826 0.00 0.00 35.63 3.02
3109 3537 5.763088 ACTAGATATGTACATGCGTGTGAG 58.237 41.667 21.92 8.55 39.39 3.51
3150 3580 4.338118 TGCCTCATTTTGAACGAGTTTCTT 59.662 37.500 0.00 0.00 34.97 2.52
3160 3590 2.893637 ACGAGTTTCTTGCGCATATCT 58.106 42.857 12.75 5.84 0.00 1.98
3169 3599 4.908736 TCTTGCGCATATCTTTGCTTTAC 58.091 39.130 12.75 0.00 40.54 2.01
3170 3600 4.635765 TCTTGCGCATATCTTTGCTTTACT 59.364 37.500 12.75 0.00 40.54 2.24
3171 3601 4.963276 TGCGCATATCTTTGCTTTACTT 57.037 36.364 5.66 0.00 40.54 2.24
3172 3602 4.661125 TGCGCATATCTTTGCTTTACTTG 58.339 39.130 5.66 0.00 40.54 3.16
3173 3603 4.394610 TGCGCATATCTTTGCTTTACTTGA 59.605 37.500 5.66 0.00 40.54 3.02
3174 3604 4.730521 GCGCATATCTTTGCTTTACTTGAC 59.269 41.667 0.30 0.00 40.54 3.18
3175 3605 5.266242 CGCATATCTTTGCTTTACTTGACC 58.734 41.667 0.00 0.00 40.54 4.02
3176 3606 5.163764 CGCATATCTTTGCTTTACTTGACCA 60.164 40.000 0.00 0.00 40.54 4.02
3177 3607 6.458751 CGCATATCTTTGCTTTACTTGACCAT 60.459 38.462 0.00 0.00 40.54 3.55
3178 3608 7.260603 GCATATCTTTGCTTTACTTGACCATT 58.739 34.615 0.00 0.00 39.57 3.16
3179 3609 7.761249 GCATATCTTTGCTTTACTTGACCATTT 59.239 33.333 0.00 0.00 39.57 2.32
3270 3706 0.665298 GCTGGGCGGATCTGAATTTC 59.335 55.000 5.48 0.00 0.00 2.17
3415 3851 4.042187 TCTCTTTTCTTCAGAGGGAAAGGG 59.958 45.833 12.35 9.72 38.71 3.95
3474 3912 4.562425 CACGCCACCACCACCACT 62.562 66.667 0.00 0.00 0.00 4.00
3557 3996 5.524281 GCAGAACAAGAGTAAAGTATAGCCC 59.476 44.000 0.00 0.00 0.00 5.19
3587 4026 9.056005 TGCTAGATATTTTCGTTCATAGCAATT 57.944 29.630 0.00 0.00 40.84 2.32
3638 4080 8.485976 ACTGTTCTGTTCTTAATCTCTTATGC 57.514 34.615 0.00 0.00 0.00 3.14
3647 4090 9.601971 GTTCTTAATCTCTTATGCTAGAGTACG 57.398 37.037 0.00 0.00 41.91 3.67
3684 4127 0.392193 CCATCTGACCACCTGTGCTC 60.392 60.000 0.00 0.00 0.00 4.26
4159 4623 3.991051 CACCGTCGCCACCACTCT 61.991 66.667 0.00 0.00 0.00 3.24
4390 4854 2.672651 TACAACGACCGGGAGCGA 60.673 61.111 18.35 0.00 0.00 4.93
4432 4896 4.314440 GGAGTGCTGGCCGTGTCA 62.314 66.667 0.00 0.00 0.00 3.58
4516 4980 2.097038 GCTGCTGATCGTGAACGCT 61.097 57.895 0.00 0.00 39.60 5.07
4597 5061 4.767255 GAGTGGGACTGGCTGCGG 62.767 72.222 0.00 0.00 0.00 5.69
4871 5338 1.202651 ACAGCAACAAGTTCTAGCCGT 60.203 47.619 0.00 0.00 0.00 5.68
4886 5353 0.652592 GCCGTCAAGATCCATCAACG 59.347 55.000 0.00 0.00 32.79 4.10
5015 5483 4.338682 AGAAGACTACTATTACCGTGCCAG 59.661 45.833 0.00 0.00 0.00 4.85
5093 5561 6.258068 CAGTTCCGTCTTTACTTTTTCTCTGT 59.742 38.462 0.00 0.00 0.00 3.41
5098 5566 6.419771 CGTCTTTACTTTTTCTCTGTGTTCC 58.580 40.000 0.00 0.00 0.00 3.62
5124 5592 2.361230 GCTTAGGTTTGGCCGGCT 60.361 61.111 28.56 7.78 43.70 5.52
5318 5796 8.037758 AGTTTAGATGATGTTCTTTCTCGTGAT 58.962 33.333 0.00 0.00 0.00 3.06
5322 5800 8.103948 AGATGATGTTCTTTCTCGTGATTTTT 57.896 30.769 0.00 0.00 0.00 1.94
5323 5801 9.219603 AGATGATGTTCTTTCTCGTGATTTTTA 57.780 29.630 0.00 0.00 0.00 1.52
5325 5803 9.994432 ATGATGTTCTTTCTCGTGATTTTTATC 57.006 29.630 0.00 0.00 0.00 1.75
5326 5804 9.219603 TGATGTTCTTTCTCGTGATTTTTATCT 57.780 29.630 0.00 0.00 0.00 1.98
5327 5805 9.695884 GATGTTCTTTCTCGTGATTTTTATCTC 57.304 33.333 0.00 0.00 0.00 2.75
5328 5806 7.729836 TGTTCTTTCTCGTGATTTTTATCTCG 58.270 34.615 0.00 0.00 38.46 4.04
5332 5810 7.485277 TCTTTCTCGTGATTTTTATCTCGTCTC 59.515 37.037 8.76 0.00 38.32 3.36
5333 5811 6.438259 TCTCGTGATTTTTATCTCGTCTCT 57.562 37.500 8.76 0.00 38.32 3.10
5335 5813 5.340803 TCGTGATTTTTATCTCGTCTCTGG 58.659 41.667 8.76 0.00 38.32 3.86
5336 5814 5.124936 TCGTGATTTTTATCTCGTCTCTGGA 59.875 40.000 8.76 0.00 38.32 3.86
5337 5815 5.805486 CGTGATTTTTATCTCGTCTCTGGAA 59.195 40.000 0.00 0.00 34.18 3.53
5338 5816 6.310467 CGTGATTTTTATCTCGTCTCTGGAAA 59.690 38.462 0.00 0.00 34.18 3.13
5339 5817 7.010552 CGTGATTTTTATCTCGTCTCTGGAAAT 59.989 37.037 0.00 0.00 34.18 2.17
5340 5818 8.119226 GTGATTTTTATCTCGTCTCTGGAAATG 58.881 37.037 0.00 0.00 0.00 2.32
5341 5819 6.985188 TTTTTATCTCGTCTCTGGAAATGG 57.015 37.500 0.00 0.00 0.00 3.16
5342 5820 5.932619 TTTATCTCGTCTCTGGAAATGGA 57.067 39.130 0.00 0.00 0.00 3.41
5345 5825 2.432146 TCTCGTCTCTGGAAATGGATGG 59.568 50.000 0.00 0.00 0.00 3.51
5364 5844 1.069596 TTGCTCGCTTGCTCTGTCA 59.930 52.632 0.00 0.00 0.00 3.58
5366 5846 0.947660 TGCTCGCTTGCTCTGTCAAG 60.948 55.000 7.64 7.64 44.63 3.02
5377 5857 2.843701 CTCTGTCAAGCAAGGTTGTCT 58.156 47.619 11.26 0.00 0.00 3.41
5382 5862 3.067833 GTCAAGCAAGGTTGTCTACTCC 58.932 50.000 11.26 0.00 0.00 3.85
5385 5865 1.272769 AGCAAGGTTGTCTACTCCGTC 59.727 52.381 0.00 0.00 0.00 4.79
5386 5866 1.672145 GCAAGGTTGTCTACTCCGTCC 60.672 57.143 0.00 0.00 0.00 4.79
5387 5867 1.067071 CAAGGTTGTCTACTCCGTCCC 60.067 57.143 0.00 0.00 0.00 4.46
5388 5868 0.964358 AGGTTGTCTACTCCGTCCCG 60.964 60.000 0.00 0.00 0.00 5.14
5389 5869 1.153881 GTTGTCTACTCCGTCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
5390 5870 2.693762 TTGTCTACTCCGTCCCGCG 61.694 63.158 0.00 0.00 40.95 6.46
5421 5901 2.031930 GGAACGAGATCCTCTGACGTAC 59.968 54.545 0.00 0.00 36.50 3.67
5506 5987 3.756434 GGCTAAACACTGGCAGAACATAA 59.244 43.478 23.66 0.82 0.00 1.90
5554 6035 0.257039 GGCCCAGTCCAATGAGATGT 59.743 55.000 0.00 0.00 0.00 3.06
5558 6039 2.619849 CCCAGTCCAATGAGATGTTGCT 60.620 50.000 0.00 0.00 0.00 3.91
5566 6047 3.724508 ATGAGATGTTGCTAGGACGAG 57.275 47.619 0.00 0.00 0.00 4.18
5590 6072 2.640989 CACGAGGTCGACGGAACA 59.359 61.111 9.92 0.00 43.02 3.18
5642 6124 5.392585 GCTCATCGATTTGTACGTAAATTGC 59.607 40.000 0.00 0.00 33.39 3.56
5681 6163 5.927954 TTTGCCATCTTGAAATTTGCTTC 57.072 34.783 0.00 0.00 0.00 3.86
5754 6236 9.039870 TGAATTCGATAAATTTTTGTGCAACTT 57.960 25.926 0.00 0.00 37.70 2.66
5757 6239 7.171447 TCGATAAATTTTTGTGCAACTTTGG 57.829 32.000 0.00 0.00 38.04 3.28
5775 6257 6.942976 ACTTTGGGTCGATCTTGTAATTAGA 58.057 36.000 0.00 0.00 0.00 2.10
5777 6259 6.540438 TTGGGTCGATCTTGTAATTAGAGT 57.460 37.500 0.00 0.00 0.00 3.24
5791 6273 1.171308 TAGAGTAACTCCAACGCGCT 58.829 50.000 5.73 0.00 0.00 5.92
5792 6274 1.171308 AGAGTAACTCCAACGCGCTA 58.829 50.000 5.73 0.00 0.00 4.26
5831 6313 3.498777 TGTATCCGTTTGCATCGAAACAA 59.501 39.130 12.28 0.00 35.86 2.83
5847 6329 1.741528 ACAAACGAAAACACCGGTCT 58.258 45.000 2.59 0.00 0.00 3.85
5856 6338 2.030490 AACACCGGTCTAACGTGCCA 62.030 55.000 2.59 0.00 0.00 4.92
5859 6341 1.005394 CCGGTCTAACGTGCCAACT 60.005 57.895 0.00 0.00 0.00 3.16
5925 6408 0.613012 GCCCAATCTGGCCACTTCTT 60.613 55.000 0.00 0.00 46.11 2.52
5931 6414 2.357034 TGGCCACTTCTTCGTCGC 60.357 61.111 0.00 0.00 0.00 5.19
5932 6415 2.048127 GGCCACTTCTTCGTCGCT 60.048 61.111 0.00 0.00 0.00 4.93
5951 6434 1.077429 GTCCAATCTGGCCACCCTC 60.077 63.158 0.00 0.00 37.47 4.30
5974 6457 3.691342 CTCCCTCACCGGCGACAA 61.691 66.667 9.30 0.00 0.00 3.18
5990 6473 3.808174 GCGACAACAAACCCTATCTATCC 59.192 47.826 0.00 0.00 0.00 2.59
5991 6474 4.377897 CGACAACAAACCCTATCTATCCC 58.622 47.826 0.00 0.00 0.00 3.85
6010 6493 2.867472 CGTGTTCGCCATGGGTTC 59.133 61.111 15.13 0.00 0.00 3.62
6050 6533 2.032981 CAAGGCCAAGTTTGACGCT 58.967 52.632 5.01 0.00 0.00 5.07
6051 6534 0.385390 CAAGGCCAAGTTTGACGCTT 59.615 50.000 5.01 0.00 0.00 4.68
6111 6594 2.125912 CCTTCGCGCTAGTGCTGT 60.126 61.111 24.83 0.00 36.97 4.40
6116 6599 1.443702 CGCGCTAGTGCTGTGTGTA 60.444 57.895 24.83 0.00 36.97 2.90
6126 6609 1.489560 GCTGTGTGTAGGGAGGGGTT 61.490 60.000 0.00 0.00 0.00 4.11
6128 6611 1.002502 GTGTGTAGGGAGGGGTTGC 60.003 63.158 0.00 0.00 0.00 4.17
6141 6624 4.947147 GTTGCTGGCCACGGGACA 62.947 66.667 0.00 0.00 39.14 4.02
6161 6644 2.671070 CTCCACTTCCCGGTGCAT 59.329 61.111 0.00 0.00 36.03 3.96
6164 6647 3.499737 CACTTCCCGGTGCATCGC 61.500 66.667 15.51 0.00 0.00 4.58
6165 6648 3.706373 ACTTCCCGGTGCATCGCT 61.706 61.111 15.51 0.00 0.00 4.93
6166 6649 2.892425 CTTCCCGGTGCATCGCTC 60.892 66.667 15.51 0.00 0.00 5.03
6167 6650 4.812476 TTCCCGGTGCATCGCTCG 62.812 66.667 15.51 3.19 0.00 5.03
6176 6659 3.857854 CATCGCTCGCTGCACCAC 61.858 66.667 0.00 0.00 43.06 4.16
6177 6660 4.074526 ATCGCTCGCTGCACCACT 62.075 61.111 0.00 0.00 43.06 4.00
6178 6661 3.997064 ATCGCTCGCTGCACCACTC 62.997 63.158 0.00 0.00 43.06 3.51
6181 6664 2.566529 CTCGCTGCACCACTCGTA 59.433 61.111 0.00 0.00 0.00 3.43
6182 6665 1.139734 CTCGCTGCACCACTCGTAT 59.860 57.895 0.00 0.00 0.00 3.06
6183 6666 0.458543 CTCGCTGCACCACTCGTATT 60.459 55.000 0.00 0.00 0.00 1.89
6184 6667 0.735978 TCGCTGCACCACTCGTATTG 60.736 55.000 0.00 0.00 0.00 1.90
6185 6668 1.014044 CGCTGCACCACTCGTATTGT 61.014 55.000 0.00 0.00 0.00 2.71
6186 6669 0.721718 GCTGCACCACTCGTATTGTC 59.278 55.000 0.00 0.00 0.00 3.18
6187 6670 0.992072 CTGCACCACTCGTATTGTCG 59.008 55.000 0.00 0.00 0.00 4.35
6188 6671 1.011968 TGCACCACTCGTATTGTCGC 61.012 55.000 0.00 0.00 0.00 5.19
6189 6672 1.988409 CACCACTCGTATTGTCGCG 59.012 57.895 0.00 0.00 0.00 5.87
6190 6673 1.804326 ACCACTCGTATTGTCGCGC 60.804 57.895 0.00 0.00 0.00 6.86
6191 6674 2.608204 CACTCGTATTGTCGCGCG 59.392 61.111 26.76 26.76 0.00 6.86
6192 6675 2.150218 CACTCGTATTGTCGCGCGT 61.150 57.895 30.98 13.33 0.00 6.01
6193 6676 1.866496 ACTCGTATTGTCGCGCGTC 60.866 57.895 30.98 25.30 0.00 5.19
6194 6677 1.866059 CTCGTATTGTCGCGCGTCA 60.866 57.895 30.98 27.89 0.00 4.35
6195 6678 2.051579 CTCGTATTGTCGCGCGTCAC 62.052 60.000 28.24 21.03 0.00 3.67
6196 6679 2.150218 CGTATTGTCGCGCGTCACT 61.150 57.895 28.24 24.47 0.00 3.41
6197 6680 1.340465 GTATTGTCGCGCGTCACTG 59.660 57.895 28.24 0.00 0.00 3.66
6198 6681 1.081041 TATTGTCGCGCGTCACTGT 60.081 52.632 28.24 18.81 0.00 3.55
6199 6682 1.068832 TATTGTCGCGCGTCACTGTC 61.069 55.000 28.24 11.96 0.00 3.51
6208 6691 3.986006 GTCACTGTCGTGGCCCGA 61.986 66.667 11.66 11.66 45.00 5.14
6215 6698 2.986290 TCGTGGCCCGATGTCAAT 59.014 55.556 11.66 0.00 41.60 2.57
6216 6699 1.153449 TCGTGGCCCGATGTCAATC 60.153 57.895 11.66 0.00 41.60 2.67
6217 6700 1.153369 CGTGGCCCGATGTCAATCT 60.153 57.895 0.00 0.00 39.56 2.40
6218 6701 1.154205 CGTGGCCCGATGTCAATCTC 61.154 60.000 0.00 0.00 39.56 2.75
6219 6702 0.179000 GTGGCCCGATGTCAATCTCT 59.821 55.000 0.00 0.00 0.00 3.10
6220 6703 0.465705 TGGCCCGATGTCAATCTCTC 59.534 55.000 0.00 0.00 0.00 3.20
6221 6704 0.250081 GGCCCGATGTCAATCTCTCC 60.250 60.000 0.00 0.00 0.00 3.71
6222 6705 0.250081 GCCCGATGTCAATCTCTCCC 60.250 60.000 0.00 0.00 0.00 4.30
6223 6706 1.123077 CCCGATGTCAATCTCTCCCA 58.877 55.000 0.00 0.00 0.00 4.37
6224 6707 1.202580 CCCGATGTCAATCTCTCCCAC 60.203 57.143 0.00 0.00 0.00 4.61
6225 6708 1.536922 CCGATGTCAATCTCTCCCACG 60.537 57.143 0.00 0.00 0.00 4.94
6226 6709 1.135139 CGATGTCAATCTCTCCCACGT 59.865 52.381 0.00 0.00 0.00 4.49
6227 6710 2.417379 CGATGTCAATCTCTCCCACGTT 60.417 50.000 0.00 0.00 0.00 3.99
6228 6711 2.743636 TGTCAATCTCTCCCACGTTC 57.256 50.000 0.00 0.00 0.00 3.95
6229 6712 2.248248 TGTCAATCTCTCCCACGTTCT 58.752 47.619 0.00 0.00 0.00 3.01
6230 6713 2.029020 TGTCAATCTCTCCCACGTTCTG 60.029 50.000 0.00 0.00 0.00 3.02
6231 6714 1.066858 TCAATCTCTCCCACGTTCTGC 60.067 52.381 0.00 0.00 0.00 4.26
6232 6715 0.976641 AATCTCTCCCACGTTCTGCA 59.023 50.000 0.00 0.00 0.00 4.41
6233 6716 0.534412 ATCTCTCCCACGTTCTGCAG 59.466 55.000 7.63 7.63 0.00 4.41
6234 6717 1.079543 CTCTCCCACGTTCTGCAGG 60.080 63.158 15.13 0.00 0.00 4.85
6235 6718 1.821061 CTCTCCCACGTTCTGCAGGT 61.821 60.000 15.13 0.27 0.00 4.00
6236 6719 1.071471 CTCCCACGTTCTGCAGGTT 59.929 57.895 15.13 0.00 0.00 3.50
6237 6720 1.227823 TCCCACGTTCTGCAGGTTG 60.228 57.895 15.13 6.16 0.00 3.77
6238 6721 1.227823 CCCACGTTCTGCAGGTTGA 60.228 57.895 15.13 0.00 0.00 3.18
6239 6722 1.507141 CCCACGTTCTGCAGGTTGAC 61.507 60.000 15.13 7.08 0.00 3.18
6240 6723 1.507141 CCACGTTCTGCAGGTTGACC 61.507 60.000 15.13 0.00 0.00 4.02
6241 6724 1.227853 ACGTTCTGCAGGTTGACCC 60.228 57.895 15.13 0.00 36.42 4.46
6242 6725 1.966451 CGTTCTGCAGGTTGACCCC 60.966 63.158 15.13 0.00 36.42 4.95
6243 6726 1.603739 GTTCTGCAGGTTGACCCCC 60.604 63.158 15.13 0.00 36.42 5.40
6244 6727 2.081787 TTCTGCAGGTTGACCCCCA 61.082 57.895 15.13 0.00 36.42 4.96
6245 6728 2.282462 CTGCAGGTTGACCCCCAC 60.282 66.667 5.57 0.00 36.42 4.61
6246 6729 2.776526 TGCAGGTTGACCCCCACT 60.777 61.111 0.00 0.00 36.42 4.00
6247 6730 2.034221 GCAGGTTGACCCCCACTC 59.966 66.667 0.00 0.00 36.42 3.51
6248 6731 2.347490 CAGGTTGACCCCCACTCG 59.653 66.667 0.00 0.00 36.42 4.18
6249 6732 2.122547 AGGTTGACCCCCACTCGT 60.123 61.111 0.00 0.00 36.42 4.18
6250 6733 1.156803 AGGTTGACCCCCACTCGTA 59.843 57.895 0.00 0.00 36.42 3.43
6251 6734 1.190178 AGGTTGACCCCCACTCGTAC 61.190 60.000 0.00 0.00 36.42 3.67
6252 6735 1.190178 GGTTGACCCCCACTCGTACT 61.190 60.000 0.00 0.00 0.00 2.73
6253 6736 1.549203 GTTGACCCCCACTCGTACTA 58.451 55.000 0.00 0.00 0.00 1.82
6254 6737 1.203287 GTTGACCCCCACTCGTACTAC 59.797 57.143 0.00 0.00 0.00 2.73
6255 6738 0.323725 TGACCCCCACTCGTACTACC 60.324 60.000 0.00 0.00 0.00 3.18
6256 6739 1.379044 ACCCCCACTCGTACTACCG 60.379 63.158 0.00 0.00 0.00 4.02
6257 6740 2.779033 CCCCCACTCGTACTACCGC 61.779 68.421 0.00 0.00 0.00 5.68
6258 6741 2.406401 CCCACTCGTACTACCGCG 59.594 66.667 0.00 0.00 0.00 6.46
6259 6742 2.401766 CCCACTCGTACTACCGCGT 61.402 63.158 4.92 0.00 0.00 6.01
6260 6743 1.061570 CCACTCGTACTACCGCGTC 59.938 63.158 4.92 0.00 0.00 5.19
6261 6744 1.296432 CACTCGTACTACCGCGTCG 60.296 63.158 4.92 0.00 0.00 5.12
6262 6745 1.738099 ACTCGTACTACCGCGTCGT 60.738 57.895 4.92 0.00 0.00 4.34
6263 6746 1.012889 CTCGTACTACCGCGTCGTC 60.013 63.158 4.92 0.00 0.00 4.20
6264 6747 2.348988 CGTACTACCGCGTCGTCG 60.349 66.667 4.92 0.00 40.37 5.12
6265 6748 2.778679 GTACTACCGCGTCGTCGT 59.221 61.111 4.92 1.36 39.49 4.34
6266 6749 1.578618 GTACTACCGCGTCGTCGTG 60.579 63.158 4.92 8.65 45.59 4.35
6267 6750 3.367051 TACTACCGCGTCGTCGTGC 62.367 63.158 10.11 0.00 44.80 5.34
6268 6751 4.746951 CTACCGCGTCGTCGTGCA 62.747 66.667 10.11 0.00 44.80 4.57
6269 6752 4.746951 TACCGCGTCGTCGTGCAG 62.747 66.667 10.11 0.56 44.80 4.41
6274 6757 3.168604 CGTCGTCGTGCAGCAGAG 61.169 66.667 0.00 0.00 0.00 3.35
6275 6758 2.049985 GTCGTCGTGCAGCAGAGT 60.050 61.111 0.00 0.00 0.00 3.24
6276 6759 2.083522 GTCGTCGTGCAGCAGAGTC 61.084 63.158 0.00 0.00 0.00 3.36
6277 6760 3.168604 CGTCGTGCAGCAGAGTCG 61.169 66.667 0.00 0.00 0.00 4.18
6278 6761 3.474034 GTCGTGCAGCAGAGTCGC 61.474 66.667 0.00 0.00 0.00 5.19
6279 6762 3.674523 TCGTGCAGCAGAGTCGCT 61.675 61.111 0.00 4.01 45.21 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.548818 GGCATAGCTTCTACCATTTTGCG 60.549 47.826 0.00 0.00 0.00 4.85
7 8 4.641989 AGTGGCATAGCTTCTACCATTTTG 59.358 41.667 0.00 0.00 31.99 2.44
74 75 5.298527 TCTCAGGTCTATGTAACATACGGTG 59.701 44.000 0.00 0.00 0.00 4.94
116 117 4.551388 TGAAATATTGCACGTGGTTTTCC 58.449 39.130 18.88 0.00 41.14 3.13
387 389 7.360113 TCCTAGACATTGTATAGATGTTGCA 57.640 36.000 17.85 0.00 37.83 4.08
408 410 5.941146 AATCTAGTACTCCCTCTGATCCT 57.059 43.478 0.00 0.00 0.00 3.24
410 412 9.528489 AATCTTAATCTAGTACTCCCTCTGATC 57.472 37.037 0.00 0.00 0.00 2.92
417 419 9.747293 GTGTTGTAATCTTAATCTAGTACTCCC 57.253 37.037 0.00 0.00 0.00 4.30
443 445 5.637006 TTTTTCTGTGGGGATGTTTATCG 57.363 39.130 0.00 0.00 33.98 2.92
529 533 0.518636 CACGGTGCAAACATCTCCAG 59.481 55.000 0.00 0.00 0.00 3.86
581 587 6.410942 AATAGCAGATAAAAAGGAATGCCC 57.589 37.500 0.00 0.00 34.24 5.36
698 704 1.246737 GCCTTTCCCCTGCACAGAAG 61.247 60.000 0.00 0.00 0.00 2.85
724 730 1.609208 AGCGGCAATTTTGTCAGTCT 58.391 45.000 1.45 0.00 31.86 3.24
1187 1198 3.714391 AGGAATTAACCATACGAGCGAC 58.286 45.455 0.00 0.00 0.00 5.19
1236 1247 2.202851 AGCAGAGCAGATTCCGCG 60.203 61.111 0.00 0.00 0.00 6.46
1364 1375 2.754664 AAAACAGCAGCCCCTCGAGG 62.755 60.000 25.36 25.36 0.00 4.63
1371 1382 1.536073 GGGGAGAAAAACAGCAGCCC 61.536 60.000 0.00 0.00 0.00 5.19
1383 1394 1.380302 GGCAGCAAAGAGGGGAGAA 59.620 57.895 0.00 0.00 0.00 2.87
1385 1396 2.437359 CGGCAGCAAAGAGGGGAG 60.437 66.667 0.00 0.00 0.00 4.30
1449 1460 2.722201 GGTCGGAGGTAGGTGCAGG 61.722 68.421 0.00 0.00 0.00 4.85
1515 1772 0.107703 TCTAATCCTGCCCGTTGCTG 60.108 55.000 0.00 0.00 42.00 4.41
1618 1875 3.511362 TGCCATCCGCACCAATATT 57.489 47.368 0.00 0.00 44.64 1.28
1753 2011 8.940924 GCTTTTCAAACAAAACTAGTACTAACG 58.059 33.333 3.76 0.00 0.00 3.18
1754 2012 9.999009 AGCTTTTCAAACAAAACTAGTACTAAC 57.001 29.630 3.76 0.00 0.00 2.34
1756 2014 8.126700 GCAGCTTTTCAAACAAAACTAGTACTA 58.873 33.333 1.89 1.89 0.00 1.82
1757 2015 6.972901 GCAGCTTTTCAAACAAAACTAGTACT 59.027 34.615 0.00 0.00 0.00 2.73
1758 2016 6.750039 TGCAGCTTTTCAAACAAAACTAGTAC 59.250 34.615 0.00 0.00 0.00 2.73
1759 2017 6.750039 GTGCAGCTTTTCAAACAAAACTAGTA 59.250 34.615 0.00 0.00 0.00 1.82
1760 2018 5.576774 GTGCAGCTTTTCAAACAAAACTAGT 59.423 36.000 0.00 0.00 0.00 2.57
1761 2019 5.005682 GGTGCAGCTTTTCAAACAAAACTAG 59.994 40.000 9.07 0.00 0.00 2.57
1801 2059 6.811170 TCTGTTTGTGTTTCTCAATGAAAACC 59.189 34.615 13.98 8.90 45.10 3.27
1802 2060 7.810766 TCTGTTTGTGTTTCTCAATGAAAAC 57.189 32.000 11.40 11.40 45.10 2.43
1861 2163 4.141959 ACCCGGGAAAAAGATATGCAATTG 60.142 41.667 32.02 0.00 0.00 2.32
1868 2170 5.446260 AGTGTTACCCGGGAAAAAGATAT 57.554 39.130 32.02 2.92 0.00 1.63
1869 2171 4.914177 AGTGTTACCCGGGAAAAAGATA 57.086 40.909 32.02 3.51 0.00 1.98
1870 2172 3.801307 AGTGTTACCCGGGAAAAAGAT 57.199 42.857 32.02 4.78 0.00 2.40
1871 2173 4.703379 TTAGTGTTACCCGGGAAAAAGA 57.297 40.909 32.02 14.04 0.00 2.52
1872 2174 5.336134 CCAATTAGTGTTACCCGGGAAAAAG 60.336 44.000 32.02 0.00 0.00 2.27
1874 2176 4.080687 CCAATTAGTGTTACCCGGGAAAA 58.919 43.478 32.02 18.54 0.00 2.29
1880 2182 2.413310 AGGCCAATTAGTGTTACCCG 57.587 50.000 5.01 0.00 0.00 5.28
1881 2183 4.083565 TCAAAGGCCAATTAGTGTTACCC 58.916 43.478 5.01 0.00 0.00 3.69
1904 2206 5.620206 TCTAAACTGAAAGATTGCCTGTCA 58.380 37.500 0.00 0.00 36.79 3.58
1963 2270 9.121769 CGTGCTTCGTTGGAAAAAGAGATTTTC 62.122 40.741 5.34 5.34 43.47 2.29
2293 2613 1.406539 CCAAATATTGCGCAGGCTCTT 59.593 47.619 11.31 0.00 40.82 2.85
2463 2783 1.134670 CCTACAGGGCAAGTACAGAGC 60.135 57.143 0.00 0.00 0.00 4.09
2464 2784 2.969628 CCTACAGGGCAAGTACAGAG 57.030 55.000 0.00 0.00 0.00 3.35
2530 2855 2.320781 CGTGATTAGGAGGAGGACCAT 58.679 52.381 0.00 0.00 38.94 3.55
2575 2906 0.177141 TGGATTACACGGCTGTAGGC 59.823 55.000 0.00 0.00 34.25 3.93
2576 2907 1.202533 CCTGGATTACACGGCTGTAGG 60.203 57.143 0.00 0.00 34.25 3.18
2577 2908 1.202533 CCCTGGATTACACGGCTGTAG 60.203 57.143 0.00 0.00 34.25 2.74
2578 2909 0.828022 CCCTGGATTACACGGCTGTA 59.172 55.000 0.00 0.00 0.00 2.74
2579 2910 1.198759 ACCCTGGATTACACGGCTGT 61.199 55.000 0.00 0.00 0.00 4.40
2580 2911 0.035439 AACCCTGGATTACACGGCTG 60.035 55.000 0.00 0.00 0.00 4.85
2583 2914 2.616842 GCATTAACCCTGGATTACACGG 59.383 50.000 0.00 0.00 0.00 4.94
2610 2941 1.440145 GGACTGGCCTGCTAATTCGC 61.440 60.000 9.95 0.00 0.00 4.70
2621 2952 1.884235 CCGATTGATTAGGACTGGCC 58.116 55.000 0.00 0.00 0.00 5.36
2639 2970 1.452953 GCAATAAACCCCCGCTAGCC 61.453 60.000 9.66 0.00 0.00 3.93
2643 2974 1.042559 CATGGCAATAAACCCCCGCT 61.043 55.000 0.00 0.00 0.00 5.52
2645 2976 1.479709 TTCATGGCAATAAACCCCCG 58.520 50.000 0.00 0.00 0.00 5.73
2669 3000 3.126171 CCGGATTGCGATGTTCAACTTTA 59.874 43.478 0.00 0.00 0.00 1.85
2715 3046 1.228154 AGAAGTCCCACGGCCAAAC 60.228 57.895 2.24 0.00 0.00 2.93
2740 3071 2.987821 GACACGGAGTAGCTTTCAAGAC 59.012 50.000 0.00 0.00 41.61 3.01
2751 3082 1.262417 TGCCATCTTGACACGGAGTA 58.738 50.000 0.00 0.00 41.61 2.59
2753 3084 1.134580 AGATGCCATCTTGACACGGAG 60.135 52.381 0.08 0.00 35.76 4.63
2754 3085 0.904649 AGATGCCATCTTGACACGGA 59.095 50.000 0.08 0.00 35.76 4.69
2755 3086 1.012086 CAGATGCCATCTTGACACGG 58.988 55.000 3.97 0.00 37.58 4.94
2756 3087 2.014335 TCAGATGCCATCTTGACACG 57.986 50.000 3.97 0.00 37.58 4.49
2758 3089 3.200483 CGATTCAGATGCCATCTTGACA 58.800 45.455 3.97 0.00 37.58 3.58
2760 3091 2.435437 TCCGATTCAGATGCCATCTTGA 59.565 45.455 3.97 3.76 37.58 3.02
2761 3092 2.842457 TCCGATTCAGATGCCATCTTG 58.158 47.619 3.97 1.32 37.58 3.02
2762 3093 3.118112 ACTTCCGATTCAGATGCCATCTT 60.118 43.478 3.97 0.00 37.58 2.40
2796 3139 1.225854 GAACAGCGCGCATCTTGAC 60.226 57.895 35.10 16.97 0.00 3.18
2808 3151 3.109230 GTGATCATCACGTTGAACAGC 57.891 47.619 0.93 0.00 37.67 4.40
2821 3164 1.153568 CGAGGCACCACGTGATCAT 60.154 57.895 19.30 2.57 35.23 2.45
2834 3177 1.197036 GGAACAGCAGTAAAACGAGGC 59.803 52.381 0.00 0.00 0.00 4.70
2885 3228 4.767255 CTCCCCACCGCAGCTCAC 62.767 72.222 0.00 0.00 0.00 3.51
2890 3233 4.704833 CACACCTCCCCACCGCAG 62.705 72.222 0.00 0.00 0.00 5.18
2911 3254 1.305046 ACCTACCACCCCTCGTCTG 60.305 63.158 0.00 0.00 0.00 3.51
2960 3306 1.722636 CCCGCCTCTGTACTACGACC 61.723 65.000 0.00 0.00 0.00 4.79
3089 3517 3.384668 GCTCACACGCATGTACATATCT 58.615 45.455 8.32 0.00 36.72 1.98
3160 3590 6.148948 CGATCAAATGGTCAAGTAAAGCAAA 58.851 36.000 0.00 0.00 0.00 3.68
3173 3603 2.879103 AAGGTGACCGATCAAATGGT 57.121 45.000 0.00 0.00 42.42 3.55
3174 3604 3.815401 GGATAAGGTGACCGATCAAATGG 59.185 47.826 17.56 0.00 36.31 3.16
3175 3605 3.815401 GGGATAAGGTGACCGATCAAATG 59.185 47.826 17.56 0.00 36.31 2.32
3176 3606 3.716872 AGGGATAAGGTGACCGATCAAAT 59.283 43.478 17.56 4.17 36.31 2.32
3177 3607 3.112263 AGGGATAAGGTGACCGATCAAA 58.888 45.455 17.56 0.00 36.31 2.69
3178 3608 2.434336 CAGGGATAAGGTGACCGATCAA 59.566 50.000 17.56 0.00 36.31 2.57
3179 3609 2.039418 CAGGGATAAGGTGACCGATCA 58.961 52.381 17.56 0.00 0.00 2.92
3258 3694 3.303659 GCTGCTAAGCGAAATTCAGATCC 60.304 47.826 0.00 0.00 40.27 3.36
3284 3720 2.202440 CGCAGCTGCTTCACATGC 60.202 61.111 34.22 7.95 39.32 4.06
3365 3801 8.716674 AAAATATTCCTAGATGACATGCCAAT 57.283 30.769 0.00 0.00 0.00 3.16
3472 3910 2.038557 GGGGTGTTATATCATCGCCAGT 59.961 50.000 0.68 0.00 33.93 4.00
3473 3911 2.615493 GGGGGTGTTATATCATCGCCAG 60.615 54.545 20.04 0.00 46.43 4.85
3474 3912 1.349688 GGGGGTGTTATATCATCGCCA 59.650 52.381 20.04 0.00 46.43 5.69
3540 3979 4.694339 CAAGCGGGCTATACTTTACTCTT 58.306 43.478 0.00 0.00 0.00 2.85
3557 3996 5.389642 TGAACGAAAATATCTAGCAAGCG 57.610 39.130 0.00 0.00 0.00 4.68
3588 4030 9.814899 GTATATTCTAGCAGCATGATTCTACAT 57.185 33.333 0.00 0.00 39.69 2.29
3684 4127 3.358707 TGATGCTGCAGACAACAAAAG 57.641 42.857 20.43 0.00 0.00 2.27
4048 4512 0.322277 AGTAGTCGGAGAAGGCGTGA 60.322 55.000 0.00 0.00 39.69 4.35
4390 4854 3.681034 CGTCTGAGATGAAAATCTGGGCT 60.681 47.826 0.00 0.00 0.00 5.19
4432 4896 0.743701 CGAGCTTCAGCAGAGCCAAT 60.744 55.000 0.75 0.00 45.16 3.16
4516 4980 0.842030 AGGTGATCAGGACCAGCCAA 60.842 55.000 0.00 0.00 40.02 4.52
4871 5338 1.278985 AGCACCGTTGATGGATCTTGA 59.721 47.619 0.00 0.00 0.00 3.02
4886 5353 2.029828 TCTGAGTTCTTTCTCGAGCACC 60.030 50.000 7.81 0.00 37.28 5.01
5093 5561 0.242825 CTAAGCCGACGACTGGAACA 59.757 55.000 0.00 0.00 0.00 3.18
5098 5566 1.068474 CAAACCTAAGCCGACGACTG 58.932 55.000 0.00 0.00 0.00 3.51
5293 5768 7.582435 TCACGAGAAAGAACATCATCTAAAC 57.418 36.000 0.00 0.00 0.00 2.01
5294 5769 8.777865 AATCACGAGAAAGAACATCATCTAAA 57.222 30.769 0.00 0.00 0.00 1.85
5295 5770 8.777865 AAATCACGAGAAAGAACATCATCTAA 57.222 30.769 0.00 0.00 0.00 2.10
5297 5772 7.678947 AAAATCACGAGAAAGAACATCATCT 57.321 32.000 0.00 0.00 0.00 2.90
5298 5773 9.994432 ATAAAAATCACGAGAAAGAACATCATC 57.006 29.630 0.00 0.00 0.00 2.92
5300 5775 9.219603 AGATAAAAATCACGAGAAAGAACATCA 57.780 29.630 0.00 0.00 0.00 3.07
5318 5796 6.707290 TCCATTTCCAGAGACGAGATAAAAA 58.293 36.000 0.00 0.00 0.00 1.94
5322 5800 4.281941 CCATCCATTTCCAGAGACGAGATA 59.718 45.833 0.00 0.00 0.00 1.98
5323 5801 3.070734 CCATCCATTTCCAGAGACGAGAT 59.929 47.826 0.00 0.00 0.00 2.75
5325 5803 2.169352 ACCATCCATTTCCAGAGACGAG 59.831 50.000 0.00 0.00 0.00 4.18
5326 5804 2.187958 ACCATCCATTTCCAGAGACGA 58.812 47.619 0.00 0.00 0.00 4.20
5327 5805 2.679837 CAACCATCCATTTCCAGAGACG 59.320 50.000 0.00 0.00 0.00 4.18
5328 5806 2.424956 GCAACCATCCATTTCCAGAGAC 59.575 50.000 0.00 0.00 0.00 3.36
5332 5810 1.402968 CGAGCAACCATCCATTTCCAG 59.597 52.381 0.00 0.00 0.00 3.86
5333 5811 1.462616 CGAGCAACCATCCATTTCCA 58.537 50.000 0.00 0.00 0.00 3.53
5335 5813 1.098050 AGCGAGCAACCATCCATTTC 58.902 50.000 0.00 0.00 0.00 2.17
5336 5814 1.203052 CAAGCGAGCAACCATCCATTT 59.797 47.619 0.00 0.00 0.00 2.32
5337 5815 0.813184 CAAGCGAGCAACCATCCATT 59.187 50.000 0.00 0.00 0.00 3.16
5338 5816 1.660560 GCAAGCGAGCAACCATCCAT 61.661 55.000 0.00 0.00 0.00 3.41
5339 5817 2.334946 GCAAGCGAGCAACCATCCA 61.335 57.895 0.00 0.00 0.00 3.41
5340 5818 1.986575 GAGCAAGCGAGCAACCATCC 61.987 60.000 6.21 0.00 36.85 3.51
5341 5819 1.023513 AGAGCAAGCGAGCAACCATC 61.024 55.000 6.21 0.00 36.85 3.51
5342 5820 1.002868 AGAGCAAGCGAGCAACCAT 60.003 52.632 6.21 0.00 36.85 3.55
5345 5825 1.224069 TGACAGAGCAAGCGAGCAAC 61.224 55.000 6.21 0.40 36.85 4.17
5364 5844 1.692519 ACGGAGTAGACAACCTTGCTT 59.307 47.619 0.00 0.00 41.94 3.91
5366 5846 3.908737 ACGGAGTAGACAACCTTGC 57.091 52.632 0.00 0.00 41.94 4.01
5421 5901 2.808543 GTCCCTCTGCAGTAGTTTGTTG 59.191 50.000 14.67 0.00 0.00 3.33
5528 6009 3.918253 TTGGACTGGGCCGCATCAC 62.918 63.158 0.00 0.00 0.00 3.06
5554 6035 1.269883 TGCGTTTTCTCGTCCTAGCAA 60.270 47.619 0.00 0.00 0.00 3.91
5558 6039 0.592637 TCGTGCGTTTTCTCGTCCTA 59.407 50.000 0.00 0.00 0.00 2.94
5566 6047 1.485943 GTCGACCTCGTGCGTTTTC 59.514 57.895 3.51 0.00 40.80 2.29
5590 6072 3.057033 ACCGTGTTCACTTAAGCTATCGT 60.057 43.478 1.29 0.00 0.00 3.73
5642 6124 3.992427 GGCAAAAGAAAGGCAGAGATTTG 59.008 43.478 0.00 0.00 0.00 2.32
5742 6224 1.819288 TCGACCCAAAGTTGCACAAAA 59.181 42.857 0.00 0.00 0.00 2.44
5754 6236 6.540438 ACTCTAATTACAAGATCGACCCAA 57.460 37.500 0.00 0.00 0.00 4.12
5757 6239 7.861872 GGAGTTACTCTAATTACAAGATCGACC 59.138 40.741 12.41 0.00 0.00 4.79
5775 6257 1.000060 TGTTAGCGCGTTGGAGTTACT 60.000 47.619 8.43 0.00 0.00 2.24
5777 6259 1.269673 TGTGTTAGCGCGTTGGAGTTA 60.270 47.619 8.43 0.00 0.00 2.24
5812 6294 3.305110 GTTTGTTTCGATGCAAACGGAT 58.695 40.909 21.29 0.00 42.93 4.18
5831 6313 1.860326 CGTTAGACCGGTGTTTTCGTT 59.140 47.619 14.63 0.00 0.00 3.85
5847 6329 0.887387 GGGCTTGAGTTGGCACGTTA 60.887 55.000 0.00 0.00 0.00 3.18
5856 6338 3.903090 TGGATTGATTTTGGGCTTGAGTT 59.097 39.130 0.00 0.00 0.00 3.01
5859 6341 2.230992 CGTGGATTGATTTTGGGCTTGA 59.769 45.455 0.00 0.00 0.00 3.02
5925 6408 1.215382 CCAGATTGGACAGCGACGA 59.785 57.895 0.00 0.00 40.96 4.20
5963 6446 2.330041 GGTTTGTTGTCGCCGGTG 59.670 61.111 9.28 9.28 0.00 4.94
5964 6447 2.042404 TAGGGTTTGTTGTCGCCGGT 62.042 55.000 1.90 0.00 0.00 5.28
5966 6449 0.725117 GATAGGGTTTGTTGTCGCCG 59.275 55.000 0.00 0.00 0.00 6.46
5974 6457 1.343465 CGCGGGATAGATAGGGTTTGT 59.657 52.381 0.00 0.00 0.00 2.83
6007 6490 3.518634 TGCCTTTGTTGTTGAAGGAAC 57.481 42.857 6.33 0.00 44.15 3.62
6010 6493 2.483538 CCCTTGCCTTTGTTGTTGAAGG 60.484 50.000 0.00 0.00 44.21 3.46
6111 6594 1.151899 AGCAACCCCTCCCTACACA 60.152 57.895 0.00 0.00 0.00 3.72
6139 6622 3.322466 CCGGGAAGTGGAGCCTGT 61.322 66.667 0.00 0.00 0.00 4.00
6141 6624 3.322466 CACCGGGAAGTGGAGCCT 61.322 66.667 6.32 0.00 33.95 4.58
6147 6630 3.499737 GCGATGCACCGGGAAGTG 61.500 66.667 0.82 0.00 40.88 3.16
6164 6647 0.458543 AATACGAGTGGTGCAGCGAG 60.459 55.000 11.91 4.88 0.00 5.03
6165 6648 0.735978 CAATACGAGTGGTGCAGCGA 60.736 55.000 11.91 0.00 0.00 4.93
6166 6649 1.014044 ACAATACGAGTGGTGCAGCG 61.014 55.000 11.91 0.00 0.00 5.18
6167 6650 0.721718 GACAATACGAGTGGTGCAGC 59.278 55.000 9.47 9.47 0.00 5.25
6168 6651 0.992072 CGACAATACGAGTGGTGCAG 59.008 55.000 0.00 0.00 35.09 4.41
6169 6652 1.011968 GCGACAATACGAGTGGTGCA 61.012 55.000 0.00 0.00 35.09 4.57
6170 6653 1.708027 GCGACAATACGAGTGGTGC 59.292 57.895 0.00 0.00 35.09 5.01
6171 6654 1.988409 CGCGACAATACGAGTGGTG 59.012 57.895 0.00 0.00 35.09 4.17
6172 6655 1.804326 GCGCGACAATACGAGTGGT 60.804 57.895 12.10 0.00 35.70 4.16
6173 6656 2.845739 CGCGCGACAATACGAGTGG 61.846 63.158 28.94 0.00 39.17 4.00
6174 6657 2.051579 GACGCGCGACAATACGAGTG 62.052 60.000 39.36 1.99 42.35 3.51
6175 6658 1.866496 GACGCGCGACAATACGAGT 60.866 57.895 39.36 9.88 44.95 4.18
6176 6659 1.866059 TGACGCGCGACAATACGAG 60.866 57.895 39.36 2.87 36.29 4.18
6177 6660 2.147749 GTGACGCGCGACAATACGA 61.148 57.895 39.36 10.57 35.09 3.43
6178 6661 2.150218 AGTGACGCGCGACAATACG 61.150 57.895 39.36 4.87 0.00 3.06
6179 6662 1.340465 CAGTGACGCGCGACAATAC 59.660 57.895 39.36 23.73 0.00 1.89
6180 6663 1.068832 GACAGTGACGCGCGACAATA 61.069 55.000 39.36 12.28 0.00 1.90
6181 6664 2.355837 ACAGTGACGCGCGACAAT 60.356 55.556 39.36 32.82 0.00 2.71
6182 6665 3.028019 GACAGTGACGCGCGACAA 61.028 61.111 39.36 18.45 0.00 3.18
6199 6682 1.153369 AGATTGACATCGGGCCACG 60.153 57.895 4.39 6.13 46.11 4.94
6200 6683 0.179000 AGAGATTGACATCGGGCCAC 59.821 55.000 4.39 0.00 34.17 5.01
6201 6684 0.465705 GAGAGATTGACATCGGGCCA 59.534 55.000 4.39 0.00 34.17 5.36
6202 6685 0.250081 GGAGAGATTGACATCGGGCC 60.250 60.000 0.00 0.00 34.17 5.80
6203 6686 0.250081 GGGAGAGATTGACATCGGGC 60.250 60.000 0.00 0.00 34.17 6.13
6204 6687 1.123077 TGGGAGAGATTGACATCGGG 58.877 55.000 0.00 0.00 34.17 5.14
6205 6688 1.536922 CGTGGGAGAGATTGACATCGG 60.537 57.143 0.00 0.00 34.17 4.18
6206 6689 1.135139 ACGTGGGAGAGATTGACATCG 59.865 52.381 0.00 0.00 34.17 3.84
6207 6690 2.969628 ACGTGGGAGAGATTGACATC 57.030 50.000 0.00 0.00 0.00 3.06
6208 6691 2.834549 AGAACGTGGGAGAGATTGACAT 59.165 45.455 0.00 0.00 0.00 3.06
6209 6692 2.029020 CAGAACGTGGGAGAGATTGACA 60.029 50.000 0.00 0.00 0.00 3.58
6210 6693 2.611518 CAGAACGTGGGAGAGATTGAC 58.388 52.381 0.00 0.00 0.00 3.18
6211 6694 1.066858 GCAGAACGTGGGAGAGATTGA 60.067 52.381 0.00 0.00 0.00 2.57
6212 6695 1.338105 TGCAGAACGTGGGAGAGATTG 60.338 52.381 0.00 0.00 0.00 2.67
6213 6696 0.976641 TGCAGAACGTGGGAGAGATT 59.023 50.000 0.00 0.00 0.00 2.40
6214 6697 0.534412 CTGCAGAACGTGGGAGAGAT 59.466 55.000 8.42 0.00 0.00 2.75
6215 6698 1.536073 CCTGCAGAACGTGGGAGAGA 61.536 60.000 17.39 0.00 0.00 3.10
6216 6699 1.079543 CCTGCAGAACGTGGGAGAG 60.080 63.158 17.39 0.00 0.00 3.20
6217 6700 1.407656 AACCTGCAGAACGTGGGAGA 61.408 55.000 17.39 0.00 0.00 3.71
6218 6701 1.071471 AACCTGCAGAACGTGGGAG 59.929 57.895 17.39 0.00 0.00 4.30
6219 6702 1.227823 CAACCTGCAGAACGTGGGA 60.228 57.895 17.39 0.00 0.00 4.37
6220 6703 1.227823 TCAACCTGCAGAACGTGGG 60.228 57.895 17.39 0.00 0.00 4.61
6221 6704 1.507141 GGTCAACCTGCAGAACGTGG 61.507 60.000 17.39 2.03 0.00 4.94
6222 6705 1.507141 GGGTCAACCTGCAGAACGTG 61.507 60.000 17.39 7.40 35.85 4.49
6223 6706 1.227853 GGGTCAACCTGCAGAACGT 60.228 57.895 17.39 0.92 35.85 3.99
6224 6707 1.966451 GGGGTCAACCTGCAGAACG 60.966 63.158 17.39 0.15 40.03 3.95
6225 6708 1.603739 GGGGGTCAACCTGCAGAAC 60.604 63.158 17.39 7.59 40.03 3.01
6226 6709 2.081787 TGGGGGTCAACCTGCAGAA 61.082 57.895 17.39 0.00 40.03 3.02
6227 6710 2.449518 TGGGGGTCAACCTGCAGA 60.450 61.111 17.39 0.00 40.03 4.26
6228 6711 2.282462 GTGGGGGTCAACCTGCAG 60.282 66.667 6.78 6.78 40.03 4.41
6229 6712 2.776526 AGTGGGGGTCAACCTGCA 60.777 61.111 0.00 0.00 40.03 4.41
6230 6713 2.034221 GAGTGGGGGTCAACCTGC 59.966 66.667 0.00 0.00 40.03 4.85
6231 6714 1.189524 TACGAGTGGGGGTCAACCTG 61.190 60.000 0.00 0.00 40.03 4.00
6232 6715 1.156803 TACGAGTGGGGGTCAACCT 59.843 57.895 0.00 0.00 40.03 3.50
6233 6716 1.190178 AGTACGAGTGGGGGTCAACC 61.190 60.000 0.00 0.00 39.11 3.77
6234 6717 1.203287 GTAGTACGAGTGGGGGTCAAC 59.797 57.143 0.00 0.00 0.00 3.18
6235 6718 1.549203 GTAGTACGAGTGGGGGTCAA 58.451 55.000 0.00 0.00 0.00 3.18
6236 6719 0.323725 GGTAGTACGAGTGGGGGTCA 60.324 60.000 0.00 0.00 0.00 4.02
6237 6720 1.379642 CGGTAGTACGAGTGGGGGTC 61.380 65.000 0.00 0.00 35.47 4.46
6238 6721 1.379044 CGGTAGTACGAGTGGGGGT 60.379 63.158 0.00 0.00 35.47 4.95
6239 6722 2.779033 GCGGTAGTACGAGTGGGGG 61.779 68.421 0.00 0.00 35.47 5.40
6240 6723 2.803479 GCGGTAGTACGAGTGGGG 59.197 66.667 0.00 0.00 35.47 4.96
6241 6724 2.315038 GACGCGGTAGTACGAGTGGG 62.315 65.000 12.47 5.04 46.47 4.61
6242 6725 1.061570 GACGCGGTAGTACGAGTGG 59.938 63.158 12.47 1.55 46.47 4.00
6243 6726 1.296432 CGACGCGGTAGTACGAGTG 60.296 63.158 12.47 6.39 46.47 3.51
6245 6728 1.012889 GACGACGCGGTAGTACGAG 60.013 63.158 12.47 0.00 39.59 4.18
6246 6729 2.788176 CGACGACGCGGTAGTACGA 61.788 63.158 12.47 0.00 35.47 3.43
6247 6730 2.348988 CGACGACGCGGTAGTACG 60.349 66.667 12.47 8.67 0.00 3.67
6248 6731 1.578618 CACGACGACGCGGTAGTAC 60.579 63.158 12.47 0.00 43.96 2.73
6249 6732 2.778026 CACGACGACGCGGTAGTA 59.222 61.111 12.47 0.00 43.96 1.82
6250 6733 4.748679 GCACGACGACGCGGTAGT 62.749 66.667 12.47 7.13 43.96 2.73
6251 6734 4.746951 TGCACGACGACGCGGTAG 62.747 66.667 12.47 2.16 43.96 3.18
6252 6735 4.746951 CTGCACGACGACGCGGTA 62.747 66.667 12.47 0.00 43.96 4.02
6257 6740 3.168604 CTCTGCTGCACGACGACG 61.169 66.667 5.58 5.58 45.75 5.12
6258 6741 2.049985 ACTCTGCTGCACGACGAC 60.050 61.111 0.00 0.00 0.00 4.34
6259 6742 2.255554 GACTCTGCTGCACGACGA 59.744 61.111 0.00 0.00 0.00 4.20
6260 6743 3.168604 CGACTCTGCTGCACGACG 61.169 66.667 0.00 1.43 0.00 5.12
6261 6744 3.474034 GCGACTCTGCTGCACGAC 61.474 66.667 13.54 2.71 0.00 4.34
6262 6745 3.674523 AGCGACTCTGCTGCACGA 61.675 61.111 13.54 7.84 45.28 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.