Multiple sequence alignment - TraesCS6A01G279500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G279500 chr6A 100.000 3435 0 0 1 3435 507092983 507096417 0.000000e+00 6344.0
1 TraesCS6A01G279500 chr6A 79.577 142 23 4 277 412 532849345 532849204 2.820000e-16 97.1
2 TraesCS6A01G279500 chr6B 89.256 2783 176 64 412 3158 552244630 552247325 0.000000e+00 3369.0
3 TraesCS6A01G279500 chr6D 88.951 2670 150 60 412 3008 366539343 366541940 0.000000e+00 3162.0
4 TraesCS6A01G279500 chr6D 89.346 413 33 4 3024 3435 366543564 366543966 3.060000e-140 508.0
5 TraesCS6A01G279500 chr6D 88.462 182 19 1 1 180 366538996 366539177 5.770000e-53 219.0
6 TraesCS6A01G279500 chr6D 92.500 80 5 1 183 261 366539273 366539352 2.800000e-21 113.0
7 TraesCS6A01G279500 chr6D 79.730 148 14 5 279 413 457640689 457640545 3.650000e-15 93.5
8 TraesCS6A01G279500 chr3D 81.120 768 97 22 1341 2094 574998900 574999633 3.850000e-159 571.0
9 TraesCS6A01G279500 chr3D 85.612 139 20 0 3297 3435 405836500 405836638 2.760000e-31 147.0
10 TraesCS6A01G279500 chr2B 85.276 163 24 0 3273 3435 18101005 18100843 5.900000e-38 169.0
11 TraesCS6A01G279500 chr7A 84.663 163 25 0 3273 3435 54762117 54762279 2.740000e-36 163.0
12 TraesCS6A01G279500 chr7A 94.898 98 3 2 2830 2926 561707747 561707843 5.940000e-33 152.0
13 TraesCS6A01G279500 chr7A 93.023 43 3 0 370 412 726407424 726407382 2.860000e-06 63.9
14 TraesCS6A01G279500 chr7B 95.745 94 2 2 2834 2926 524519515 524519607 2.140000e-32 150.0
15 TraesCS6A01G279500 chr7B 83.436 163 17 7 3275 3435 140655383 140655537 3.570000e-30 143.0
16 TraesCS6A01G279500 chr7B 81.679 131 17 4 287 417 717540466 717540343 6.060000e-18 102.0
17 TraesCS6A01G279500 chr5A 83.537 164 24 2 3273 3435 487944890 487945051 2.140000e-32 150.0
18 TraesCS6A01G279500 chr5A 83.333 162 26 1 3274 3435 119679739 119679579 7.680000e-32 148.0
19 TraesCS6A01G279500 chr5A 86.916 107 11 3 1566 1671 311001481 311001585 2.170000e-22 117.0
20 TraesCS6A01G279500 chr7D 98.795 83 1 0 2841 2923 496097163 496097245 7.680000e-32 148.0
21 TraesCS6A01G279500 chr7D 93.000 100 4 3 2834 2930 496106737 496106836 3.570000e-30 143.0
22 TraesCS6A01G279500 chr7D 92.593 54 4 0 331 384 589859235 589859182 1.020000e-10 78.7
23 TraesCS6A01G279500 chr2A 83.030 165 24 4 3273 3435 716821714 716821876 2.760000e-31 147.0
24 TraesCS6A01G279500 chr2A 92.929 99 3 4 2837 2931 77532869 77532771 1.290000e-29 141.0
25 TraesCS6A01G279500 chr1D 82.927 164 26 2 3273 3435 326223786 326223624 2.760000e-31 147.0
26 TraesCS6A01G279500 chr4D 89.655 116 9 3 2806 2920 7905911 7906024 9.940000e-31 145.0
27 TraesCS6A01G279500 chr4B 92.857 98 4 2 2833 2927 14344272 14344369 4.620000e-29 139.0
28 TraesCS6A01G279500 chr4B 78.431 153 23 7 279 421 20305199 20305047 1.310000e-14 91.6
29 TraesCS6A01G279500 chr1B 76.957 230 50 3 1566 1794 23978521 23978294 1.000000e-25 128.0
30 TraesCS6A01G279500 chr1B 76.991 226 45 6 1566 1788 16216933 16217154 4.660000e-24 122.0
31 TraesCS6A01G279500 chr5D 84.906 106 15 1 1566 1671 241276545 241276649 4.690000e-19 106.0
32 TraesCS6A01G279500 chr4A 83.654 104 16 1 291 394 582439112 582439214 2.820000e-16 97.1
33 TraesCS6A01G279500 chr4A 91.228 57 5 0 278 334 689561365 689561421 1.020000e-10 78.7
34 TraesCS6A01G279500 chr3A 91.667 60 5 0 279 338 673903519 673903460 2.200000e-12 84.2
35 TraesCS6A01G279500 chr1A 90.000 60 6 0 279 338 522238841 522238782 1.020000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G279500 chr6A 507092983 507096417 3434 False 6344.0 6344 100.00000 1 3435 1 chr6A.!!$F1 3434
1 TraesCS6A01G279500 chr6B 552244630 552247325 2695 False 3369.0 3369 89.25600 412 3158 1 chr6B.!!$F1 2746
2 TraesCS6A01G279500 chr6D 366538996 366543966 4970 False 1000.5 3162 89.81475 1 3435 4 chr6D.!!$F1 3434
3 TraesCS6A01G279500 chr3D 574998900 574999633 733 False 571.0 571 81.12000 1341 2094 1 chr3D.!!$F2 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 616 0.459585 CTGCAAGCCAATGGACATGC 60.46 55.0 2.05 10.37 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2443 2625 0.17576 TCAGAGACACCTTATGCCGC 59.824 55.0 0.0 0.0 0.0 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.421501 TGAATGTCAAATTGCATGTTTCTGAC 59.578 34.615 0.00 2.71 0.00 3.51
37 38 3.317711 TCAAATTGCATGTTTCTGACGGT 59.682 39.130 0.00 0.00 0.00 4.83
77 78 4.844349 AAACTGGGTCTGCATATACACT 57.156 40.909 0.00 0.00 0.00 3.55
78 79 4.844349 AACTGGGTCTGCATATACACTT 57.156 40.909 0.00 0.00 0.00 3.16
79 80 4.408182 ACTGGGTCTGCATATACACTTC 57.592 45.455 0.00 0.00 0.00 3.01
80 81 3.774766 ACTGGGTCTGCATATACACTTCA 59.225 43.478 0.00 0.00 0.00 3.02
81 82 4.141846 ACTGGGTCTGCATATACACTTCAG 60.142 45.833 0.00 0.00 0.00 3.02
86 89 7.147567 TGGGTCTGCATATACACTTCAGATAAA 60.148 37.037 0.00 0.00 36.37 1.40
122 125 6.604795 ACATCCAGGAATTTGAACCTATCTTG 59.395 38.462 0.00 0.00 34.87 3.02
123 126 4.949856 TCCAGGAATTTGAACCTATCTTGC 59.050 41.667 0.00 0.00 34.87 4.01
128 131 7.330208 CAGGAATTTGAACCTATCTTGCAAAAG 59.670 37.037 0.00 0.00 34.87 2.27
161 164 6.663944 ACTTAGTTATCATGTCGAAAAGGC 57.336 37.500 0.00 0.00 0.00 4.35
170 173 3.262135 TGTCGAAAAGGCGAAATTCAC 57.738 42.857 0.00 0.00 42.55 3.18
171 174 2.875933 TGTCGAAAAGGCGAAATTCACT 59.124 40.909 0.00 0.00 42.55 3.41
180 183 3.947834 AGGCGAAATTCACTCAAATAGGG 59.052 43.478 0.00 0.00 0.00 3.53
181 184 3.489229 GGCGAAATTCACTCAAATAGGGC 60.489 47.826 0.00 0.00 0.00 5.19
189 285 2.351726 CACTCAAATAGGGCGTACAAGC 59.648 50.000 0.00 0.00 0.00 4.01
195 291 5.353123 TCAAATAGGGCGTACAAGCTTAAAG 59.647 40.000 0.00 0.00 37.29 1.85
197 293 2.973945 AGGGCGTACAAGCTTAAAGAG 58.026 47.619 0.00 0.00 37.29 2.85
263 359 7.478520 AAGTGATCCGAGATAAAATAAACGG 57.521 36.000 0.00 0.00 41.39 4.44
264 360 5.989777 AGTGATCCGAGATAAAATAAACGGG 59.010 40.000 0.00 0.00 40.59 5.28
265 361 5.987347 GTGATCCGAGATAAAATAAACGGGA 59.013 40.000 0.00 0.00 40.59 5.14
266 362 6.145696 GTGATCCGAGATAAAATAAACGGGAG 59.854 42.308 0.00 0.00 40.59 4.30
268 364 5.353938 TCCGAGATAAAATAAACGGGAGTG 58.646 41.667 0.00 0.00 46.69 3.51
269 365 4.025145 CCGAGATAAAATAAACGGGAGTGC 60.025 45.833 0.00 0.00 46.69 4.40
270 366 4.809426 CGAGATAAAATAAACGGGAGTGCT 59.191 41.667 0.00 0.00 46.69 4.40
271 367 5.981315 CGAGATAAAATAAACGGGAGTGCTA 59.019 40.000 0.00 0.00 46.69 3.49
272 368 6.477688 CGAGATAAAATAAACGGGAGTGCTAA 59.522 38.462 0.00 0.00 46.69 3.09
273 369 7.010738 CGAGATAAAATAAACGGGAGTGCTAAA 59.989 37.037 0.00 0.00 46.69 1.85
274 370 8.747538 AGATAAAATAAACGGGAGTGCTAAAT 57.252 30.769 0.00 0.00 46.69 1.40
275 371 8.837389 AGATAAAATAAACGGGAGTGCTAAATC 58.163 33.333 0.00 0.00 46.69 2.17
276 372 8.747538 ATAAAATAAACGGGAGTGCTAAATCT 57.252 30.769 0.00 0.00 46.69 2.40
277 373 7.462571 AAAATAAACGGGAGTGCTAAATCTT 57.537 32.000 0.00 0.00 46.69 2.40
278 374 8.570068 AAAATAAACGGGAGTGCTAAATCTTA 57.430 30.769 0.00 0.00 46.69 2.10
279 375 7.787725 AATAAACGGGAGTGCTAAATCTTAG 57.212 36.000 0.00 0.00 46.69 2.18
280 376 4.820894 AACGGGAGTGCTAAATCTTAGT 57.179 40.909 0.00 0.00 46.69 2.24
281 377 4.388378 ACGGGAGTGCTAAATCTTAGTC 57.612 45.455 0.00 0.00 44.82 2.59
282 378 4.024670 ACGGGAGTGCTAAATCTTAGTCT 58.975 43.478 0.00 0.00 44.82 3.24
283 379 4.466726 ACGGGAGTGCTAAATCTTAGTCTT 59.533 41.667 0.00 0.00 44.82 3.01
284 380 5.655532 ACGGGAGTGCTAAATCTTAGTCTTA 59.344 40.000 0.00 0.00 44.82 2.10
285 381 6.183360 ACGGGAGTGCTAAATCTTAGTCTTAG 60.183 42.308 0.00 0.00 44.82 2.18
286 382 6.183360 CGGGAGTGCTAAATCTTAGTCTTAGT 60.183 42.308 0.00 0.00 0.00 2.24
287 383 7.204604 GGGAGTGCTAAATCTTAGTCTTAGTC 58.795 42.308 0.00 0.00 0.00 2.59
288 384 6.913673 GGAGTGCTAAATCTTAGTCTTAGTCG 59.086 42.308 0.00 0.00 0.00 4.18
289 385 7.201714 GGAGTGCTAAATCTTAGTCTTAGTCGA 60.202 40.741 0.00 0.00 0.00 4.20
290 386 8.228035 AGTGCTAAATCTTAGTCTTAGTCGAT 57.772 34.615 0.00 0.00 0.00 3.59
291 387 8.132362 AGTGCTAAATCTTAGTCTTAGTCGATG 58.868 37.037 0.00 0.00 0.00 3.84
292 388 6.918569 TGCTAAATCTTAGTCTTAGTCGATGC 59.081 38.462 0.00 0.00 0.00 3.91
293 389 7.142680 GCTAAATCTTAGTCTTAGTCGATGCT 58.857 38.462 0.00 0.00 0.00 3.79
294 390 7.650104 GCTAAATCTTAGTCTTAGTCGATGCTT 59.350 37.037 0.00 0.00 0.00 3.91
295 391 9.522804 CTAAATCTTAGTCTTAGTCGATGCTTT 57.477 33.333 0.00 0.00 0.00 3.51
299 395 9.685828 ATCTTAGTCTTAGTCGATGCTTTATTC 57.314 33.333 0.00 0.00 0.00 1.75
300 396 8.683615 TCTTAGTCTTAGTCGATGCTTTATTCA 58.316 33.333 0.00 0.00 0.00 2.57
301 397 9.469807 CTTAGTCTTAGTCGATGCTTTATTCAT 57.530 33.333 0.00 0.00 0.00 2.57
302 398 7.706281 AGTCTTAGTCGATGCTTTATTCATG 57.294 36.000 0.00 0.00 0.00 3.07
303 399 7.492524 AGTCTTAGTCGATGCTTTATTCATGA 58.507 34.615 0.00 0.00 0.00 3.07
304 400 7.651304 AGTCTTAGTCGATGCTTTATTCATGAG 59.349 37.037 0.00 0.00 0.00 2.90
305 401 7.649705 GTCTTAGTCGATGCTTTATTCATGAGA 59.350 37.037 0.00 0.00 0.00 3.27
306 402 8.363390 TCTTAGTCGATGCTTTATTCATGAGAT 58.637 33.333 0.00 0.00 0.00 2.75
307 403 8.526218 TTAGTCGATGCTTTATTCATGAGATC 57.474 34.615 0.00 0.00 0.00 2.75
308 404 6.757237 AGTCGATGCTTTATTCATGAGATCT 58.243 36.000 0.00 0.00 0.00 2.75
309 405 7.215789 AGTCGATGCTTTATTCATGAGATCTT 58.784 34.615 0.00 0.00 0.00 2.40
310 406 8.363390 AGTCGATGCTTTATTCATGAGATCTTA 58.637 33.333 0.00 0.00 0.00 2.10
311 407 8.431593 GTCGATGCTTTATTCATGAGATCTTAC 58.568 37.037 0.00 0.00 0.00 2.34
312 408 7.327032 TCGATGCTTTATTCATGAGATCTTACG 59.673 37.037 0.00 0.00 0.00 3.18
313 409 7.115520 CGATGCTTTATTCATGAGATCTTACGT 59.884 37.037 0.00 0.00 0.00 3.57
314 410 7.468922 TGCTTTATTCATGAGATCTTACGTG 57.531 36.000 0.00 0.00 0.00 4.49
315 411 6.479990 TGCTTTATTCATGAGATCTTACGTGG 59.520 38.462 0.00 0.00 0.00 4.94
316 412 6.701841 GCTTTATTCATGAGATCTTACGTGGA 59.298 38.462 0.00 0.00 0.00 4.02
317 413 7.095857 GCTTTATTCATGAGATCTTACGTGGAG 60.096 40.741 0.00 0.00 0.00 3.86
318 414 7.582667 TTATTCATGAGATCTTACGTGGAGA 57.417 36.000 0.00 1.57 0.00 3.71
319 415 6.662865 ATTCATGAGATCTTACGTGGAGAT 57.337 37.500 13.95 13.95 36.60 2.75
320 416 5.697473 TCATGAGATCTTACGTGGAGATC 57.303 43.478 24.78 24.78 46.32 2.75
325 421 2.941453 TCTTACGTGGAGATCTGTGC 57.059 50.000 0.00 0.00 0.00 4.57
326 422 2.167662 TCTTACGTGGAGATCTGTGCA 58.832 47.619 0.00 0.00 0.00 4.57
327 423 2.560981 TCTTACGTGGAGATCTGTGCAA 59.439 45.455 0.00 0.00 0.00 4.08
328 424 3.006430 TCTTACGTGGAGATCTGTGCAAA 59.994 43.478 0.00 0.00 0.00 3.68
329 425 2.254546 ACGTGGAGATCTGTGCAAAA 57.745 45.000 0.00 0.00 0.00 2.44
330 426 2.783135 ACGTGGAGATCTGTGCAAAAT 58.217 42.857 0.00 0.00 0.00 1.82
331 427 3.149196 ACGTGGAGATCTGTGCAAAATT 58.851 40.909 0.00 0.00 0.00 1.82
332 428 3.569701 ACGTGGAGATCTGTGCAAAATTT 59.430 39.130 0.00 0.00 0.00 1.82
333 429 4.037923 ACGTGGAGATCTGTGCAAAATTTT 59.962 37.500 0.00 0.00 0.00 1.82
334 430 5.240623 ACGTGGAGATCTGTGCAAAATTTTA 59.759 36.000 0.00 0.00 0.00 1.52
335 431 6.071952 ACGTGGAGATCTGTGCAAAATTTTAT 60.072 34.615 0.00 0.00 0.00 1.40
336 432 6.808212 CGTGGAGATCTGTGCAAAATTTTATT 59.192 34.615 0.00 0.00 0.00 1.40
337 433 7.329226 CGTGGAGATCTGTGCAAAATTTTATTT 59.671 33.333 0.00 0.00 0.00 1.40
338 434 8.650714 GTGGAGATCTGTGCAAAATTTTATTTC 58.349 33.333 0.00 0.00 0.00 2.17
339 435 8.587608 TGGAGATCTGTGCAAAATTTTATTTCT 58.412 29.630 0.00 0.20 0.00 2.52
340 436 9.428097 GGAGATCTGTGCAAAATTTTATTTCTT 57.572 29.630 0.00 0.00 0.00 2.52
358 454 9.883142 TTATTTCTTCTTTTTGGAATGTTGTGT 57.117 25.926 0.00 0.00 0.00 3.72
359 455 7.826260 TTTCTTCTTTTTGGAATGTTGTGTC 57.174 32.000 0.00 0.00 0.00 3.67
360 456 6.522625 TCTTCTTTTTGGAATGTTGTGTCA 57.477 33.333 0.00 0.00 0.00 3.58
361 457 7.111247 TCTTCTTTTTGGAATGTTGTGTCAT 57.889 32.000 0.00 0.00 0.00 3.06
362 458 7.555087 TCTTCTTTTTGGAATGTTGTGTCATT 58.445 30.769 0.00 0.00 40.20 2.57
363 459 8.040132 TCTTCTTTTTGGAATGTTGTGTCATTT 58.960 29.630 0.00 0.00 38.03 2.32
364 460 7.536895 TCTTTTTGGAATGTTGTGTCATTTG 57.463 32.000 0.00 0.00 38.03 2.32
365 461 7.326454 TCTTTTTGGAATGTTGTGTCATTTGA 58.674 30.769 0.00 0.00 38.03 2.69
366 462 7.821359 TCTTTTTGGAATGTTGTGTCATTTGAA 59.179 29.630 0.00 0.00 38.03 2.69
367 463 8.503458 TTTTTGGAATGTTGTGTCATTTGAAT 57.497 26.923 0.00 0.00 38.03 2.57
368 464 7.479897 TTTGGAATGTTGTGTCATTTGAATG 57.520 32.000 0.00 0.00 38.03 2.67
369 465 6.402456 TGGAATGTTGTGTCATTTGAATGA 57.598 33.333 2.39 2.39 42.78 2.57
370 466 6.448852 TGGAATGTTGTGTCATTTGAATGAG 58.551 36.000 6.66 0.00 45.38 2.90
371 467 6.264970 TGGAATGTTGTGTCATTTGAATGAGA 59.735 34.615 6.66 3.25 45.38 3.27
380 476 7.815840 TGTCATTTGAATGAGACTTGGTTAA 57.184 32.000 6.66 0.00 45.38 2.01
381 477 7.874940 TGTCATTTGAATGAGACTTGGTTAAG 58.125 34.615 6.66 0.00 45.38 1.85
382 478 7.502226 TGTCATTTGAATGAGACTTGGTTAAGT 59.498 33.333 6.66 0.00 45.38 2.24
383 479 8.017946 GTCATTTGAATGAGACTTGGTTAAGTC 58.982 37.037 11.21 11.21 45.46 3.01
393 489 5.615925 ACTTGGTTAAGTCTCAGTCAACT 57.384 39.130 0.00 0.00 43.53 3.16
394 490 6.726490 ACTTGGTTAAGTCTCAGTCAACTA 57.274 37.500 0.00 0.00 43.53 2.24
395 491 7.120923 ACTTGGTTAAGTCTCAGTCAACTAA 57.879 36.000 0.00 0.00 43.53 2.24
396 492 7.210873 ACTTGGTTAAGTCTCAGTCAACTAAG 58.789 38.462 7.15 7.15 43.53 2.18
397 493 6.097915 TGGTTAAGTCTCAGTCAACTAAGG 57.902 41.667 0.00 0.00 0.00 2.69
398 494 5.601313 TGGTTAAGTCTCAGTCAACTAAGGT 59.399 40.000 0.00 0.00 0.00 3.50
399 495 6.157904 GGTTAAGTCTCAGTCAACTAAGGTC 58.842 44.000 0.00 0.00 0.00 3.85
400 496 6.015265 GGTTAAGTCTCAGTCAACTAAGGTCT 60.015 42.308 0.00 0.00 0.00 3.85
401 497 7.176340 GGTTAAGTCTCAGTCAACTAAGGTCTA 59.824 40.741 0.00 0.00 0.00 2.59
402 498 6.827586 AAGTCTCAGTCAACTAAGGTCTAG 57.172 41.667 0.00 0.00 0.00 2.43
403 499 4.703093 AGTCTCAGTCAACTAAGGTCTAGC 59.297 45.833 0.00 0.00 0.00 3.42
404 500 4.017808 TCTCAGTCAACTAAGGTCTAGCC 58.982 47.826 0.00 0.00 37.58 3.93
405 501 3.764434 CTCAGTCAACTAAGGTCTAGCCA 59.236 47.826 6.07 0.00 40.61 4.75
406 502 3.510360 TCAGTCAACTAAGGTCTAGCCAC 59.490 47.826 6.07 0.00 40.61 5.01
407 503 3.258372 CAGTCAACTAAGGTCTAGCCACA 59.742 47.826 6.07 0.00 40.61 4.17
408 504 3.258622 AGTCAACTAAGGTCTAGCCACAC 59.741 47.826 6.07 0.00 40.61 3.82
409 505 2.565834 TCAACTAAGGTCTAGCCACACC 59.434 50.000 6.07 0.00 40.61 4.16
410 506 1.569653 ACTAAGGTCTAGCCACACCC 58.430 55.000 6.07 0.00 40.61 4.61
411 507 1.078989 ACTAAGGTCTAGCCACACCCT 59.921 52.381 6.07 0.00 40.61 4.34
412 508 2.313945 ACTAAGGTCTAGCCACACCCTA 59.686 50.000 6.07 0.00 40.61 3.53
413 509 2.337359 AAGGTCTAGCCACACCCTAA 57.663 50.000 6.07 0.00 40.61 2.69
414 510 2.337359 AGGTCTAGCCACACCCTAAA 57.663 50.000 6.07 0.00 40.61 1.85
415 511 2.627933 AGGTCTAGCCACACCCTAAAA 58.372 47.619 6.07 0.00 40.61 1.52
416 512 3.190439 AGGTCTAGCCACACCCTAAAAT 58.810 45.455 6.07 0.00 40.61 1.82
417 513 4.368067 AGGTCTAGCCACACCCTAAAATA 58.632 43.478 6.07 0.00 40.61 1.40
460 556 4.016444 TCAAGAATGGGCACATTTAGGTC 58.984 43.478 16.91 2.08 46.89 3.85
462 558 2.311542 AGAATGGGCACATTTAGGTCCA 59.688 45.455 16.91 0.00 46.89 4.02
463 559 2.917713 ATGGGCACATTTAGGTCCAA 57.082 45.000 0.00 0.00 32.00 3.53
464 560 2.214376 TGGGCACATTTAGGTCCAAG 57.786 50.000 0.00 0.00 0.00 3.61
465 561 0.817654 GGGCACATTTAGGTCCAAGC 59.182 55.000 0.00 0.00 0.00 4.01
466 562 0.817654 GGCACATTTAGGTCCAAGCC 59.182 55.000 0.00 0.00 0.00 4.35
467 563 0.817654 GCACATTTAGGTCCAAGCCC 59.182 55.000 0.00 0.00 0.00 5.19
468 564 1.616994 GCACATTTAGGTCCAAGCCCT 60.617 52.381 0.00 0.00 36.04 5.19
469 565 2.807676 CACATTTAGGTCCAAGCCCTT 58.192 47.619 0.00 0.00 33.35 3.95
470 566 2.755103 CACATTTAGGTCCAAGCCCTTC 59.245 50.000 0.00 0.00 33.35 3.46
471 567 2.378547 ACATTTAGGTCCAAGCCCTTCA 59.621 45.455 0.00 0.00 33.35 3.02
472 568 3.181423 ACATTTAGGTCCAAGCCCTTCAA 60.181 43.478 0.00 0.00 33.35 2.69
493 589 9.933723 CTTCAAAATTTCACCTGATATTTTCCT 57.066 29.630 11.35 0.00 40.85 3.36
520 616 0.459585 CTGCAAGCCAATGGACATGC 60.460 55.000 2.05 10.37 0.00 4.06
537 633 1.163420 TGCGCACCAAACTCGAACAT 61.163 50.000 5.66 0.00 0.00 2.71
568 669 8.801715 AAAAACACATAGCAAGTAGTTTGATG 57.198 30.769 0.00 0.00 39.21 3.07
598 699 6.091305 CACATTATAGAATGGCATGAGGTACG 59.909 42.308 14.27 0.00 45.83 3.67
599 700 2.526304 TAGAATGGCATGAGGTACGC 57.474 50.000 0.00 0.00 0.00 4.42
601 702 1.152963 AATGGCATGAGGTACGCCC 60.153 57.895 0.00 0.00 45.63 6.13
652 753 6.615088 CAAAAGATACTTGTCCATCCTTGTG 58.385 40.000 0.00 0.00 0.00 3.33
705 807 1.439679 CCGAACAAGTTACCTCCAGC 58.560 55.000 0.00 0.00 0.00 4.85
751 853 5.529791 GCATCGGCTACTCACTATTCTAAA 58.470 41.667 0.00 0.00 36.96 1.85
752 854 6.159988 GCATCGGCTACTCACTATTCTAAAT 58.840 40.000 0.00 0.00 36.96 1.40
753 855 6.647067 GCATCGGCTACTCACTATTCTAAATT 59.353 38.462 0.00 0.00 36.96 1.82
754 856 7.171678 GCATCGGCTACTCACTATTCTAAATTT 59.828 37.037 0.00 0.00 36.96 1.82
755 857 8.704234 CATCGGCTACTCACTATTCTAAATTTC 58.296 37.037 0.00 0.00 0.00 2.17
756 858 7.208080 TCGGCTACTCACTATTCTAAATTTCC 58.792 38.462 0.00 0.00 0.00 3.13
757 859 6.984474 CGGCTACTCACTATTCTAAATTTCCA 59.016 38.462 0.00 0.00 0.00 3.53
758 860 7.494625 CGGCTACTCACTATTCTAAATTTCCAA 59.505 37.037 0.00 0.00 0.00 3.53
759 861 9.343539 GGCTACTCACTATTCTAAATTTCCAAT 57.656 33.333 0.00 0.00 0.00 3.16
762 864 8.579850 ACTCACTATTCTAAATTTCCAATGCA 57.420 30.769 0.00 0.00 0.00 3.96
763 865 9.193806 ACTCACTATTCTAAATTTCCAATGCAT 57.806 29.630 0.00 0.00 0.00 3.96
799 901 6.458210 ACCAAAGATTTAAACATGAGCAAGG 58.542 36.000 0.00 0.00 0.00 3.61
964 1072 1.339929 GTCCATTTGTTTCCGGCAGTT 59.660 47.619 0.00 0.00 0.00 3.16
978 1086 2.783135 GGCAGTTCCATGACAAGAAGA 58.217 47.619 0.00 0.00 34.01 2.87
1014 1126 1.069204 GTCGCCATGGATTCAGAGCTA 59.931 52.381 18.40 0.00 0.00 3.32
1019 1131 3.501445 GCCATGGATTCAGAGCTATCAAC 59.499 47.826 18.40 0.00 0.00 3.18
1030 1142 4.629200 CAGAGCTATCAACAGTGTTCTTCC 59.371 45.833 5.27 0.00 0.00 3.46
1033 1145 3.126000 GCTATCAACAGTGTTCTTCCTGC 59.874 47.826 5.27 2.83 31.76 4.85
1044 1156 5.703130 AGTGTTCTTCCTGCTGATAGTTTTC 59.297 40.000 0.00 0.00 0.00 2.29
1065 1177 0.040958 CAGCGTGTTGTTGCTCTTCC 60.041 55.000 0.00 0.00 40.03 3.46
1175 1290 2.320587 GGTCGGTGAAGCACAGCAG 61.321 63.158 12.13 6.37 45.96 4.24
1179 1294 2.263741 GGTGAAGCACAGCAGGGTG 61.264 63.158 7.94 0.00 45.12 4.61
1332 1447 0.616679 AGTTCAAGGCCGGCTACCTA 60.617 55.000 28.56 6.70 36.14 3.08
1434 1564 3.009115 TGGAGGAAGAAGGGGGCG 61.009 66.667 0.00 0.00 0.00 6.13
1437 1567 3.009714 AGGAAGAAGGGGGCGGTC 61.010 66.667 0.00 0.00 0.00 4.79
1481 1611 1.810030 GCGGTAAGGAGACAAGGCG 60.810 63.158 0.00 0.00 0.00 5.52
1512 1651 0.240678 TTGCATTGCACGTCCATGAC 59.759 50.000 11.66 0.00 38.71 3.06
1517 1656 0.615850 TTGCACGTCCATGACCCATA 59.384 50.000 0.00 0.00 0.00 2.74
1553 1706 2.877113 CATTGCGCGCCATGTGTG 60.877 61.111 30.77 16.13 0.00 3.82
1633 1786 2.107041 AACCAGATCGTGACGGGCAA 62.107 55.000 4.70 0.00 0.00 4.52
1802 1962 1.078143 GGGCGACTGCAAGGAGAAT 60.078 57.895 0.00 0.00 45.35 2.40
1828 1990 1.827789 GCACTTGGCACAGGGAACA 60.828 57.895 3.57 0.00 40.91 3.18
1829 1991 1.391157 GCACTTGGCACAGGGAACAA 61.391 55.000 3.57 0.00 40.91 2.83
1830 1992 0.385390 CACTTGGCACAGGGAACAAC 59.615 55.000 0.00 0.00 40.91 3.32
1858 2020 5.971763 AGCTAACGAACTCTTCAGATGAAT 58.028 37.500 0.00 0.00 33.01 2.57
1864 2026 5.121454 ACGAACTCTTCAGATGAATTTCAGC 59.879 40.000 6.54 6.54 33.01 4.26
1873 2035 4.084287 AGATGAATTTCAGCTGCAAAGGA 58.916 39.130 15.94 0.00 42.17 3.36
1914 2078 8.442632 TCTGATGGACATTGATTACTTTGATC 57.557 34.615 0.00 0.00 0.00 2.92
1924 2091 9.468532 CATTGATTACTTTGATCTGATCTCGTA 57.531 33.333 17.82 12.63 0.00 3.43
1987 2167 4.742201 TGCCGGAGAACAGCGAGC 62.742 66.667 5.05 0.00 0.00 5.03
1998 2178 4.146075 AGCGAGCTGAGCCTGCTC 62.146 66.667 14.32 12.18 46.84 4.26
2094 2274 7.597369 GGGGTAAACAAAATGATCAAGTGTTAC 59.403 37.037 17.41 15.07 32.32 2.50
2095 2275 7.597369 GGGTAAACAAAATGATCAAGTGTTACC 59.403 37.037 17.41 19.82 32.32 2.85
2096 2276 8.357402 GGTAAACAAAATGATCAAGTGTTACCT 58.643 33.333 17.41 8.81 32.32 3.08
2179 2361 3.884169 TCTTATCTGTTTTTGTGTGCGC 58.116 40.909 0.00 0.00 0.00 6.09
2233 2415 2.359230 GGCACTCAGCTGGACCAC 60.359 66.667 15.13 0.00 44.79 4.16
2443 2625 2.052104 GGGGGCCTGATTTTGTCGG 61.052 63.158 0.84 0.00 0.00 4.79
2452 2634 1.400142 TGATTTTGTCGGCGGCATAAG 59.600 47.619 17.58 0.00 0.00 1.73
2453 2635 0.738389 ATTTTGTCGGCGGCATAAGG 59.262 50.000 17.58 0.00 0.00 2.69
2458 2640 2.186903 CGGCGGCATAAGGTGTCT 59.813 61.111 10.53 0.00 0.00 3.41
2471 2653 6.183360 GCATAAGGTGTCTCTGAAACTCATTC 60.183 42.308 0.00 0.00 38.60 2.67
2472 2654 3.919216 AGGTGTCTCTGAAACTCATTCG 58.081 45.455 0.00 0.00 41.18 3.34
2474 2656 4.058817 GGTGTCTCTGAAACTCATTCGTT 58.941 43.478 0.00 0.00 41.18 3.85
2475 2657 4.150804 GGTGTCTCTGAAACTCATTCGTTC 59.849 45.833 0.00 0.00 41.18 3.95
2476 2658 4.745125 GTGTCTCTGAAACTCATTCGTTCA 59.255 41.667 0.00 0.00 41.18 3.18
2478 2660 6.586463 GTGTCTCTGAAACTCATTCGTTCATA 59.414 38.462 0.00 0.00 41.18 2.15
2543 2733 2.724977 TTCTCTCGAACACGAAGCAT 57.275 45.000 0.00 0.00 35.63 3.79
2563 2753 4.023707 GCATCAGCAGTCAAACAAGTTAGT 60.024 41.667 0.00 0.00 41.58 2.24
2564 2754 5.179368 GCATCAGCAGTCAAACAAGTTAGTA 59.821 40.000 0.00 0.00 41.58 1.82
2635 2826 5.682862 GCAGTTCAGTTCAGTTGTTGTATTG 59.317 40.000 0.00 0.00 0.00 1.90
2643 2834 7.171508 CAGTTCAGTTGTTGTATTGCTCTTCTA 59.828 37.037 0.00 0.00 0.00 2.10
2673 2866 1.074951 CACAGTGGGGAAAGGGGAC 59.925 63.158 0.00 0.00 0.00 4.46
2710 2903 1.040646 GCCTGTCGGATCCAGACATA 58.959 55.000 27.91 14.34 46.07 2.29
2711 2904 1.269831 GCCTGTCGGATCCAGACATAC 60.270 57.143 27.91 21.56 46.07 2.39
2712 2905 2.311463 CCTGTCGGATCCAGACATACT 58.689 52.381 27.91 0.00 46.07 2.12
2713 2906 2.294791 CCTGTCGGATCCAGACATACTC 59.705 54.545 27.91 9.84 46.07 2.59
2714 2907 2.294791 CTGTCGGATCCAGACATACTCC 59.705 54.545 27.91 9.31 46.07 3.85
2715 2908 2.091830 TGTCGGATCCAGACATACTCCT 60.092 50.000 25.65 0.00 42.91 3.69
2716 2909 3.137728 TGTCGGATCCAGACATACTCCTA 59.862 47.826 25.65 9.10 42.91 2.94
2727 2920 5.016831 AGACATACTCCTACATGTGTGACA 58.983 41.667 9.11 0.00 35.55 3.58
2730 2923 5.126222 ACATACTCCTACATGTGTGACAGAG 59.874 44.000 9.11 7.68 34.15 3.35
2748 2941 0.034059 AGACCAACCTCTCGCAACTG 59.966 55.000 0.00 0.00 0.00 3.16
2759 2952 3.365265 GCAACTGGCAAGTCCCGG 61.365 66.667 0.00 0.00 43.97 5.73
2788 2981 2.368594 CAGGAGGGGGCCAGTAGA 59.631 66.667 4.39 0.00 0.00 2.59
2792 2985 1.205460 GGAGGGGGCCAGTAGAACAA 61.205 60.000 4.39 0.00 0.00 2.83
2796 2992 1.285078 GGGGGCCAGTAGAACAAGAAT 59.715 52.381 4.39 0.00 0.00 2.40
2797 2993 2.369394 GGGGCCAGTAGAACAAGAATG 58.631 52.381 4.39 0.00 0.00 2.67
2803 2999 5.938125 GGCCAGTAGAACAAGAATGTAAAGA 59.062 40.000 0.00 0.00 39.40 2.52
2804 3000 6.092807 GGCCAGTAGAACAAGAATGTAAAGAG 59.907 42.308 0.00 0.00 39.40 2.85
2805 3001 6.874134 GCCAGTAGAACAAGAATGTAAAGAGA 59.126 38.462 0.00 0.00 39.40 3.10
2815 3011 9.914131 ACAAGAATGTAAAGAGAATAAAAAGGC 57.086 29.630 0.00 0.00 38.24 4.35
2816 3012 9.912634 CAAGAATGTAAAGAGAATAAAAAGGCA 57.087 29.630 0.00 0.00 0.00 4.75
2825 3021 7.454260 AGAGAATAAAAAGGCAATTCGTCTT 57.546 32.000 0.00 0.00 43.00 3.01
2835 3031 6.663944 AGGCAATTCGTCTTAACTAATCAC 57.336 37.500 0.00 0.00 0.00 3.06
2981 3634 3.783020 TATTGAGCCGAGCAGCCCAAG 62.783 57.143 0.00 0.00 0.00 3.61
2984 3637 4.704833 GCCGAGCAGCCCAAGACA 62.705 66.667 0.00 0.00 0.00 3.41
2987 3640 0.531532 CCGAGCAGCCCAAGACATAG 60.532 60.000 0.00 0.00 0.00 2.23
2990 3643 1.762957 GAGCAGCCCAAGACATAGGTA 59.237 52.381 0.00 0.00 0.00 3.08
2993 3646 2.743183 GCAGCCCAAGACATAGGTACTG 60.743 54.545 0.00 0.00 41.52 2.74
3071 4900 1.613925 TCGATCATCTTCGGGTCATCC 59.386 52.381 0.00 0.00 39.56 3.51
3072 4901 1.615883 CGATCATCTTCGGGTCATCCT 59.384 52.381 0.00 0.00 35.50 3.24
3073 4902 2.608998 CGATCATCTTCGGGTCATCCTG 60.609 54.545 0.00 0.00 41.27 3.86
3074 4903 1.123077 TCATCTTCGGGTCATCCTGG 58.877 55.000 0.00 0.00 40.36 4.45
3075 4904 1.123077 CATCTTCGGGTCATCCTGGA 58.877 55.000 0.00 0.00 40.36 3.86
3118 4947 4.490959 CGCATGCTACAACGTTTCTTAGAG 60.491 45.833 17.13 0.00 0.00 2.43
3134 4963 5.207354 TCTTAGAGTGATGCAGAAGGAGAT 58.793 41.667 0.00 0.00 0.00 2.75
3145 4974 4.064388 GCAGAAGGAGATATGAAAGGAGC 58.936 47.826 0.00 0.00 0.00 4.70
3166 4995 4.240096 GCAGCTTGCATTTGTAACTCATT 58.760 39.130 0.00 0.00 44.26 2.57
3171 5000 6.762661 AGCTTGCATTTGTAACTCATTTTTGT 59.237 30.769 0.00 0.00 0.00 2.83
3180 5009 7.701539 TGTAACTCATTTTTGTGGCATCTAT 57.298 32.000 0.00 0.00 0.00 1.98
3181 5010 8.800370 TGTAACTCATTTTTGTGGCATCTATA 57.200 30.769 0.00 0.00 0.00 1.31
3182 5011 8.673711 TGTAACTCATTTTTGTGGCATCTATAC 58.326 33.333 0.00 0.00 0.00 1.47
3188 5017 9.368674 TCATTTTTGTGGCATCTATACAATTTG 57.631 29.630 0.00 0.00 34.63 2.32
3189 5018 9.368674 CATTTTTGTGGCATCTATACAATTTGA 57.631 29.630 2.79 0.00 34.63 2.69
3190 5019 8.755696 TTTTTGTGGCATCTATACAATTTGAC 57.244 30.769 2.79 0.00 34.63 3.18
3191 5020 5.733226 TGTGGCATCTATACAATTTGACG 57.267 39.130 2.79 0.00 0.00 4.35
3210 5039 3.025978 ACGGACATACTACGATTTCCCA 58.974 45.455 0.00 0.00 0.00 4.37
3218 5047 3.270877 ACTACGATTTCCCAATCACTGC 58.729 45.455 0.00 0.00 39.14 4.40
3222 5051 2.159338 CGATTTCCCAATCACTGCCAAG 60.159 50.000 0.00 0.00 39.14 3.61
3232 5061 3.071874 TCACTGCCAAGTTATCAAGGG 57.928 47.619 0.00 0.00 32.98 3.95
3241 5070 4.322801 CCAAGTTATCAAGGGAACGAGTCT 60.323 45.833 0.00 0.00 0.00 3.24
3254 5083 5.125097 GGGAACGAGTCTAGTCTTTATCACA 59.875 44.000 0.00 0.00 0.00 3.58
3260 5089 6.699204 CGAGTCTAGTCTTTATCACATGCATT 59.301 38.462 0.00 0.00 0.00 3.56
3281 5110 8.203485 TGCATTATTTCTTTTCTTCTGTTTGGT 58.797 29.630 0.00 0.00 0.00 3.67
3290 5119 7.724061 TCTTTTCTTCTGTTTGGTATTAGGCTT 59.276 33.333 0.00 0.00 0.00 4.35
3291 5120 7.448748 TTTCTTCTGTTTGGTATTAGGCTTC 57.551 36.000 0.00 0.00 0.00 3.86
3294 5123 5.353394 TCTGTTTGGTATTAGGCTTCGAT 57.647 39.130 0.00 0.00 0.00 3.59
3298 5127 7.990886 TCTGTTTGGTATTAGGCTTCGATTATT 59.009 33.333 0.00 0.00 0.00 1.40
3305 5134 0.307760 GGCTTCGATTATTGGCACCG 59.692 55.000 0.00 0.00 0.00 4.94
3306 5135 0.317020 GCTTCGATTATTGGCACCGC 60.317 55.000 0.00 0.00 0.00 5.68
3317 5146 1.164411 TGGCACCGCTTTATCAAGTG 58.836 50.000 0.00 0.00 39.85 3.16
3341 5170 7.766278 GTGGATAGAAATAGTGACAGATGTTGT 59.234 37.037 0.00 0.00 44.55 3.32
3347 5176 8.774586 AGAAATAGTGACAGATGTTGTTAACAC 58.225 33.333 8.07 4.61 45.50 3.32
3349 5178 3.807622 AGTGACAGATGTTGTTAACACGG 59.192 43.478 8.07 0.12 45.50 4.94
3358 5187 1.588674 TGTTAACACGGTGGCTTCAG 58.411 50.000 13.48 0.00 0.00 3.02
3364 5193 0.603569 CACGGTGGCTTCAGACTACT 59.396 55.000 0.00 0.00 0.00 2.57
3366 5195 1.000955 ACGGTGGCTTCAGACTACTTG 59.999 52.381 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.795872 CGTACCGTCAGAAACATGCAA 59.204 47.619 0.00 0.00 0.00 4.08
26 27 5.787062 GCTAAATTTTCGTACCGTCAGAAAC 59.213 40.000 0.00 0.00 34.14 2.78
34 35 4.932268 TTCAGGCTAAATTTTCGTACCG 57.068 40.909 0.00 0.00 0.00 4.02
37 38 7.142680 CCAGTTTTTCAGGCTAAATTTTCGTA 58.857 34.615 0.00 0.00 0.00 3.43
40 41 6.288294 ACCCAGTTTTTCAGGCTAAATTTTC 58.712 36.000 0.00 0.00 0.00 2.29
46 47 3.486383 CAGACCCAGTTTTTCAGGCTAA 58.514 45.455 0.00 0.00 0.00 3.09
77 78 7.047891 GGATGTACCATGTGACTTTATCTGAA 58.952 38.462 0.00 0.00 38.79 3.02
78 79 6.156083 TGGATGTACCATGTGACTTTATCTGA 59.844 38.462 0.00 0.00 44.64 3.27
79 80 6.348498 TGGATGTACCATGTGACTTTATCTG 58.652 40.000 0.00 0.00 44.64 2.90
80 81 6.560003 TGGATGTACCATGTGACTTTATCT 57.440 37.500 0.00 0.00 44.64 1.98
149 152 3.502211 AGTGAATTTCGCCTTTTCGACAT 59.498 39.130 6.34 0.00 38.30 3.06
154 157 6.528072 CCTATTTGAGTGAATTTCGCCTTTTC 59.472 38.462 6.34 0.00 0.00 2.29
161 164 3.374058 ACGCCCTATTTGAGTGAATTTCG 59.626 43.478 0.00 0.00 0.00 3.46
170 173 2.906354 AGCTTGTACGCCCTATTTGAG 58.094 47.619 0.00 0.00 0.00 3.02
171 174 3.343941 AAGCTTGTACGCCCTATTTGA 57.656 42.857 0.00 0.00 0.00 2.69
180 183 5.577164 TGAGATTCTCTTTAAGCTTGTACGC 59.423 40.000 9.86 0.00 0.00 4.42
181 184 7.582435 TTGAGATTCTCTTTAAGCTTGTACG 57.418 36.000 9.86 0.00 0.00 3.67
195 291 7.223777 GGCAACTACTCTGTATTTGAGATTCTC 59.776 40.741 6.73 6.73 35.66 2.87
197 293 6.258947 GGGCAACTACTCTGTATTTGAGATTC 59.741 42.308 10.56 0.00 35.66 2.52
210 306 2.586368 AGGGTACTAGGGCAACTACTCT 59.414 50.000 0.00 0.00 0.00 3.24
216 312 4.765813 TCATTAAGGGTACTAGGGCAAC 57.234 45.455 0.00 0.00 0.00 4.17
258 354 5.046520 AGACTAAGATTTAGCACTCCCGTTT 60.047 40.000 0.00 0.00 0.00 3.60
259 355 4.466726 AGACTAAGATTTAGCACTCCCGTT 59.533 41.667 0.00 0.00 0.00 4.44
260 356 4.024670 AGACTAAGATTTAGCACTCCCGT 58.975 43.478 0.00 0.00 0.00 5.28
261 357 4.657436 AGACTAAGATTTAGCACTCCCG 57.343 45.455 0.00 0.00 0.00 5.14
262 358 7.114866 ACTAAGACTAAGATTTAGCACTCCC 57.885 40.000 0.00 0.00 0.00 4.30
263 359 6.913673 CGACTAAGACTAAGATTTAGCACTCC 59.086 42.308 0.00 0.00 0.00 3.85
264 360 7.695820 TCGACTAAGACTAAGATTTAGCACTC 58.304 38.462 0.00 0.00 0.00 3.51
265 361 7.627298 TCGACTAAGACTAAGATTTAGCACT 57.373 36.000 0.00 0.00 0.00 4.40
266 362 7.096394 GCATCGACTAAGACTAAGATTTAGCAC 60.096 40.741 0.00 0.00 0.00 4.40
267 363 6.918569 GCATCGACTAAGACTAAGATTTAGCA 59.081 38.462 0.00 0.00 0.00 3.49
268 364 7.142680 AGCATCGACTAAGACTAAGATTTAGC 58.857 38.462 0.00 0.00 0.00 3.09
269 365 9.522804 AAAGCATCGACTAAGACTAAGATTTAG 57.477 33.333 0.00 0.00 0.00 1.85
273 369 9.685828 GAATAAAGCATCGACTAAGACTAAGAT 57.314 33.333 0.00 0.00 0.00 2.40
274 370 8.683615 TGAATAAAGCATCGACTAAGACTAAGA 58.316 33.333 0.00 0.00 0.00 2.10
275 371 8.858003 TGAATAAAGCATCGACTAAGACTAAG 57.142 34.615 0.00 0.00 0.00 2.18
276 372 9.249457 CATGAATAAAGCATCGACTAAGACTAA 57.751 33.333 0.00 0.00 0.00 2.24
277 373 8.630037 TCATGAATAAAGCATCGACTAAGACTA 58.370 33.333 0.00 0.00 0.00 2.59
278 374 7.492524 TCATGAATAAAGCATCGACTAAGACT 58.507 34.615 0.00 0.00 0.00 3.24
279 375 7.649705 TCTCATGAATAAAGCATCGACTAAGAC 59.350 37.037 0.00 0.00 0.00 3.01
280 376 7.716612 TCTCATGAATAAAGCATCGACTAAGA 58.283 34.615 0.00 0.00 0.00 2.10
281 377 7.936950 TCTCATGAATAAAGCATCGACTAAG 57.063 36.000 0.00 0.00 0.00 2.18
282 378 8.363390 AGATCTCATGAATAAAGCATCGACTAA 58.637 33.333 0.00 0.00 0.00 2.24
283 379 7.890515 AGATCTCATGAATAAAGCATCGACTA 58.109 34.615 0.00 0.00 0.00 2.59
284 380 6.757237 AGATCTCATGAATAAAGCATCGACT 58.243 36.000 0.00 0.00 0.00 4.18
285 381 7.418840 AAGATCTCATGAATAAAGCATCGAC 57.581 36.000 0.00 0.00 0.00 4.20
286 382 7.327032 CGTAAGATCTCATGAATAAAGCATCGA 59.673 37.037 0.00 0.00 43.02 3.59
287 383 7.115520 ACGTAAGATCTCATGAATAAAGCATCG 59.884 37.037 0.00 0.00 43.62 3.84
288 384 8.219769 CACGTAAGATCTCATGAATAAAGCATC 58.780 37.037 0.00 0.00 43.62 3.91
289 385 7.172190 CCACGTAAGATCTCATGAATAAAGCAT 59.828 37.037 0.00 0.00 43.62 3.79
290 386 6.479990 CCACGTAAGATCTCATGAATAAAGCA 59.520 38.462 0.00 0.00 43.62 3.91
291 387 6.701841 TCCACGTAAGATCTCATGAATAAAGC 59.298 38.462 0.00 0.00 43.62 3.51
292 388 8.138074 TCTCCACGTAAGATCTCATGAATAAAG 58.862 37.037 0.00 0.00 43.62 1.85
293 389 8.007405 TCTCCACGTAAGATCTCATGAATAAA 57.993 34.615 0.00 0.00 43.62 1.40
294 390 7.582667 TCTCCACGTAAGATCTCATGAATAA 57.417 36.000 0.00 0.00 43.62 1.40
295 391 7.767250 ATCTCCACGTAAGATCTCATGAATA 57.233 36.000 0.00 0.00 43.62 1.75
296 392 6.662865 ATCTCCACGTAAGATCTCATGAAT 57.337 37.500 0.00 0.00 43.62 2.57
297 393 6.078202 GATCTCCACGTAAGATCTCATGAA 57.922 41.667 23.25 0.00 43.78 2.57
298 394 5.697473 GATCTCCACGTAAGATCTCATGA 57.303 43.478 23.25 0.00 43.78 3.07
304 400 3.181486 TGCACAGATCTCCACGTAAGATC 60.181 47.826 23.15 23.15 46.28 2.75
305 401 2.760650 TGCACAGATCTCCACGTAAGAT 59.239 45.455 11.33 11.33 43.62 2.40
306 402 2.167662 TGCACAGATCTCCACGTAAGA 58.832 47.619 0.00 2.62 43.62 2.10
308 404 3.394674 TTTGCACAGATCTCCACGTAA 57.605 42.857 0.00 0.00 0.00 3.18
309 405 3.394674 TTTTGCACAGATCTCCACGTA 57.605 42.857 0.00 0.00 0.00 3.57
310 406 2.254546 TTTTGCACAGATCTCCACGT 57.745 45.000 0.00 0.00 0.00 4.49
311 407 3.837213 AATTTTGCACAGATCTCCACG 57.163 42.857 0.00 0.00 0.00 4.94
312 408 8.538409 AAATAAAATTTTGCACAGATCTCCAC 57.462 30.769 13.76 0.00 0.00 4.02
313 409 8.587608 AGAAATAAAATTTTGCACAGATCTCCA 58.412 29.630 13.76 0.00 0.00 3.86
314 410 8.992835 AGAAATAAAATTTTGCACAGATCTCC 57.007 30.769 13.76 0.00 0.00 3.71
332 428 9.883142 ACACAACATTCCAAAAAGAAGAAATAA 57.117 25.926 0.00 0.00 0.00 1.40
333 429 9.528018 GACACAACATTCCAAAAAGAAGAAATA 57.472 29.630 0.00 0.00 0.00 1.40
334 430 8.040132 TGACACAACATTCCAAAAAGAAGAAAT 58.960 29.630 0.00 0.00 0.00 2.17
335 431 7.382110 TGACACAACATTCCAAAAAGAAGAAA 58.618 30.769 0.00 0.00 0.00 2.52
336 432 6.929625 TGACACAACATTCCAAAAAGAAGAA 58.070 32.000 0.00 0.00 0.00 2.52
337 433 6.522625 TGACACAACATTCCAAAAAGAAGA 57.477 33.333 0.00 0.00 0.00 2.87
338 434 7.775397 AATGACACAACATTCCAAAAAGAAG 57.225 32.000 0.00 0.00 35.92 2.85
339 435 7.821359 TCAAATGACACAACATTCCAAAAAGAA 59.179 29.630 0.00 0.00 39.19 2.52
340 436 7.326454 TCAAATGACACAACATTCCAAAAAGA 58.674 30.769 0.00 0.00 39.19 2.52
341 437 7.536895 TCAAATGACACAACATTCCAAAAAG 57.463 32.000 0.00 0.00 39.19 2.27
342 438 7.912056 TTCAAATGACACAACATTCCAAAAA 57.088 28.000 0.00 0.00 39.19 1.94
343 439 7.767659 TCATTCAAATGACACAACATTCCAAAA 59.232 29.630 1.30 0.00 40.32 2.44
344 440 7.270779 TCATTCAAATGACACAACATTCCAAA 58.729 30.769 1.30 0.00 40.32 3.28
345 441 6.814043 TCATTCAAATGACACAACATTCCAA 58.186 32.000 1.30 0.00 40.32 3.53
346 442 6.264970 TCTCATTCAAATGACACAACATTCCA 59.735 34.615 1.30 0.00 40.32 3.53
347 443 6.583806 GTCTCATTCAAATGACACAACATTCC 59.416 38.462 1.30 0.00 40.32 3.01
348 444 7.365741 AGTCTCATTCAAATGACACAACATTC 58.634 34.615 11.91 0.00 40.32 2.67
349 445 7.281040 AGTCTCATTCAAATGACACAACATT 57.719 32.000 11.91 0.00 40.32 2.71
350 446 6.889301 AGTCTCATTCAAATGACACAACAT 57.111 33.333 11.91 0.00 40.32 2.71
351 447 6.459985 CCAAGTCTCATTCAAATGACACAACA 60.460 38.462 11.91 0.00 40.32 3.33
352 448 5.916883 CCAAGTCTCATTCAAATGACACAAC 59.083 40.000 11.91 5.02 40.32 3.32
353 449 5.593909 ACCAAGTCTCATTCAAATGACACAA 59.406 36.000 11.91 0.00 40.32 3.33
354 450 5.132502 ACCAAGTCTCATTCAAATGACACA 58.867 37.500 11.91 0.00 40.32 3.72
355 451 5.695851 ACCAAGTCTCATTCAAATGACAC 57.304 39.130 1.30 2.64 40.32 3.67
356 452 7.502226 ACTTAACCAAGTCTCATTCAAATGACA 59.498 33.333 1.30 0.00 41.25 3.58
357 453 7.875971 ACTTAACCAAGTCTCATTCAAATGAC 58.124 34.615 1.30 0.00 41.25 3.06
372 468 6.647067 CCTTAGTTGACTGAGACTTAACCAAG 59.353 42.308 4.66 0.00 37.81 3.61
373 469 6.099269 ACCTTAGTTGACTGAGACTTAACCAA 59.901 38.462 4.66 0.00 31.92 3.67
374 470 5.601313 ACCTTAGTTGACTGAGACTTAACCA 59.399 40.000 4.66 0.00 31.92 3.67
375 471 6.015265 AGACCTTAGTTGACTGAGACTTAACC 60.015 42.308 4.66 0.00 31.92 2.85
376 472 6.983984 AGACCTTAGTTGACTGAGACTTAAC 58.016 40.000 4.66 0.00 31.92 2.01
377 473 7.094291 GCTAGACCTTAGTTGACTGAGACTTAA 60.094 40.741 4.66 0.00 31.92 1.85
378 474 6.374894 GCTAGACCTTAGTTGACTGAGACTTA 59.625 42.308 4.66 0.00 31.92 2.24
379 475 5.184287 GCTAGACCTTAGTTGACTGAGACTT 59.816 44.000 4.66 0.00 31.92 3.01
380 476 4.703093 GCTAGACCTTAGTTGACTGAGACT 59.297 45.833 4.66 6.29 31.92 3.24
381 477 4.142337 GGCTAGACCTTAGTTGACTGAGAC 60.142 50.000 4.66 0.00 31.92 3.36
382 478 4.017808 GGCTAGACCTTAGTTGACTGAGA 58.982 47.826 4.66 0.00 31.92 3.27
383 479 3.764434 TGGCTAGACCTTAGTTGACTGAG 59.236 47.826 0.00 0.00 40.22 3.35
384 480 3.510360 GTGGCTAGACCTTAGTTGACTGA 59.490 47.826 0.00 0.00 40.22 3.41
385 481 3.258372 TGTGGCTAGACCTTAGTTGACTG 59.742 47.826 0.00 0.00 40.22 3.51
386 482 3.258622 GTGTGGCTAGACCTTAGTTGACT 59.741 47.826 0.00 0.00 40.22 3.41
387 483 3.586892 GTGTGGCTAGACCTTAGTTGAC 58.413 50.000 0.00 0.00 40.22 3.18
388 484 2.565834 GGTGTGGCTAGACCTTAGTTGA 59.434 50.000 9.35 0.00 37.28 3.18
389 485 2.354805 GGGTGTGGCTAGACCTTAGTTG 60.355 54.545 16.19 0.00 40.05 3.16
390 486 1.907255 GGGTGTGGCTAGACCTTAGTT 59.093 52.381 16.19 0.00 40.05 2.24
391 487 1.078989 AGGGTGTGGCTAGACCTTAGT 59.921 52.381 16.19 0.00 40.05 2.24
392 488 1.867363 AGGGTGTGGCTAGACCTTAG 58.133 55.000 16.19 0.00 40.05 2.18
393 489 3.478175 TTAGGGTGTGGCTAGACCTTA 57.522 47.619 16.19 10.23 40.05 2.69
394 490 2.337359 TTAGGGTGTGGCTAGACCTT 57.663 50.000 16.19 11.32 40.05 3.50
395 491 2.337359 TTTAGGGTGTGGCTAGACCT 57.663 50.000 16.19 4.46 40.05 3.85
396 492 3.646736 ATTTTAGGGTGTGGCTAGACC 57.353 47.619 8.00 8.00 39.46 3.85
397 493 7.457024 TTTTTATTTTAGGGTGTGGCTAGAC 57.543 36.000 0.00 0.00 0.00 2.59
460 556 3.071457 AGGTGAAATTTTGAAGGGCTTGG 59.929 43.478 0.00 0.00 0.00 3.61
462 558 3.966665 TCAGGTGAAATTTTGAAGGGCTT 59.033 39.130 0.00 0.00 0.00 4.35
463 559 3.575805 TCAGGTGAAATTTTGAAGGGCT 58.424 40.909 0.00 0.00 0.00 5.19
464 560 4.541973 ATCAGGTGAAATTTTGAAGGGC 57.458 40.909 0.00 0.00 0.00 5.19
465 561 9.154847 GAAAATATCAGGTGAAATTTTGAAGGG 57.845 33.333 0.00 0.00 33.03 3.95
466 562 9.154847 GGAAAATATCAGGTGAAATTTTGAAGG 57.845 33.333 0.00 0.00 33.03 3.46
467 563 9.933723 AGGAAAATATCAGGTGAAATTTTGAAG 57.066 29.630 0.00 0.00 33.03 3.02
493 589 6.541907 TGTCCATTGGCTTGCAGAATATATA 58.458 36.000 0.00 0.00 0.00 0.86
494 590 5.387788 TGTCCATTGGCTTGCAGAATATAT 58.612 37.500 0.00 0.00 0.00 0.86
495 591 4.790937 TGTCCATTGGCTTGCAGAATATA 58.209 39.130 0.00 0.00 0.00 0.86
496 592 3.634504 TGTCCATTGGCTTGCAGAATAT 58.365 40.909 0.00 0.00 0.00 1.28
520 616 0.865111 TCATGTTCGAGTTTGGTGCG 59.135 50.000 0.00 0.00 0.00 5.34
548 649 4.395854 TGGCATCAAACTACTTGCTATGTG 59.604 41.667 0.00 0.00 34.76 3.21
598 699 1.886886 TAAGTCTTCACCAAACGGGC 58.113 50.000 0.00 0.00 42.05 6.13
599 700 2.225727 GCTTAAGTCTTCACCAAACGGG 59.774 50.000 4.02 0.00 44.81 5.28
601 702 3.807622 TCTGCTTAAGTCTTCACCAAACG 59.192 43.478 4.02 0.00 0.00 3.60
652 753 4.024218 CAGCTAGCTGCAGAATGGTTATTC 60.024 45.833 30.62 0.00 45.94 1.75
679 781 1.004679 TAACTTGTTCGGCCGGACC 60.005 57.895 33.27 17.49 0.00 4.46
751 853 7.255942 GGTTTAGGTAGCATATGCATTGGAAAT 60.256 37.037 28.62 8.65 45.16 2.17
752 854 6.040391 GGTTTAGGTAGCATATGCATTGGAAA 59.960 38.462 28.62 18.51 45.16 3.13
753 855 5.534654 GGTTTAGGTAGCATATGCATTGGAA 59.465 40.000 28.62 14.07 45.16 3.53
754 856 5.070001 GGTTTAGGTAGCATATGCATTGGA 58.930 41.667 28.62 8.83 45.16 3.53
755 857 4.826733 TGGTTTAGGTAGCATATGCATTGG 59.173 41.667 28.62 0.00 45.16 3.16
756 858 6.389830 TTGGTTTAGGTAGCATATGCATTG 57.610 37.500 28.62 4.47 45.16 2.82
757 859 6.833416 TCTTTGGTTTAGGTAGCATATGCATT 59.167 34.615 28.62 12.35 45.16 3.56
758 860 6.364701 TCTTTGGTTTAGGTAGCATATGCAT 58.635 36.000 28.62 16.04 45.16 3.96
759 861 5.750524 TCTTTGGTTTAGGTAGCATATGCA 58.249 37.500 28.62 12.53 45.16 3.96
760 862 6.884280 ATCTTTGGTTTAGGTAGCATATGC 57.116 37.500 20.36 20.36 42.49 3.14
764 866 9.084533 TGTTTAAATCTTTGGTTTAGGTAGCAT 57.915 29.630 0.00 0.00 0.00 3.79
821 924 2.775911 TGAGGAGGAAGATGCAGTTG 57.224 50.000 0.00 0.00 0.00 3.16
825 928 5.901413 AGATTTATGAGGAGGAAGATGCA 57.099 39.130 0.00 0.00 0.00 3.96
964 1072 3.071457 TCAGCACTTCTTCTTGTCATGGA 59.929 43.478 0.00 0.00 0.00 3.41
978 1086 1.933853 GCGACGGATTAATCAGCACTT 59.066 47.619 17.07 0.00 0.00 3.16
1014 1126 3.144506 CAGCAGGAAGAACACTGTTGAT 58.855 45.455 0.00 0.00 45.21 2.57
1019 1131 4.199432 ACTATCAGCAGGAAGAACACTG 57.801 45.455 0.00 0.00 37.76 3.66
1033 1145 1.726791 ACACGCTGCGAAAACTATCAG 59.273 47.619 30.47 7.07 0.00 2.90
1044 1156 2.378945 AAGAGCAACAACACGCTGCG 62.379 55.000 21.91 21.91 41.77 5.18
1143 1258 1.153939 CGACCACGAGCTGAAGAGG 60.154 63.158 0.00 0.00 42.66 3.69
1179 1294 0.962356 TCTCCTTCGGGGTCACGTAC 60.962 60.000 0.00 0.00 36.25 3.67
1434 1564 2.029964 TTCTTGACCGGCGTGACC 59.970 61.111 6.01 0.00 0.00 4.02
1481 1611 4.103357 GTGCAATGCAATGTTCAGAGATC 58.897 43.478 10.44 0.00 41.47 2.75
1512 1651 4.692625 CGCTAACTGAAATCCTGATATGGG 59.307 45.833 0.00 0.00 0.00 4.00
1517 1656 3.266510 TGCGCTAACTGAAATCCTGAT 57.733 42.857 9.73 0.00 0.00 2.90
1551 1697 3.435105 TCCTGCAACACAATTTCACAC 57.565 42.857 0.00 0.00 0.00 3.82
1553 1706 2.796593 GCTTCCTGCAACACAATTTCAC 59.203 45.455 0.00 0.00 42.31 3.18
1802 1962 1.827789 GTGCCAAGTGCCAACCTGA 60.828 57.895 0.00 0.00 40.16 3.86
1828 1990 4.873827 TGAAGAGTTCGTTAGCTTGTTGTT 59.126 37.500 0.00 0.00 0.00 2.83
1829 1991 4.439057 TGAAGAGTTCGTTAGCTTGTTGT 58.561 39.130 0.00 0.00 0.00 3.32
1830 1992 4.745125 TCTGAAGAGTTCGTTAGCTTGTTG 59.255 41.667 0.00 0.00 0.00 3.33
1871 2033 9.396022 TCCATCAGATTAGAGTAACAAAATTCC 57.604 33.333 0.00 0.00 0.00 3.01
1873 2035 9.739276 TGTCCATCAGATTAGAGTAACAAAATT 57.261 29.630 0.00 0.00 0.00 1.82
1906 2070 6.460399 GGCTAAGTACGAGATCAGATCAAAGT 60.460 42.308 13.14 10.97 0.00 2.66
1914 2078 2.034812 GTGGGGCTAAGTACGAGATCAG 59.965 54.545 0.00 0.00 0.00 2.90
1924 2091 0.475828 ACCTTGGAGTGGGGCTAAGT 60.476 55.000 0.00 0.00 0.00 2.24
2037 2217 1.153667 GAAGTCTCTGCTCCCTGCG 60.154 63.158 0.00 0.00 46.63 5.18
2094 2274 9.194972 TCTGCTCTATTATCATGGTAGATAAGG 57.805 37.037 0.00 0.00 42.06 2.69
2170 2352 4.249020 CAAGCCACGCGCACACAA 62.249 61.111 5.73 0.00 41.38 3.33
2323 2505 2.103941 GCCCCTCTTGATCCTGAAGTAG 59.896 54.545 0.00 0.00 0.00 2.57
2443 2625 0.175760 TCAGAGACACCTTATGCCGC 59.824 55.000 0.00 0.00 0.00 6.53
2452 2634 3.654414 ACGAATGAGTTTCAGAGACACC 58.346 45.455 0.00 0.00 33.66 4.16
2453 2635 4.745125 TGAACGAATGAGTTTCAGAGACAC 59.255 41.667 0.00 0.00 34.00 3.67
2458 2640 6.308041 CGAACTATGAACGAATGAGTTTCAGA 59.692 38.462 0.00 0.00 34.00 3.27
2471 2653 3.423123 GCACTTGGAACGAACTATGAACG 60.423 47.826 0.00 0.00 0.00 3.95
2472 2654 3.746492 AGCACTTGGAACGAACTATGAAC 59.254 43.478 0.00 0.00 0.00 3.18
2474 2656 3.678056 AGCACTTGGAACGAACTATGA 57.322 42.857 0.00 0.00 0.00 2.15
2475 2657 3.307242 GCTAGCACTTGGAACGAACTATG 59.693 47.826 10.63 0.00 0.00 2.23
2476 2658 3.056107 TGCTAGCACTTGGAACGAACTAT 60.056 43.478 14.93 0.00 0.00 2.12
2478 2660 1.070134 TGCTAGCACTTGGAACGAACT 59.930 47.619 14.93 0.00 0.00 3.01
2526 2716 1.916651 CTGATGCTTCGTGTTCGAGAG 59.083 52.381 0.00 0.00 46.81 3.20
2530 2720 0.094216 CTGCTGATGCTTCGTGTTCG 59.906 55.000 0.00 0.00 40.48 3.95
2543 2733 5.914033 ACTACTAACTTGTTTGACTGCTGA 58.086 37.500 0.00 0.00 0.00 4.26
2563 2753 6.495872 ACCGGAGCCATATAATTTACAGACTA 59.504 38.462 9.46 0.00 0.00 2.59
2564 2754 5.307196 ACCGGAGCCATATAATTTACAGACT 59.693 40.000 9.46 0.00 0.00 3.24
2578 2769 1.561542 AGATTTTCTCACCGGAGCCAT 59.438 47.619 9.46 0.00 41.13 4.40
2635 2826 4.159120 GTGTTTGCCGAAAATAGAAGAGC 58.841 43.478 0.00 0.00 0.00 4.09
2643 2834 1.068434 CCCACTGTGTTTGCCGAAAAT 59.932 47.619 7.08 0.00 0.00 1.82
2673 2866 2.016961 CTCAATCGACATTGCCCCG 58.983 57.895 0.00 0.00 39.56 5.73
2710 2903 3.508012 GTCTCTGTCACACATGTAGGAGT 59.492 47.826 0.00 0.00 0.00 3.85
2711 2904 3.119316 GGTCTCTGTCACACATGTAGGAG 60.119 52.174 0.00 0.76 0.00 3.69
2712 2905 2.826128 GGTCTCTGTCACACATGTAGGA 59.174 50.000 0.00 0.00 0.00 2.94
2713 2906 2.562738 TGGTCTCTGTCACACATGTAGG 59.437 50.000 0.00 0.00 0.00 3.18
2714 2907 3.942130 TGGTCTCTGTCACACATGTAG 57.058 47.619 0.00 0.00 0.00 2.74
2715 2908 3.244078 GGTTGGTCTCTGTCACACATGTA 60.244 47.826 0.00 0.00 0.00 2.29
2716 2909 2.485479 GGTTGGTCTCTGTCACACATGT 60.485 50.000 0.00 0.00 0.00 3.21
2727 2920 0.318762 GTTGCGAGAGGTTGGTCTCT 59.681 55.000 0.00 0.00 45.87 3.10
2730 2923 0.951040 CCAGTTGCGAGAGGTTGGTC 60.951 60.000 0.00 0.00 0.00 4.02
2796 2992 8.573035 ACGAATTGCCTTTTTATTCTCTTTACA 58.427 29.630 0.00 0.00 0.00 2.41
2797 2993 8.965986 ACGAATTGCCTTTTTATTCTCTTTAC 57.034 30.769 0.00 0.00 0.00 2.01
2803 2999 8.793592 AGTTAAGACGAATTGCCTTTTTATTCT 58.206 29.630 0.00 0.00 0.00 2.40
2804 3000 8.965986 AGTTAAGACGAATTGCCTTTTTATTC 57.034 30.769 0.00 0.00 0.00 1.75
2811 3007 6.093633 GGTGATTAGTTAAGACGAATTGCCTT 59.906 38.462 0.00 0.00 32.24 4.35
2813 3009 5.353123 TGGTGATTAGTTAAGACGAATTGCC 59.647 40.000 0.00 0.00 32.24 4.52
2815 3011 7.962918 CCTTTGGTGATTAGTTAAGACGAATTG 59.037 37.037 0.00 0.00 32.24 2.32
2816 3012 7.664318 ACCTTTGGTGATTAGTTAAGACGAATT 59.336 33.333 0.00 0.00 32.98 2.17
2820 3016 5.350640 GGACCTTTGGTGATTAGTTAAGACG 59.649 44.000 0.00 0.00 35.25 4.18
2825 3021 6.445786 ACCATAGGACCTTTGGTGATTAGTTA 59.554 38.462 29.60 0.00 42.52 2.24
2830 3026 3.852578 AGACCATAGGACCTTTGGTGATT 59.147 43.478 33.66 19.26 43.74 2.57
2835 3031 3.134804 CCACTAGACCATAGGACCTTTGG 59.865 52.174 24.90 24.90 38.30 3.28
3021 4850 9.774742 GCTCGTATTTTTGTAATTCTCTTCAAT 57.225 29.630 0.00 0.00 0.00 2.57
3022 4851 8.779303 TGCTCGTATTTTTGTAATTCTCTTCAA 58.221 29.630 0.00 0.00 0.00 2.69
3023 4852 8.227791 GTGCTCGTATTTTTGTAATTCTCTTCA 58.772 33.333 0.00 0.00 0.00 3.02
3024 4853 8.227791 TGTGCTCGTATTTTTGTAATTCTCTTC 58.772 33.333 0.00 0.00 0.00 2.87
3025 4854 8.094798 TGTGCTCGTATTTTTGTAATTCTCTT 57.905 30.769 0.00 0.00 0.00 2.85
3071 4900 1.786937 ATGTCTAGGCTCCAGTCCAG 58.213 55.000 0.00 0.00 0.00 3.86
3072 4901 2.950781 CTATGTCTAGGCTCCAGTCCA 58.049 52.381 0.00 0.00 0.00 4.02
3073 4902 1.616374 GCTATGTCTAGGCTCCAGTCC 59.384 57.143 0.00 0.00 0.00 3.85
3074 4903 2.556622 GAGCTATGTCTAGGCTCCAGTC 59.443 54.545 6.66 0.00 44.46 3.51
3075 4904 2.593026 GAGCTATGTCTAGGCTCCAGT 58.407 52.381 6.66 0.00 44.46 4.00
3118 4947 5.469421 CCTTTCATATCTCCTTCTGCATCAC 59.531 44.000 0.00 0.00 0.00 3.06
3134 4963 2.495155 TGCAAGCTGCTCCTTTCATA 57.505 45.000 1.00 0.00 45.31 2.15
3145 4974 6.774354 AAAATGAGTTACAAATGCAAGCTG 57.226 33.333 0.00 0.00 0.00 4.24
3166 4995 7.026562 CGTCAAATTGTATAGATGCCACAAAA 58.973 34.615 0.00 0.00 35.91 2.44
3171 5000 4.814234 GTCCGTCAAATTGTATAGATGCCA 59.186 41.667 0.00 0.00 0.00 4.92
3180 5009 6.193514 TCGTAGTATGTCCGTCAAATTGTA 57.806 37.500 0.00 0.00 0.00 2.41
3181 5010 5.063180 TCGTAGTATGTCCGTCAAATTGT 57.937 39.130 0.00 0.00 0.00 2.71
3182 5011 6.583912 AATCGTAGTATGTCCGTCAAATTG 57.416 37.500 0.00 0.00 0.00 2.32
3188 5017 3.067180 TGGGAAATCGTAGTATGTCCGTC 59.933 47.826 0.00 0.00 0.00 4.79
3189 5018 3.025978 TGGGAAATCGTAGTATGTCCGT 58.974 45.455 0.00 0.00 0.00 4.69
3190 5019 3.720949 TGGGAAATCGTAGTATGTCCG 57.279 47.619 0.00 0.00 0.00 4.79
3191 5020 5.465724 GTGATTGGGAAATCGTAGTATGTCC 59.534 44.000 0.00 0.00 31.94 4.02
3210 5039 4.019174 CCCTTGATAACTTGGCAGTGATT 58.981 43.478 0.00 0.00 31.60 2.57
3218 5047 3.933332 GACTCGTTCCCTTGATAACTTGG 59.067 47.826 0.00 0.00 0.00 3.61
3222 5051 5.357596 AGACTAGACTCGTTCCCTTGATAAC 59.642 44.000 0.00 0.00 0.00 1.89
3232 5061 6.197468 GCATGTGATAAAGACTAGACTCGTTC 59.803 42.308 0.00 0.00 0.00 3.95
3254 5083 9.211485 CCAAACAGAAGAAAAGAAATAATGCAT 57.789 29.630 0.00 0.00 0.00 3.96
3264 5093 7.231467 AGCCTAATACCAAACAGAAGAAAAGA 58.769 34.615 0.00 0.00 0.00 2.52
3281 5110 5.001232 GGTGCCAATAATCGAAGCCTAATA 58.999 41.667 0.00 0.00 0.00 0.98
3287 5116 0.317020 GCGGTGCCAATAATCGAAGC 60.317 55.000 0.00 0.00 0.00 3.86
3290 5119 1.745232 AAAGCGGTGCCAATAATCGA 58.255 45.000 0.00 0.00 0.00 3.59
3291 5120 3.249799 TGATAAAGCGGTGCCAATAATCG 59.750 43.478 0.00 0.00 0.00 3.34
3294 5123 4.013728 ACTTGATAAAGCGGTGCCAATAA 58.986 39.130 0.00 0.00 0.00 1.40
3298 5127 1.164411 CACTTGATAAAGCGGTGCCA 58.836 50.000 0.00 0.00 0.00 4.92
3305 5134 9.547753 TCACTATTTCTATCCACTTGATAAAGC 57.452 33.333 0.00 0.00 35.53 3.51
3317 5146 8.723942 AACAACATCTGTCACTATTTCTATCC 57.276 34.615 0.00 0.00 37.23 2.59
3341 5170 1.414919 AGTCTGAAGCCACCGTGTTAA 59.585 47.619 0.00 0.00 0.00 2.01
3347 5176 1.272490 TCAAGTAGTCTGAAGCCACCG 59.728 52.381 0.00 0.00 0.00 4.94
3349 5178 3.931578 ACATCAAGTAGTCTGAAGCCAC 58.068 45.455 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.