Multiple sequence alignment - TraesCS6A01G279400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G279400 chr6A 100.000 4295 0 0 1 4295 507088941 507093235 0.000000e+00 7932
1 TraesCS6A01G279400 chr6A 96.266 241 7 1 2187 2427 577861863 577861625 1.120000e-105 394
2 TraesCS6A01G279400 chr6A 95.833 96 4 0 2187 2282 617993995 617993900 5.750000e-34 156
3 TraesCS6A01G279400 chr6B 94.157 1489 52 14 702 2184 552241305 552242764 0.000000e+00 2235
4 TraesCS6A01G279400 chr6B 91.679 1382 85 20 2428 3803 552242766 552244123 0.000000e+00 1888
5 TraesCS6A01G279400 chr6B 87.895 727 45 24 1 698 552240556 552241268 0.000000e+00 815
6 TraesCS6A01G279400 chr6B 82.688 878 119 18 2520 3395 14635144 14634298 0.000000e+00 749
7 TraesCS6A01G279400 chr6B 86.768 461 43 4 3836 4292 552244181 552244627 8.290000e-137 497
8 TraesCS6A01G279400 chr6D 90.734 1403 84 17 2427 3803 366537345 366538727 0.000000e+00 1829
9 TraesCS6A01G279400 chr6D 88.280 1459 89 32 1 1417 366534866 366536284 0.000000e+00 1672
10 TraesCS6A01G279400 chr6D 97.025 605 11 3 1490 2090 366536680 366537281 0.000000e+00 1011
11 TraesCS6A01G279400 chr6D 91.774 389 28 3 3837 4222 366538790 366539177 4.890000e-149 538
12 TraesCS6A01G279400 chr6D 92.958 71 5 0 4225 4295 366539273 366539343 2.110000e-18 104
13 TraesCS6A01G279400 chr2A 82.118 878 125 16 2520 3395 733418299 733417452 0.000000e+00 723
14 TraesCS6A01G279400 chr2A 99.170 241 1 1 2187 2427 712558918 712558679 2.370000e-117 433
15 TraesCS6A01G279400 chr2A 97.942 243 5 0 2187 2429 684405713 684405955 5.140000e-114 422
16 TraesCS6A01G279400 chr2A 97.942 243 5 0 2187 2429 684428661 684428903 5.140000e-114 422
17 TraesCS6A01G279400 chr2A 97.925 241 5 0 2187 2427 740092134 740091894 6.640000e-113 418
18 TraesCS6A01G279400 chr5A 81.777 878 128 16 2520 3395 688482112 688482959 0.000000e+00 706
19 TraesCS6A01G279400 chr4B 81.364 880 119 24 2520 3394 483094245 483093406 0.000000e+00 675
20 TraesCS6A01G279400 chr4A 81.551 851 121 22 2520 3367 577728351 577729168 0.000000e+00 669
21 TraesCS6A01G279400 chr3A 98.745 239 3 0 2189 2427 428343402 428343164 3.970000e-115 425
22 TraesCS6A01G279400 chr3A 98.701 231 3 0 2197 2427 685586913 685586683 1.110000e-110 411
23 TraesCS6A01G279400 chr3A 99.412 170 1 0 2197 2366 685543309 685543140 4.170000e-80 309
24 TraesCS6A01G279400 chr3A 99.333 150 1 0 2278 2427 685586652 685586503 5.470000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G279400 chr6A 507088941 507093235 4294 False 7932.00 7932 100.00000 1 4295 1 chr6A.!!$F1 4294
1 TraesCS6A01G279400 chr6B 552240556 552244627 4071 False 1358.75 2235 90.12475 1 4292 4 chr6B.!!$F1 4291
2 TraesCS6A01G279400 chr6B 14634298 14635144 846 True 749.00 749 82.68800 2520 3395 1 chr6B.!!$R1 875
3 TraesCS6A01G279400 chr6D 366534866 366539343 4477 False 1030.80 1829 92.15420 1 4295 5 chr6D.!!$F1 4294
4 TraesCS6A01G279400 chr2A 733417452 733418299 847 True 723.00 723 82.11800 2520 3395 1 chr2A.!!$R2 875
5 TraesCS6A01G279400 chr5A 688482112 688482959 847 False 706.00 706 81.77700 2520 3395 1 chr5A.!!$F1 875
6 TraesCS6A01G279400 chr4B 483093406 483094245 839 True 675.00 675 81.36400 2520 3394 1 chr4B.!!$R1 874
7 TraesCS6A01G279400 chr4A 577728351 577729168 817 False 669.00 669 81.55100 2520 3367 1 chr4A.!!$F1 847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 782 0.033366 AATTTGTGCCGGTTTCCAGC 59.967 50.0 1.90 0.0 0.0 4.85 F
961 1023 0.383231 CTCGCCATCATTTTCCCTGC 59.617 55.0 0.00 0.0 0.0 4.85 F
2348 2750 0.033503 TGGGCAGTGTCGGATCTCTA 60.034 55.0 0.00 0.0 0.0 2.43 F
2390 2792 0.615850 AAAGAGGCCACTGTAGCTCC 59.384 55.0 5.01 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2329 2731 0.033503 TAGAGATCCGACACTGCCCA 60.034 55.0 0.0 0.00 0.00 5.36 R
2371 2773 0.615850 GGAGCTACAGTGGCCTCTTT 59.384 55.0 4.1 0.99 0.00 2.52 R
3216 3645 0.244721 GTTGGCTGATGGCTTTCACC 59.755 55.0 0.0 0.00 41.46 4.02 R
3710 4142 0.253894 ACGGCTAACCATAACACCCC 59.746 55.0 0.0 0.00 34.57 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 198 0.534203 AACGCCGCTGGAAAGAGAAA 60.534 50.000 0.00 0.00 0.00 2.52
186 199 0.951040 ACGCCGCTGGAAAGAGAAAG 60.951 55.000 0.00 0.00 0.00 2.62
191 204 3.274288 CCGCTGGAAAGAGAAAGCTATT 58.726 45.455 0.00 0.00 33.41 1.73
216 229 0.687354 TTCAGTCTCACCTCCTTGCC 59.313 55.000 0.00 0.00 0.00 4.52
506 525 7.678947 ATCTTCAGGTTCATTGTTTCTGTAG 57.321 36.000 0.00 0.00 0.00 2.74
533 552 6.147164 ACTTGTGTTTAACCATACTGACATCG 59.853 38.462 0.00 0.00 0.00 3.84
546 570 1.078709 GACATCGCTGCTGCTACAAA 58.921 50.000 14.03 0.00 36.97 2.83
555 579 4.406943 GCTGCTGCTACAAACTTTCATAC 58.593 43.478 8.53 0.00 36.03 2.39
564 588 5.514274 ACAAACTTTCATACCCAGTGTTG 57.486 39.130 0.00 0.00 0.00 3.33
566 590 5.067283 ACAAACTTTCATACCCAGTGTTGTC 59.933 40.000 0.00 0.00 0.00 3.18
568 592 3.394606 ACTTTCATACCCAGTGTTGTCCT 59.605 43.478 0.00 0.00 0.00 3.85
570 594 5.072600 ACTTTCATACCCAGTGTTGTCCTTA 59.927 40.000 0.00 0.00 0.00 2.69
571 595 4.819105 TCATACCCAGTGTTGTCCTTAG 57.181 45.455 0.00 0.00 0.00 2.18
573 597 4.595781 TCATACCCAGTGTTGTCCTTAGTT 59.404 41.667 0.00 0.00 0.00 2.24
574 598 3.945640 ACCCAGTGTTGTCCTTAGTTT 57.054 42.857 0.00 0.00 0.00 2.66
575 599 3.816994 ACCCAGTGTTGTCCTTAGTTTC 58.183 45.455 0.00 0.00 0.00 2.78
576 600 3.458487 ACCCAGTGTTGTCCTTAGTTTCT 59.542 43.478 0.00 0.00 0.00 2.52
577 601 4.065789 CCCAGTGTTGTCCTTAGTTTCTC 58.934 47.826 0.00 0.00 0.00 2.87
583 607 7.065803 CAGTGTTGTCCTTAGTTTCTCTTTTCA 59.934 37.037 0.00 0.00 0.00 2.69
584 608 7.281100 AGTGTTGTCCTTAGTTTCTCTTTTCAG 59.719 37.037 0.00 0.00 0.00 3.02
585 609 6.038271 TGTTGTCCTTAGTTTCTCTTTTCAGC 59.962 38.462 0.00 0.00 0.00 4.26
586 610 4.750098 TGTCCTTAGTTTCTCTTTTCAGCG 59.250 41.667 0.00 0.00 0.00 5.18
587 611 4.750598 GTCCTTAGTTTCTCTTTTCAGCGT 59.249 41.667 0.00 0.00 0.00 5.07
588 612 5.924825 GTCCTTAGTTTCTCTTTTCAGCGTA 59.075 40.000 0.00 0.00 0.00 4.42
589 613 6.423001 GTCCTTAGTTTCTCTTTTCAGCGTAA 59.577 38.462 0.00 0.00 0.00 3.18
590 614 6.987992 TCCTTAGTTTCTCTTTTCAGCGTAAA 59.012 34.615 0.00 0.00 0.00 2.01
591 615 7.496591 TCCTTAGTTTCTCTTTTCAGCGTAAAA 59.503 33.333 0.36 0.36 0.00 1.52
621 645 8.797266 AAAGCTTTTTACTCCTATTTTTGTCG 57.203 30.769 5.69 0.00 0.00 4.35
623 647 6.016610 AGCTTTTTACTCCTATTTTTGTCGCA 60.017 34.615 0.00 0.00 0.00 5.10
624 648 6.639279 GCTTTTTACTCCTATTTTTGTCGCAA 59.361 34.615 0.00 0.00 0.00 4.85
625 649 7.328493 GCTTTTTACTCCTATTTTTGTCGCAAT 59.672 33.333 0.00 0.00 0.00 3.56
626 650 9.191995 CTTTTTACTCCTATTTTTGTCGCAATT 57.808 29.630 0.00 0.00 0.00 2.32
628 652 8.736751 TTTACTCCTATTTTTGTCGCAATTTC 57.263 30.769 0.00 0.00 0.00 2.17
629 653 5.709966 ACTCCTATTTTTGTCGCAATTTCC 58.290 37.500 0.00 0.00 0.00 3.13
630 654 5.242838 ACTCCTATTTTTGTCGCAATTTCCA 59.757 36.000 0.00 0.00 0.00 3.53
631 655 5.708948 TCCTATTTTTGTCGCAATTTCCAG 58.291 37.500 0.00 0.00 0.00 3.86
632 656 5.242838 TCCTATTTTTGTCGCAATTTCCAGT 59.757 36.000 0.00 0.00 0.00 4.00
634 658 7.040340 TCCTATTTTTGTCGCAATTTCCAGTAA 60.040 33.333 0.00 0.00 0.00 2.24
635 659 7.596995 CCTATTTTTGTCGCAATTTCCAGTAAA 59.403 33.333 0.00 0.00 0.00 2.01
636 660 7.778470 ATTTTTGTCGCAATTTCCAGTAAAA 57.222 28.000 0.00 0.00 0.00 1.52
644 669 5.925969 CGCAATTTCCAGTAAAAGAAATGGT 59.074 36.000 0.00 0.00 40.84 3.55
646 671 6.705825 GCAATTTCCAGTAAAAGAAATGGTGT 59.294 34.615 0.00 0.00 40.84 4.16
647 672 7.307337 GCAATTTCCAGTAAAAGAAATGGTGTG 60.307 37.037 0.00 0.00 40.84 3.82
650 675 6.817765 TCCAGTAAAAGAAATGGTGTGATC 57.182 37.500 0.00 0.00 34.32 2.92
673 698 7.448748 TCTCCAGTAATTTTTACTGCCTTTC 57.551 36.000 17.85 0.00 42.53 2.62
678 704 6.002082 AGTAATTTTTACTGCCTTTCGACCT 58.998 36.000 0.00 0.00 0.00 3.85
681 707 3.695830 TTTACTGCCTTTCGACCTCAT 57.304 42.857 0.00 0.00 0.00 2.90
682 708 2.961526 TACTGCCTTTCGACCTCATC 57.038 50.000 0.00 0.00 0.00 2.92
693 719 1.469703 CGACCTCATCTGCAATGCAAA 59.530 47.619 9.92 0.00 38.41 3.68
694 720 2.477357 CGACCTCATCTGCAATGCAAAG 60.477 50.000 9.92 4.62 38.41 2.77
695 721 2.751259 GACCTCATCTGCAATGCAAAGA 59.249 45.455 9.92 4.32 38.41 2.52
698 724 4.142227 ACCTCATCTGCAATGCAAAGATTC 60.142 41.667 9.92 0.00 38.41 2.52
699 725 4.360563 CTCATCTGCAATGCAAAGATTCC 58.639 43.478 9.92 0.00 38.41 3.01
700 726 4.021229 TCATCTGCAATGCAAAGATTCCT 58.979 39.130 9.92 0.00 38.41 3.36
704 762 2.892215 TGCAATGCAAAGATTCCTGTGA 59.108 40.909 5.01 0.00 34.76 3.58
708 766 5.410439 GCAATGCAAAGATTCCTGTGAAATT 59.590 36.000 0.00 0.00 33.32 1.82
720 778 2.794350 CTGTGAAATTTGTGCCGGTTTC 59.206 45.455 1.90 4.58 0.00 2.78
724 782 0.033366 AATTTGTGCCGGTTTCCAGC 59.967 50.000 1.90 0.00 0.00 4.85
745 806 7.885922 TCCAGCAAACCTATTGTTACTAATCAA 59.114 33.333 0.00 0.00 35.67 2.57
754 815 9.226606 CCTATTGTTACTAATCAACACCTGAAA 57.773 33.333 0.00 0.00 37.67 2.69
757 818 8.458573 TTGTTACTAATCAACACCTGAAATGT 57.541 30.769 0.00 0.00 37.67 2.71
758 819 7.870826 TGTTACTAATCAACACCTGAAATGTG 58.129 34.615 0.00 0.00 37.67 3.21
762 823 6.772716 ACTAATCAACACCTGAAATGTGAAGT 59.227 34.615 0.00 0.00 37.67 3.01
767 828 2.880268 CACCTGAAATGTGAAGTGCTCA 59.120 45.455 0.00 0.00 34.07 4.26
771 832 2.291465 TGAAATGTGAAGTGCTCAGTGC 59.709 45.455 0.00 0.00 43.25 4.40
786 847 1.188219 AGTGCTCTGGGCGAGAAAGA 61.188 55.000 0.00 0.00 45.43 2.52
796 857 3.087638 CGAGAAAGAGACGTCGCAA 57.912 52.632 21.54 0.00 0.00 4.85
797 858 0.703466 CGAGAAAGAGACGTCGCAAC 59.297 55.000 21.54 11.38 0.00 4.17
948 1010 3.735704 TGGAAATCCAAACTCGCCA 57.264 47.368 0.00 0.00 44.35 5.69
949 1011 2.214376 TGGAAATCCAAACTCGCCAT 57.786 45.000 0.00 0.00 44.35 4.40
961 1023 0.383231 CTCGCCATCATTTTCCCTGC 59.617 55.000 0.00 0.00 0.00 4.85
973 1040 3.838271 CCCTGCTTCGCTCGCCTA 61.838 66.667 0.00 0.00 0.00 3.93
1047 1114 1.836383 CGTACTCGTATTGTCCTGGC 58.164 55.000 0.00 0.00 0.00 4.85
1048 1115 1.133598 CGTACTCGTATTGTCCTGGCA 59.866 52.381 0.00 0.00 0.00 4.92
1049 1116 2.794981 CGTACTCGTATTGTCCTGGCAG 60.795 54.545 7.75 7.75 0.00 4.85
1177 1244 1.964552 CGTCTCGATACCACCTACCT 58.035 55.000 0.00 0.00 0.00 3.08
1272 1342 2.413765 GACGAGATGGAGGTCGCC 59.586 66.667 0.00 0.00 39.89 5.54
1446 1516 4.902258 GCCCCCTCCCCCTACCTC 62.902 77.778 0.00 0.00 0.00 3.85
1447 1517 4.188511 CCCCCTCCCCCTACCTCC 62.189 77.778 0.00 0.00 0.00 4.30
1448 1518 4.188511 CCCCTCCCCCTACCTCCC 62.189 77.778 0.00 0.00 0.00 4.30
1449 1519 4.188511 CCCTCCCCCTACCTCCCC 62.189 77.778 0.00 0.00 0.00 4.81
1450 1520 3.043404 CCTCCCCCTACCTCCCCT 61.043 72.222 0.00 0.00 0.00 4.79
1453 1523 3.043404 CCCCCTACCTCCCCTCCT 61.043 72.222 0.00 0.00 0.00 3.69
1479 1549 4.464244 TCGATTCTGTTCAACCTCTCTCAT 59.536 41.667 0.00 0.00 0.00 2.90
1484 1554 6.274157 TCTGTTCAACCTCTCTCATCTAAC 57.726 41.667 0.00 0.00 0.00 2.34
1880 2273 1.813859 CTTCGAGACCGGCATACCA 59.186 57.895 0.00 0.00 36.24 3.25
1950 2343 2.391678 CCCAGCCATTTCCTGCTAATT 58.608 47.619 0.00 0.00 35.69 1.40
1980 2374 2.223782 TGCTGTGAATCCTTGTTGTTGC 60.224 45.455 0.00 0.00 0.00 4.17
1981 2375 2.035066 GCTGTGAATCCTTGTTGTTGCT 59.965 45.455 0.00 0.00 0.00 3.91
1982 2376 3.635331 CTGTGAATCCTTGTTGTTGCTG 58.365 45.455 0.00 0.00 0.00 4.41
1983 2377 2.223782 TGTGAATCCTTGTTGTTGCTGC 60.224 45.455 0.00 0.00 0.00 5.25
2080 2478 2.281208 TCGTTGGCCAACTTCCCG 60.281 61.111 38.38 27.88 39.08 5.14
2095 2493 2.262915 CCGGTGGTCAGTCTGCTC 59.737 66.667 0.00 0.00 0.00 4.26
2103 2501 1.427435 GTCAGTCTGCTCTTCTGTGC 58.573 55.000 0.00 0.00 0.00 4.57
2184 2586 2.417586 ACGCGGTATTAAGTTTTCAGGC 59.582 45.455 12.47 0.00 0.00 4.85
2185 2587 2.223180 CGCGGTATTAAGTTTTCAGGCC 60.223 50.000 0.00 0.00 0.00 5.19
2186 2588 3.014623 GCGGTATTAAGTTTTCAGGCCT 58.985 45.455 0.00 0.00 0.00 5.19
2187 2589 3.064958 GCGGTATTAAGTTTTCAGGCCTC 59.935 47.826 0.00 0.00 0.00 4.70
2188 2590 4.258543 CGGTATTAAGTTTTCAGGCCTCA 58.741 43.478 0.00 0.00 0.00 3.86
2189 2591 4.332819 CGGTATTAAGTTTTCAGGCCTCAG 59.667 45.833 0.00 0.00 0.00 3.35
2190 2592 5.497474 GGTATTAAGTTTTCAGGCCTCAGA 58.503 41.667 0.00 0.00 0.00 3.27
2191 2593 6.122964 GGTATTAAGTTTTCAGGCCTCAGAT 58.877 40.000 0.00 0.00 0.00 2.90
2192 2594 6.261158 GGTATTAAGTTTTCAGGCCTCAGATC 59.739 42.308 0.00 0.00 0.00 2.75
2193 2595 2.797177 AGTTTTCAGGCCTCAGATCC 57.203 50.000 0.00 0.00 0.00 3.36
2194 2596 2.273619 AGTTTTCAGGCCTCAGATCCT 58.726 47.619 0.00 0.00 0.00 3.24
2195 2597 2.238395 AGTTTTCAGGCCTCAGATCCTC 59.762 50.000 0.00 0.00 0.00 3.71
2196 2598 2.238395 GTTTTCAGGCCTCAGATCCTCT 59.762 50.000 0.00 0.00 0.00 3.69
2197 2599 1.493861 TTCAGGCCTCAGATCCTCTG 58.506 55.000 0.00 0.00 45.59 3.35
2210 2612 5.725551 AGATCCTCTGACTTAGGAAGAGA 57.274 43.478 12.94 3.01 46.06 3.10
2211 2613 6.086011 AGATCCTCTGACTTAGGAAGAGAA 57.914 41.667 12.94 0.00 46.06 2.87
2212 2614 6.129179 AGATCCTCTGACTTAGGAAGAGAAG 58.871 44.000 12.94 1.09 46.06 2.85
2213 2615 5.263872 TCCTCTGACTTAGGAAGAGAAGT 57.736 43.478 12.94 0.00 40.23 3.01
2214 2616 5.891551 ATCCTCTGACTTAGGAAGAGAAGTC 59.108 44.000 12.94 7.64 46.06 3.01
2219 2621 3.445987 ACTTAGGAAGAGAAGTCAGGGG 58.554 50.000 0.00 0.00 29.85 4.79
2220 2622 3.077695 ACTTAGGAAGAGAAGTCAGGGGA 59.922 47.826 0.00 0.00 29.85 4.81
2221 2623 2.723530 AGGAAGAGAAGTCAGGGGAA 57.276 50.000 0.00 0.00 0.00 3.97
2222 2624 2.545810 AGGAAGAGAAGTCAGGGGAAG 58.454 52.381 0.00 0.00 0.00 3.46
2223 2625 1.065782 GGAAGAGAAGTCAGGGGAAGC 60.066 57.143 0.00 0.00 0.00 3.86
2224 2626 1.905894 GAAGAGAAGTCAGGGGAAGCT 59.094 52.381 0.00 0.00 0.00 3.74
2225 2627 2.930109 AGAGAAGTCAGGGGAAGCTA 57.070 50.000 0.00 0.00 0.00 3.32
2226 2628 2.462723 AGAGAAGTCAGGGGAAGCTAC 58.537 52.381 0.00 0.00 0.00 3.58
2227 2629 2.180276 GAGAAGTCAGGGGAAGCTACA 58.820 52.381 0.00 0.00 0.00 2.74
2228 2630 2.167487 GAGAAGTCAGGGGAAGCTACAG 59.833 54.545 0.00 0.00 0.00 2.74
2229 2631 1.903183 GAAGTCAGGGGAAGCTACAGT 59.097 52.381 0.00 0.00 0.00 3.55
2230 2632 2.921834 AGTCAGGGGAAGCTACAGTA 57.078 50.000 0.00 0.00 0.00 2.74
2231 2633 2.741145 AGTCAGGGGAAGCTACAGTAG 58.259 52.381 2.85 2.85 0.00 2.57
2244 2646 4.744795 CTACAGTAGCATGACTTCCCTT 57.255 45.455 0.00 0.00 0.00 3.95
2245 2647 3.618690 ACAGTAGCATGACTTCCCTTC 57.381 47.619 0.00 0.00 0.00 3.46
2246 2648 3.177228 ACAGTAGCATGACTTCCCTTCT 58.823 45.455 0.00 0.00 0.00 2.85
2247 2649 3.196685 ACAGTAGCATGACTTCCCTTCTC 59.803 47.826 0.00 0.00 0.00 2.87
2248 2650 3.450457 CAGTAGCATGACTTCCCTTCTCT 59.550 47.826 0.00 0.00 0.00 3.10
2249 2651 4.646945 CAGTAGCATGACTTCCCTTCTCTA 59.353 45.833 0.00 0.00 0.00 2.43
2250 2652 4.892934 AGTAGCATGACTTCCCTTCTCTAG 59.107 45.833 0.00 0.00 0.00 2.43
2251 2653 3.987745 AGCATGACTTCCCTTCTCTAGA 58.012 45.455 0.00 0.00 0.00 2.43
2252 2654 4.555689 AGCATGACTTCCCTTCTCTAGAT 58.444 43.478 0.00 0.00 0.00 1.98
2253 2655 4.968080 AGCATGACTTCCCTTCTCTAGATT 59.032 41.667 0.00 0.00 0.00 2.40
2254 2656 5.428131 AGCATGACTTCCCTTCTCTAGATTT 59.572 40.000 0.00 0.00 0.00 2.17
2255 2657 6.069731 AGCATGACTTCCCTTCTCTAGATTTT 60.070 38.462 0.00 0.00 0.00 1.82
2256 2658 6.259829 GCATGACTTCCCTTCTCTAGATTTTC 59.740 42.308 0.00 0.00 0.00 2.29
2257 2659 6.935240 TGACTTCCCTTCTCTAGATTTTCA 57.065 37.500 0.00 0.00 0.00 2.69
2258 2660 7.502060 TGACTTCCCTTCTCTAGATTTTCAT 57.498 36.000 0.00 0.00 0.00 2.57
2259 2661 8.609617 TGACTTCCCTTCTCTAGATTTTCATA 57.390 34.615 0.00 0.00 0.00 2.15
2260 2662 9.046846 TGACTTCCCTTCTCTAGATTTTCATAA 57.953 33.333 0.00 0.00 0.00 1.90
2261 2663 9.541143 GACTTCCCTTCTCTAGATTTTCATAAG 57.459 37.037 0.00 0.00 0.00 1.73
2262 2664 7.990314 ACTTCCCTTCTCTAGATTTTCATAAGC 59.010 37.037 0.00 0.00 0.00 3.09
2263 2665 7.682787 TCCCTTCTCTAGATTTTCATAAGCT 57.317 36.000 0.00 0.00 0.00 3.74
2264 2666 7.504403 TCCCTTCTCTAGATTTTCATAAGCTG 58.496 38.462 0.00 0.00 0.00 4.24
2265 2667 6.204495 CCCTTCTCTAGATTTTCATAAGCTGC 59.796 42.308 0.00 0.00 0.00 5.25
2266 2668 6.765036 CCTTCTCTAGATTTTCATAAGCTGCA 59.235 38.462 1.02 0.00 0.00 4.41
2267 2669 7.281774 CCTTCTCTAGATTTTCATAAGCTGCAA 59.718 37.037 1.02 0.00 0.00 4.08
2268 2670 8.743085 TTCTCTAGATTTTCATAAGCTGCAAT 57.257 30.769 1.02 0.00 0.00 3.56
2269 2671 8.743085 TCTCTAGATTTTCATAAGCTGCAATT 57.257 30.769 1.02 0.00 0.00 2.32
2270 2672 9.182214 TCTCTAGATTTTCATAAGCTGCAATTT 57.818 29.630 1.02 0.00 0.00 1.82
2275 2677 9.143631 AGATTTTCATAAGCTGCAATTTAACAC 57.856 29.630 1.02 0.00 0.00 3.32
2276 2678 8.830201 ATTTTCATAAGCTGCAATTTAACACA 57.170 26.923 1.02 0.00 0.00 3.72
2277 2679 8.654230 TTTTCATAAGCTGCAATTTAACACAA 57.346 26.923 1.02 0.00 0.00 3.33
2278 2680 7.636259 TTCATAAGCTGCAATTTAACACAAC 57.364 32.000 1.02 0.00 0.00 3.32
2279 2681 5.855925 TCATAAGCTGCAATTTAACACAACG 59.144 36.000 1.02 0.00 0.00 4.10
2280 2682 3.980646 AGCTGCAATTTAACACAACGA 57.019 38.095 1.02 0.00 0.00 3.85
2281 2683 4.503741 AGCTGCAATTTAACACAACGAT 57.496 36.364 1.02 0.00 0.00 3.73
2282 2684 4.870363 AGCTGCAATTTAACACAACGATT 58.130 34.783 1.02 0.00 0.00 3.34
2283 2685 6.007936 AGCTGCAATTTAACACAACGATTA 57.992 33.333 1.02 0.00 0.00 1.75
2284 2686 6.620678 AGCTGCAATTTAACACAACGATTAT 58.379 32.000 1.02 0.00 0.00 1.28
2285 2687 6.527722 AGCTGCAATTTAACACAACGATTATG 59.472 34.615 1.02 0.00 0.00 1.90
2286 2688 6.307800 GCTGCAATTTAACACAACGATTATGT 59.692 34.615 0.00 0.00 0.00 2.29
2287 2689 7.483375 GCTGCAATTTAACACAACGATTATGTA 59.517 33.333 0.00 0.00 0.00 2.29
2288 2690 8.662369 TGCAATTTAACACAACGATTATGTAC 57.338 30.769 0.00 0.00 0.00 2.90
2289 2691 8.290325 TGCAATTTAACACAACGATTATGTACA 58.710 29.630 0.00 0.00 0.00 2.90
2290 2692 8.785101 GCAATTTAACACAACGATTATGTACAG 58.215 33.333 0.33 0.00 0.00 2.74
2291 2693 9.820229 CAATTTAACACAACGATTATGTACAGT 57.180 29.630 0.33 0.00 0.00 3.55
2292 2694 9.820229 AATTTAACACAACGATTATGTACAGTG 57.180 29.630 0.33 3.94 0.00 3.66
2293 2695 8.590719 TTTAACACAACGATTATGTACAGTGA 57.409 30.769 12.82 0.00 0.00 3.41
2294 2696 8.766000 TTAACACAACGATTATGTACAGTGAT 57.234 30.769 12.82 5.46 0.00 3.06
2295 2697 7.667043 AACACAACGATTATGTACAGTGATT 57.333 32.000 12.82 3.45 0.00 2.57
2296 2698 7.060600 ACACAACGATTATGTACAGTGATTG 57.939 36.000 12.82 9.25 0.00 2.67
2297 2699 6.649141 ACACAACGATTATGTACAGTGATTGT 59.351 34.615 12.82 9.76 43.96 2.71
2298 2700 7.148639 ACACAACGATTATGTACAGTGATTGTC 60.149 37.037 12.82 0.00 41.29 3.18
2299 2701 6.312918 ACAACGATTATGTACAGTGATTGTCC 59.687 38.462 0.33 0.00 41.29 4.02
2300 2702 5.972935 ACGATTATGTACAGTGATTGTCCA 58.027 37.500 0.33 0.00 41.29 4.02
2301 2703 5.810587 ACGATTATGTACAGTGATTGTCCAC 59.189 40.000 0.33 0.00 41.29 4.02
2302 2704 5.810074 CGATTATGTACAGTGATTGTCCACA 59.190 40.000 0.33 0.00 41.29 4.17
2303 2705 6.019559 CGATTATGTACAGTGATTGTCCACAG 60.020 42.308 0.33 0.00 41.29 3.66
2304 2706 4.623932 ATGTACAGTGATTGTCCACAGT 57.376 40.909 0.33 0.00 41.29 3.55
2305 2707 5.738619 ATGTACAGTGATTGTCCACAGTA 57.261 39.130 0.33 0.00 41.29 2.74
2306 2708 5.538849 TGTACAGTGATTGTCCACAGTAA 57.461 39.130 0.00 0.00 39.55 2.24
2307 2709 6.109156 TGTACAGTGATTGTCCACAGTAAT 57.891 37.500 0.00 0.00 39.55 1.89
2308 2710 6.163476 TGTACAGTGATTGTCCACAGTAATC 58.837 40.000 0.00 0.00 39.55 1.75
2309 2711 5.489792 ACAGTGATTGTCCACAGTAATCT 57.510 39.130 0.00 0.00 39.42 2.40
2310 2712 5.240891 ACAGTGATTGTCCACAGTAATCTG 58.759 41.667 0.00 0.00 40.74 2.90
2311 2713 5.221722 ACAGTGATTGTCCACAGTAATCTGT 60.222 40.000 0.00 0.00 45.42 3.41
2323 2725 5.963140 CAGTAATCTGTGCATCTACAGTG 57.037 43.478 5.89 0.00 46.32 3.66
2324 2726 5.654497 CAGTAATCTGTGCATCTACAGTGA 58.346 41.667 0.00 0.00 46.32 3.41
2325 2727 6.279123 CAGTAATCTGTGCATCTACAGTGAT 58.721 40.000 0.00 0.00 46.32 3.06
2326 2728 6.760298 CAGTAATCTGTGCATCTACAGTGATT 59.240 38.462 0.00 3.17 46.32 2.57
2327 2729 6.983307 AGTAATCTGTGCATCTACAGTGATTC 59.017 38.462 0.00 0.00 46.32 2.52
2328 2730 4.128925 TCTGTGCATCTACAGTGATTCC 57.871 45.455 0.00 0.00 46.32 3.01
2329 2731 3.771479 TCTGTGCATCTACAGTGATTCCT 59.229 43.478 0.00 0.00 46.32 3.36
2330 2732 3.865446 TGTGCATCTACAGTGATTCCTG 58.135 45.455 0.00 0.00 38.45 3.86
2331 2733 3.201290 GTGCATCTACAGTGATTCCTGG 58.799 50.000 0.00 0.00 36.75 4.45
2332 2734 2.171237 TGCATCTACAGTGATTCCTGGG 59.829 50.000 0.00 0.00 36.75 4.45
2333 2735 2.843701 CATCTACAGTGATTCCTGGGC 58.156 52.381 0.00 0.00 36.75 5.36
2334 2736 1.951209 TCTACAGTGATTCCTGGGCA 58.049 50.000 0.00 0.00 36.75 5.36
2335 2737 1.833630 TCTACAGTGATTCCTGGGCAG 59.166 52.381 0.00 0.00 36.75 4.85
2336 2738 1.556911 CTACAGTGATTCCTGGGCAGT 59.443 52.381 0.00 0.00 36.75 4.40
2337 2739 0.037303 ACAGTGATTCCTGGGCAGTG 59.963 55.000 14.25 14.25 38.57 3.66
2338 2740 0.037303 CAGTGATTCCTGGGCAGTGT 59.963 55.000 0.00 0.00 0.00 3.55
2339 2741 0.326264 AGTGATTCCTGGGCAGTGTC 59.674 55.000 0.00 0.00 0.00 3.67
2340 2742 1.021390 GTGATTCCTGGGCAGTGTCG 61.021 60.000 0.00 0.00 0.00 4.35
2341 2743 1.450312 GATTCCTGGGCAGTGTCGG 60.450 63.158 0.00 0.00 0.00 4.79
2342 2744 1.899437 GATTCCTGGGCAGTGTCGGA 61.899 60.000 0.00 0.00 0.00 4.55
2343 2745 1.274703 ATTCCTGGGCAGTGTCGGAT 61.275 55.000 0.00 0.00 0.00 4.18
2344 2746 1.899437 TTCCTGGGCAGTGTCGGATC 61.899 60.000 0.00 0.00 0.00 3.36
2345 2747 2.362369 CCTGGGCAGTGTCGGATCT 61.362 63.158 0.00 0.00 0.00 2.75
2346 2748 1.142748 CTGGGCAGTGTCGGATCTC 59.857 63.158 0.00 0.00 0.00 2.75
2347 2749 1.305297 TGGGCAGTGTCGGATCTCT 60.305 57.895 0.00 0.00 0.00 3.10
2348 2750 0.033503 TGGGCAGTGTCGGATCTCTA 60.034 55.000 0.00 0.00 0.00 2.43
2349 2751 1.112113 GGGCAGTGTCGGATCTCTAA 58.888 55.000 0.00 0.00 0.00 2.10
2350 2752 1.202428 GGGCAGTGTCGGATCTCTAAC 60.202 57.143 0.00 0.00 0.00 2.34
2351 2753 1.751924 GGCAGTGTCGGATCTCTAACT 59.248 52.381 0.00 0.00 0.00 2.24
2352 2754 2.166664 GGCAGTGTCGGATCTCTAACTT 59.833 50.000 0.00 0.00 0.00 2.66
2353 2755 3.182967 GCAGTGTCGGATCTCTAACTTG 58.817 50.000 0.00 0.00 0.00 3.16
2354 2756 3.182967 CAGTGTCGGATCTCTAACTTGC 58.817 50.000 0.00 0.00 0.00 4.01
2355 2757 2.166664 AGTGTCGGATCTCTAACTTGCC 59.833 50.000 0.00 0.00 0.00 4.52
2356 2758 2.166664 GTGTCGGATCTCTAACTTGCCT 59.833 50.000 0.00 0.00 0.00 4.75
2357 2759 2.832129 TGTCGGATCTCTAACTTGCCTT 59.168 45.455 0.00 0.00 0.00 4.35
2358 2760 3.119101 TGTCGGATCTCTAACTTGCCTTC 60.119 47.826 0.00 0.00 0.00 3.46
2359 2761 2.431057 TCGGATCTCTAACTTGCCTTCC 59.569 50.000 0.00 0.00 0.00 3.46
2360 2762 2.168521 CGGATCTCTAACTTGCCTTCCA 59.831 50.000 0.00 0.00 0.00 3.53
2361 2763 3.181461 CGGATCTCTAACTTGCCTTCCAT 60.181 47.826 0.00 0.00 0.00 3.41
2362 2764 4.039245 CGGATCTCTAACTTGCCTTCCATA 59.961 45.833 0.00 0.00 0.00 2.74
2363 2765 5.279708 CGGATCTCTAACTTGCCTTCCATAT 60.280 44.000 0.00 0.00 0.00 1.78
2364 2766 6.538263 GGATCTCTAACTTGCCTTCCATATT 58.462 40.000 0.00 0.00 0.00 1.28
2365 2767 7.001073 GGATCTCTAACTTGCCTTCCATATTT 58.999 38.462 0.00 0.00 0.00 1.40
2366 2768 7.503902 GGATCTCTAACTTGCCTTCCATATTTT 59.496 37.037 0.00 0.00 0.00 1.82
2367 2769 9.561069 GATCTCTAACTTGCCTTCCATATTTTA 57.439 33.333 0.00 0.00 0.00 1.52
2368 2770 8.732746 TCTCTAACTTGCCTTCCATATTTTAC 57.267 34.615 0.00 0.00 0.00 2.01
2369 2771 8.325787 TCTCTAACTTGCCTTCCATATTTTACA 58.674 33.333 0.00 0.00 0.00 2.41
2370 2772 8.276252 TCTAACTTGCCTTCCATATTTTACAC 57.724 34.615 0.00 0.00 0.00 2.90
2371 2773 6.909550 AACTTGCCTTCCATATTTTACACA 57.090 33.333 0.00 0.00 0.00 3.72
2372 2774 6.909550 ACTTGCCTTCCATATTTTACACAA 57.090 33.333 0.00 0.00 0.00 3.33
2373 2775 7.296628 ACTTGCCTTCCATATTTTACACAAA 57.703 32.000 0.00 0.00 0.00 2.83
2374 2776 7.378181 ACTTGCCTTCCATATTTTACACAAAG 58.622 34.615 0.00 0.00 0.00 2.77
2375 2777 7.232534 ACTTGCCTTCCATATTTTACACAAAGA 59.767 33.333 0.00 0.00 0.00 2.52
2376 2778 7.156876 TGCCTTCCATATTTTACACAAAGAG 57.843 36.000 0.00 0.00 0.00 2.85
2377 2779 6.152661 TGCCTTCCATATTTTACACAAAGAGG 59.847 38.462 0.00 0.00 0.00 3.69
2378 2780 6.564328 CCTTCCATATTTTACACAAAGAGGC 58.436 40.000 0.00 0.00 0.00 4.70
2379 2781 6.405842 CCTTCCATATTTTACACAAAGAGGCC 60.406 42.308 0.00 0.00 0.00 5.19
2380 2782 5.575157 TCCATATTTTACACAAAGAGGCCA 58.425 37.500 5.01 0.00 0.00 5.36
2381 2783 5.417580 TCCATATTTTACACAAAGAGGCCAC 59.582 40.000 5.01 0.00 0.00 5.01
2382 2784 5.418840 CCATATTTTACACAAAGAGGCCACT 59.581 40.000 5.01 0.00 0.00 4.00
2383 2785 4.853924 ATTTTACACAAAGAGGCCACTG 57.146 40.909 5.01 0.00 0.00 3.66
2384 2786 3.290948 TTTACACAAAGAGGCCACTGT 57.709 42.857 5.01 0.00 0.00 3.55
2385 2787 4.425180 TTTACACAAAGAGGCCACTGTA 57.575 40.909 5.01 0.13 0.00 2.74
2386 2788 2.550830 ACACAAAGAGGCCACTGTAG 57.449 50.000 5.01 0.00 0.00 2.74
2387 2789 1.160137 CACAAAGAGGCCACTGTAGC 58.840 55.000 5.01 0.00 0.00 3.58
2388 2790 1.059913 ACAAAGAGGCCACTGTAGCT 58.940 50.000 5.01 0.00 0.00 3.32
2389 2791 1.002544 ACAAAGAGGCCACTGTAGCTC 59.997 52.381 5.01 0.00 0.00 4.09
2390 2792 0.615850 AAAGAGGCCACTGTAGCTCC 59.384 55.000 5.01 0.00 0.00 4.70
2391 2793 1.268283 AAGAGGCCACTGTAGCTCCC 61.268 60.000 5.01 0.00 0.00 4.30
2392 2794 1.687493 GAGGCCACTGTAGCTCCCT 60.687 63.158 5.01 0.00 0.00 4.20
2393 2795 1.965754 GAGGCCACTGTAGCTCCCTG 61.966 65.000 5.01 0.00 0.00 4.45
2394 2796 1.990060 GGCCACTGTAGCTCCCTGA 60.990 63.158 0.00 0.00 0.00 3.86
2395 2797 1.219393 GCCACTGTAGCTCCCTGAC 59.781 63.158 0.00 0.00 0.00 3.51
2396 2798 1.261238 GCCACTGTAGCTCCCTGACT 61.261 60.000 0.00 0.00 0.00 3.41
2397 2799 1.270907 CCACTGTAGCTCCCTGACTT 58.729 55.000 0.00 0.00 0.00 3.01
2398 2800 1.625818 CCACTGTAGCTCCCTGACTTT 59.374 52.381 0.00 0.00 0.00 2.66
2399 2801 2.354203 CCACTGTAGCTCCCTGACTTTC 60.354 54.545 0.00 0.00 0.00 2.62
2400 2802 1.903183 ACTGTAGCTCCCTGACTTTCC 59.097 52.381 0.00 0.00 0.00 3.13
2401 2803 2.183679 CTGTAGCTCCCTGACTTTCCT 58.816 52.381 0.00 0.00 0.00 3.36
2402 2804 2.167487 CTGTAGCTCCCTGACTTTCCTC 59.833 54.545 0.00 0.00 0.00 3.71
2403 2805 2.225394 TGTAGCTCCCTGACTTTCCTCT 60.225 50.000 0.00 0.00 0.00 3.69
2404 2806 2.037385 AGCTCCCTGACTTTCCTCTT 57.963 50.000 0.00 0.00 0.00 2.85
2405 2807 1.627834 AGCTCCCTGACTTTCCTCTTG 59.372 52.381 0.00 0.00 0.00 3.02
2406 2808 1.948144 GCTCCCTGACTTTCCTCTTGC 60.948 57.143 0.00 0.00 0.00 4.01
2407 2809 1.349026 CTCCCTGACTTTCCTCTTGCA 59.651 52.381 0.00 0.00 0.00 4.08
2408 2810 1.988107 TCCCTGACTTTCCTCTTGCAT 59.012 47.619 0.00 0.00 0.00 3.96
2409 2811 2.089980 CCCTGACTTTCCTCTTGCATG 58.910 52.381 0.00 0.00 0.00 4.06
2410 2812 2.553904 CCCTGACTTTCCTCTTGCATGT 60.554 50.000 0.00 0.00 0.00 3.21
2411 2813 2.746362 CCTGACTTTCCTCTTGCATGTC 59.254 50.000 0.00 0.00 0.00 3.06
2412 2814 3.405831 CTGACTTTCCTCTTGCATGTCA 58.594 45.455 0.00 0.00 0.00 3.58
2413 2815 3.405831 TGACTTTCCTCTTGCATGTCAG 58.594 45.455 0.00 0.00 0.00 3.51
2414 2816 3.071457 TGACTTTCCTCTTGCATGTCAGA 59.929 43.478 0.00 0.00 0.00 3.27
2415 2817 3.672808 ACTTTCCTCTTGCATGTCAGAG 58.327 45.455 13.63 13.63 0.00 3.35
2416 2818 2.775911 TTCCTCTTGCATGTCAGAGG 57.224 50.000 25.66 25.66 46.82 3.69
2420 2822 2.836262 CTCTTGCATGTCAGAGGATCC 58.164 52.381 2.48 2.48 33.66 3.36
2421 2823 1.487976 TCTTGCATGTCAGAGGATCCC 59.512 52.381 8.55 0.00 33.66 3.85
2422 2824 1.489649 CTTGCATGTCAGAGGATCCCT 59.510 52.381 8.55 2.14 36.03 4.20
2454 2856 6.484364 TGATGATGGAGCTGTTTGACTATA 57.516 37.500 0.00 0.00 0.00 1.31
2740 3162 3.064545 CAGCAGGCTAAGTCATGTAAAGC 59.935 47.826 0.00 0.00 0.00 3.51
2930 3355 7.561251 TGGACTTTTAGCTGCATATACTGTTA 58.439 34.615 1.02 0.00 0.00 2.41
3091 3517 4.640201 TGACTGCTAATTCTGGTAATTGGC 59.360 41.667 10.70 10.70 42.23 4.52
3132 3559 7.042523 CCTGTTTTTCAGCTATTCAAACTTTGG 60.043 37.037 1.62 6.96 42.38 3.28
3216 3645 1.519455 GGATTCGTGCCCTCAGACG 60.519 63.158 0.00 0.00 36.91 4.18
3238 3667 2.028748 GTGAAAGCCATCAGCCAACAAT 60.029 45.455 0.00 0.00 45.47 2.71
3371 3802 3.758554 AGCGAAACAAATAATGTGGAGCT 59.241 39.130 0.00 0.00 42.99 4.09
3396 3827 9.790389 CTAGTTCGAGTTATCTAATTGTGTCTT 57.210 33.333 0.00 0.00 0.00 3.01
3446 3877 8.819974 CATGGTTTGATAATAAAACAAGGCATC 58.180 33.333 0.00 0.00 40.31 3.91
3451 3882 6.969366 TGATAATAAAACAAGGCATCGGATG 58.031 36.000 13.63 13.63 0.00 3.51
3456 3887 1.453155 ACAAGGCATCGGATGTTCAC 58.547 50.000 18.54 7.69 0.00 3.18
3461 3892 1.024579 GCATCGGATGTTCACCCGTT 61.025 55.000 18.54 0.00 45.48 4.44
3462 3893 1.448985 CATCGGATGTTCACCCGTTT 58.551 50.000 9.85 0.00 45.48 3.60
3482 3914 3.247006 TGGTTCTCTGTATTCGCTTCC 57.753 47.619 0.00 0.00 0.00 3.46
3495 3927 2.103373 TCGCTTCCAATGCTCTAGACT 58.897 47.619 0.00 0.00 0.00 3.24
3516 3948 5.557866 ACTGGTCTAGCGTTTTAATTTCCT 58.442 37.500 0.00 0.00 0.00 3.36
3517 3949 5.411669 ACTGGTCTAGCGTTTTAATTTCCTG 59.588 40.000 0.00 0.00 0.00 3.86
3518 3950 5.553123 TGGTCTAGCGTTTTAATTTCCTGA 58.447 37.500 0.00 0.00 0.00 3.86
3519 3951 5.410439 TGGTCTAGCGTTTTAATTTCCTGAC 59.590 40.000 0.00 0.00 0.00 3.51
3520 3952 5.410439 GGTCTAGCGTTTTAATTTCCTGACA 59.590 40.000 0.00 0.00 0.00 3.58
3547 3979 3.064207 TGACATGTACGAAGGCTGAAAC 58.936 45.455 0.00 0.00 0.00 2.78
3548 3980 2.415512 GACATGTACGAAGGCTGAAACC 59.584 50.000 0.00 0.00 0.00 3.27
3549 3981 2.038557 ACATGTACGAAGGCTGAAACCT 59.961 45.455 0.00 0.00 43.91 3.50
3550 3982 2.163818 TGTACGAAGGCTGAAACCTG 57.836 50.000 0.00 0.00 39.93 4.00
3551 3983 1.689813 TGTACGAAGGCTGAAACCTGA 59.310 47.619 0.00 0.00 39.93 3.86
3553 3985 0.759346 ACGAAGGCTGAAACCTGAGT 59.241 50.000 0.00 0.00 39.93 3.41
3555 3987 1.541233 CGAAGGCTGAAACCTGAGTGT 60.541 52.381 0.00 0.00 39.93 3.55
3556 3988 2.576615 GAAGGCTGAAACCTGAGTGTT 58.423 47.619 0.00 0.00 39.93 3.32
3557 3989 2.736670 AGGCTGAAACCTGAGTGTTT 57.263 45.000 0.00 0.00 39.13 2.83
3558 3990 2.301346 AGGCTGAAACCTGAGTGTTTG 58.699 47.619 4.23 0.00 39.13 2.93
3559 3991 1.269257 GGCTGAAACCTGAGTGTTTGC 60.269 52.381 4.23 3.25 38.51 3.68
3560 3992 1.405105 GCTGAAACCTGAGTGTTTGCA 59.595 47.619 4.23 0.00 38.51 4.08
3561 3993 2.035066 GCTGAAACCTGAGTGTTTGCAT 59.965 45.455 4.23 0.00 38.51 3.96
3562 3994 3.491447 GCTGAAACCTGAGTGTTTGCATT 60.491 43.478 4.23 0.00 38.51 3.56
3563 3995 4.685924 CTGAAACCTGAGTGTTTGCATTT 58.314 39.130 4.23 0.00 38.51 2.32
3564 3996 4.431809 TGAAACCTGAGTGTTTGCATTTG 58.568 39.130 4.23 0.00 38.51 2.32
3565 3997 4.159321 TGAAACCTGAGTGTTTGCATTTGA 59.841 37.500 4.23 0.00 38.51 2.69
3568 4000 4.624015 ACCTGAGTGTTTGCATTTGATTG 58.376 39.130 0.00 0.00 0.00 2.67
3574 4006 8.883954 TGAGTGTTTGCATTTGATTGAAATTA 57.116 26.923 0.00 0.00 31.41 1.40
3575 4007 9.491675 TGAGTGTTTGCATTTGATTGAAATTAT 57.508 25.926 0.00 0.00 31.41 1.28
3576 4008 9.962759 GAGTGTTTGCATTTGATTGAAATTATC 57.037 29.630 0.00 0.00 31.41 1.75
3599 4031 4.177537 TGAAATTCCAGGTCAGGTTTCA 57.822 40.909 0.00 0.00 33.68 2.69
3600 4032 4.541705 TGAAATTCCAGGTCAGGTTTCAA 58.458 39.130 0.00 0.00 33.37 2.69
3619 4051 4.326826 TCAACCTCCTGCTTACTGAATTG 58.673 43.478 0.00 0.00 0.00 2.32
3620 4052 2.716217 ACCTCCTGCTTACTGAATTGC 58.284 47.619 0.00 0.00 0.00 3.56
3631 4063 3.795623 ACTGAATTGCCATCAGATTGC 57.204 42.857 15.03 0.00 45.74 3.56
3635 4067 3.225104 GAATTGCCATCAGATTGCCCTA 58.775 45.455 4.06 0.00 0.00 3.53
3662 4094 4.141711 GGGATACATCAGCTGAAACCTGTA 60.142 45.833 23.33 23.33 39.74 2.74
3663 4095 5.053145 GGATACATCAGCTGAAACCTGTAG 58.947 45.833 24.53 10.79 0.00 2.74
3681 4113 7.054751 ACCTGTAGTCTTATTATTTGCTTCCC 58.945 38.462 0.00 0.00 0.00 3.97
3688 4120 9.314133 AGTCTTATTATTTGCTTCCCTTTTCTT 57.686 29.630 0.00 0.00 0.00 2.52
3692 4124 9.927668 TTATTATTTGCTTCCCTTTTCTTCTTG 57.072 29.630 0.00 0.00 0.00 3.02
3710 4142 7.940850 TCTTCTTGTTGAAAGATAAACCCTTG 58.059 34.615 0.00 0.00 33.79 3.61
3725 4157 3.012934 CCCTTGGGGTGTTATGGTTAG 57.987 52.381 0.00 0.00 38.25 2.34
3730 4162 1.485895 GGGGTGTTATGGTTAGCCGTA 59.514 52.381 0.00 0.00 37.67 4.02
3736 4168 1.504359 TATGGTTAGCCGTAATGCGC 58.496 50.000 0.00 0.00 39.71 6.09
3773 4205 3.915437 TTCCAAGGAATCGAAGCAAAC 57.085 42.857 0.00 0.00 0.00 2.93
3779 4211 2.808543 AGGAATCGAAGCAAACACTGTC 59.191 45.455 0.00 0.00 0.00 3.51
3783 4215 3.878086 TCGAAGCAAACACTGTCATTC 57.122 42.857 0.00 0.00 0.00 2.67
3784 4216 2.548057 TCGAAGCAAACACTGTCATTCC 59.452 45.455 0.00 0.00 0.00 3.01
3792 4224 5.874810 GCAAACACTGTCATTCCTACAGATA 59.125 40.000 10.02 0.00 45.89 1.98
3822 4254 7.605410 TTTAATTCTTCACGATTGGTACTCC 57.395 36.000 0.00 0.00 0.00 3.85
3823 4255 5.422214 AATTCTTCACGATTGGTACTCCT 57.578 39.130 0.00 0.00 34.23 3.69
3824 4256 6.540438 AATTCTTCACGATTGGTACTCCTA 57.460 37.500 0.00 0.00 34.23 2.94
3825 4257 5.988310 TTCTTCACGATTGGTACTCCTAA 57.012 39.130 0.00 0.00 34.23 2.69
3826 4258 5.988310 TCTTCACGATTGGTACTCCTAAA 57.012 39.130 0.00 0.00 34.23 1.85
3833 4294 5.050490 CGATTGGTACTCCTAAACAGATGG 58.950 45.833 0.00 0.00 34.23 3.51
3834 4295 3.906720 TGGTACTCCTAAACAGATGGC 57.093 47.619 0.00 0.00 34.23 4.40
3840 4301 1.009829 CCTAAACAGATGGCGACTGC 58.990 55.000 9.95 0.00 38.74 4.40
3903 4364 5.488341 TCAGGATTGGTACTTCTAAACAGC 58.512 41.667 0.00 0.00 0.00 4.40
3906 4367 4.095036 GGATTGGTACTTCTAAACAGCAGC 59.905 45.833 0.00 0.00 0.00 5.25
3919 4380 2.176792 GCAGCCAAGCTTGCGTAC 59.823 61.111 21.43 9.62 36.40 3.67
3944 4418 4.319177 GACACATTGAACTTAGCTGGAGT 58.681 43.478 0.00 0.00 0.00 3.85
3949 4423 1.270839 TGAACTTAGCTGGAGTGCACC 60.271 52.381 14.63 4.90 34.99 5.01
3950 4424 0.764890 AACTTAGCTGGAGTGCACCA 59.235 50.000 14.63 4.26 38.33 4.17
3951 4425 0.035458 ACTTAGCTGGAGTGCACCAC 59.965 55.000 14.63 7.38 35.91 4.16
3953 4427 1.550524 CTTAGCTGGAGTGCACCACTA 59.449 52.381 14.63 5.36 45.44 2.74
3954 4428 1.186200 TAGCTGGAGTGCACCACTAG 58.814 55.000 14.63 15.85 45.44 2.57
3955 4429 0.542938 AGCTGGAGTGCACCACTAGA 60.543 55.000 22.26 0.13 45.44 2.43
3956 4430 0.108424 GCTGGAGTGCACCACTAGAG 60.108 60.000 22.26 9.44 45.44 2.43
3957 4431 0.108424 CTGGAGTGCACCACTAGAGC 60.108 60.000 14.63 0.00 45.44 4.09
3958 4432 1.153745 GGAGTGCACCACTAGAGCG 60.154 63.158 14.63 0.00 45.44 5.03
3959 4433 1.807573 GAGTGCACCACTAGAGCGC 60.808 63.158 14.63 0.00 45.44 5.92
3960 4434 2.048222 GTGCACCACTAGAGCGCA 60.048 61.111 11.47 0.00 38.56 6.09
3961 4435 2.048222 TGCACCACTAGAGCGCAC 60.048 61.111 11.47 2.25 0.00 5.34
3988 4462 9.956720 AGATGTCAATTAACTTGCATTATTAGC 57.043 29.630 0.00 0.00 34.14 3.09
4076 4551 6.421501 TGAATGTCAAATTGCATGTTTCTGAC 59.578 34.615 0.00 2.71 0.00 3.51
4119 4594 4.844349 AAACTGGGTCTGCATATACACT 57.156 40.909 0.00 0.00 0.00 3.55
4120 4595 4.844349 AACTGGGTCTGCATATACACTT 57.156 40.909 0.00 0.00 0.00 3.16
4121 4596 4.408182 ACTGGGTCTGCATATACACTTC 57.592 45.455 0.00 0.00 0.00 3.01
4122 4597 3.774766 ACTGGGTCTGCATATACACTTCA 59.225 43.478 0.00 0.00 0.00 3.02
4123 4598 4.141846 ACTGGGTCTGCATATACACTTCAG 60.142 45.833 0.00 0.00 0.00 3.02
4128 4605 7.147567 TGGGTCTGCATATACACTTCAGATAAA 60.148 37.037 0.00 0.00 36.37 1.40
4164 4641 6.604795 ACATCCAGGAATTTGAACCTATCTTG 59.395 38.462 0.00 0.00 34.87 3.02
4165 4642 4.949856 TCCAGGAATTTGAACCTATCTTGC 59.050 41.667 0.00 0.00 34.87 4.01
4170 4647 7.330208 CAGGAATTTGAACCTATCTTGCAAAAG 59.670 37.037 0.00 0.00 34.87 2.27
4212 4689 3.262135 TGTCGAAAAGGCGAAATTCAC 57.738 42.857 0.00 0.00 42.55 3.18
4213 4690 2.875933 TGTCGAAAAGGCGAAATTCACT 59.124 40.909 0.00 0.00 42.55 3.41
4222 4699 3.947834 AGGCGAAATTCACTCAAATAGGG 59.052 43.478 0.00 0.00 0.00 3.53
4223 4700 3.489229 GGCGAAATTCACTCAAATAGGGC 60.489 47.826 0.00 0.00 0.00 5.19
4231 4801 2.351726 CACTCAAATAGGGCGTACAAGC 59.648 50.000 0.00 0.00 0.00 4.01
4237 4807 5.353123 TCAAATAGGGCGTACAAGCTTAAAG 59.647 40.000 0.00 0.00 37.29 1.85
4239 4809 2.973945 AGGGCGTACAAGCTTAAAGAG 58.026 47.619 0.00 0.00 37.29 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 1.410083 GGCATAAGGAGTGGATTGCCA 60.410 52.381 6.86 0.00 46.87 4.92
185 198 4.764172 GTGAGACTGAATCACCAATAGCT 58.236 43.478 0.00 0.00 40.99 3.32
216 229 0.586319 TTTCGCTTCAAGCCTGTTCG 59.414 50.000 3.08 0.00 38.18 3.95
324 337 9.712305 AGTATAATCACAAGTTACAGGCATATC 57.288 33.333 0.00 0.00 0.00 1.63
506 525 7.254227 TGTCAGTATGGTTAAACACAAGTTC 57.746 36.000 0.00 0.00 34.55 3.01
533 552 3.565905 ATGAAAGTTTGTAGCAGCAGC 57.434 42.857 0.00 0.00 42.56 5.25
546 570 3.394606 AGGACAACACTGGGTATGAAAGT 59.605 43.478 0.00 0.00 0.00 2.66
555 579 4.065789 GAGAAACTAAGGACAACACTGGG 58.934 47.826 0.00 0.00 0.00 4.45
564 588 4.750598 ACGCTGAAAAGAGAAACTAAGGAC 59.249 41.667 0.00 0.00 0.00 3.85
566 590 6.780706 TTACGCTGAAAAGAGAAACTAAGG 57.219 37.500 0.00 0.00 0.00 2.69
598 622 6.016610 TGCGACAAAAATAGGAGTAAAAAGCT 60.017 34.615 0.00 0.00 0.00 3.74
611 635 8.873215 TTTTACTGGAAATTGCGACAAAAATA 57.127 26.923 0.00 0.00 0.00 1.40
612 636 7.708752 TCTTTTACTGGAAATTGCGACAAAAAT 59.291 29.630 0.00 0.00 0.00 1.82
613 637 7.036220 TCTTTTACTGGAAATTGCGACAAAAA 58.964 30.769 0.00 0.00 0.00 1.94
615 639 6.137794 TCTTTTACTGGAAATTGCGACAAA 57.862 33.333 0.00 0.00 0.00 2.83
618 642 6.089417 CCATTTCTTTTACTGGAAATTGCGAC 59.911 38.462 0.00 0.00 39.29 5.19
620 644 5.925969 ACCATTTCTTTTACTGGAAATTGCG 59.074 36.000 0.00 0.00 39.29 4.85
621 645 6.705825 ACACCATTTCTTTTACTGGAAATTGC 59.294 34.615 0.00 0.00 39.29 3.56
623 647 8.017418 TCACACCATTTCTTTTACTGGAAATT 57.983 30.769 0.00 0.00 39.29 1.82
624 648 7.595819 TCACACCATTTCTTTTACTGGAAAT 57.404 32.000 0.00 0.00 41.15 2.17
625 649 7.505585 AGATCACACCATTTCTTTTACTGGAAA 59.494 33.333 0.00 0.00 36.17 3.13
626 650 7.004086 AGATCACACCATTTCTTTTACTGGAA 58.996 34.615 0.00 0.00 32.92 3.53
628 652 6.127897 GGAGATCACACCATTTCTTTTACTGG 60.128 42.308 0.00 0.00 34.84 4.00
629 653 6.430925 TGGAGATCACACCATTTCTTTTACTG 59.569 38.462 0.00 0.00 32.20 2.74
630 654 6.542821 TGGAGATCACACCATTTCTTTTACT 58.457 36.000 0.00 0.00 32.20 2.24
631 655 6.431234 ACTGGAGATCACACCATTTCTTTTAC 59.569 38.462 0.00 0.00 36.30 2.01
632 656 6.542821 ACTGGAGATCACACCATTTCTTTTA 58.457 36.000 0.00 0.00 36.30 1.52
634 658 4.990526 ACTGGAGATCACACCATTTCTTT 58.009 39.130 0.00 0.00 36.30 2.52
635 659 4.647564 ACTGGAGATCACACCATTTCTT 57.352 40.909 0.00 0.00 36.30 2.52
636 660 5.762179 TTACTGGAGATCACACCATTTCT 57.238 39.130 0.00 0.00 36.30 2.52
644 669 6.374333 GGCAGTAAAAATTACTGGAGATCACA 59.626 38.462 24.07 0.00 43.68 3.58
646 671 6.721318 AGGCAGTAAAAATTACTGGAGATCA 58.279 36.000 24.07 0.00 43.68 2.92
647 672 7.631717 AAGGCAGTAAAAATTACTGGAGATC 57.368 36.000 24.07 11.89 43.68 2.75
650 675 6.148811 TCGAAAGGCAGTAAAAATTACTGGAG 59.851 38.462 24.07 6.94 43.68 3.86
673 698 1.089112 TTGCATTGCAGATGAGGTCG 58.911 50.000 11.76 0.00 40.61 4.79
678 704 4.021229 AGGAATCTTTGCATTGCAGATGA 58.979 39.130 11.76 11.27 40.61 2.92
681 707 3.057104 CACAGGAATCTTTGCATTGCAGA 60.057 43.478 11.76 6.56 40.61 4.26
682 708 3.057104 TCACAGGAATCTTTGCATTGCAG 60.057 43.478 11.76 1.32 40.61 4.41
693 719 3.057315 CGGCACAAATTTCACAGGAATCT 60.057 43.478 0.00 0.00 31.93 2.40
694 720 3.244976 CGGCACAAATTTCACAGGAATC 58.755 45.455 0.00 0.00 31.93 2.52
695 721 2.029110 CCGGCACAAATTTCACAGGAAT 60.029 45.455 0.00 0.00 31.93 3.01
698 724 0.673437 ACCGGCACAAATTTCACAGG 59.327 50.000 0.00 0.00 0.00 4.00
699 725 2.507339 AACCGGCACAAATTTCACAG 57.493 45.000 0.00 0.00 0.00 3.66
700 726 2.482142 GGAAACCGGCACAAATTTCACA 60.482 45.455 0.00 0.00 33.58 3.58
704 762 2.524569 CTGGAAACCGGCACAAATTT 57.475 45.000 0.00 0.00 0.00 1.82
720 778 7.624360 TGATTAGTAACAATAGGTTTGCTGG 57.376 36.000 0.00 0.00 40.96 4.85
724 782 9.010029 AGGTGTTGATTAGTAACAATAGGTTTG 57.990 33.333 0.00 0.00 39.50 2.93
732 790 8.349245 CACATTTCAGGTGTTGATTAGTAACAA 58.651 33.333 0.00 0.00 39.50 2.83
735 793 8.684386 TTCACATTTCAGGTGTTGATTAGTAA 57.316 30.769 0.00 0.00 37.52 2.24
745 806 2.880890 GAGCACTTCACATTTCAGGTGT 59.119 45.455 0.00 0.00 37.52 4.16
762 823 4.383861 CGCCCAGAGCACTGAGCA 62.384 66.667 17.07 0.00 45.92 4.26
767 828 1.188219 TCTTTCTCGCCCAGAGCACT 61.188 55.000 0.00 0.00 46.44 4.40
884 946 1.373570 GGCGAGAGAGATTGTTTGGG 58.626 55.000 0.00 0.00 0.00 4.12
973 1040 2.837591 GGGATTGGTTGGGTTTAATGCT 59.162 45.455 0.00 0.00 0.00 3.79
976 1043 4.037222 GGATGGGATTGGTTGGGTTTAAT 58.963 43.478 0.00 0.00 0.00 1.40
1256 1323 3.518998 CGGCGACCTCCATCTCGT 61.519 66.667 0.00 0.00 32.30 4.18
1440 1510 1.151908 CGAGGAGGAGGGGAGGTAG 59.848 68.421 0.00 0.00 0.00 3.18
1443 1513 0.830023 GAATCGAGGAGGAGGGGAGG 60.830 65.000 0.00 0.00 0.00 4.30
1445 1515 0.105964 CAGAATCGAGGAGGAGGGGA 60.106 60.000 0.00 0.00 0.00 4.81
1446 1516 0.397816 ACAGAATCGAGGAGGAGGGG 60.398 60.000 0.00 0.00 0.00 4.79
1447 1517 1.410882 GAACAGAATCGAGGAGGAGGG 59.589 57.143 0.00 0.00 0.00 4.30
1448 1518 2.103373 TGAACAGAATCGAGGAGGAGG 58.897 52.381 0.00 0.00 0.00 4.30
1449 1519 3.516615 GTTGAACAGAATCGAGGAGGAG 58.483 50.000 0.00 0.00 0.00 3.69
1450 1520 2.233922 GGTTGAACAGAATCGAGGAGGA 59.766 50.000 0.00 0.00 0.00 3.71
1453 1523 3.165875 AGAGGTTGAACAGAATCGAGGA 58.834 45.455 0.00 0.00 0.00 3.71
1479 1549 1.309006 GGAGTCGGGAGGGGTTAGA 59.691 63.158 0.00 0.00 0.00 2.10
1484 1554 3.164269 CCATGGAGTCGGGAGGGG 61.164 72.222 5.56 0.00 0.00 4.79
1950 2343 2.158623 AGGATTCACAGCACAGTTGGAA 60.159 45.455 0.00 0.00 0.00 3.53
1980 2374 0.603172 AGTCAGACAAGCAGCAGCAG 60.603 55.000 3.17 0.00 45.49 4.24
1981 2375 0.602106 GAGTCAGACAAGCAGCAGCA 60.602 55.000 3.17 0.00 45.49 4.41
1982 2376 1.297456 GGAGTCAGACAAGCAGCAGC 61.297 60.000 2.66 0.00 42.56 5.25
1983 2377 0.321021 AGGAGTCAGACAAGCAGCAG 59.679 55.000 2.66 0.00 0.00 4.24
2080 2478 0.972883 AGAAGAGCAGACTGACCACC 59.027 55.000 6.65 0.00 0.00 4.61
2095 2493 1.159285 TCCAAGCATTCGCACAGAAG 58.841 50.000 0.00 0.00 42.92 2.85
2103 2501 5.490139 AATTAGACACATCCAAGCATTCG 57.510 39.130 0.00 0.00 0.00 3.34
2189 2591 5.891551 ACTTCTCTTCCTAAGTCAGAGGATC 59.108 44.000 0.00 0.00 42.75 3.36
2190 2592 5.837829 ACTTCTCTTCCTAAGTCAGAGGAT 58.162 41.667 0.00 0.00 42.75 3.24
2191 2593 5.263872 ACTTCTCTTCCTAAGTCAGAGGA 57.736 43.478 0.00 0.00 41.52 3.71
2198 2600 3.077695 TCCCCTGACTTCTCTTCCTAAGT 59.922 47.826 0.00 0.00 38.62 2.24
2199 2601 3.714144 TCCCCTGACTTCTCTTCCTAAG 58.286 50.000 0.00 0.00 0.00 2.18
2200 2602 3.847042 TCCCCTGACTTCTCTTCCTAA 57.153 47.619 0.00 0.00 0.00 2.69
2201 2603 3.714144 CTTCCCCTGACTTCTCTTCCTA 58.286 50.000 0.00 0.00 0.00 2.94
2202 2604 2.545810 CTTCCCCTGACTTCTCTTCCT 58.454 52.381 0.00 0.00 0.00 3.36
2203 2605 1.065782 GCTTCCCCTGACTTCTCTTCC 60.066 57.143 0.00 0.00 0.00 3.46
2204 2606 1.905894 AGCTTCCCCTGACTTCTCTTC 59.094 52.381 0.00 0.00 0.00 2.87
2205 2607 2.037385 AGCTTCCCCTGACTTCTCTT 57.963 50.000 0.00 0.00 0.00 2.85
2206 2608 2.225394 TGTAGCTTCCCCTGACTTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
2207 2609 2.167487 CTGTAGCTTCCCCTGACTTCTC 59.833 54.545 0.00 0.00 0.00 2.87
2208 2610 2.183679 CTGTAGCTTCCCCTGACTTCT 58.816 52.381 0.00 0.00 0.00 2.85
2209 2611 1.903183 ACTGTAGCTTCCCCTGACTTC 59.097 52.381 0.00 0.00 0.00 3.01
2210 2612 2.031495 ACTGTAGCTTCCCCTGACTT 57.969 50.000 0.00 0.00 0.00 3.01
2211 2613 2.741145 CTACTGTAGCTTCCCCTGACT 58.259 52.381 1.26 0.00 0.00 3.41
2223 2625 4.404073 AGAAGGGAAGTCATGCTACTGTAG 59.596 45.833 10.48 10.48 0.00 2.74
2224 2626 4.353777 AGAAGGGAAGTCATGCTACTGTA 58.646 43.478 0.00 0.00 0.00 2.74
2225 2627 3.177228 AGAAGGGAAGTCATGCTACTGT 58.823 45.455 0.00 0.00 0.00 3.55
2226 2628 3.450457 AGAGAAGGGAAGTCATGCTACTG 59.550 47.826 0.00 0.00 0.00 2.74
2227 2629 3.718723 AGAGAAGGGAAGTCATGCTACT 58.281 45.455 0.00 0.00 0.00 2.57
2228 2630 4.890581 TCTAGAGAAGGGAAGTCATGCTAC 59.109 45.833 0.00 0.00 0.00 3.58
2229 2631 5.130705 TCTAGAGAAGGGAAGTCATGCTA 57.869 43.478 0.00 0.00 0.00 3.49
2230 2632 3.987745 TCTAGAGAAGGGAAGTCATGCT 58.012 45.455 0.00 0.00 0.00 3.79
2231 2633 4.953940 ATCTAGAGAAGGGAAGTCATGC 57.046 45.455 0.00 0.00 0.00 4.06
2232 2634 7.334090 TGAAAATCTAGAGAAGGGAAGTCATG 58.666 38.462 0.00 0.00 0.00 3.07
2233 2635 7.502060 TGAAAATCTAGAGAAGGGAAGTCAT 57.498 36.000 0.00 0.00 0.00 3.06
2234 2636 6.935240 TGAAAATCTAGAGAAGGGAAGTCA 57.065 37.500 0.00 0.00 0.00 3.41
2235 2637 9.541143 CTTATGAAAATCTAGAGAAGGGAAGTC 57.459 37.037 0.00 0.00 0.00 3.01
2236 2638 7.990314 GCTTATGAAAATCTAGAGAAGGGAAGT 59.010 37.037 0.00 0.00 0.00 3.01
2237 2639 8.210265 AGCTTATGAAAATCTAGAGAAGGGAAG 58.790 37.037 0.00 0.00 0.00 3.46
2238 2640 7.989741 CAGCTTATGAAAATCTAGAGAAGGGAA 59.010 37.037 0.00 0.00 0.00 3.97
2239 2641 7.504403 CAGCTTATGAAAATCTAGAGAAGGGA 58.496 38.462 0.00 0.00 0.00 4.20
2240 2642 6.204495 GCAGCTTATGAAAATCTAGAGAAGGG 59.796 42.308 0.00 0.00 0.00 3.95
2241 2643 6.765036 TGCAGCTTATGAAAATCTAGAGAAGG 59.235 38.462 0.00 0.00 0.00 3.46
2242 2644 7.783090 TGCAGCTTATGAAAATCTAGAGAAG 57.217 36.000 0.00 0.00 0.00 2.85
2243 2645 8.743085 ATTGCAGCTTATGAAAATCTAGAGAA 57.257 30.769 0.00 0.00 27.18 2.87
2244 2646 8.743085 AATTGCAGCTTATGAAAATCTAGAGA 57.257 30.769 0.00 0.00 27.18 3.10
2249 2651 9.143631 GTGTTAAATTGCAGCTTATGAAAATCT 57.856 29.630 0.00 0.00 27.18 2.40
2250 2652 8.924691 TGTGTTAAATTGCAGCTTATGAAAATC 58.075 29.630 0.00 0.00 27.18 2.17
2251 2653 8.830201 TGTGTTAAATTGCAGCTTATGAAAAT 57.170 26.923 0.00 0.00 27.18 1.82
2252 2654 8.547069 GTTGTGTTAAATTGCAGCTTATGAAAA 58.453 29.630 0.00 0.00 27.18 2.29
2253 2655 7.096271 CGTTGTGTTAAATTGCAGCTTATGAAA 60.096 33.333 0.00 0.00 0.00 2.69
2254 2656 6.362016 CGTTGTGTTAAATTGCAGCTTATGAA 59.638 34.615 0.00 0.00 0.00 2.57
2255 2657 5.855925 CGTTGTGTTAAATTGCAGCTTATGA 59.144 36.000 0.00 0.00 0.00 2.15
2256 2658 5.855925 TCGTTGTGTTAAATTGCAGCTTATG 59.144 36.000 0.00 0.00 0.00 1.90
2257 2659 6.007936 TCGTTGTGTTAAATTGCAGCTTAT 57.992 33.333 0.00 0.00 0.00 1.73
2258 2660 5.425577 TCGTTGTGTTAAATTGCAGCTTA 57.574 34.783 0.00 0.00 0.00 3.09
2259 2661 4.300189 TCGTTGTGTTAAATTGCAGCTT 57.700 36.364 0.00 0.00 0.00 3.74
2260 2662 3.980646 TCGTTGTGTTAAATTGCAGCT 57.019 38.095 0.00 0.00 0.00 4.24
2261 2663 6.307800 ACATAATCGTTGTGTTAAATTGCAGC 59.692 34.615 0.00 0.00 30.27 5.25
2262 2664 7.795431 ACATAATCGTTGTGTTAAATTGCAG 57.205 32.000 0.00 0.00 30.27 4.41
2263 2665 8.290325 TGTACATAATCGTTGTGTTAAATTGCA 58.710 29.630 0.00 0.00 36.38 4.08
2264 2666 8.662369 TGTACATAATCGTTGTGTTAAATTGC 57.338 30.769 0.00 0.00 36.38 3.56
2265 2667 9.820229 ACTGTACATAATCGTTGTGTTAAATTG 57.180 29.630 0.00 0.00 36.38 2.32
2266 2668 9.820229 CACTGTACATAATCGTTGTGTTAAATT 57.180 29.630 0.00 0.00 36.38 1.82
2267 2669 9.210329 TCACTGTACATAATCGTTGTGTTAAAT 57.790 29.630 0.00 0.00 36.38 1.40
2268 2670 8.590719 TCACTGTACATAATCGTTGTGTTAAA 57.409 30.769 0.00 0.00 36.38 1.52
2269 2671 8.766000 ATCACTGTACATAATCGTTGTGTTAA 57.234 30.769 0.00 0.00 36.38 2.01
2270 2672 8.652463 CAATCACTGTACATAATCGTTGTGTTA 58.348 33.333 0.00 0.00 36.38 2.41
2271 2673 7.172532 ACAATCACTGTACATAATCGTTGTGTT 59.827 33.333 0.00 0.00 36.10 3.32
2272 2674 6.649141 ACAATCACTGTACATAATCGTTGTGT 59.351 34.615 0.00 5.71 36.10 3.72
2273 2675 7.060600 ACAATCACTGTACATAATCGTTGTG 57.939 36.000 0.00 0.00 36.10 3.33
2274 2676 6.312918 GGACAATCACTGTACATAATCGTTGT 59.687 38.462 0.00 3.82 38.94 3.32
2275 2677 6.312672 TGGACAATCACTGTACATAATCGTTG 59.687 38.462 0.00 0.60 44.47 4.10
2276 2678 6.403049 TGGACAATCACTGTACATAATCGTT 58.597 36.000 0.00 0.00 44.47 3.85
2277 2679 5.972935 TGGACAATCACTGTACATAATCGT 58.027 37.500 0.00 0.00 44.47 3.73
2284 2686 8.004611 CAGATTACTGTGGACAATCACTGTACA 61.005 40.741 12.09 0.00 45.21 2.90
2285 2687 6.311445 CAGATTACTGTGGACAATCACTGTAC 59.689 42.308 12.09 0.00 45.21 2.90
2286 2688 6.398095 CAGATTACTGTGGACAATCACTGTA 58.602 40.000 9.53 9.53 44.24 2.74
2287 2689 5.240891 CAGATTACTGTGGACAATCACTGT 58.759 41.667 11.13 11.13 46.46 3.55
2288 2690 5.791367 CAGATTACTGTGGACAATCACTG 57.209 43.478 4.40 0.00 40.76 3.66
2309 2711 3.369787 CCAGGAATCACTGTAGATGCACA 60.370 47.826 0.00 0.00 36.75 4.57
2310 2712 3.201290 CCAGGAATCACTGTAGATGCAC 58.799 50.000 0.00 0.00 36.75 4.57
2311 2713 2.171237 CCCAGGAATCACTGTAGATGCA 59.829 50.000 0.00 0.00 36.75 3.96
2312 2714 2.843701 CCCAGGAATCACTGTAGATGC 58.156 52.381 0.00 0.00 36.75 3.91
2313 2715 2.171237 TGCCCAGGAATCACTGTAGATG 59.829 50.000 0.00 0.00 36.75 2.90
2314 2716 2.437281 CTGCCCAGGAATCACTGTAGAT 59.563 50.000 0.00 0.00 36.75 1.98
2315 2717 1.833630 CTGCCCAGGAATCACTGTAGA 59.166 52.381 0.00 0.00 36.75 2.59
2316 2718 1.556911 ACTGCCCAGGAATCACTGTAG 59.443 52.381 0.00 0.00 36.75 2.74
2317 2719 1.278985 CACTGCCCAGGAATCACTGTA 59.721 52.381 0.00 0.00 36.75 2.74
2318 2720 0.037303 CACTGCCCAGGAATCACTGT 59.963 55.000 0.00 0.00 36.75 3.55
2319 2721 0.037303 ACACTGCCCAGGAATCACTG 59.963 55.000 0.00 0.00 38.21 3.66
2320 2722 0.326264 GACACTGCCCAGGAATCACT 59.674 55.000 0.00 0.00 0.00 3.41
2321 2723 1.021390 CGACACTGCCCAGGAATCAC 61.021 60.000 0.00 0.00 0.00 3.06
2322 2724 1.296392 CGACACTGCCCAGGAATCA 59.704 57.895 0.00 0.00 0.00 2.57
2323 2725 1.450312 CCGACACTGCCCAGGAATC 60.450 63.158 0.00 0.00 0.00 2.52
2324 2726 1.274703 ATCCGACACTGCCCAGGAAT 61.275 55.000 0.00 0.00 34.35 3.01
2325 2727 1.899437 GATCCGACACTGCCCAGGAA 61.899 60.000 0.00 0.00 34.35 3.36
2326 2728 2.284625 ATCCGACACTGCCCAGGA 60.285 61.111 0.00 0.00 35.24 3.86
2327 2729 2.187946 GATCCGACACTGCCCAGG 59.812 66.667 0.00 0.00 0.00 4.45
2328 2730 1.142748 GAGATCCGACACTGCCCAG 59.857 63.158 0.00 0.00 0.00 4.45
2329 2731 0.033503 TAGAGATCCGACACTGCCCA 60.034 55.000 0.00 0.00 0.00 5.36
2330 2732 1.112113 TTAGAGATCCGACACTGCCC 58.888 55.000 0.00 0.00 0.00 5.36
2331 2733 1.751924 AGTTAGAGATCCGACACTGCC 59.248 52.381 0.00 0.00 0.00 4.85
2332 2734 3.182967 CAAGTTAGAGATCCGACACTGC 58.817 50.000 0.00 0.00 0.00 4.40
2333 2735 3.182967 GCAAGTTAGAGATCCGACACTG 58.817 50.000 0.00 0.00 0.00 3.66
2334 2736 2.166664 GGCAAGTTAGAGATCCGACACT 59.833 50.000 0.00 0.00 0.00 3.55
2335 2737 2.166664 AGGCAAGTTAGAGATCCGACAC 59.833 50.000 0.00 0.00 0.00 3.67
2336 2738 2.457598 AGGCAAGTTAGAGATCCGACA 58.542 47.619 0.00 0.00 0.00 4.35
2337 2739 3.449632 GAAGGCAAGTTAGAGATCCGAC 58.550 50.000 0.00 0.00 0.00 4.79
2338 2740 2.431057 GGAAGGCAAGTTAGAGATCCGA 59.569 50.000 0.00 0.00 0.00 4.55
2339 2741 2.168521 TGGAAGGCAAGTTAGAGATCCG 59.831 50.000 0.00 0.00 0.00 4.18
2340 2742 3.914426 TGGAAGGCAAGTTAGAGATCC 57.086 47.619 0.00 0.00 0.00 3.36
2341 2743 8.457238 AAAATATGGAAGGCAAGTTAGAGATC 57.543 34.615 0.00 0.00 0.00 2.75
2342 2744 9.343539 GTAAAATATGGAAGGCAAGTTAGAGAT 57.656 33.333 0.00 0.00 0.00 2.75
2343 2745 8.325787 TGTAAAATATGGAAGGCAAGTTAGAGA 58.674 33.333 0.00 0.00 0.00 3.10
2344 2746 8.398665 GTGTAAAATATGGAAGGCAAGTTAGAG 58.601 37.037 0.00 0.00 0.00 2.43
2345 2747 7.885922 TGTGTAAAATATGGAAGGCAAGTTAGA 59.114 33.333 0.00 0.00 0.00 2.10
2346 2748 8.050778 TGTGTAAAATATGGAAGGCAAGTTAG 57.949 34.615 0.00 0.00 0.00 2.34
2347 2749 8.410673 TTGTGTAAAATATGGAAGGCAAGTTA 57.589 30.769 0.00 0.00 0.00 2.24
2348 2750 6.909550 TGTGTAAAATATGGAAGGCAAGTT 57.090 33.333 0.00 0.00 0.00 2.66
2349 2751 6.909550 TTGTGTAAAATATGGAAGGCAAGT 57.090 33.333 0.00 0.00 0.00 3.16
2350 2752 7.601856 TCTTTGTGTAAAATATGGAAGGCAAG 58.398 34.615 0.00 0.00 0.00 4.01
2351 2753 7.309744 CCTCTTTGTGTAAAATATGGAAGGCAA 60.310 37.037 0.00 0.00 0.00 4.52
2352 2754 6.152661 CCTCTTTGTGTAAAATATGGAAGGCA 59.847 38.462 0.00 0.00 0.00 4.75
2353 2755 6.564328 CCTCTTTGTGTAAAATATGGAAGGC 58.436 40.000 0.00 0.00 0.00 4.35
2354 2756 6.405842 GGCCTCTTTGTGTAAAATATGGAAGG 60.406 42.308 0.00 0.00 0.00 3.46
2355 2757 6.152661 TGGCCTCTTTGTGTAAAATATGGAAG 59.847 38.462 3.32 0.00 0.00 3.46
2356 2758 6.013379 TGGCCTCTTTGTGTAAAATATGGAA 58.987 36.000 3.32 0.00 0.00 3.53
2357 2759 5.417580 GTGGCCTCTTTGTGTAAAATATGGA 59.582 40.000 3.32 0.00 0.00 3.41
2358 2760 5.418840 AGTGGCCTCTTTGTGTAAAATATGG 59.581 40.000 3.32 0.00 0.00 2.74
2359 2761 6.071952 ACAGTGGCCTCTTTGTGTAAAATATG 60.072 38.462 4.10 0.00 0.00 1.78
2360 2762 6.010219 ACAGTGGCCTCTTTGTGTAAAATAT 58.990 36.000 4.10 0.00 0.00 1.28
2361 2763 5.381757 ACAGTGGCCTCTTTGTGTAAAATA 58.618 37.500 4.10 0.00 0.00 1.40
2362 2764 4.215109 ACAGTGGCCTCTTTGTGTAAAAT 58.785 39.130 4.10 0.00 0.00 1.82
2363 2765 3.626930 ACAGTGGCCTCTTTGTGTAAAA 58.373 40.909 4.10 0.00 0.00 1.52
2364 2766 3.290948 ACAGTGGCCTCTTTGTGTAAA 57.709 42.857 4.10 0.00 0.00 2.01
2365 2767 3.805807 GCTACAGTGGCCTCTTTGTGTAA 60.806 47.826 4.10 0.00 0.00 2.41
2366 2768 2.289444 GCTACAGTGGCCTCTTTGTGTA 60.289 50.000 4.10 4.66 0.00 2.90
2367 2769 1.543429 GCTACAGTGGCCTCTTTGTGT 60.543 52.381 4.10 3.64 0.00 3.72
2368 2770 1.160137 GCTACAGTGGCCTCTTTGTG 58.840 55.000 4.10 0.00 0.00 3.33
2369 2771 1.002544 GAGCTACAGTGGCCTCTTTGT 59.997 52.381 4.10 4.77 0.00 2.83
2370 2772 1.677217 GGAGCTACAGTGGCCTCTTTG 60.677 57.143 4.10 0.00 0.00 2.77
2371 2773 0.615850 GGAGCTACAGTGGCCTCTTT 59.384 55.000 4.10 0.99 0.00 2.52
2372 2774 1.268283 GGGAGCTACAGTGGCCTCTT 61.268 60.000 4.10 0.00 0.00 2.85
2373 2775 1.687493 GGGAGCTACAGTGGCCTCT 60.687 63.158 3.32 1.65 0.00 3.69
2374 2776 1.687493 AGGGAGCTACAGTGGCCTC 60.687 63.158 3.32 0.00 0.00 4.70
2375 2777 1.992277 CAGGGAGCTACAGTGGCCT 60.992 63.158 3.32 0.00 0.00 5.19
2376 2778 1.990060 TCAGGGAGCTACAGTGGCC 60.990 63.158 5.06 0.00 0.00 5.36
2377 2779 1.219393 GTCAGGGAGCTACAGTGGC 59.781 63.158 0.00 0.00 0.00 5.01
2378 2780 1.270907 AAGTCAGGGAGCTACAGTGG 58.729 55.000 0.00 0.00 0.00 4.00
2379 2781 2.354203 GGAAAGTCAGGGAGCTACAGTG 60.354 54.545 0.00 0.00 0.00 3.66
2380 2782 1.903183 GGAAAGTCAGGGAGCTACAGT 59.097 52.381 0.00 0.00 0.00 3.55
2381 2783 2.167487 GAGGAAAGTCAGGGAGCTACAG 59.833 54.545 0.00 0.00 0.00 2.74
2382 2784 2.180276 GAGGAAAGTCAGGGAGCTACA 58.820 52.381 0.00 0.00 0.00 2.74
2383 2785 2.462723 AGAGGAAAGTCAGGGAGCTAC 58.537 52.381 0.00 0.00 0.00 3.58
2384 2786 2.834549 CAAGAGGAAAGTCAGGGAGCTA 59.165 50.000 0.00 0.00 0.00 3.32
2385 2787 1.627834 CAAGAGGAAAGTCAGGGAGCT 59.372 52.381 0.00 0.00 0.00 4.09
2386 2788 1.948144 GCAAGAGGAAAGTCAGGGAGC 60.948 57.143 0.00 0.00 0.00 4.70
2387 2789 1.349026 TGCAAGAGGAAAGTCAGGGAG 59.651 52.381 0.00 0.00 0.00 4.30
2388 2790 1.434188 TGCAAGAGGAAAGTCAGGGA 58.566 50.000 0.00 0.00 0.00 4.20
2389 2791 2.089980 CATGCAAGAGGAAAGTCAGGG 58.910 52.381 0.00 0.00 0.00 4.45
2390 2792 2.746362 GACATGCAAGAGGAAAGTCAGG 59.254 50.000 0.00 0.00 0.00 3.86
2391 2793 3.405831 TGACATGCAAGAGGAAAGTCAG 58.594 45.455 0.00 0.00 32.29 3.51
2392 2794 3.071457 TCTGACATGCAAGAGGAAAGTCA 59.929 43.478 0.00 0.00 34.66 3.41
2393 2795 3.668447 TCTGACATGCAAGAGGAAAGTC 58.332 45.455 0.00 0.00 0.00 3.01
2394 2796 3.672808 CTCTGACATGCAAGAGGAAAGT 58.327 45.455 14.67 0.00 0.00 2.66
2399 2801 2.485124 GGATCCTCTGACATGCAAGAGG 60.485 54.545 27.43 27.43 46.82 3.69
2400 2802 2.485124 GGGATCCTCTGACATGCAAGAG 60.485 54.545 12.58 15.28 0.00 2.85
2401 2803 1.487976 GGGATCCTCTGACATGCAAGA 59.512 52.381 12.58 0.00 0.00 3.02
2402 2804 1.489649 AGGGATCCTCTGACATGCAAG 59.510 52.381 12.58 0.00 0.00 4.01
2403 2805 1.487976 GAGGGATCCTCTGACATGCAA 59.512 52.381 12.58 0.00 46.41 4.08
2404 2806 1.126488 GAGGGATCCTCTGACATGCA 58.874 55.000 12.58 0.00 46.41 3.96
2414 2816 2.668850 TCAAAAGGGAGAGGGATCCT 57.331 50.000 12.58 0.00 39.50 3.24
2415 2817 2.780010 TCATCAAAAGGGAGAGGGATCC 59.220 50.000 1.92 1.92 38.76 3.36
2416 2818 4.396522 CATCATCAAAAGGGAGAGGGATC 58.603 47.826 0.00 0.00 0.00 3.36
2417 2819 3.139770 CCATCATCAAAAGGGAGAGGGAT 59.860 47.826 0.00 0.00 32.24 3.85
2418 2820 2.511218 CCATCATCAAAAGGGAGAGGGA 59.489 50.000 0.00 0.00 32.24 4.20
2419 2821 2.511218 TCCATCATCAAAAGGGAGAGGG 59.489 50.000 0.00 0.00 0.00 4.30
2420 2822 3.818180 CTCCATCATCAAAAGGGAGAGG 58.182 50.000 0.00 0.00 46.38 3.69
2421 2823 3.117963 AGCTCCATCATCAAAAGGGAGAG 60.118 47.826 10.02 0.00 46.38 3.20
2422 2824 2.848694 AGCTCCATCATCAAAAGGGAGA 59.151 45.455 10.02 0.00 46.38 3.71
2423 2825 2.950309 CAGCTCCATCATCAAAAGGGAG 59.050 50.000 0.00 0.00 46.24 4.30
2424 2826 2.309755 ACAGCTCCATCATCAAAAGGGA 59.690 45.455 0.00 0.00 0.00 4.20
2425 2827 2.731572 ACAGCTCCATCATCAAAAGGG 58.268 47.619 0.00 0.00 0.00 3.95
2454 2856 1.623811 ACCTTCGCACAGACAACCTAT 59.376 47.619 0.00 0.00 0.00 2.57
2597 2999 4.168922 TCAGCAATTGCAACAGAATGAG 57.831 40.909 30.89 8.28 45.16 2.90
2884 3307 6.017605 GTCCAGACTGCATCATACTTAATTGG 60.018 42.308 0.00 0.00 0.00 3.16
3091 3517 0.912486 ACAGGGGAAAGGGAGAATCG 59.088 55.000 0.00 0.00 34.37 3.34
3132 3559 9.328721 GCCATAAAATTAAAACAATGAGCAAAC 57.671 29.630 0.00 0.00 0.00 2.93
3216 3645 0.244721 GTTGGCTGATGGCTTTCACC 59.755 55.000 0.00 0.00 41.46 4.02
3270 3699 1.413118 TCTGAAGGGCATCAGCGATA 58.587 50.000 13.04 0.00 45.21 2.92
3273 3702 2.074576 CATATCTGAAGGGCATCAGCG 58.925 52.381 13.04 1.09 45.21 5.18
3371 3802 9.569167 CAAGACACAATTAGATAACTCGAACTA 57.431 33.333 0.00 0.00 0.00 2.24
3456 3887 2.671396 CGAATACAGAGAACCAAACGGG 59.329 50.000 0.00 0.00 44.81 5.28
3461 3892 3.007506 TGGAAGCGAATACAGAGAACCAA 59.992 43.478 0.00 0.00 0.00 3.67
3462 3893 2.565391 TGGAAGCGAATACAGAGAACCA 59.435 45.455 0.00 0.00 0.00 3.67
3495 3927 5.410439 GTCAGGAAATTAAAACGCTAGACCA 59.590 40.000 0.00 0.00 0.00 4.02
3503 3935 7.271223 GTCATGTCATGTCAGGAAATTAAAACG 59.729 37.037 12.54 0.00 30.15 3.60
3520 3952 3.118629 AGCCTTCGTACATGTCATGTCAT 60.119 43.478 21.65 0.00 43.67 3.06
3547 3979 4.873817 TCAATCAAATGCAAACACTCAGG 58.126 39.130 0.00 0.00 0.00 3.86
3548 3980 6.831727 TTTCAATCAAATGCAAACACTCAG 57.168 33.333 0.00 0.00 0.00 3.35
3549 3981 7.789273 AATTTCAATCAAATGCAAACACTCA 57.211 28.000 0.00 0.00 34.69 3.41
3550 3982 9.962759 GATAATTTCAATCAAATGCAAACACTC 57.037 29.630 0.00 0.00 34.69 3.51
3551 3983 9.715121 AGATAATTTCAATCAAATGCAAACACT 57.285 25.926 0.00 0.00 34.69 3.55
3568 4000 8.193438 CCTGACCTGGAATTTCAAGATAATTTC 58.807 37.037 0.00 0.00 0.00 2.17
3574 4006 4.664688 ACCTGACCTGGAATTTCAAGAT 57.335 40.909 0.00 0.00 0.00 2.40
3575 4007 4.453480 AACCTGACCTGGAATTTCAAGA 57.547 40.909 0.00 0.00 0.00 3.02
3576 4008 4.584325 TGAAACCTGACCTGGAATTTCAAG 59.416 41.667 0.00 0.00 32.65 3.02
3599 4031 3.084786 GCAATTCAGTAAGCAGGAGGTT 58.915 45.455 0.00 0.00 39.18 3.50
3600 4032 2.619074 GGCAATTCAGTAAGCAGGAGGT 60.619 50.000 0.00 0.00 0.00 3.85
3619 4051 3.350833 CCTATTAGGGCAATCTGATGGC 58.649 50.000 8.56 8.56 44.56 4.40
3635 4067 5.370880 AGGTTTCAGCTGATGTATCCCTATT 59.629 40.000 19.04 0.00 0.00 1.73
3641 4073 5.665459 ACTACAGGTTTCAGCTGATGTATC 58.335 41.667 22.04 10.97 45.98 2.24
3651 4083 9.167311 AGCAAATAATAAGACTACAGGTTTCAG 57.833 33.333 0.00 0.00 0.00 3.02
3652 4084 9.515226 AAGCAAATAATAAGACTACAGGTTTCA 57.485 29.630 0.00 0.00 0.00 2.69
3662 4094 8.885693 AGAAAAGGGAAGCAAATAATAAGACT 57.114 30.769 0.00 0.00 0.00 3.24
3663 4095 9.574458 GAAGAAAAGGGAAGCAAATAATAAGAC 57.426 33.333 0.00 0.00 0.00 3.01
3681 4113 9.249457 GGGTTTATCTTTCAACAAGAAGAAAAG 57.751 33.333 0.00 0.00 37.57 2.27
3688 4120 5.538433 CCCAAGGGTTTATCTTTCAACAAGA 59.462 40.000 0.00 0.00 0.00 3.02
3691 4123 4.156477 CCCCAAGGGTTTATCTTTCAACA 58.844 43.478 4.11 0.00 38.25 3.33
3692 4124 4.801330 CCCCAAGGGTTTATCTTTCAAC 57.199 45.455 4.11 0.00 38.25 3.18
3710 4142 0.253894 ACGGCTAACCATAACACCCC 59.746 55.000 0.00 0.00 34.57 4.95
3719 4151 2.168503 CGCGCATTACGGCTAACCA 61.169 57.895 8.75 0.00 43.93 3.67
3720 4152 2.624264 CGCGCATTACGGCTAACC 59.376 61.111 8.75 0.00 43.93 2.85
3730 4162 2.510238 GCTCTCACTCCGCGCATT 60.510 61.111 8.75 0.00 0.00 3.56
3736 4168 1.734465 GGAAACATTGCTCTCACTCCG 59.266 52.381 0.00 0.00 0.00 4.63
3803 4235 5.988310 TTAGGAGTACCAATCGTGAAGAA 57.012 39.130 0.00 0.00 38.94 2.52
3804 4236 5.244402 TGTTTAGGAGTACCAATCGTGAAGA 59.756 40.000 0.00 0.00 38.94 2.87
3808 4240 5.068234 TCTGTTTAGGAGTACCAATCGTG 57.932 43.478 0.00 0.00 38.94 4.35
3809 4241 5.395324 CCATCTGTTTAGGAGTACCAATCGT 60.395 44.000 0.00 0.00 38.94 3.73
3811 4243 4.816925 GCCATCTGTTTAGGAGTACCAATC 59.183 45.833 0.00 0.00 38.94 2.67
3812 4244 4.683400 CGCCATCTGTTTAGGAGTACCAAT 60.683 45.833 0.00 0.00 38.94 3.16
3814 4246 2.167693 CGCCATCTGTTTAGGAGTACCA 59.832 50.000 0.00 0.00 38.94 3.25
3815 4247 2.429610 TCGCCATCTGTTTAGGAGTACC 59.570 50.000 0.00 0.00 0.00 3.34
3817 4249 3.130516 CAGTCGCCATCTGTTTAGGAGTA 59.869 47.826 0.00 0.00 0.00 2.59
3818 4250 2.093973 CAGTCGCCATCTGTTTAGGAGT 60.094 50.000 0.00 0.00 0.00 3.85
3820 4252 1.405526 GCAGTCGCCATCTGTTTAGGA 60.406 52.381 0.00 0.00 35.60 2.94
3821 4253 1.009829 GCAGTCGCCATCTGTTTAGG 58.990 55.000 0.00 0.00 35.60 2.69
3822 4254 1.725641 TGCAGTCGCCATCTGTTTAG 58.274 50.000 0.00 0.00 37.32 1.85
3823 4255 1.804151 GTTGCAGTCGCCATCTGTTTA 59.196 47.619 0.00 0.00 37.32 2.01
3824 4256 0.593128 GTTGCAGTCGCCATCTGTTT 59.407 50.000 0.00 0.00 37.32 2.83
3825 4257 1.568612 CGTTGCAGTCGCCATCTGTT 61.569 55.000 0.86 0.00 37.32 3.16
3826 4258 2.029288 CGTTGCAGTCGCCATCTGT 61.029 57.895 0.86 0.00 37.32 3.41
3833 4294 4.702826 GTCGCACGTTGCAGTCGC 62.703 66.667 12.09 1.98 45.36 5.19
3834 4295 1.272784 TTAGTCGCACGTTGCAGTCG 61.273 55.000 10.90 10.90 45.36 4.18
3840 4301 1.649171 CTGCTAGTTAGTCGCACGTTG 59.351 52.381 0.00 0.00 0.00 4.10
3851 4312 7.094631 CCATTGTGTGTTACTACTGCTAGTTA 58.905 38.462 0.00 0.00 34.79 2.24
3903 4364 1.499056 CAGTACGCAAGCTTGGCTG 59.501 57.895 27.10 15.39 39.62 4.85
3906 4367 0.602638 TGTCCAGTACGCAAGCTTGG 60.603 55.000 27.10 18.79 45.62 3.61
3919 4380 3.438087 CCAGCTAAGTTCAATGTGTCCAG 59.562 47.826 0.00 0.00 0.00 3.86
3944 4418 2.048222 GTGCGCTCTAGTGGTGCA 60.048 61.111 9.73 17.61 45.96 4.57
3949 4423 1.135286 TGACATCTGTGCGCTCTAGTG 60.135 52.381 9.73 7.88 0.00 2.74
3950 4424 1.177401 TGACATCTGTGCGCTCTAGT 58.823 50.000 9.73 2.66 0.00 2.57
3951 4425 2.284263 TTGACATCTGTGCGCTCTAG 57.716 50.000 9.73 4.24 0.00 2.43
3952 4426 2.967599 ATTGACATCTGTGCGCTCTA 57.032 45.000 9.73 0.00 0.00 2.43
3953 4427 2.105006 AATTGACATCTGTGCGCTCT 57.895 45.000 9.73 0.00 0.00 4.09
3954 4428 3.372206 AGTTAATTGACATCTGTGCGCTC 59.628 43.478 9.73 5.51 0.00 5.03
3955 4429 3.338249 AGTTAATTGACATCTGTGCGCT 58.662 40.909 9.73 0.00 0.00 5.92
3956 4430 3.747099 AGTTAATTGACATCTGTGCGC 57.253 42.857 0.00 0.00 0.00 6.09
3957 4431 3.848019 GCAAGTTAATTGACATCTGTGCG 59.152 43.478 2.93 0.00 41.83 5.34
3958 4432 4.797471 TGCAAGTTAATTGACATCTGTGC 58.203 39.130 2.93 4.98 41.83 4.57
3959 4433 9.577110 AATAATGCAAGTTAATTGACATCTGTG 57.423 29.630 2.93 0.00 41.83 3.66
4062 4537 1.795872 CGTACCGTCAGAAACATGCAA 59.204 47.619 0.00 0.00 0.00 4.08
4068 4543 5.787062 GCTAAATTTTCGTACCGTCAGAAAC 59.213 40.000 0.00 0.00 34.14 2.78
4076 4551 4.932268 TTCAGGCTAAATTTTCGTACCG 57.068 40.909 0.00 0.00 0.00 4.02
4082 4557 6.288294 ACCCAGTTTTTCAGGCTAAATTTTC 58.712 36.000 0.00 0.00 0.00 2.29
4088 4563 3.486383 CAGACCCAGTTTTTCAGGCTAA 58.514 45.455 0.00 0.00 0.00 3.09
4119 4594 7.047891 GGATGTACCATGTGACTTTATCTGAA 58.952 38.462 0.00 0.00 38.79 3.02
4120 4595 6.156083 TGGATGTACCATGTGACTTTATCTGA 59.844 38.462 0.00 0.00 44.64 3.27
4121 4596 6.348498 TGGATGTACCATGTGACTTTATCTG 58.652 40.000 0.00 0.00 44.64 2.90
4122 4597 6.560003 TGGATGTACCATGTGACTTTATCT 57.440 37.500 0.00 0.00 44.64 1.98
4191 4668 3.502211 AGTGAATTTCGCCTTTTCGACAT 59.498 39.130 6.34 0.00 38.30 3.06
4196 4673 6.528072 CCTATTTGAGTGAATTTCGCCTTTTC 59.472 38.462 6.34 0.00 0.00 2.29
4212 4689 2.906354 AGCTTGTACGCCCTATTTGAG 58.094 47.619 0.00 0.00 0.00 3.02
4213 4690 3.343941 AAGCTTGTACGCCCTATTTGA 57.656 42.857 0.00 0.00 0.00 2.69
4222 4699 5.577164 TGAGATTCTCTTTAAGCTTGTACGC 59.423 40.000 9.86 0.00 0.00 4.42
4223 4700 7.582435 TTGAGATTCTCTTTAAGCTTGTACG 57.418 36.000 9.86 0.00 0.00 3.67
4237 4807 7.223777 GGCAACTACTCTGTATTTGAGATTCTC 59.776 40.741 6.73 6.73 35.66 2.87
4239 4809 6.258947 GGGCAACTACTCTGTATTTGAGATTC 59.741 42.308 10.56 0.00 35.66 2.52
4252 4822 2.586368 AGGGTACTAGGGCAACTACTCT 59.414 50.000 0.00 0.00 0.00 3.24
4258 4828 4.765813 TCATTAAGGGTACTAGGGCAAC 57.234 45.455 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.