Multiple sequence alignment - TraesCS6A01G279300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G279300 chr6A 100.000 8139 0 0 477 8615 507081912 507090050 0.000000e+00 15031.0
1 TraesCS6A01G279300 chr6A 100.000 216 0 0 1 216 507081436 507081651 4.840000e-107 399.0
2 TraesCS6A01G279300 chr6A 93.860 114 5 2 564 677 600701749 600701860 4.140000e-38 171.0
3 TraesCS6A01G279300 chr6D 97.401 4656 79 17 701 5348 366527891 366532512 0.000000e+00 7890.0
4 TraesCS6A01G279300 chr6D 92.492 3290 148 37 5374 8615 366532739 366535977 0.000000e+00 4615.0
5 TraesCS6A01G279300 chr6B 96.602 4238 105 20 699 4930 552233708 552237912 0.000000e+00 6992.0
6 TraesCS6A01G279300 chr6B 94.888 3306 111 31 4929 8203 552237990 552241268 0.000000e+00 5116.0
7 TraesCS6A01G279300 chr6B 86.988 415 32 5 8207 8615 552241305 552241703 1.710000e-121 448.0
8 TraesCS6A01G279300 chr6B 92.308 91 7 0 477 567 552230513 552230603 7.020000e-26 130.0
9 TraesCS6A01G279300 chr7B 97.170 106 1 2 566 670 706811143 706811039 2.470000e-40 178.0
10 TraesCS6A01G279300 chr7B 90.551 127 9 3 550 675 744290672 744290796 1.920000e-36 165.0
11 TraesCS6A01G279300 chr2B 97.170 106 2 1 567 671 629108629 629108524 2.470000e-40 178.0
12 TraesCS6A01G279300 chr2A 97.115 104 3 0 560 663 13287298 13287401 8.890000e-40 176.0
13 TraesCS6A01G279300 chr2A 97.115 104 3 0 560 663 704122599 704122496 8.890000e-40 176.0
14 TraesCS6A01G279300 chr5D 96.226 106 4 0 564 669 395728105 395728210 3.200000e-39 174.0
15 TraesCS6A01G279300 chr5B 90.984 122 9 2 546 666 229078898 229078778 6.920000e-36 163.0
16 TraesCS6A01G279300 chr1D 90.244 123 9 3 538 658 240128135 240128256 3.220000e-34 158.0
17 TraesCS6A01G279300 chr2D 91.228 57 5 0 2626 2682 111995786 111995730 2.580000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G279300 chr6A 507081436 507090050 8614 False 7715.0 15031 100.0000 1 8615 2 chr6A.!!$F2 8614
1 TraesCS6A01G279300 chr6D 366527891 366535977 8086 False 6252.5 7890 94.9465 701 8615 2 chr6D.!!$F1 7914
2 TraesCS6A01G279300 chr6B 552230513 552241703 11190 False 3171.5 6992 92.6965 477 8615 4 chr6B.!!$F1 8138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.031857 CTTTGTGTGCGGCCATTTGA 59.968 50.0 2.24 0.00 0.00 2.69 F
151 152 0.034477 ACGGATGCGGGAGGATTTTT 60.034 50.0 12.44 0.00 42.67 1.94 F
152 153 0.381801 CGGATGCGGGAGGATTTTTG 59.618 55.0 0.00 0.00 42.67 2.44 F
177 178 0.387929 CGCCGTTGGAGATAGCCTAA 59.612 55.0 0.00 0.00 0.00 2.69 F
666 667 0.539986 TGGAACGGAGGGAGTATTGC 59.460 55.0 0.00 0.00 0.00 3.56 F
1396 4466 0.586319 CCAAATCGACACGTGCAGTT 59.414 50.0 17.22 2.31 0.00 3.16 F
2672 5745 0.464013 TGACCGGCGAAAACCTGAAA 60.464 50.0 9.30 0.00 0.00 2.69 F
2684 5757 0.687354 ACCTGAAACGCCAGACTCAT 59.313 50.0 0.00 0.00 36.29 2.90 F
3204 6279 0.905357 CACTTCGTTCCATCCTCCCT 59.095 55.0 0.00 0.00 0.00 4.20 F
5309 8468 0.534203 TTTTTCCTCGTTGAGCCGCT 60.534 50.0 0.00 0.00 0.00 5.52 F
5388 8748 0.181824 GCCCCATATGTACCAACCGT 59.818 55.0 1.24 0.00 0.00 4.83 F
5697 9063 0.617820 AGAAGCACGTGGATAGGGGT 60.618 55.0 18.88 0.00 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 4772 0.613260 TGTGAGTAGGCACATGTCCC 59.387 55.000 0.00 0.00 43.35 4.46 R
1738 4808 4.947388 GGTTTGACCCACTAATATCAAGCA 59.053 41.667 0.00 0.00 34.91 3.91 R
2260 5330 2.429478 CGGTCTGGTCCGGTTTTTAAT 58.571 47.619 0.00 0.00 45.88 1.40 R
2455 5525 1.368345 CTGCGTTCGAATCCCATGCA 61.368 55.000 0.00 0.35 0.00 3.96 R
2672 5745 0.396435 TCAAACCATGAGTCTGGCGT 59.604 50.000 0.00 0.00 40.15 5.68 R
3502 6577 3.056607 ACCATTCCCAATGAAGAAAAGCG 60.057 43.478 0.00 0.00 41.46 4.68 R
3801 6876 0.035439 GATTTGCCCTTGACGGAGGA 60.035 55.000 3.60 0.00 39.25 3.71 R
3981 7056 0.953727 GGCTGCAATCACAGTGTGAA 59.046 50.000 28.70 12.25 45.96 3.18 R
5368 8527 0.181587 CGGTTGGTACATATGGGGCA 59.818 55.000 7.80 0.00 39.30 5.36 R
6644 10010 0.392461 GGAATCACCCGCAACTAGCA 60.392 55.000 0.00 0.00 46.13 3.49 R
7021 10387 0.523072 CCGCTGATTTGTTCCACTGG 59.477 55.000 0.00 0.00 0.00 4.00 R
7721 11097 0.586319 TTTCGCTTCAAGCCTGTTCG 59.414 50.000 3.08 0.00 38.18 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.542574 TTTAACGTATGTACCCTTTGTGTG 57.457 37.500 0.00 0.00 0.00 3.82
25 26 2.419667 ACGTATGTACCCTTTGTGTGC 58.580 47.619 0.00 0.00 0.00 4.57
26 27 1.392168 CGTATGTACCCTTTGTGTGCG 59.608 52.381 0.00 0.00 0.00 5.34
27 28 1.735571 GTATGTACCCTTTGTGTGCGG 59.264 52.381 0.00 0.00 0.00 5.69
28 29 1.241315 ATGTACCCTTTGTGTGCGGC 61.241 55.000 0.00 0.00 0.00 6.53
29 30 2.281900 TACCCTTTGTGTGCGGCC 60.282 61.111 0.00 0.00 0.00 6.13
30 31 3.121406 TACCCTTTGTGTGCGGCCA 62.121 57.895 2.24 0.00 0.00 5.36
31 32 2.419011 TACCCTTTGTGTGCGGCCAT 62.419 55.000 2.24 0.00 0.00 4.40
32 33 2.573083 CCCTTTGTGTGCGGCCATT 61.573 57.895 2.24 0.00 0.00 3.16
33 34 1.367102 CCTTTGTGTGCGGCCATTT 59.633 52.632 2.24 0.00 0.00 2.32
34 35 0.945265 CCTTTGTGTGCGGCCATTTG 60.945 55.000 2.24 0.00 0.00 2.32
35 36 0.031857 CTTTGTGTGCGGCCATTTGA 59.968 50.000 2.24 0.00 0.00 2.69
36 37 0.678395 TTTGTGTGCGGCCATTTGAT 59.322 45.000 2.24 0.00 0.00 2.57
37 38 0.243365 TTGTGTGCGGCCATTTGATC 59.757 50.000 2.24 0.00 0.00 2.92
38 39 1.226379 GTGTGCGGCCATTTGATCG 60.226 57.895 2.24 0.00 0.00 3.69
39 40 1.673993 TGTGCGGCCATTTGATCGT 60.674 52.632 2.24 0.00 0.00 3.73
40 41 1.226379 GTGCGGCCATTTGATCGTG 60.226 57.895 2.24 0.00 0.00 4.35
41 42 2.278142 GCGGCCATTTGATCGTGC 60.278 61.111 2.24 0.00 0.00 5.34
42 43 2.023181 CGGCCATTTGATCGTGCG 59.977 61.111 2.24 0.00 0.00 5.34
43 44 2.408835 GGCCATTTGATCGTGCGG 59.591 61.111 0.00 0.00 0.00 5.69
44 45 2.112198 GGCCATTTGATCGTGCGGA 61.112 57.895 0.00 0.00 0.00 5.54
45 46 1.062525 GCCATTTGATCGTGCGGAC 59.937 57.895 0.00 0.00 0.00 4.79
46 47 1.369091 GCCATTTGATCGTGCGGACT 61.369 55.000 5.27 0.00 0.00 3.85
47 48 1.086696 CCATTTGATCGTGCGGACTT 58.913 50.000 5.27 0.00 0.00 3.01
48 49 2.276201 CCATTTGATCGTGCGGACTTA 58.724 47.619 5.27 0.00 0.00 2.24
49 50 2.675844 CCATTTGATCGTGCGGACTTAA 59.324 45.455 5.27 0.00 0.00 1.85
50 51 3.126171 CCATTTGATCGTGCGGACTTAAA 59.874 43.478 5.27 0.00 0.00 1.52
51 52 4.378978 CCATTTGATCGTGCGGACTTAAAA 60.379 41.667 5.27 1.28 0.00 1.52
52 53 4.815040 TTTGATCGTGCGGACTTAAAAA 57.185 36.364 5.27 0.00 0.00 1.94
76 77 6.396829 AAATAAGGAAAGCAGGATGTATGC 57.603 37.500 0.00 0.00 44.18 3.14
77 78 3.370840 AAGGAAAGCAGGATGTATGCA 57.629 42.857 0.00 0.00 46.31 3.96
78 79 2.928334 AGGAAAGCAGGATGTATGCAG 58.072 47.619 0.00 0.00 46.31 4.41
79 80 1.336125 GGAAAGCAGGATGTATGCAGC 59.664 52.381 0.00 0.00 46.31 5.25
80 81 2.295885 GAAAGCAGGATGTATGCAGCT 58.704 47.619 0.00 0.00 46.31 4.24
81 82 3.470709 GAAAGCAGGATGTATGCAGCTA 58.529 45.455 3.90 0.00 46.31 3.32
82 83 2.540265 AGCAGGATGTATGCAGCTAC 57.460 50.000 1.62 0.00 46.31 3.58
83 84 1.764723 AGCAGGATGTATGCAGCTACA 59.235 47.619 2.76 2.76 46.31 2.74
84 85 2.141517 GCAGGATGTATGCAGCTACAG 58.858 52.381 6.35 0.00 43.31 2.74
85 86 2.484417 GCAGGATGTATGCAGCTACAGT 60.484 50.000 6.35 0.00 43.31 3.55
86 87 3.801698 CAGGATGTATGCAGCTACAGTT 58.198 45.455 6.35 0.00 35.21 3.16
87 88 3.558829 CAGGATGTATGCAGCTACAGTTG 59.441 47.826 6.35 1.78 35.21 3.16
88 89 2.874701 GGATGTATGCAGCTACAGTTGG 59.125 50.000 6.35 0.00 35.21 3.77
89 90 3.432186 GGATGTATGCAGCTACAGTTGGA 60.432 47.826 6.35 0.00 35.21 3.53
90 91 3.912496 TGTATGCAGCTACAGTTGGAT 57.088 42.857 5.49 5.49 40.10 3.41
91 92 3.534554 TGTATGCAGCTACAGTTGGATG 58.465 45.455 9.74 0.00 37.78 3.51
92 93 1.386533 ATGCAGCTACAGTTGGATGC 58.613 50.000 8.82 8.82 36.13 3.91
93 94 0.677731 TGCAGCTACAGTTGGATGCC 60.678 55.000 12.00 0.00 32.77 4.40
94 95 1.709147 GCAGCTACAGTTGGATGCCG 61.709 60.000 5.47 0.00 0.00 5.69
95 96 0.391661 CAGCTACAGTTGGATGCCGT 60.392 55.000 0.00 0.00 0.00 5.68
96 97 0.108138 AGCTACAGTTGGATGCCGTC 60.108 55.000 0.00 0.00 0.00 4.79
104 105 2.125106 GGATGCCGTCCCTGTGTC 60.125 66.667 0.00 0.00 41.50 3.67
105 106 2.125106 GATGCCGTCCCTGTGTCC 60.125 66.667 0.00 0.00 0.00 4.02
106 107 4.082523 ATGCCGTCCCTGTGTCCG 62.083 66.667 0.00 0.00 0.00 4.79
109 110 4.742201 CCGTCCCTGTGTCCGCAG 62.742 72.222 0.83 0.83 36.31 5.18
110 111 3.680786 CGTCCCTGTGTCCGCAGA 61.681 66.667 9.35 0.00 38.70 4.26
111 112 2.048127 GTCCCTGTGTCCGCAGAC 60.048 66.667 9.35 0.00 43.83 3.51
112 113 2.203640 TCCCTGTGTCCGCAGACT 60.204 61.111 9.35 0.00 43.91 3.24
113 114 2.047844 CCCTGTGTCCGCAGACTG 60.048 66.667 9.35 0.00 43.91 3.51
114 115 2.740055 CCTGTGTCCGCAGACTGC 60.740 66.667 17.84 17.84 43.91 4.40
115 116 2.341543 CTGTGTCCGCAGACTGCT 59.658 61.111 24.36 0.00 43.91 4.24
116 117 1.735920 CTGTGTCCGCAGACTGCTC 60.736 63.158 24.36 14.72 43.91 4.26
117 118 2.433318 GTGTCCGCAGACTGCTCC 60.433 66.667 24.36 12.41 43.91 4.70
118 119 3.695606 TGTCCGCAGACTGCTCCC 61.696 66.667 24.36 12.08 43.91 4.30
119 120 4.459089 GTCCGCAGACTGCTCCCC 62.459 72.222 24.36 6.68 42.25 4.81
147 148 3.234730 GGACGGATGCGGGAGGAT 61.235 66.667 12.44 0.00 46.51 3.24
148 149 2.808206 GGACGGATGCGGGAGGATT 61.808 63.158 12.44 0.00 42.67 3.01
149 150 1.146263 GACGGATGCGGGAGGATTT 59.854 57.895 12.44 0.00 42.67 2.17
150 151 0.463833 GACGGATGCGGGAGGATTTT 60.464 55.000 12.44 0.00 42.67 1.82
151 152 0.034477 ACGGATGCGGGAGGATTTTT 60.034 50.000 12.44 0.00 42.67 1.94
152 153 0.381801 CGGATGCGGGAGGATTTTTG 59.618 55.000 0.00 0.00 42.67 2.44
153 154 1.474330 GGATGCGGGAGGATTTTTGT 58.526 50.000 0.00 0.00 42.67 2.83
154 155 1.134946 GGATGCGGGAGGATTTTTGTG 59.865 52.381 0.00 0.00 42.67 3.33
155 156 1.134946 GATGCGGGAGGATTTTTGTGG 59.865 52.381 0.00 0.00 42.67 4.17
156 157 0.897863 TGCGGGAGGATTTTTGTGGG 60.898 55.000 0.00 0.00 0.00 4.61
157 158 1.890174 CGGGAGGATTTTTGTGGGC 59.110 57.895 0.00 0.00 0.00 5.36
158 159 1.604147 CGGGAGGATTTTTGTGGGCC 61.604 60.000 0.00 0.00 0.00 5.80
159 160 1.604147 GGGAGGATTTTTGTGGGCCG 61.604 60.000 0.00 0.00 0.00 6.13
160 161 1.215382 GAGGATTTTTGTGGGCCGC 59.785 57.895 10.94 10.94 0.00 6.53
161 162 2.225791 GAGGATTTTTGTGGGCCGCC 62.226 60.000 15.75 0.00 0.00 6.13
162 163 2.126110 GATTTTTGTGGGCCGCCG 60.126 61.111 15.75 0.00 0.00 6.46
163 164 2.915137 ATTTTTGTGGGCCGCCGT 60.915 55.556 15.75 0.00 0.00 5.68
164 165 2.428960 GATTTTTGTGGGCCGCCGTT 62.429 55.000 15.75 0.00 0.00 4.44
165 166 2.707529 ATTTTTGTGGGCCGCCGTTG 62.708 55.000 15.75 0.00 0.00 4.10
171 172 3.857038 GGGCCGCCGTTGGAGATA 61.857 66.667 2.55 0.00 0.00 1.98
172 173 2.280186 GGCCGCCGTTGGAGATAG 60.280 66.667 0.00 0.00 0.00 2.08
173 174 2.967615 GCCGCCGTTGGAGATAGC 60.968 66.667 0.00 0.00 0.00 2.97
174 175 2.280186 CCGCCGTTGGAGATAGCC 60.280 66.667 0.00 0.00 0.00 3.93
175 176 2.797278 CCGCCGTTGGAGATAGCCT 61.797 63.158 0.00 0.00 0.00 4.58
176 177 1.461091 CCGCCGTTGGAGATAGCCTA 61.461 60.000 0.00 0.00 0.00 3.93
177 178 0.387929 CGCCGTTGGAGATAGCCTAA 59.612 55.000 0.00 0.00 0.00 2.69
178 179 1.867166 GCCGTTGGAGATAGCCTAAC 58.133 55.000 0.00 0.00 0.00 2.34
179 180 1.868519 GCCGTTGGAGATAGCCTAACG 60.869 57.143 9.82 9.82 39.68 3.18
180 181 1.679680 CCGTTGGAGATAGCCTAACGA 59.320 52.381 15.68 0.00 41.03 3.85
181 182 2.100252 CCGTTGGAGATAGCCTAACGAA 59.900 50.000 15.68 0.00 41.03 3.85
182 183 3.243771 CCGTTGGAGATAGCCTAACGAAT 60.244 47.826 15.68 0.00 41.03 3.34
183 184 4.369182 CGTTGGAGATAGCCTAACGAATT 58.631 43.478 10.84 0.00 41.03 2.17
184 185 5.508489 CCGTTGGAGATAGCCTAACGAATTA 60.508 44.000 15.68 0.00 41.03 1.40
185 186 6.157211 CGTTGGAGATAGCCTAACGAATTAT 58.843 40.000 10.84 0.00 41.03 1.28
186 187 7.310664 CGTTGGAGATAGCCTAACGAATTATA 58.689 38.462 10.84 0.00 41.03 0.98
187 188 7.811236 CGTTGGAGATAGCCTAACGAATTATAA 59.189 37.037 10.84 0.00 41.03 0.98
188 189 9.141400 GTTGGAGATAGCCTAACGAATTATAAG 57.859 37.037 0.00 0.00 0.00 1.73
189 190 7.321153 TGGAGATAGCCTAACGAATTATAAGC 58.679 38.462 0.00 0.00 0.00 3.09
190 191 6.472808 GGAGATAGCCTAACGAATTATAAGCG 59.527 42.308 8.47 8.47 0.00 4.68
191 192 7.154435 AGATAGCCTAACGAATTATAAGCGA 57.846 36.000 14.97 0.00 0.00 4.93
192 193 7.773149 AGATAGCCTAACGAATTATAAGCGAT 58.227 34.615 14.97 7.69 0.00 4.58
193 194 7.916450 AGATAGCCTAACGAATTATAAGCGATC 59.084 37.037 14.97 9.61 33.16 3.69
194 195 4.857588 AGCCTAACGAATTATAAGCGATCG 59.142 41.667 11.69 11.69 39.30 3.69
195 196 4.855388 GCCTAACGAATTATAAGCGATCGA 59.145 41.667 21.57 0.00 37.27 3.59
196 197 5.003590 GCCTAACGAATTATAAGCGATCGAG 59.996 44.000 21.57 1.26 37.27 4.04
197 198 6.312487 CCTAACGAATTATAAGCGATCGAGA 58.688 40.000 21.57 2.50 37.27 4.04
198 199 6.466413 CCTAACGAATTATAAGCGATCGAGAG 59.534 42.308 21.57 11.51 37.27 3.20
496 497 0.818040 ACTGTCAGAAAACCCACCGC 60.818 55.000 6.91 0.00 0.00 5.68
505 506 3.545124 AACCCACCGCATTCGCTCA 62.545 57.895 0.00 0.00 35.30 4.26
510 511 1.815421 ACCGCATTCGCTCACCATC 60.815 57.895 0.00 0.00 35.30 3.51
516 517 1.731709 CATTCGCTCACCATCGAAACA 59.268 47.619 1.21 0.00 45.92 2.83
526 527 3.873361 CACCATCGAAACAGATGCTATGT 59.127 43.478 0.00 0.00 44.86 2.29
527 528 3.873361 ACCATCGAAACAGATGCTATGTG 59.127 43.478 0.00 0.00 44.86 3.21
529 530 4.753610 CCATCGAAACAGATGCTATGTGAT 59.246 41.667 0.00 0.00 44.86 3.06
567 568 4.516365 TGACATGTTGCATTGCATTGTA 57.484 36.364 12.95 2.93 38.76 2.41
568 569 4.236147 TGACATGTTGCATTGCATTGTAC 58.764 39.130 12.95 8.17 38.76 2.90
570 571 4.487948 ACATGTTGCATTGCATTGTACTC 58.512 39.130 12.95 3.15 38.76 2.59
572 573 2.230992 TGTTGCATTGCATTGTACTCCC 59.769 45.455 12.95 0.00 38.76 4.30
574 575 2.368439 TGCATTGCATTGTACTCCCTC 58.632 47.619 7.38 0.00 31.71 4.30
575 576 1.678101 GCATTGCATTGTACTCCCTCC 59.322 52.381 10.11 0.00 0.00 4.30
576 577 1.942657 CATTGCATTGTACTCCCTCCG 59.057 52.381 0.30 0.00 0.00 4.63
577 578 0.981183 TTGCATTGTACTCCCTCCGT 59.019 50.000 0.00 0.00 0.00 4.69
578 579 0.981183 TGCATTGTACTCCCTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
579 580 1.066430 TGCATTGTACTCCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
581 582 1.553248 CATTGTACTCCCTCCGTTCCA 59.447 52.381 0.00 0.00 0.00 3.53
583 584 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
585 586 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
586 587 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
587 588 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
588 589 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
589 590 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
590 591 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
591 592 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
592 593 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
593 594 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
594 595 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
595 596 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
596 597 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
597 598 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
598 599 6.884295 TCCGTTCCAAAATAGATGACTCAATT 59.116 34.615 0.00 0.00 0.00 2.32
599 600 7.393234 TCCGTTCCAAAATAGATGACTCAATTT 59.607 33.333 0.00 0.00 0.00 1.82
600 601 8.028938 CCGTTCCAAAATAGATGACTCAATTTT 58.971 33.333 0.00 0.00 33.07 1.82
601 602 8.853345 CGTTCCAAAATAGATGACTCAATTTTG 58.147 33.333 15.00 15.00 43.77 2.44
602 603 9.696917 GTTCCAAAATAGATGACTCAATTTTGT 57.303 29.630 18.01 0.00 43.14 2.83
638 639 9.310716 AGTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 6.30 0.00 43.24 3.36
639 640 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
640 641 8.732746 ACAAAGTTAGTACAAAGTTGAGTCAT 57.267 30.769 0.00 0.00 0.00 3.06
641 642 8.827677 ACAAAGTTAGTACAAAGTTGAGTCATC 58.172 33.333 0.00 0.00 0.00 2.92
642 643 9.046296 CAAAGTTAGTACAAAGTTGAGTCATCT 57.954 33.333 0.00 0.00 0.00 2.90
649 650 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
650 651 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
651 652 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
652 653 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
653 654 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
654 655 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
655 656 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
656 657 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
657 658 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
658 659 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
659 660 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
660 661 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
661 662 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
662 663 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
663 664 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
664 665 4.586306 ATTTTGGAACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
665 666 3.343941 TTTGGAACGGAGGGAGTATTG 57.656 47.619 0.00 0.00 0.00 1.90
666 667 0.539986 TGGAACGGAGGGAGTATTGC 59.460 55.000 0.00 0.00 0.00 3.56
667 668 0.831307 GGAACGGAGGGAGTATTGCT 59.169 55.000 0.00 0.00 0.00 3.91
668 669 1.209747 GGAACGGAGGGAGTATTGCTT 59.790 52.381 0.00 0.00 0.00 3.91
669 670 2.433239 GGAACGGAGGGAGTATTGCTTA 59.567 50.000 0.00 0.00 0.00 3.09
670 671 3.071167 GGAACGGAGGGAGTATTGCTTAT 59.929 47.826 0.00 0.00 0.00 1.73
671 672 4.282703 GGAACGGAGGGAGTATTGCTTATA 59.717 45.833 0.00 0.00 0.00 0.98
672 673 5.046520 GGAACGGAGGGAGTATTGCTTATAT 60.047 44.000 0.00 0.00 0.00 0.86
673 674 5.662674 ACGGAGGGAGTATTGCTTATATC 57.337 43.478 0.00 0.00 0.00 1.63
674 675 4.466726 ACGGAGGGAGTATTGCTTATATCC 59.533 45.833 0.00 0.00 0.00 2.59
675 676 4.466370 CGGAGGGAGTATTGCTTATATCCA 59.534 45.833 0.00 0.00 0.00 3.41
676 677 5.394663 CGGAGGGAGTATTGCTTATATCCAG 60.395 48.000 0.00 0.00 0.00 3.86
677 678 5.423886 GAGGGAGTATTGCTTATATCCAGC 58.576 45.833 0.63 0.63 37.82 4.85
678 679 4.226168 AGGGAGTATTGCTTATATCCAGCC 59.774 45.833 4.72 0.00 36.33 4.85
679 680 4.019321 GGGAGTATTGCTTATATCCAGCCA 60.019 45.833 4.72 0.00 36.33 4.75
680 681 5.181748 GGAGTATTGCTTATATCCAGCCAG 58.818 45.833 4.72 0.00 36.33 4.85
701 702 4.569966 CAGAAGATGAAAGGGTCGAATCTG 59.430 45.833 0.00 0.00 0.00 2.90
702 703 4.467795 AGAAGATGAAAGGGTCGAATCTGA 59.532 41.667 0.00 0.00 0.00 3.27
704 705 4.764172 AGATGAAAGGGTCGAATCTGAAG 58.236 43.478 0.00 0.00 0.00 3.02
705 706 3.334583 TGAAAGGGTCGAATCTGAAGG 57.665 47.619 0.00 0.00 0.00 3.46
706 707 2.903784 TGAAAGGGTCGAATCTGAAGGA 59.096 45.455 0.00 0.00 0.00 3.36
713 714 4.003648 GGTCGAATCTGAAGGACACAAAT 58.996 43.478 0.00 0.00 0.00 2.32
778 3845 4.580167 ACAAAGAAGCACTCAAACTATGCA 59.420 37.500 0.00 0.00 41.97 3.96
780 3847 3.743521 AGAAGCACTCAAACTATGCACA 58.256 40.909 0.00 0.00 41.97 4.57
827 3894 1.135228 GCACCCGTTTGTTTCACTGTT 60.135 47.619 0.00 0.00 0.00 3.16
828 3895 2.097791 GCACCCGTTTGTTTCACTGTTA 59.902 45.455 0.00 0.00 0.00 2.41
902 3972 3.134792 ACAGATCCGAGCTCGCGT 61.135 61.111 30.49 20.02 38.18 6.01
921 3991 4.233635 CGCCTACCTCGACGACCG 62.234 72.222 0.00 0.00 40.25 4.79
1355 4425 2.041350 TCGAGAACCTCAAGTACCTCCT 59.959 50.000 0.00 0.00 0.00 3.69
1396 4466 0.586319 CCAAATCGACACGTGCAGTT 59.414 50.000 17.22 2.31 0.00 3.16
1450 4520 5.964168 CGAATGAGCAATCTTTTCATCTGTC 59.036 40.000 0.00 0.00 31.50 3.51
1702 4772 6.126507 TGTGCCCTATATACCATGATAATGGG 60.127 42.308 14.08 2.94 45.84 4.00
1749 4819 9.775539 AGAGGATCCTATACTTGCTTGATATTA 57.224 33.333 16.16 0.00 33.66 0.98
2260 5330 7.299896 TCCTAAGTACCATTGTAGGCATAGTA 58.700 38.462 0.00 0.00 34.30 1.82
2455 5525 6.087555 CGTGAGTGCTAAAATTTTATTGCGTT 59.912 34.615 10.97 4.95 0.00 4.84
2599 5669 9.029368 GTTCCTCCCCTATTATATTAGTACGTT 57.971 37.037 0.00 0.00 0.00 3.99
2672 5745 0.464013 TGACCGGCGAAAACCTGAAA 60.464 50.000 9.30 0.00 0.00 2.69
2684 5757 0.687354 ACCTGAAACGCCAGACTCAT 59.313 50.000 0.00 0.00 36.29 2.90
2695 5768 3.285484 GCCAGACTCATGGTTTGATCAT 58.715 45.455 0.00 0.00 42.75 2.45
2706 5779 4.326826 TGGTTTGATCATCAGTCTGGTTC 58.673 43.478 0.00 0.00 0.00 3.62
2707 5780 4.042062 TGGTTTGATCATCAGTCTGGTTCT 59.958 41.667 0.00 0.00 0.00 3.01
2708 5781 5.006386 GGTTTGATCATCAGTCTGGTTCTT 58.994 41.667 0.00 0.00 0.00 2.52
2709 5782 6.173339 GGTTTGATCATCAGTCTGGTTCTTA 58.827 40.000 0.00 0.00 0.00 2.10
2760 5833 3.139077 AGAAAGCCTTTCACTTACACCG 58.861 45.455 18.81 0.00 42.10 4.94
2772 5845 5.845103 TCACTTACACCGACTTGATTGTTA 58.155 37.500 0.00 0.00 0.00 2.41
2934 6008 3.800685 TTGCGTGAGGTGTGACCGG 62.801 63.158 0.00 0.00 44.90 5.28
3197 6272 3.066203 GTCCAAACAACACTTCGTTCCAT 59.934 43.478 0.00 0.00 34.86 3.41
3204 6279 0.905357 CACTTCGTTCCATCCTCCCT 59.095 55.000 0.00 0.00 0.00 4.20
3669 6744 5.047235 CAGCTTACTACTACCAGGTTCAGTT 60.047 44.000 0.00 0.00 0.00 3.16
3693 6768 4.342862 AATCTTCTGTACACAGCACTGT 57.657 40.909 4.43 0.00 46.17 3.55
3801 6876 3.643792 AGAAGAGGTGTGCTTTAGAGTGT 59.356 43.478 0.00 0.00 0.00 3.55
3805 6880 2.300437 AGGTGTGCTTTAGAGTGTCCTC 59.700 50.000 0.00 0.00 38.04 3.71
4336 7411 2.680312 TTCACTAGAGATGGCTGCAC 57.320 50.000 0.50 0.00 0.00 4.57
4723 7798 3.146066 GTCATGGTTAGTGCACAGGAAA 58.854 45.455 21.04 4.73 0.00 3.13
4995 8149 5.242393 CACCACATGAGTTGGAGAAGAAAAT 59.758 40.000 7.78 0.00 0.00 1.82
5161 8315 3.010584 AGAGCACACATTGGTTAAGGGAT 59.989 43.478 0.00 0.00 35.52 3.85
5232 8386 2.516227 TCGTCTTCTCCATCTCCAGT 57.484 50.000 0.00 0.00 0.00 4.00
5309 8468 0.534203 TTTTTCCTCGTTGAGCCGCT 60.534 50.000 0.00 0.00 0.00 5.52
5388 8748 0.181824 GCCCCATATGTACCAACCGT 59.818 55.000 1.24 0.00 0.00 4.83
5425 8789 2.378634 GCCATCCCTGTAGCCTGGT 61.379 63.158 0.00 0.00 0.00 4.00
5436 8800 2.993264 GCCTGGTGCTGGCATTGT 60.993 61.111 0.00 0.00 45.75 2.71
5440 8804 2.283101 GGTGCTGGCATTGTCCCA 60.283 61.111 0.00 0.00 0.00 4.37
5554 8918 1.674764 CCTCTGCCTCAGTCTGCGAT 61.675 60.000 0.00 0.00 32.61 4.58
5600 8964 2.667536 CTCTTGTGGCAGCACGCT 60.668 61.111 0.00 0.00 41.91 5.07
5697 9063 0.617820 AGAAGCACGTGGATAGGGGT 60.618 55.000 18.88 0.00 0.00 4.95
5760 9126 3.067106 CCGAGGATGTACAATGCATACC 58.933 50.000 0.00 0.00 0.00 2.73
5872 9238 5.514274 ACTTGGGATTTATTAACCATGCG 57.486 39.130 0.00 0.00 32.99 4.73
5973 9339 4.422073 TCTGCCATATCCGAAAGTTGAT 57.578 40.909 0.00 0.00 0.00 2.57
6047 9413 1.135721 GCCTGCCTATTTGCTTCTTGG 59.864 52.381 0.00 0.00 0.00 3.61
6120 9486 7.571080 TTTTCCTACCACGAGTTGTAAAATT 57.429 32.000 0.00 0.00 0.00 1.82
6188 9554 4.412207 GAATGTTTATCGGTGAAGGCAAC 58.588 43.478 0.00 0.00 0.00 4.17
6205 9571 5.965922 AGGCAACAATAAATAAGCACCTTC 58.034 37.500 0.00 0.00 41.41 3.46
6594 9960 4.402056 TGAAGTGTCGAAGGAAGAAGTT 57.598 40.909 0.00 0.00 0.00 2.66
6644 10010 1.129058 GGGGTCGTATCAGTTCCCAT 58.871 55.000 0.00 0.00 39.85 4.00
6646 10012 1.583054 GGTCGTATCAGTTCCCATGC 58.417 55.000 0.00 0.00 0.00 4.06
7059 10425 3.611766 GCGGACTATCTGATGAATACGCA 60.612 47.826 17.17 0.00 42.44 5.24
7086 10452 2.131183 GCTCCTAGCGCAGAATACAAG 58.869 52.381 11.47 0.00 0.00 3.16
7191 10557 5.602145 AGTCCTTGGAGAGAATCAAGATAGG 59.398 44.000 4.83 0.00 41.94 2.57
7200 10566 4.360563 AGAATCAAGATAGGCGTGTTACG 58.639 43.478 0.00 0.00 45.88 3.18
7257 10623 1.286880 GCCGCTTGTTGTGAGCATT 59.713 52.632 0.00 0.00 40.13 3.56
7386 10752 2.452600 ACTTTGTTTTCTCTGGGGCA 57.547 45.000 0.00 0.00 0.00 5.36
7485 10851 2.240500 GCAGCTGCCGAGGATAACG 61.241 63.158 28.76 0.00 34.31 3.18
7690 11066 0.534203 AACGCCGCTGGAAAGAGAAA 60.534 50.000 0.00 0.00 0.00 2.52
7691 11067 0.951040 ACGCCGCTGGAAAGAGAAAG 60.951 55.000 0.00 0.00 0.00 2.62
7696 11072 3.274288 CCGCTGGAAAGAGAAAGCTATT 58.726 45.455 0.00 0.00 33.41 1.73
7721 11097 0.687354 TTCAGTCTCACCTCCTTGCC 59.313 55.000 0.00 0.00 0.00 4.52
7749 11125 2.154389 GCTTGAAGCGAAAATGCTGTTG 59.846 45.455 0.00 0.00 46.60 3.33
8011 11393 7.678947 ATCTTCAGGTTCATTGTTTCTGTAG 57.321 36.000 0.00 0.00 0.00 2.74
8038 11420 6.147164 ACTTGTGTTTAACCATACTGACATCG 59.853 38.462 0.00 0.00 0.00 3.84
8051 11438 1.078709 GACATCGCTGCTGCTACAAA 58.921 50.000 14.03 0.00 36.97 2.83
8060 11447 4.406943 GCTGCTGCTACAAACTTTCATAC 58.593 43.478 8.53 0.00 36.03 2.39
8069 11456 5.514274 ACAAACTTTCATACCCAGTGTTG 57.486 39.130 0.00 0.00 0.00 3.33
8071 11458 5.067283 ACAAACTTTCATACCCAGTGTTGTC 59.933 40.000 0.00 0.00 0.00 3.18
8073 11460 3.394606 ACTTTCATACCCAGTGTTGTCCT 59.605 43.478 0.00 0.00 0.00 3.85
8075 11462 5.072600 ACTTTCATACCCAGTGTTGTCCTTA 59.927 40.000 0.00 0.00 0.00 2.69
8076 11463 4.819105 TCATACCCAGTGTTGTCCTTAG 57.181 45.455 0.00 0.00 0.00 2.18
8078 11465 4.595781 TCATACCCAGTGTTGTCCTTAGTT 59.404 41.667 0.00 0.00 0.00 2.24
8079 11466 3.945640 ACCCAGTGTTGTCCTTAGTTT 57.054 42.857 0.00 0.00 0.00 2.66
8080 11467 3.816994 ACCCAGTGTTGTCCTTAGTTTC 58.183 45.455 0.00 0.00 0.00 2.78
8081 11468 3.458487 ACCCAGTGTTGTCCTTAGTTTCT 59.542 43.478 0.00 0.00 0.00 2.52
8082 11469 4.065789 CCCAGTGTTGTCCTTAGTTTCTC 58.934 47.826 0.00 0.00 0.00 2.87
8088 11475 7.065803 CAGTGTTGTCCTTAGTTTCTCTTTTCA 59.934 37.037 0.00 0.00 0.00 2.69
8089 11476 7.281100 AGTGTTGTCCTTAGTTTCTCTTTTCAG 59.719 37.037 0.00 0.00 0.00 3.02
8090 11477 6.038271 TGTTGTCCTTAGTTTCTCTTTTCAGC 59.962 38.462 0.00 0.00 0.00 4.26
8091 11478 4.750098 TGTCCTTAGTTTCTCTTTTCAGCG 59.250 41.667 0.00 0.00 0.00 5.18
8092 11479 4.750598 GTCCTTAGTTTCTCTTTTCAGCGT 59.249 41.667 0.00 0.00 0.00 5.07
8093 11480 5.924825 GTCCTTAGTTTCTCTTTTCAGCGTA 59.075 40.000 0.00 0.00 0.00 4.42
8094 11481 6.423001 GTCCTTAGTTTCTCTTTTCAGCGTAA 59.577 38.462 0.00 0.00 0.00 3.18
8095 11482 6.987992 TCCTTAGTTTCTCTTTTCAGCGTAAA 59.012 34.615 0.00 0.00 0.00 2.01
8096 11483 7.496591 TCCTTAGTTTCTCTTTTCAGCGTAAAA 59.503 33.333 0.36 0.36 0.00 1.52
8126 11513 8.797266 AAAGCTTTTTACTCCTATTTTTGTCG 57.203 30.769 5.69 0.00 0.00 4.35
8128 11515 6.016610 AGCTTTTTACTCCTATTTTTGTCGCA 60.017 34.615 0.00 0.00 0.00 5.10
8129 11516 6.639279 GCTTTTTACTCCTATTTTTGTCGCAA 59.361 34.615 0.00 0.00 0.00 4.85
8130 11517 7.328493 GCTTTTTACTCCTATTTTTGTCGCAAT 59.672 33.333 0.00 0.00 0.00 3.56
8131 11518 9.191995 CTTTTTACTCCTATTTTTGTCGCAATT 57.808 29.630 0.00 0.00 0.00 2.32
8133 11520 8.736751 TTTACTCCTATTTTTGTCGCAATTTC 57.263 30.769 0.00 0.00 0.00 2.17
8134 11521 5.709966 ACTCCTATTTTTGTCGCAATTTCC 58.290 37.500 0.00 0.00 0.00 3.13
8135 11522 5.242838 ACTCCTATTTTTGTCGCAATTTCCA 59.757 36.000 0.00 0.00 0.00 3.53
8136 11523 5.708948 TCCTATTTTTGTCGCAATTTCCAG 58.291 37.500 0.00 0.00 0.00 3.86
8137 11524 5.242838 TCCTATTTTTGTCGCAATTTCCAGT 59.757 36.000 0.00 0.00 0.00 4.00
8139 11526 7.040340 TCCTATTTTTGTCGCAATTTCCAGTAA 60.040 33.333 0.00 0.00 0.00 2.24
8140 11527 7.596995 CCTATTTTTGTCGCAATTTCCAGTAAA 59.403 33.333 0.00 0.00 0.00 2.01
8141 11528 7.778470 ATTTTTGTCGCAATTTCCAGTAAAA 57.222 28.000 0.00 0.00 0.00 1.52
8149 11537 5.925969 CGCAATTTCCAGTAAAAGAAATGGT 59.074 36.000 0.00 0.00 40.84 3.55
8151 11539 6.705825 GCAATTTCCAGTAAAAGAAATGGTGT 59.294 34.615 0.00 0.00 40.84 4.16
8152 11540 7.307337 GCAATTTCCAGTAAAAGAAATGGTGTG 60.307 37.037 0.00 0.00 40.84 3.82
8155 11543 6.817765 TCCAGTAAAAGAAATGGTGTGATC 57.182 37.500 0.00 0.00 34.32 2.92
8178 11566 7.448748 TCTCCAGTAATTTTTACTGCCTTTC 57.551 36.000 17.85 0.00 42.53 2.62
8179 11567 6.148811 TCTCCAGTAATTTTTACTGCCTTTCG 59.851 38.462 17.85 7.12 42.53 3.46
8180 11568 5.998981 TCCAGTAATTTTTACTGCCTTTCGA 59.001 36.000 17.85 8.85 42.53 3.71
8181 11569 6.072893 TCCAGTAATTTTTACTGCCTTTCGAC 60.073 38.462 17.85 0.00 42.53 4.20
8183 11571 6.002082 AGTAATTTTTACTGCCTTTCGACCT 58.998 36.000 0.00 0.00 0.00 3.85
8185 11573 3.478857 TTTTACTGCCTTTCGACCTCA 57.521 42.857 0.00 0.00 0.00 3.86
8186 11574 3.695830 TTTACTGCCTTTCGACCTCAT 57.304 42.857 0.00 0.00 0.00 2.90
8187 11575 2.961526 TACTGCCTTTCGACCTCATC 57.038 50.000 0.00 0.00 0.00 2.92
8189 11577 1.066573 ACTGCCTTTCGACCTCATCTG 60.067 52.381 0.00 0.00 0.00 2.90
8190 11578 0.391661 TGCCTTTCGACCTCATCTGC 60.392 55.000 0.00 0.00 0.00 4.26
8191 11579 0.391661 GCCTTTCGACCTCATCTGCA 60.392 55.000 0.00 0.00 0.00 4.41
8193 11581 2.636830 CCTTTCGACCTCATCTGCAAT 58.363 47.619 0.00 0.00 0.00 3.56
8194 11582 2.353889 CCTTTCGACCTCATCTGCAATG 59.646 50.000 0.00 0.00 0.00 2.82
8195 11583 1.372582 TTCGACCTCATCTGCAATGC 58.627 50.000 0.00 0.00 0.00 3.56
8196 11584 0.249955 TCGACCTCATCTGCAATGCA 59.750 50.000 7.99 7.99 36.92 3.96
8203 11591 4.142227 ACCTCATCTGCAATGCAAAGATTC 60.142 41.667 9.92 0.00 38.41 2.52
8204 11592 4.360563 CTCATCTGCAATGCAAAGATTCC 58.639 43.478 9.92 0.00 38.41 3.01
8205 11593 4.021229 TCATCTGCAATGCAAAGATTCCT 58.979 39.130 9.92 0.00 38.41 3.36
8209 11630 2.892215 TGCAATGCAAAGATTCCTGTGA 59.108 40.909 5.01 0.00 34.76 3.58
8213 11634 5.410439 GCAATGCAAAGATTCCTGTGAAATT 59.590 36.000 0.00 0.00 33.32 1.82
8225 11646 2.794350 CTGTGAAATTTGTGCCGGTTTC 59.206 45.455 1.90 4.58 0.00 2.78
8229 11650 0.033366 AATTTGTGCCGGTTTCCAGC 59.967 50.000 1.90 0.00 0.00 4.85
8246 11667 7.878036 GTTTCCAGCAAACCTATTGTTACTAA 58.122 34.615 0.00 0.00 38.86 2.24
8248 11669 7.859325 TCCAGCAAACCTATTGTTACTAATC 57.141 36.000 0.00 0.00 35.67 1.75
8250 11671 7.885922 TCCAGCAAACCTATTGTTACTAATCAA 59.114 33.333 0.00 0.00 35.67 2.57
8255 11676 9.010029 CAAACCTATTGTTACTAATCAACACCT 57.990 33.333 0.00 0.00 35.67 4.00
8256 11677 8.561738 AACCTATTGTTACTAATCAACACCTG 57.438 34.615 0.00 0.00 35.70 4.00
8257 11678 7.913789 ACCTATTGTTACTAATCAACACCTGA 58.086 34.615 0.00 0.00 35.70 3.86
8258 11679 8.380099 ACCTATTGTTACTAATCAACACCTGAA 58.620 33.333 0.00 0.00 37.67 3.02
8259 11680 9.226606 CCTATTGTTACTAATCAACACCTGAAA 57.773 33.333 0.00 0.00 37.67 2.69
8262 11683 8.458573 TTGTTACTAATCAACACCTGAAATGT 57.541 30.769 0.00 0.00 37.67 2.71
8263 11684 7.870826 TGTTACTAATCAACACCTGAAATGTG 58.129 34.615 0.00 0.00 37.67 3.21
8267 11688 6.772716 ACTAATCAACACCTGAAATGTGAAGT 59.227 34.615 0.00 0.00 37.67 3.01
8272 11693 2.880268 CACCTGAAATGTGAAGTGCTCA 59.120 45.455 0.00 0.00 34.07 4.26
8276 11697 2.291465 TGAAATGTGAAGTGCTCAGTGC 59.709 45.455 0.00 0.00 43.25 4.40
8291 11712 1.188219 AGTGCTCTGGGCGAGAAAGA 61.188 55.000 0.00 0.00 45.43 2.52
8301 11722 3.087638 CGAGAAAGAGACGTCGCAA 57.912 52.632 21.54 0.00 0.00 4.85
8302 11723 0.703466 CGAGAAAGAGACGTCGCAAC 59.297 55.000 21.54 11.38 0.00 4.17
8453 11875 3.735704 TGGAAATCCAAACTCGCCA 57.264 47.368 0.00 0.00 44.35 5.69
8454 11876 2.214376 TGGAAATCCAAACTCGCCAT 57.786 45.000 0.00 0.00 44.35 4.40
8466 11888 0.383231 CTCGCCATCATTTTCCCTGC 59.617 55.000 0.00 0.00 0.00 4.85
8478 11905 3.838271 CCCTGCTTCGCTCGCCTA 61.838 66.667 0.00 0.00 0.00 3.93
8538 11965 1.066257 ACGGCGACAAACACGTACT 59.934 52.632 16.62 0.00 37.85 2.73
8552 11979 1.836383 CGTACTCGTATTGTCCTGGC 58.164 55.000 0.00 0.00 0.00 4.85
8553 11980 1.133598 CGTACTCGTATTGTCCTGGCA 59.866 52.381 0.00 0.00 0.00 4.92
8554 11981 2.794981 CGTACTCGTATTGTCCTGGCAG 60.795 54.545 7.75 7.75 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.049543 GCACACAAAGGGTACATACGTTAAA 60.050 40.000 0.00 0.00 0.00 1.52
2 3 4.451774 GCACACAAAGGGTACATACGTTAA 59.548 41.667 0.00 0.00 0.00 2.01
3 4 3.995705 GCACACAAAGGGTACATACGTTA 59.004 43.478 0.00 0.00 0.00 3.18
4 5 2.809696 GCACACAAAGGGTACATACGTT 59.190 45.455 0.00 0.00 0.00 3.99
5 6 2.419667 GCACACAAAGGGTACATACGT 58.580 47.619 0.00 0.00 0.00 3.57
6 7 1.392168 CGCACACAAAGGGTACATACG 59.608 52.381 0.00 0.00 0.00 3.06
7 8 1.735571 CCGCACACAAAGGGTACATAC 59.264 52.381 0.00 0.00 0.00 2.39
8 9 1.946747 GCCGCACACAAAGGGTACATA 60.947 52.381 0.00 0.00 0.00 2.29
9 10 1.241315 GCCGCACACAAAGGGTACAT 61.241 55.000 0.00 0.00 0.00 2.29
10 11 1.894756 GCCGCACACAAAGGGTACA 60.895 57.895 0.00 0.00 0.00 2.90
11 12 2.622962 GGCCGCACACAAAGGGTAC 61.623 63.158 0.00 0.00 0.00 3.34
12 13 2.281900 GGCCGCACACAAAGGGTA 60.282 61.111 0.00 0.00 0.00 3.69
13 14 3.808218 ATGGCCGCACACAAAGGGT 62.808 57.895 0.00 0.00 0.00 4.34
14 15 2.098426 AAATGGCCGCACACAAAGGG 62.098 55.000 0.00 0.00 0.00 3.95
15 16 0.945265 CAAATGGCCGCACACAAAGG 60.945 55.000 0.00 0.00 0.00 3.11
16 17 0.031857 TCAAATGGCCGCACACAAAG 59.968 50.000 0.00 0.00 0.00 2.77
17 18 0.678395 ATCAAATGGCCGCACACAAA 59.322 45.000 0.00 0.00 0.00 2.83
18 19 0.243365 GATCAAATGGCCGCACACAA 59.757 50.000 0.00 0.00 0.00 3.33
19 20 1.882311 GATCAAATGGCCGCACACA 59.118 52.632 0.00 0.00 0.00 3.72
20 21 1.226379 CGATCAAATGGCCGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
21 22 1.673993 ACGATCAAATGGCCGCACA 60.674 52.632 0.00 0.00 0.00 4.57
22 23 1.226379 CACGATCAAATGGCCGCAC 60.226 57.895 0.00 0.00 0.00 5.34
23 24 3.050166 GCACGATCAAATGGCCGCA 62.050 57.895 0.00 0.00 0.00 5.69
24 25 2.278142 GCACGATCAAATGGCCGC 60.278 61.111 0.00 0.00 0.00 6.53
25 26 2.023181 CGCACGATCAAATGGCCG 59.977 61.111 0.00 0.00 0.00 6.13
26 27 2.112198 TCCGCACGATCAAATGGCC 61.112 57.895 0.00 0.00 0.00 5.36
27 28 1.062525 GTCCGCACGATCAAATGGC 59.937 57.895 0.00 0.00 0.00 4.40
28 29 1.086696 AAGTCCGCACGATCAAATGG 58.913 50.000 0.00 0.00 0.00 3.16
29 30 4.335082 TTTAAGTCCGCACGATCAAATG 57.665 40.909 0.00 0.00 0.00 2.32
30 31 5.365403 TTTTTAAGTCCGCACGATCAAAT 57.635 34.783 0.00 0.00 0.00 2.32
31 32 4.815040 TTTTTAAGTCCGCACGATCAAA 57.185 36.364 0.00 0.00 0.00 2.69
51 52 7.093377 TGCATACATCCTGCTTTCCTTATTTTT 60.093 33.333 0.00 0.00 40.34 1.94
52 53 6.380846 TGCATACATCCTGCTTTCCTTATTTT 59.619 34.615 0.00 0.00 40.34 1.82
53 54 5.893255 TGCATACATCCTGCTTTCCTTATTT 59.107 36.000 0.00 0.00 40.34 1.40
54 55 5.448654 TGCATACATCCTGCTTTCCTTATT 58.551 37.500 0.00 0.00 40.34 1.40
55 56 5.052693 TGCATACATCCTGCTTTCCTTAT 57.947 39.130 0.00 0.00 40.34 1.73
56 57 4.454678 CTGCATACATCCTGCTTTCCTTA 58.545 43.478 0.00 0.00 40.34 2.69
57 58 3.285484 CTGCATACATCCTGCTTTCCTT 58.715 45.455 0.00 0.00 40.34 3.36
58 59 2.928334 CTGCATACATCCTGCTTTCCT 58.072 47.619 0.00 0.00 40.34 3.36
59 60 1.336125 GCTGCATACATCCTGCTTTCC 59.664 52.381 0.00 0.00 40.34 3.13
60 61 2.295885 AGCTGCATACATCCTGCTTTC 58.704 47.619 1.02 0.00 40.34 2.62
61 62 2.431954 AGCTGCATACATCCTGCTTT 57.568 45.000 1.02 0.00 40.34 3.51
62 63 2.171237 TGTAGCTGCATACATCCTGCTT 59.829 45.455 0.00 0.00 40.34 3.91
63 64 1.764723 TGTAGCTGCATACATCCTGCT 59.235 47.619 0.00 0.00 40.34 4.24
64 65 2.141517 CTGTAGCTGCATACATCCTGC 58.858 52.381 4.51 0.00 40.10 4.85
65 66 3.465742 ACTGTAGCTGCATACATCCTG 57.534 47.619 4.51 0.00 35.21 3.86
66 67 3.432749 CCAACTGTAGCTGCATACATCCT 60.433 47.826 4.51 0.00 35.21 3.24
67 68 2.874701 CCAACTGTAGCTGCATACATCC 59.125 50.000 4.51 0.00 35.21 3.51
68 69 3.797039 TCCAACTGTAGCTGCATACATC 58.203 45.455 4.51 0.00 35.21 3.06
69 70 3.912496 TCCAACTGTAGCTGCATACAT 57.088 42.857 4.51 0.00 35.21 2.29
70 71 3.534554 CATCCAACTGTAGCTGCATACA 58.465 45.455 4.51 7.05 34.55 2.29
71 72 2.289002 GCATCCAACTGTAGCTGCATAC 59.711 50.000 4.51 2.50 0.00 2.39
72 73 2.564771 GCATCCAACTGTAGCTGCATA 58.435 47.619 4.51 0.00 0.00 3.14
73 74 1.386533 GCATCCAACTGTAGCTGCAT 58.613 50.000 4.51 0.00 0.00 3.96
74 75 0.677731 GGCATCCAACTGTAGCTGCA 60.678 55.000 3.90 3.90 0.00 4.41
75 76 1.709147 CGGCATCCAACTGTAGCTGC 61.709 60.000 0.00 0.00 0.00 5.25
76 77 0.391661 ACGGCATCCAACTGTAGCTG 60.392 55.000 0.00 0.00 37.59 4.24
77 78 0.108138 GACGGCATCCAACTGTAGCT 60.108 55.000 0.00 0.00 0.00 3.32
78 79 2.384203 GACGGCATCCAACTGTAGC 58.616 57.895 0.00 0.00 0.00 3.58
88 89 2.125106 GGACACAGGGACGGCATC 60.125 66.667 0.00 0.00 0.00 3.91
89 90 4.082523 CGGACACAGGGACGGCAT 62.083 66.667 0.00 0.00 0.00 4.40
92 93 4.742201 CTGCGGACACAGGGACGG 62.742 72.222 0.00 0.00 33.85 4.79
93 94 3.680786 TCTGCGGACACAGGGACG 61.681 66.667 0.00 0.00 38.26 4.79
94 95 2.048127 GTCTGCGGACACAGGGAC 60.048 66.667 21.02 0.00 41.75 4.46
95 96 2.203640 AGTCTGCGGACACAGGGA 60.204 61.111 27.02 0.00 44.36 4.20
96 97 2.047844 CAGTCTGCGGACACAGGG 60.048 66.667 27.02 7.57 44.36 4.45
97 98 2.740055 GCAGTCTGCGGACACAGG 60.740 66.667 27.02 14.08 44.36 4.00
121 122 3.849951 CATCCGTCCGGGGACAGG 61.850 72.222 17.43 17.32 44.77 4.00
122 123 4.530857 GCATCCGTCCGGGGACAG 62.531 72.222 17.43 6.70 44.77 3.51
130 131 2.325393 AAATCCTCCCGCATCCGTCC 62.325 60.000 0.00 0.00 0.00 4.79
131 132 0.463833 AAAATCCTCCCGCATCCGTC 60.464 55.000 0.00 0.00 0.00 4.79
132 133 0.034477 AAAAATCCTCCCGCATCCGT 60.034 50.000 0.00 0.00 0.00 4.69
133 134 0.381801 CAAAAATCCTCCCGCATCCG 59.618 55.000 0.00 0.00 0.00 4.18
134 135 1.134946 CACAAAAATCCTCCCGCATCC 59.865 52.381 0.00 0.00 0.00 3.51
135 136 1.134946 CCACAAAAATCCTCCCGCATC 59.865 52.381 0.00 0.00 0.00 3.91
136 137 1.185315 CCACAAAAATCCTCCCGCAT 58.815 50.000 0.00 0.00 0.00 4.73
137 138 0.897863 CCCACAAAAATCCTCCCGCA 60.898 55.000 0.00 0.00 0.00 5.69
138 139 1.890174 CCCACAAAAATCCTCCCGC 59.110 57.895 0.00 0.00 0.00 6.13
139 140 1.604147 GGCCCACAAAAATCCTCCCG 61.604 60.000 0.00 0.00 0.00 5.14
140 141 1.604147 CGGCCCACAAAAATCCTCCC 61.604 60.000 0.00 0.00 0.00 4.30
141 142 1.890174 CGGCCCACAAAAATCCTCC 59.110 57.895 0.00 0.00 0.00 4.30
142 143 1.215382 GCGGCCCACAAAAATCCTC 59.785 57.895 0.00 0.00 0.00 3.71
143 144 2.282783 GGCGGCCCACAAAAATCCT 61.283 57.895 8.12 0.00 0.00 3.24
144 145 2.264480 GGCGGCCCACAAAAATCC 59.736 61.111 8.12 0.00 0.00 3.01
145 146 2.126110 CGGCGGCCCACAAAAATC 60.126 61.111 14.55 0.00 0.00 2.17
146 147 2.503382 AACGGCGGCCCACAAAAAT 61.503 52.632 14.55 0.00 0.00 1.82
147 148 3.148279 AACGGCGGCCCACAAAAA 61.148 55.556 14.55 0.00 0.00 1.94
148 149 3.905678 CAACGGCGGCCCACAAAA 61.906 61.111 14.55 0.00 0.00 2.44
154 155 3.809374 CTATCTCCAACGGCGGCCC 62.809 68.421 14.55 0.00 0.00 5.80
155 156 2.280186 CTATCTCCAACGGCGGCC 60.280 66.667 13.24 9.54 0.00 6.13
156 157 2.967615 GCTATCTCCAACGGCGGC 60.968 66.667 13.24 0.00 0.00 6.53
157 158 1.461091 TAGGCTATCTCCAACGGCGG 61.461 60.000 13.24 0.00 0.00 6.13
158 159 0.387929 TTAGGCTATCTCCAACGGCG 59.612 55.000 4.80 4.80 0.00 6.46
159 160 1.867166 GTTAGGCTATCTCCAACGGC 58.133 55.000 0.00 0.00 0.00 5.68
160 161 1.679680 TCGTTAGGCTATCTCCAACGG 59.320 52.381 15.52 1.23 39.15 4.44
161 162 3.431922 TTCGTTAGGCTATCTCCAACG 57.568 47.619 10.80 10.80 39.57 4.10
162 163 9.141400 CTTATAATTCGTTAGGCTATCTCCAAC 57.859 37.037 0.00 0.00 0.00 3.77
163 164 7.817962 GCTTATAATTCGTTAGGCTATCTCCAA 59.182 37.037 0.00 0.00 0.00 3.53
164 165 7.321153 GCTTATAATTCGTTAGGCTATCTCCA 58.679 38.462 0.00 0.00 0.00 3.86
165 166 6.472808 CGCTTATAATTCGTTAGGCTATCTCC 59.527 42.308 0.00 0.00 0.00 3.71
166 167 7.249147 TCGCTTATAATTCGTTAGGCTATCTC 58.751 38.462 0.00 0.00 0.00 2.75
167 168 7.154435 TCGCTTATAATTCGTTAGGCTATCT 57.846 36.000 0.00 0.00 0.00 1.98
168 169 7.096966 CGATCGCTTATAATTCGTTAGGCTATC 60.097 40.741 0.26 0.00 0.00 2.08
169 170 6.691818 CGATCGCTTATAATTCGTTAGGCTAT 59.308 38.462 0.26 0.00 0.00 2.97
170 171 6.025896 CGATCGCTTATAATTCGTTAGGCTA 58.974 40.000 0.26 0.00 0.00 3.93
171 172 4.857588 CGATCGCTTATAATTCGTTAGGCT 59.142 41.667 0.26 0.00 0.00 4.58
172 173 4.855388 TCGATCGCTTATAATTCGTTAGGC 59.145 41.667 11.09 0.00 0.00 3.93
173 174 6.312487 TCTCGATCGCTTATAATTCGTTAGG 58.688 40.000 11.09 0.00 0.00 2.69
174 175 7.235080 TCTCTCGATCGCTTATAATTCGTTAG 58.765 38.462 11.09 0.00 0.00 2.34
175 176 7.125536 TCTCTCGATCGCTTATAATTCGTTA 57.874 36.000 11.09 0.00 0.00 3.18
176 177 5.998553 TCTCTCGATCGCTTATAATTCGTT 58.001 37.500 11.09 0.71 0.00 3.85
177 178 5.608676 TCTCTCGATCGCTTATAATTCGT 57.391 39.130 11.09 0.00 0.00 3.85
178 179 6.251549 TCATCTCTCGATCGCTTATAATTCG 58.748 40.000 11.09 2.05 0.00 3.34
179 180 8.627487 AATCATCTCTCGATCGCTTATAATTC 57.373 34.615 11.09 0.00 0.00 2.17
180 181 8.994429 AAATCATCTCTCGATCGCTTATAATT 57.006 30.769 11.09 2.22 0.00 1.40
181 182 8.994429 AAAATCATCTCTCGATCGCTTATAAT 57.006 30.769 11.09 0.00 0.00 1.28
182 183 8.818141 AAAAATCATCTCTCGATCGCTTATAA 57.182 30.769 11.09 0.00 0.00 0.98
510 511 5.235831 ACATCATCACATAGCATCTGTTTCG 59.764 40.000 0.00 0.00 0.00 3.46
516 517 7.536159 TCTCTAACATCATCACATAGCATCT 57.464 36.000 0.00 0.00 0.00 2.90
526 527 6.408869 TGTCAAAGCATCTCTAACATCATCA 58.591 36.000 0.00 0.00 0.00 3.07
527 528 6.915544 TGTCAAAGCATCTCTAACATCATC 57.084 37.500 0.00 0.00 0.00 2.92
529 530 6.175471 ACATGTCAAAGCATCTCTAACATCA 58.825 36.000 0.00 0.00 0.00 3.07
567 568 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
568 569 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
570 571 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
572 573 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
574 575 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
575 576 8.970691 AAAATTGAGTCATCTATTTTGGAACG 57.029 30.769 11.47 0.00 44.08 3.95
612 613 9.310716 GACTCAACTTTGTACTAACTTTGTACT 57.689 33.333 12.73 0.00 40.44 2.73
613 614 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
614 615 9.826574 ATGACTCAACTTTGTACTAACTTTGTA 57.173 29.630 0.00 0.00 0.00 2.41
615 616 8.732746 ATGACTCAACTTTGTACTAACTTTGT 57.267 30.769 0.00 0.00 0.00 2.83
616 617 9.046296 AGATGACTCAACTTTGTACTAACTTTG 57.954 33.333 0.00 0.00 0.00 2.77
623 624 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
624 625 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
625 626 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
626 627 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
627 628 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
628 629 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
629 630 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
630 631 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
631 632 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
632 633 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
633 634 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
634 635 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
635 636 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
636 637 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
637 638 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
638 639 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
639 640 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
640 641 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
641 642 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
642 643 5.433526 CAATACTCCCTCCGTTCCAAAATA 58.566 41.667 0.00 0.00 0.00 1.40
643 644 4.270008 CAATACTCCCTCCGTTCCAAAAT 58.730 43.478 0.00 0.00 0.00 1.82
644 645 3.681593 CAATACTCCCTCCGTTCCAAAA 58.318 45.455 0.00 0.00 0.00 2.44
645 646 2.617021 GCAATACTCCCTCCGTTCCAAA 60.617 50.000 0.00 0.00 0.00 3.28
646 647 1.065709 GCAATACTCCCTCCGTTCCAA 60.066 52.381 0.00 0.00 0.00 3.53
647 648 0.539986 GCAATACTCCCTCCGTTCCA 59.460 55.000 0.00 0.00 0.00 3.53
648 649 0.831307 AGCAATACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
649 650 2.693267 AAGCAATACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
650 651 5.046520 GGATATAAGCAATACTCCCTCCGTT 60.047 44.000 0.00 0.00 0.00 4.44
651 652 4.466726 GGATATAAGCAATACTCCCTCCGT 59.533 45.833 0.00 0.00 0.00 4.69
652 653 4.466370 TGGATATAAGCAATACTCCCTCCG 59.534 45.833 0.00 0.00 0.00 4.63
653 654 5.627968 GCTGGATATAAGCAATACTCCCTCC 60.628 48.000 5.24 0.00 40.52 4.30
654 655 5.423886 GCTGGATATAAGCAATACTCCCTC 58.576 45.833 5.24 0.00 40.52 4.30
655 656 4.226168 GGCTGGATATAAGCAATACTCCCT 59.774 45.833 11.03 0.00 42.69 4.20
656 657 4.019321 TGGCTGGATATAAGCAATACTCCC 60.019 45.833 11.03 0.00 42.69 4.30
657 658 5.046304 TCTGGCTGGATATAAGCAATACTCC 60.046 44.000 11.03 0.00 42.69 3.85
658 659 6.042638 TCTGGCTGGATATAAGCAATACTC 57.957 41.667 11.03 0.00 42.69 2.59
659 660 6.270927 TCTTCTGGCTGGATATAAGCAATACT 59.729 38.462 11.03 0.00 42.69 2.12
660 661 6.467677 TCTTCTGGCTGGATATAAGCAATAC 58.532 40.000 11.03 0.00 42.69 1.89
661 662 6.686484 TCTTCTGGCTGGATATAAGCAATA 57.314 37.500 11.03 0.00 42.69 1.90
662 663 5.573380 TCTTCTGGCTGGATATAAGCAAT 57.427 39.130 11.03 0.00 42.69 3.56
663 664 5.072193 TCATCTTCTGGCTGGATATAAGCAA 59.928 40.000 11.03 0.47 42.69 3.91
664 665 4.594491 TCATCTTCTGGCTGGATATAAGCA 59.406 41.667 11.03 0.00 42.69 3.91
665 666 5.157940 TCATCTTCTGGCTGGATATAAGC 57.842 43.478 1.93 1.93 40.06 3.09
666 667 6.654161 CCTTTCATCTTCTGGCTGGATATAAG 59.346 42.308 0.00 0.00 0.00 1.73
667 668 6.466326 CCCTTTCATCTTCTGGCTGGATATAA 60.466 42.308 0.00 0.00 0.00 0.98
668 669 5.013495 CCCTTTCATCTTCTGGCTGGATATA 59.987 44.000 0.00 0.00 0.00 0.86
669 670 4.202545 CCCTTTCATCTTCTGGCTGGATAT 60.203 45.833 0.00 0.00 0.00 1.63
670 671 3.137176 CCCTTTCATCTTCTGGCTGGATA 59.863 47.826 0.00 0.00 0.00 2.59
671 672 2.091994 CCCTTTCATCTTCTGGCTGGAT 60.092 50.000 0.00 0.00 0.00 3.41
672 673 1.283029 CCCTTTCATCTTCTGGCTGGA 59.717 52.381 0.00 0.00 0.00 3.86
673 674 1.005215 ACCCTTTCATCTTCTGGCTGG 59.995 52.381 0.00 0.00 0.00 4.85
674 675 2.363683 GACCCTTTCATCTTCTGGCTG 58.636 52.381 0.00 0.00 0.00 4.85
675 676 1.065854 CGACCCTTTCATCTTCTGGCT 60.066 52.381 0.00 0.00 0.00 4.75
676 677 1.066143 TCGACCCTTTCATCTTCTGGC 60.066 52.381 0.00 0.00 0.00 4.85
677 678 3.334583 TTCGACCCTTTCATCTTCTGG 57.665 47.619 0.00 0.00 0.00 3.86
678 679 4.569966 CAGATTCGACCCTTTCATCTTCTG 59.430 45.833 0.00 0.00 0.00 3.02
679 680 4.467795 TCAGATTCGACCCTTTCATCTTCT 59.532 41.667 0.00 0.00 0.00 2.85
680 681 4.759782 TCAGATTCGACCCTTTCATCTTC 58.240 43.478 0.00 0.00 0.00 2.87
701 702 4.464112 GCACGTTCTTATTTGTGTCCTTC 58.536 43.478 0.00 0.00 34.86 3.46
702 703 3.252458 GGCACGTTCTTATTTGTGTCCTT 59.748 43.478 0.00 0.00 34.86 3.36
704 705 3.197434 GGCACGTTCTTATTTGTGTCC 57.803 47.619 0.00 0.00 34.86 4.02
705 706 2.550606 TGGGCACGTTCTTATTTGTGTC 59.449 45.455 0.00 0.00 36.26 3.67
706 707 2.577700 TGGGCACGTTCTTATTTGTGT 58.422 42.857 0.00 0.00 34.86 3.72
713 714 2.223618 GCAGTTTTTGGGCACGTTCTTA 60.224 45.455 0.00 0.00 0.00 2.10
778 3845 3.118371 GGCTTGGCTAGGTGTAATAGTGT 60.118 47.826 0.00 0.00 0.00 3.55
780 3847 3.112263 TGGCTTGGCTAGGTGTAATAGT 58.888 45.455 0.00 0.00 0.00 2.12
827 3894 3.860681 GGGGGACGCGGAAGTATA 58.139 61.111 12.47 0.00 0.00 1.47
902 3972 2.821366 GTCGTCGAGGTAGGCGGA 60.821 66.667 4.85 0.00 40.01 5.54
992 4062 1.379443 TAGTCCTCCATGACCGCGT 60.379 57.895 4.92 0.00 35.83 6.01
993 4063 1.065928 GTAGTCCTCCATGACCGCG 59.934 63.158 0.00 0.00 35.83 6.46
994 4064 1.442148 GGTAGTCCTCCATGACCGC 59.558 63.158 0.00 0.00 35.83 5.68
995 4065 1.735376 CGGGTAGTCCTCCATGACCG 61.735 65.000 0.00 0.00 35.83 4.79
996 4066 1.400530 CCGGGTAGTCCTCCATGACC 61.401 65.000 0.00 0.00 35.83 4.02
997 4067 0.396695 TCCGGGTAGTCCTCCATGAC 60.397 60.000 0.00 0.00 35.43 3.06
998 4068 0.106167 CTCCGGGTAGTCCTCCATGA 60.106 60.000 0.00 0.00 0.00 3.07
1355 4425 5.103982 TGGGATCAATGCTAAAGGATGAAGA 60.104 40.000 0.00 0.00 0.00 2.87
1421 4491 6.193514 TGAAAAGATTGCTCATTCGCATTA 57.806 33.333 0.00 0.00 40.04 1.90
1450 4520 3.007635 GTCCAACAAGTTCCTAATCCCG 58.992 50.000 0.00 0.00 0.00 5.14
1702 4772 0.613260 TGTGAGTAGGCACATGTCCC 59.387 55.000 0.00 0.00 43.35 4.46
1738 4808 4.947388 GGTTTGACCCACTAATATCAAGCA 59.053 41.667 0.00 0.00 34.91 3.91
2260 5330 2.429478 CGGTCTGGTCCGGTTTTTAAT 58.571 47.619 0.00 0.00 45.88 1.40
2455 5525 1.368345 CTGCGTTCGAATCCCATGCA 61.368 55.000 0.00 0.35 0.00 3.96
2620 5691 1.069513 ACCAGTTCGATTGTCGGTTCA 59.930 47.619 0.00 0.00 40.88 3.18
2672 5745 0.396435 TCAAACCATGAGTCTGGCGT 59.604 50.000 0.00 0.00 40.15 5.68
2684 5757 4.042062 AGAACCAGACTGATGATCAAACCA 59.958 41.667 3.32 0.00 0.00 3.67
2695 5768 9.475620 TCATAATCTAAGTAAGAACCAGACTGA 57.524 33.333 3.32 0.00 37.89 3.41
2760 5833 6.857964 CACATGTTCTGGTTAACAATCAAGTC 59.142 38.462 8.10 0.00 42.33 3.01
2772 5845 7.729116 AGAAAATTCATTCACATGTTCTGGTT 58.271 30.769 0.00 0.00 0.00 3.67
2934 6008 3.873910 TCAGTTTAAGGCATAGGACTGC 58.126 45.455 9.23 0.00 41.53 4.40
2950 6024 6.054860 ACTGTTGACAAGGCTATATCAGTT 57.945 37.500 0.00 0.00 31.02 3.16
3167 6242 6.594937 ACGAAGTGTTGTTTGGACTACTTTTA 59.405 34.615 0.00 0.00 42.51 1.52
3502 6577 3.056607 ACCATTCCCAATGAAGAAAAGCG 60.057 43.478 0.00 0.00 41.46 4.68
3669 6744 6.288294 ACAGTGCTGTGTACAGAAGATTTAA 58.712 36.000 15.78 0.00 46.59 1.52
3693 6768 8.514594 CAGTAAAAGAAATGTGGCTCTCAATTA 58.485 33.333 0.00 0.00 0.00 1.40
3801 6876 0.035439 GATTTGCCCTTGACGGAGGA 60.035 55.000 3.60 0.00 39.25 3.71
3805 6880 1.743394 GGTAAGATTTGCCCTTGACGG 59.257 52.381 0.00 0.00 0.00 4.79
3981 7056 0.953727 GGCTGCAATCACAGTGTGAA 59.046 50.000 28.70 12.25 45.96 3.18
4336 7411 3.119101 ACACTGCCAGAGAATAACGGTAG 60.119 47.826 0.00 0.00 37.29 3.18
4723 7798 8.553459 ACATCTGAATTCAACGTAGAAGAATT 57.447 30.769 9.88 14.19 42.99 2.17
4819 7894 8.312669 ACTGCTAAGAGAGTACCTGATTTAAT 57.687 34.615 0.00 0.00 0.00 1.40
4935 8089 2.683968 TCTCGCCATCTGTGTTTGTAC 58.316 47.619 0.00 0.00 0.00 2.90
5161 8315 1.337354 TGCTTGACCGCGAATTAGTCA 60.337 47.619 8.23 9.66 38.70 3.41
5368 8527 0.181587 CGGTTGGTACATATGGGGCA 59.818 55.000 7.80 0.00 39.30 5.36
5375 8735 2.094390 GCAGACTGACGGTTGGTACATA 60.094 50.000 6.65 0.00 39.30 2.29
5425 8789 1.380246 GGATGGGACAATGCCAGCA 60.380 57.895 6.94 0.00 46.61 4.41
5436 8800 0.253160 AGCTTAGTGGTGGGATGGGA 60.253 55.000 0.00 0.00 0.00 4.37
5600 8964 2.203832 TCTGCTCTCCACCAGGCA 60.204 61.111 0.00 0.00 33.74 4.75
5697 9063 4.323417 CAACTGCCACACACCTTTATCTA 58.677 43.478 0.00 0.00 0.00 1.98
5760 9126 8.487176 GTTGTTTATTTGCCAAGTTATGTGAAG 58.513 33.333 0.00 0.00 0.00 3.02
5872 9238 0.811281 GCCAACTAGCCCACACAATC 59.189 55.000 0.00 0.00 0.00 2.67
5927 9293 3.354948 TGGCTGTGCTCTTTGTATCAT 57.645 42.857 0.00 0.00 0.00 2.45
6047 9413 5.649831 AGAAGAAAGCTTGATATTCCCACAC 59.350 40.000 0.00 0.00 33.61 3.82
6249 9615 1.073125 TCCTCAAATTTCCACAGCGGA 59.927 47.619 0.00 0.00 44.40 5.54
6325 9691 3.006859 TCTGGCTCTTCGACTTGAATCAA 59.993 43.478 0.00 0.00 35.63 2.57
6644 10010 0.392461 GGAATCACCCGCAACTAGCA 60.392 55.000 0.00 0.00 46.13 3.49
6646 10012 1.656652 CAGGAATCACCCGCAACTAG 58.343 55.000 0.00 0.00 40.05 2.57
7021 10387 0.523072 CCGCTGATTTGTTCCACTGG 59.477 55.000 0.00 0.00 0.00 4.00
7059 10425 0.671781 CTGCGCTAGGAGCAACAACT 60.672 55.000 9.73 0.00 44.67 3.16
7086 10452 6.044682 CCTTGGATTGACTGAAAATATTGCC 58.955 40.000 0.00 0.00 0.00 4.52
7191 10557 2.156891 TCTTTGCTTCATCGTAACACGC 59.843 45.455 0.00 0.00 42.21 5.34
7200 10566 3.561725 CCTCGGGTAATCTTTGCTTCATC 59.438 47.826 0.00 0.00 0.00 2.92
7257 10623 2.219449 TAGCGTAGGGAGGGCACTCA 62.219 60.000 19.73 0.00 45.81 3.41
7386 10752 1.175654 TGAATGCGGCATGATTGTGT 58.824 45.000 17.43 0.00 0.00 3.72
7485 10851 3.087781 AGAGTACCTCACCGAAGTTACC 58.912 50.000 0.00 0.00 32.06 2.85
7628 10994 1.410083 GGCATAAGGAGTGGATTGCCA 60.410 52.381 6.86 0.00 46.87 4.92
7660 11026 2.048222 CGGCGTTCCTCTGCTTGA 60.048 61.111 0.00 0.00 0.00 3.02
7690 11066 4.764172 GTGAGACTGAATCACCAATAGCT 58.236 43.478 0.00 0.00 40.99 3.32
7721 11097 0.586319 TTTCGCTTCAAGCCTGTTCG 59.414 50.000 3.08 0.00 38.18 3.95
7749 11125 0.737715 GTGCCGATCACCACTCTGAC 60.738 60.000 5.69 0.00 39.79 3.51
7829 11205 9.712305 AGTATAATCACAAGTTACAGGCATATC 57.288 33.333 0.00 0.00 0.00 1.63
8011 11393 7.254227 TGTCAGTATGGTTAAACACAAGTTC 57.746 36.000 0.00 0.00 34.55 3.01
8038 11420 3.565905 ATGAAAGTTTGTAGCAGCAGC 57.434 42.857 0.00 0.00 42.56 5.25
8051 11438 3.394606 AGGACAACACTGGGTATGAAAGT 59.605 43.478 0.00 0.00 0.00 2.66
8060 11447 4.065789 GAGAAACTAAGGACAACACTGGG 58.934 47.826 0.00 0.00 0.00 4.45
8069 11456 4.750598 ACGCTGAAAAGAGAAACTAAGGAC 59.249 41.667 0.00 0.00 0.00 3.85
8071 11458 6.780706 TTACGCTGAAAAGAGAAACTAAGG 57.219 37.500 0.00 0.00 0.00 2.69
8103 11490 6.016610 TGCGACAAAAATAGGAGTAAAAAGCT 60.017 34.615 0.00 0.00 0.00 3.74
8116 11503 8.873215 TTTTACTGGAAATTGCGACAAAAATA 57.127 26.923 0.00 0.00 0.00 1.40
8117 11504 7.708752 TCTTTTACTGGAAATTGCGACAAAAAT 59.291 29.630 0.00 0.00 0.00 1.82
8118 11505 7.036220 TCTTTTACTGGAAATTGCGACAAAAA 58.964 30.769 0.00 0.00 0.00 1.94
8120 11507 6.137794 TCTTTTACTGGAAATTGCGACAAA 57.862 33.333 0.00 0.00 0.00 2.83
8123 11510 6.089417 CCATTTCTTTTACTGGAAATTGCGAC 59.911 38.462 0.00 0.00 39.29 5.19
8125 11512 5.925969 ACCATTTCTTTTACTGGAAATTGCG 59.074 36.000 0.00 0.00 39.29 4.85
8126 11513 6.705825 ACACCATTTCTTTTACTGGAAATTGC 59.294 34.615 0.00 0.00 39.29 3.56
8128 11515 8.017418 TCACACCATTTCTTTTACTGGAAATT 57.983 30.769 0.00 0.00 39.29 1.82
8129 11516 7.595819 TCACACCATTTCTTTTACTGGAAAT 57.404 32.000 0.00 0.00 41.15 2.17
8130 11517 7.505585 AGATCACACCATTTCTTTTACTGGAAA 59.494 33.333 0.00 0.00 36.17 3.13
8131 11518 7.004086 AGATCACACCATTTCTTTTACTGGAA 58.996 34.615 0.00 0.00 32.92 3.53
8133 11520 6.127897 GGAGATCACACCATTTCTTTTACTGG 60.128 42.308 0.00 0.00 34.84 4.00
8134 11521 6.430925 TGGAGATCACACCATTTCTTTTACTG 59.569 38.462 0.00 0.00 32.20 2.74
8135 11522 6.542821 TGGAGATCACACCATTTCTTTTACT 58.457 36.000 0.00 0.00 32.20 2.24
8136 11523 6.431234 ACTGGAGATCACACCATTTCTTTTAC 59.569 38.462 0.00 0.00 36.30 2.01
8137 11524 6.542821 ACTGGAGATCACACCATTTCTTTTA 58.457 36.000 0.00 0.00 36.30 1.52
8139 11526 4.990526 ACTGGAGATCACACCATTTCTTT 58.009 39.130 0.00 0.00 36.30 2.52
8140 11527 4.647564 ACTGGAGATCACACCATTTCTT 57.352 40.909 0.00 0.00 36.30 2.52
8141 11528 5.762179 TTACTGGAGATCACACCATTTCT 57.238 39.130 0.00 0.00 36.30 2.52
8149 11537 6.374333 GGCAGTAAAAATTACTGGAGATCACA 59.626 38.462 24.07 0.00 43.68 3.58
8151 11539 6.721318 AGGCAGTAAAAATTACTGGAGATCA 58.279 36.000 24.07 0.00 43.68 2.92
8152 11540 7.631717 AAGGCAGTAAAAATTACTGGAGATC 57.368 36.000 24.07 11.89 43.68 2.75
8155 11543 6.148811 TCGAAAGGCAGTAAAAATTACTGGAG 59.851 38.462 24.07 6.94 43.68 3.86
8178 11566 1.089112 TTGCATTGCAGATGAGGTCG 58.911 50.000 11.76 0.00 40.61 4.79
8179 11567 2.751259 TCTTTGCATTGCAGATGAGGTC 59.249 45.455 11.76 0.00 40.61 3.85
8180 11568 2.799017 TCTTTGCATTGCAGATGAGGT 58.201 42.857 11.76 0.00 40.61 3.85
8181 11569 4.360563 GAATCTTTGCATTGCAGATGAGG 58.639 43.478 11.76 0.00 40.61 3.86
8183 11571 4.021229 AGGAATCTTTGCATTGCAGATGA 58.979 39.130 11.76 11.27 40.61 2.92
8185 11573 3.767673 ACAGGAATCTTTGCATTGCAGAT 59.232 39.130 11.76 9.29 40.61 2.90
8186 11574 3.057104 CACAGGAATCTTTGCATTGCAGA 60.057 43.478 11.76 6.56 40.61 4.26
8187 11575 3.057104 TCACAGGAATCTTTGCATTGCAG 60.057 43.478 11.76 1.32 40.61 4.41
8189 11577 3.581024 TCACAGGAATCTTTGCATTGC 57.419 42.857 0.46 0.46 0.00 3.56
8190 11578 7.041644 ACAAATTTCACAGGAATCTTTGCATTG 60.042 33.333 0.00 0.00 38.40 2.82
8191 11579 6.993902 ACAAATTTCACAGGAATCTTTGCATT 59.006 30.769 0.00 0.00 38.40 3.56
8193 11581 5.754406 CACAAATTTCACAGGAATCTTTGCA 59.246 36.000 0.00 0.00 38.40 4.08
8194 11582 5.333568 GCACAAATTTCACAGGAATCTTTGC 60.334 40.000 0.00 0.00 38.40 3.68
8195 11583 5.178067 GGCACAAATTTCACAGGAATCTTTG 59.822 40.000 0.00 0.00 39.48 2.77
8196 11584 5.299949 GGCACAAATTTCACAGGAATCTTT 58.700 37.500 0.00 0.00 31.93 2.52
8203 11591 0.673437 ACCGGCACAAATTTCACAGG 59.327 50.000 0.00 0.00 0.00 4.00
8204 11592 2.507339 AACCGGCACAAATTTCACAG 57.493 45.000 0.00 0.00 0.00 3.66
8205 11593 2.482142 GGAAACCGGCACAAATTTCACA 60.482 45.455 0.00 0.00 33.58 3.58
8209 11630 2.524569 CTGGAAACCGGCACAAATTT 57.475 45.000 0.00 0.00 0.00 1.82
8225 11646 7.624360 TGATTAGTAACAATAGGTTTGCTGG 57.376 36.000 0.00 0.00 40.96 4.85
8229 11650 9.010029 AGGTGTTGATTAGTAACAATAGGTTTG 57.990 33.333 0.00 0.00 39.50 2.93
8237 11658 8.349245 CACATTTCAGGTGTTGATTAGTAACAA 58.651 33.333 0.00 0.00 39.50 2.83
8240 11661 8.684386 TTCACATTTCAGGTGTTGATTAGTAA 57.316 30.769 0.00 0.00 37.52 2.24
8246 11667 4.261741 GCACTTCACATTTCAGGTGTTGAT 60.262 41.667 0.00 0.00 37.52 2.57
8248 11669 3.067180 AGCACTTCACATTTCAGGTGTTG 59.933 43.478 0.00 0.00 37.52 3.33
8250 11671 2.880890 GAGCACTTCACATTTCAGGTGT 59.119 45.455 0.00 0.00 37.52 4.16
8255 11676 2.291465 GCACTGAGCACTTCACATTTCA 59.709 45.455 0.00 0.00 44.79 2.69
8256 11677 2.926165 GCACTGAGCACTTCACATTTC 58.074 47.619 0.00 0.00 44.79 2.17
8267 11688 4.383861 CGCCCAGAGCACTGAGCA 62.384 66.667 17.07 0.00 45.92 4.26
8272 11693 1.188219 TCTTTCTCGCCCAGAGCACT 61.188 55.000 0.00 0.00 46.44 4.40
8389 11811 1.373570 GGCGAGAGAGATTGTTTGGG 58.626 55.000 0.00 0.00 0.00 4.12
8478 11905 2.837591 GGGATTGGTTGGGTTTAATGCT 59.162 45.455 0.00 0.00 0.00 3.79
8481 11908 4.037222 GGATGGGATTGGTTGGGTTTAAT 58.963 43.478 0.00 0.00 0.00 1.40
8538 11965 0.249120 CCACTGCCAGGACAATACGA 59.751 55.000 0.00 0.00 0.00 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.