Multiple sequence alignment - TraesCS6A01G278900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G278900 chr6A 100.000 2402 0 0 1 2402 506506703 506509104 0.000000e+00 4436
1 TraesCS6A01G278900 chr6A 85.556 720 84 13 691 1402 506489967 506490674 0.000000e+00 736
2 TraesCS6A01G278900 chr6A 84.722 720 91 13 691 1403 506485508 506486215 0.000000e+00 702
3 TraesCS6A01G278900 chr6A 83.824 680 66 18 1 669 506489326 506489972 7.340000e-170 606
4 TraesCS6A01G278900 chr6A 86.047 258 32 4 1466 1720 481347640 481347896 8.460000e-70 274
5 TraesCS6A01G278900 chr6B 88.679 795 68 11 691 1474 550273272 550274055 0.000000e+00 950
6 TraesCS6A01G278900 chr6B 86.288 722 77 16 691 1403 550211346 550212054 0.000000e+00 765
7 TraesCS6A01G278900 chr6B 94.248 452 25 1 1951 2402 30289360 30289810 0.000000e+00 689
8 TraesCS6A01G278900 chr6B 84.160 726 87 15 691 1402 550270070 550270781 0.000000e+00 678
9 TraesCS6A01G278900 chr6B 83.734 707 90 19 715 1403 659588843 659589542 0.000000e+00 645
10 TraesCS6A01G278900 chr6B 79.403 670 78 25 37 669 550272631 550273277 3.690000e-113 418
11 TraesCS6A01G278900 chr6B 90.110 273 24 2 1 273 550269428 550269697 3.800000e-93 351
12 TraesCS6A01G278900 chr6B 85.652 230 30 2 312 540 550269685 550269912 3.090000e-59 239
13 TraesCS6A01G278900 chr6B 82.308 130 12 4 543 669 550269954 550270075 4.220000e-18 102
14 TraesCS6A01G278900 chr6D 85.278 720 85 16 691 1403 365449394 365450099 0.000000e+00 723
15 TraesCS6A01G278900 chr6D 84.795 730 77 21 691 1403 365596547 365597259 0.000000e+00 702
16 TraesCS6A01G278900 chr6D 82.763 731 104 15 691 1410 436344177 436344896 1.210000e-177 632
17 TraesCS6A01G278900 chr6D 82.414 671 78 18 1 669 365599878 365600510 1.260000e-152 549
18 TraesCS6A01G278900 chr6D 83.137 593 60 17 68 659 365458361 365458914 2.760000e-139 505
19 TraesCS6A01G278900 chr6D 84.597 422 40 11 263 669 365596141 365596552 1.730000e-106 396
20 TraesCS6A01G278900 chr6D 90.000 160 14 1 120 279 365711358 365711515 3.130000e-49 206
21 TraesCS6A01G278900 chr6D 93.077 130 8 1 5 133 365595042 365595171 3.150000e-44 189
22 TraesCS6A01G278900 chr6D 86.826 167 21 1 1 167 365711192 365711357 4.080000e-43 185
23 TraesCS6A01G278900 chr2D 94.923 453 21 2 1951 2402 639930926 639930475 0.000000e+00 708
24 TraesCS6A01G278900 chr2D 85.827 127 11 5 1826 1949 129960167 129960289 6.970000e-26 128
25 TraesCS6A01G278900 chr5B 94.248 452 26 0 1951 2402 701685086 701684635 0.000000e+00 691
26 TraesCS6A01G278900 chr5B 94.248 452 25 1 1951 2402 701661648 701661198 0.000000e+00 689
27 TraesCS6A01G278900 chr5B 94.027 452 27 0 1951 2402 701644263 701643812 0.000000e+00 686
28 TraesCS6A01G278900 chr5B 93.805 452 27 1 1951 2402 701734290 701733840 0.000000e+00 678
29 TraesCS6A01G278900 chr3D 94.357 443 25 0 1960 2402 608923563 608923121 0.000000e+00 680
30 TraesCS6A01G278900 chr3D 93.792 451 28 0 1952 2402 300120298 300119848 0.000000e+00 678
31 TraesCS6A01G278900 chr3D 84.058 138 16 5 1814 1949 109550177 109550044 6.970000e-26 128
32 TraesCS6A01G278900 chr3B 94.000 450 26 1 1953 2402 141743334 141742886 0.000000e+00 680
33 TraesCS6A01G278900 chr3B 87.805 246 29 1 1469 1713 466817061 466816816 1.090000e-73 287
34 TraesCS6A01G278900 chr3B 85.600 125 14 3 1827 1949 507505717 507505595 6.970000e-26 128
35 TraesCS6A01G278900 chr4A 89.212 241 21 5 1477 1714 688585443 688585681 1.810000e-76 296
36 TraesCS6A01G278900 chr1D 88.703 239 24 3 1477 1713 488546678 488546915 3.020000e-74 289
37 TraesCS6A01G278900 chr1D 86.777 121 12 3 1831 1949 279096009 279095891 5.390000e-27 132
38 TraesCS6A01G278900 chr4B 87.805 246 29 1 1469 1713 378140974 378140729 1.090000e-73 287
39 TraesCS6A01G278900 chr4B 87.200 250 30 2 1469 1717 198764363 198764115 1.410000e-72 283
40 TraesCS6A01G278900 chr2B 87.805 246 29 1 1469 1713 638174747 638174992 1.090000e-73 287
41 TraesCS6A01G278900 chr1B 87.805 246 29 1 1469 1713 609523555 609523800 1.090000e-73 287
42 TraesCS6A01G278900 chr7D 88.017 242 28 1 1473 1713 176959310 176959069 3.910000e-73 285
43 TraesCS6A01G278900 chr7D 83.459 133 17 4 1814 1944 620139111 620138982 4.190000e-23 119
44 TraesCS6A01G278900 chrUn 81.250 352 47 11 691 1031 7335198 7335541 1.420000e-67 267
45 TraesCS6A01G278900 chr7B 90.291 103 7 2 1829 1929 502893562 502893663 5.390000e-27 132
46 TraesCS6A01G278900 chr5D 86.179 123 13 4 1829 1949 386860582 386860702 1.940000e-26 130
47 TraesCS6A01G278900 chr5A 86.179 123 13 4 1829 1949 488629121 488629241 1.940000e-26 130
48 TraesCS6A01G278900 chr5A 85.600 125 14 3 1827 1949 428962864 428962742 6.970000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G278900 chr6A 506506703 506509104 2401 False 4436.000000 4436 100.000000 1 2402 1 chr6A.!!$F2 2401
1 TraesCS6A01G278900 chr6A 506485508 506490674 5166 False 681.333333 736 84.700667 1 1403 3 chr6A.!!$F3 1402
2 TraesCS6A01G278900 chr6B 550211346 550212054 708 False 765.000000 765 86.288000 691 1403 1 chr6B.!!$F2 712
3 TraesCS6A01G278900 chr6B 659588843 659589542 699 False 645.000000 645 83.734000 715 1403 1 chr6B.!!$F3 688
4 TraesCS6A01G278900 chr6B 550269428 550274055 4627 False 456.333333 950 85.052000 1 1474 6 chr6B.!!$F4 1473
5 TraesCS6A01G278900 chr6D 365449394 365450099 705 False 723.000000 723 85.278000 691 1403 1 chr6D.!!$F1 712
6 TraesCS6A01G278900 chr6D 436344177 436344896 719 False 632.000000 632 82.763000 691 1410 1 chr6D.!!$F3 719
7 TraesCS6A01G278900 chr6D 365458361 365458914 553 False 505.000000 505 83.137000 68 659 1 chr6D.!!$F2 591
8 TraesCS6A01G278900 chr6D 365595042 365600510 5468 False 459.000000 702 86.220750 1 1403 4 chr6D.!!$F4 1402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 1312 0.031314 CACGTCTAGCATGCGAGGAT 59.969 55.0 25.04 10.13 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 11711 0.037232 GACGACAAGCCTGGTAAGCT 60.037 55.0 0.0 0.0 44.19 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.974236 CTTAGATCTGCCCCCTACCTG 59.026 57.143 5.18 0.00 0.00 4.00
59 60 5.127845 TGGGCTTCAAAATTAAACTGTCACA 59.872 36.000 0.00 0.00 0.00 3.58
105 107 3.503363 TGCAAAGCTAGGTGACATTCAAG 59.497 43.478 0.00 0.00 0.00 3.02
110 112 4.495422 AGCTAGGTGACATTCAAGTAACG 58.505 43.478 0.00 0.00 0.00 3.18
114 116 2.159627 GGTGACATTCAAGTAACGCCTG 59.840 50.000 0.00 0.00 0.00 4.85
133 135 4.526262 GCCTGTATGATCACTCCATAGTCT 59.474 45.833 0.00 0.00 31.97 3.24
148 150 9.190317 ACTCCATAGTCTCATATATTATTCGCA 57.810 33.333 0.00 0.00 0.00 5.10
156 158 9.102757 GTCTCATATATTATTCGCATGGATGTT 57.897 33.333 0.00 0.00 0.00 2.71
178 180 2.178912 TCACCACCGAAAGACAATCC 57.821 50.000 0.00 0.00 0.00 3.01
179 181 1.418264 TCACCACCGAAAGACAATCCA 59.582 47.619 0.00 0.00 0.00 3.41
182 184 3.623060 CACCACCGAAAGACAATCCATAG 59.377 47.826 0.00 0.00 0.00 2.23
196 198 3.003394 TCCATAGCCACCACAATCTTG 57.997 47.619 0.00 0.00 0.00 3.02
201 203 0.890683 GCCACCACAATCTTGGGAAG 59.109 55.000 0.00 0.00 41.49 3.46
216 959 1.303309 GGAAGGATGATCTTGGCGTG 58.697 55.000 0.00 0.00 0.00 5.34
224 967 7.898014 AGGATGATCTTGGCGTGTATATATA 57.102 36.000 0.00 0.00 0.00 0.86
226 969 8.363390 AGGATGATCTTGGCGTGTATATATATG 58.637 37.037 5.44 0.00 0.00 1.78
227 970 8.144478 GGATGATCTTGGCGTGTATATATATGT 58.856 37.037 5.44 0.00 0.00 2.29
228 971 8.877808 ATGATCTTGGCGTGTATATATATGTG 57.122 34.615 5.44 0.00 0.00 3.21
315 1159 3.704151 GCCTTTGCCCTTCTGCAT 58.296 55.556 0.00 0.00 41.70 3.96
320 1164 2.235402 CCTTTGCCCTTCTGCATGATTT 59.765 45.455 0.00 0.00 41.70 2.17
328 1172 1.466856 TCTGCATGATTTGAGGGTGC 58.533 50.000 0.00 0.00 36.39 5.01
335 1179 1.180029 GATTTGAGGGTGCAGCATGT 58.820 50.000 19.06 0.74 39.31 3.21
369 1217 3.577667 CACCACCATGTGCATTAGTTTG 58.422 45.455 0.00 0.00 31.34 2.93
373 1221 4.699735 CCACCATGTGCATTAGTTTGAGTA 59.300 41.667 0.00 0.00 31.34 2.59
406 1254 9.786105 TTATGATACTTGTAATCGTCGTTTACA 57.214 29.630 19.88 19.88 37.68 2.41
407 1255 8.867112 ATGATACTTGTAATCGTCGTTTACAT 57.133 30.769 22.82 14.81 38.84 2.29
408 1256 9.955208 ATGATACTTGTAATCGTCGTTTACATA 57.045 29.630 22.82 16.06 38.84 2.29
437 1292 2.689553 TCCTGCTTATGATCACGCAA 57.310 45.000 14.63 2.76 31.24 4.85
457 1312 0.031314 CACGTCTAGCATGCGAGGAT 59.969 55.000 25.04 10.13 0.00 3.24
458 1313 1.266989 CACGTCTAGCATGCGAGGATA 59.733 52.381 25.04 5.83 0.00 2.59
503 1358 5.945155 TCCCGTGCATTACTTATTCAAAAC 58.055 37.500 0.00 0.00 0.00 2.43
506 1361 7.390996 TCCCGTGCATTACTTATTCAAAACTAA 59.609 33.333 0.00 0.00 0.00 2.24
525 1380 3.611766 AATGCTACGTGGAGCTTTACT 57.388 42.857 11.40 0.00 43.27 2.24
528 1383 2.297880 TGCTACGTGGAGCTTTACTGAA 59.702 45.455 11.40 0.00 43.27 3.02
534 1389 4.748600 ACGTGGAGCTTTACTGAAGTTTAC 59.251 41.667 0.00 0.00 37.69 2.01
549 1443 9.028185 ACTGAAGTTTACTTTAGTTACACTTCG 57.972 33.333 12.65 14.00 46.45 3.79
550 1444 9.241317 CTGAAGTTTACTTTAGTTACACTTCGA 57.759 33.333 15.97 0.00 35.57 3.71
586 1480 3.015327 GCAGCCATTCTCTGTTCTCAAT 58.985 45.455 0.00 0.00 34.21 2.57
603 1497 6.647212 TCTCAATACTATTGTTGCGAACTG 57.353 37.500 8.37 0.00 0.00 3.16
604 1498 5.580691 TCTCAATACTATTGTTGCGAACTGG 59.419 40.000 8.37 0.00 0.00 4.00
605 1499 5.242434 TCAATACTATTGTTGCGAACTGGT 58.758 37.500 8.37 0.00 0.00 4.00
606 1500 5.703592 TCAATACTATTGTTGCGAACTGGTT 59.296 36.000 8.37 0.00 0.00 3.67
607 1501 3.896648 ACTATTGTTGCGAACTGGTTG 57.103 42.857 0.00 0.00 0.00 3.77
608 1502 2.031157 ACTATTGTTGCGAACTGGTTGC 60.031 45.455 0.00 0.00 0.00 4.17
609 1503 1.032014 ATTGTTGCGAACTGGTTGCT 58.968 45.000 6.47 0.00 0.00 3.91
610 1504 0.814457 TTGTTGCGAACTGGTTGCTT 59.186 45.000 6.47 0.00 0.00 3.91
612 1506 1.199624 GTTGCGAACTGGTTGCTTTG 58.800 50.000 6.47 0.00 0.00 2.77
613 1507 0.527385 TTGCGAACTGGTTGCTTTGC 60.527 50.000 6.47 0.00 0.00 3.68
614 1508 1.065600 GCGAACTGGTTGCTTTGCA 59.934 52.632 0.00 0.00 36.47 4.08
615 1509 0.527385 GCGAACTGGTTGCTTTGCAA 60.527 50.000 0.00 0.00 46.80 4.08
640 1534 3.384168 TGCAAGTACCTGGACTATGGAT 58.616 45.455 0.00 0.00 0.00 3.41
642 1536 4.130118 GCAAGTACCTGGACTATGGATTG 58.870 47.826 0.00 0.00 0.00 2.67
651 1546 5.296151 TGGACTATGGATTGATCAACCTC 57.704 43.478 11.07 5.36 0.00 3.85
655 1550 6.931840 GGACTATGGATTGATCAACCTCTAAC 59.068 42.308 11.07 7.59 0.00 2.34
663 1558 9.620259 GGATTGATCAACCTCTAACTAATCTTT 57.380 33.333 11.07 0.00 0.00 2.52
666 1561 9.877178 TTGATCAACCTCTAACTAATCTTTCTC 57.123 33.333 3.38 0.00 0.00 2.87
667 1562 9.035890 TGATCAACCTCTAACTAATCTTTCTCA 57.964 33.333 0.00 0.00 0.00 3.27
668 1563 9.877178 GATCAACCTCTAACTAATCTTTCTCAA 57.123 33.333 0.00 0.00 0.00 3.02
670 1565 9.877178 TCAACCTCTAACTAATCTTTCTCAATC 57.123 33.333 0.00 0.00 0.00 2.67
671 1566 9.103861 CAACCTCTAACTAATCTTTCTCAATCC 57.896 37.037 0.00 0.00 0.00 3.01
672 1567 7.493367 ACCTCTAACTAATCTTTCTCAATCCG 58.507 38.462 0.00 0.00 0.00 4.18
673 1568 6.422400 CCTCTAACTAATCTTTCTCAATCCGC 59.578 42.308 0.00 0.00 0.00 5.54
674 1569 6.873997 TCTAACTAATCTTTCTCAATCCGCA 58.126 36.000 0.00 0.00 0.00 5.69
675 1570 7.327975 TCTAACTAATCTTTCTCAATCCGCAA 58.672 34.615 0.00 0.00 0.00 4.85
676 1571 6.817765 AACTAATCTTTCTCAATCCGCAAA 57.182 33.333 0.00 0.00 0.00 3.68
677 1572 6.817765 ACTAATCTTTCTCAATCCGCAAAA 57.182 33.333 0.00 0.00 0.00 2.44
678 1573 7.214467 ACTAATCTTTCTCAATCCGCAAAAA 57.786 32.000 0.00 0.00 0.00 1.94
725 1620 3.334691 ACTCCATGTGAACATTGTACCG 58.665 45.455 0.00 0.00 33.61 4.02
727 1622 1.742831 CCATGTGAACATTGTACCGGG 59.257 52.381 6.32 0.00 33.61 5.73
781 1679 1.136891 GCACAAAAGTGGCTTCTTGGT 59.863 47.619 0.00 0.00 0.00 3.67
821 1721 4.572985 TTGCATCAAAAGTCAACCTCAG 57.427 40.909 0.00 0.00 0.00 3.35
840 1740 1.439644 GAGAGCAGAGCTAACCCCG 59.560 63.158 0.00 0.00 39.88 5.73
841 1741 2.202946 GAGCAGAGCTAACCCCGC 60.203 66.667 0.00 0.00 39.88 6.13
842 1742 2.685380 AGCAGAGCTAACCCCGCT 60.685 61.111 0.00 0.00 36.99 5.52
843 1743 2.512515 GCAGAGCTAACCCCGCTG 60.513 66.667 0.00 0.00 37.96 5.18
844 1744 3.019003 GCAGAGCTAACCCCGCTGA 62.019 63.158 0.80 0.00 37.96 4.26
845 1745 1.153549 CAGAGCTAACCCCGCTGAC 60.154 63.158 0.00 0.00 37.96 3.51
846 1746 1.305381 AGAGCTAACCCCGCTGACT 60.305 57.895 0.00 0.00 37.96 3.41
847 1747 0.905337 AGAGCTAACCCCGCTGACTT 60.905 55.000 0.00 0.00 37.96 3.01
851 1751 1.610886 GCTAACCCCGCTGACTTTTCT 60.611 52.381 0.00 0.00 0.00 2.52
853 1753 2.943036 AACCCCGCTGACTTTTCTTA 57.057 45.000 0.00 0.00 0.00 2.10
874 1774 9.775539 TTCTTACCCATGCTCTCTTCTATATAT 57.224 33.333 0.00 0.00 0.00 0.86
901 1801 3.120408 CGTGATGCTTCAAAGTTGAGAGG 60.120 47.826 3.51 0.00 38.61 3.69
925 1845 2.489275 CCCCCACACACAAGCACAC 61.489 63.158 0.00 0.00 0.00 3.82
961 1891 5.118990 TGCTAATTAAGAGCAACTAGCCAG 58.881 41.667 11.42 0.00 46.71 4.85
997 1934 3.190874 GCATTACTTCTCCTTGTCTCCG 58.809 50.000 0.00 0.00 0.00 4.63
998 1935 3.119101 GCATTACTTCTCCTTGTCTCCGA 60.119 47.826 0.00 0.00 0.00 4.55
1011 1948 2.047655 TCCGAAATGGCGAACGCT 60.048 55.556 18.14 0.00 41.60 5.07
1040 1977 1.892819 CTCCTCATCACGGTGCTGGT 61.893 60.000 11.63 0.00 0.00 4.00
1360 6757 1.016130 CACCTGCTCTAACCAGTGCG 61.016 60.000 0.00 0.00 42.88 5.34
1371 6768 0.392461 ACCAGTGCGACAACAAGTGT 60.392 50.000 0.00 0.00 45.74 3.55
1413 11385 6.900299 GCTACGCACAGTAATTAATCAAGTTC 59.100 38.462 0.00 0.00 34.45 3.01
1415 11387 5.938125 ACGCACAGTAATTAATCAAGTTCCT 59.062 36.000 0.00 0.00 0.00 3.36
1419 11391 6.150976 CACAGTAATTAATCAAGTTCCTGCCA 59.849 38.462 0.00 0.00 0.00 4.92
1443 11415 2.541178 CGACAGGCATAGAACTCGTACC 60.541 54.545 0.00 0.00 0.00 3.34
1459 11432 5.126396 TCGTACCATATGAAGATCTGCAG 57.874 43.478 9.83 7.63 0.00 4.41
1464 11437 6.239217 ACCATATGAAGATCTGCAGTACAA 57.761 37.500 14.67 0.00 0.00 2.41
1466 11439 7.112122 ACCATATGAAGATCTGCAGTACAAAA 58.888 34.615 14.67 0.00 0.00 2.44
1467 11440 7.281774 ACCATATGAAGATCTGCAGTACAAAAG 59.718 37.037 14.67 0.00 0.00 2.27
1474 11447 6.334202 AGATCTGCAGTACAAAAGTAGCTAC 58.666 40.000 16.43 16.43 0.00 3.58
1475 11448 4.482386 TCTGCAGTACAAAAGTAGCTACG 58.518 43.478 17.99 6.60 0.00 3.51
1476 11449 4.216902 TCTGCAGTACAAAAGTAGCTACGA 59.783 41.667 17.99 2.01 0.00 3.43
1477 11450 4.232221 TGCAGTACAAAAGTAGCTACGAC 58.768 43.478 17.99 10.22 0.00 4.34
1478 11451 4.022589 TGCAGTACAAAAGTAGCTACGACT 60.023 41.667 17.99 12.05 0.00 4.18
1479 11452 5.181811 TGCAGTACAAAAGTAGCTACGACTA 59.818 40.000 17.99 2.55 0.00 2.59
1480 11453 5.511025 GCAGTACAAAAGTAGCTACGACTAC 59.489 44.000 17.99 13.14 42.40 2.73
1481 11454 6.026513 CAGTACAAAAGTAGCTACGACTACC 58.973 44.000 17.99 5.44 42.97 3.18
1482 11455 5.942826 AGTACAAAAGTAGCTACGACTACCT 59.057 40.000 17.99 7.50 42.97 3.08
1483 11456 5.307926 ACAAAAGTAGCTACGACTACCTC 57.692 43.478 17.99 0.00 42.97 3.85
1484 11457 4.157472 ACAAAAGTAGCTACGACTACCTCC 59.843 45.833 17.99 0.00 42.97 4.30
1485 11458 2.237393 AGTAGCTACGACTACCTCCG 57.763 55.000 17.99 0.00 42.97 4.63
1486 11459 1.484240 AGTAGCTACGACTACCTCCGT 59.516 52.381 17.99 0.00 42.97 4.69
1487 11460 1.864082 GTAGCTACGACTACCTCCGTC 59.136 57.143 8.40 0.00 39.86 4.79
1488 11461 0.463474 AGCTACGACTACCTCCGTCC 60.463 60.000 0.00 0.00 39.86 4.79
1489 11462 0.463474 GCTACGACTACCTCCGTCCT 60.463 60.000 0.00 0.00 39.86 3.85
1490 11463 1.297664 CTACGACTACCTCCGTCCTG 58.702 60.000 0.00 0.00 39.86 3.86
1491 11464 0.615331 TACGACTACCTCCGTCCTGT 59.385 55.000 0.00 0.00 39.86 4.00
1492 11465 0.251077 ACGACTACCTCCGTCCTGTT 60.251 55.000 0.00 0.00 33.23 3.16
1493 11466 0.886563 CGACTACCTCCGTCCTGTTT 59.113 55.000 0.00 0.00 0.00 2.83
1494 11467 1.271656 CGACTACCTCCGTCCTGTTTT 59.728 52.381 0.00 0.00 0.00 2.43
1495 11468 2.489329 CGACTACCTCCGTCCTGTTTTA 59.511 50.000 0.00 0.00 0.00 1.52
1496 11469 3.129988 CGACTACCTCCGTCCTGTTTTAT 59.870 47.826 0.00 0.00 0.00 1.40
1497 11470 4.381292 CGACTACCTCCGTCCTGTTTTATT 60.381 45.833 0.00 0.00 0.00 1.40
1498 11471 4.828829 ACTACCTCCGTCCTGTTTTATTG 58.171 43.478 0.00 0.00 0.00 1.90
1499 11472 3.067684 ACCTCCGTCCTGTTTTATTGG 57.932 47.619 0.00 0.00 0.00 3.16
1500 11473 2.374170 ACCTCCGTCCTGTTTTATTGGT 59.626 45.455 0.00 0.00 0.00 3.67
1501 11474 3.181437 ACCTCCGTCCTGTTTTATTGGTT 60.181 43.478 0.00 0.00 0.00 3.67
1502 11475 3.439129 CCTCCGTCCTGTTTTATTGGTTC 59.561 47.826 0.00 0.00 0.00 3.62
1503 11476 4.324267 CTCCGTCCTGTTTTATTGGTTCT 58.676 43.478 0.00 0.00 0.00 3.01
1504 11477 4.721132 TCCGTCCTGTTTTATTGGTTCTT 58.279 39.130 0.00 0.00 0.00 2.52
1505 11478 5.867330 TCCGTCCTGTTTTATTGGTTCTTA 58.133 37.500 0.00 0.00 0.00 2.10
1506 11479 6.478129 TCCGTCCTGTTTTATTGGTTCTTAT 58.522 36.000 0.00 0.00 0.00 1.73
1507 11480 6.943718 TCCGTCCTGTTTTATTGGTTCTTATT 59.056 34.615 0.00 0.00 0.00 1.40
1508 11481 7.027161 CCGTCCTGTTTTATTGGTTCTTATTG 58.973 38.462 0.00 0.00 0.00 1.90
1509 11482 7.308951 CCGTCCTGTTTTATTGGTTCTTATTGT 60.309 37.037 0.00 0.00 0.00 2.71
1510 11483 8.723311 CGTCCTGTTTTATTGGTTCTTATTGTA 58.277 33.333 0.00 0.00 0.00 2.41
1601 11574 8.964420 ACCATTGAAAACTATGTTCAAATACG 57.036 30.769 3.91 0.00 45.43 3.06
1602 11575 8.788806 ACCATTGAAAACTATGTTCAAATACGA 58.211 29.630 3.91 0.00 45.43 3.43
1603 11576 9.619316 CCATTGAAAACTATGTTCAAATACGAA 57.381 29.630 3.91 0.00 45.43 3.85
1606 11579 9.834628 TTGAAAACTATGTTCAAATACGAATCC 57.165 29.630 0.00 0.00 40.96 3.01
1607 11580 9.004717 TGAAAACTATGTTCAAATACGAATCCA 57.995 29.630 0.00 0.00 32.13 3.41
1608 11581 9.490663 GAAAACTATGTTCAAATACGAATCCAG 57.509 33.333 0.00 0.00 0.00 3.86
1609 11582 6.604735 ACTATGTTCAAATACGAATCCAGC 57.395 37.500 0.00 0.00 0.00 4.85
1610 11583 6.112734 ACTATGTTCAAATACGAATCCAGCA 58.887 36.000 0.00 0.00 0.00 4.41
1611 11584 5.895636 ATGTTCAAATACGAATCCAGCAA 57.104 34.783 0.00 0.00 0.00 3.91
1612 11585 5.895636 TGTTCAAATACGAATCCAGCAAT 57.104 34.783 0.00 0.00 0.00 3.56
1613 11586 6.993786 TGTTCAAATACGAATCCAGCAATA 57.006 33.333 0.00 0.00 0.00 1.90
1614 11587 7.566760 TGTTCAAATACGAATCCAGCAATAT 57.433 32.000 0.00 0.00 0.00 1.28
1615 11588 8.669946 TGTTCAAATACGAATCCAGCAATATA 57.330 30.769 0.00 0.00 0.00 0.86
1616 11589 9.114952 TGTTCAAATACGAATCCAGCAATATAA 57.885 29.630 0.00 0.00 0.00 0.98
1673 11646 9.823647 TTAAATCTTTGGTCAAAATTTAGCACA 57.176 25.926 15.00 0.00 32.22 4.57
1674 11647 8.729805 AAATCTTTGGTCAAAATTTAGCACAA 57.270 26.923 0.00 0.00 0.00 3.33
1675 11648 8.729805 AATCTTTGGTCAAAATTTAGCACAAA 57.270 26.923 0.00 1.56 0.00 2.83
1676 11649 8.907222 ATCTTTGGTCAAAATTTAGCACAAAT 57.093 26.923 9.81 0.00 0.00 2.32
1677 11650 8.729805 TCTTTGGTCAAAATTTAGCACAAATT 57.270 26.923 9.81 3.84 0.00 1.82
1678 11651 9.823647 TCTTTGGTCAAAATTTAGCACAAATTA 57.176 25.926 8.84 0.00 30.38 1.40
1679 11652 9.862585 CTTTGGTCAAAATTTAGCACAAATTAC 57.137 29.630 8.84 5.06 30.38 1.89
1680 11653 8.948631 TTGGTCAAAATTTAGCACAAATTACA 57.051 26.923 8.84 3.27 30.38 2.41
1681 11654 8.948631 TGGTCAAAATTTAGCACAAATTACAA 57.051 26.923 8.84 0.00 30.38 2.41
1682 11655 9.383519 TGGTCAAAATTTAGCACAAATTACAAA 57.616 25.926 8.84 0.00 30.38 2.83
1683 11656 9.862585 GGTCAAAATTTAGCACAAATTACAAAG 57.137 29.630 8.84 1.03 30.38 2.77
1684 11657 9.368921 GTCAAAATTTAGCACAAATTACAAAGC 57.631 29.630 8.84 0.00 30.38 3.51
1685 11658 9.102757 TCAAAATTTAGCACAAATTACAAAGCA 57.897 25.926 8.84 0.00 30.38 3.91
1686 11659 9.713740 CAAAATTTAGCACAAATTACAAAGCAA 57.286 25.926 8.84 0.00 30.38 3.91
1688 11661 9.715123 AAATTTAGCACAAATTACAAAGCAAAC 57.285 25.926 8.84 0.00 30.38 2.93
1689 11662 8.661352 ATTTAGCACAAATTACAAAGCAAACT 57.339 26.923 0.00 0.00 0.00 2.66
1690 11663 9.757227 ATTTAGCACAAATTACAAAGCAAACTA 57.243 25.926 0.00 0.00 0.00 2.24
1691 11664 9.587772 TTTAGCACAAATTACAAAGCAAACTAA 57.412 25.926 0.00 0.00 0.00 2.24
1692 11665 9.757227 TTAGCACAAATTACAAAGCAAACTAAT 57.243 25.926 0.00 0.00 0.00 1.73
1694 11667 9.757227 AGCACAAATTACAAAGCAAACTAATAA 57.243 25.926 0.00 0.00 0.00 1.40
1703 11676 7.305474 ACAAAGCAAACTAATAAATCAGGACG 58.695 34.615 0.00 0.00 0.00 4.79
1704 11677 6.436843 AAGCAAACTAATAAATCAGGACGG 57.563 37.500 0.00 0.00 0.00 4.79
1705 11678 5.741011 AGCAAACTAATAAATCAGGACGGA 58.259 37.500 0.00 0.00 0.00 4.69
1706 11679 5.817816 AGCAAACTAATAAATCAGGACGGAG 59.182 40.000 0.00 0.00 0.00 4.63
1707 11680 5.007724 GCAAACTAATAAATCAGGACGGAGG 59.992 44.000 0.00 0.00 0.00 4.30
1708 11681 5.952347 AACTAATAAATCAGGACGGAGGT 57.048 39.130 0.00 0.00 0.00 3.85
1709 11682 5.277857 ACTAATAAATCAGGACGGAGGTG 57.722 43.478 0.00 0.00 0.00 4.00
1710 11683 3.560636 AATAAATCAGGACGGAGGTGG 57.439 47.619 0.00 0.00 0.00 4.61
1711 11684 1.946984 TAAATCAGGACGGAGGTGGT 58.053 50.000 0.00 0.00 0.00 4.16
1712 11685 1.946984 AAATCAGGACGGAGGTGGTA 58.053 50.000 0.00 0.00 0.00 3.25
1713 11686 2.176247 AATCAGGACGGAGGTGGTAT 57.824 50.000 0.00 0.00 0.00 2.73
1714 11687 1.414158 ATCAGGACGGAGGTGGTATG 58.586 55.000 0.00 0.00 0.00 2.39
1715 11688 0.040646 TCAGGACGGAGGTGGTATGT 59.959 55.000 0.00 0.00 0.00 2.29
1716 11689 0.902531 CAGGACGGAGGTGGTATGTT 59.097 55.000 0.00 0.00 0.00 2.71
1717 11690 1.278127 CAGGACGGAGGTGGTATGTTT 59.722 52.381 0.00 0.00 0.00 2.83
1718 11691 1.982958 AGGACGGAGGTGGTATGTTTT 59.017 47.619 0.00 0.00 0.00 2.43
1719 11692 2.374170 AGGACGGAGGTGGTATGTTTTT 59.626 45.455 0.00 0.00 0.00 1.94
1748 11721 4.855715 TTGATCGAGATAGCTTACCAGG 57.144 45.455 0.00 0.00 0.00 4.45
1749 11722 2.558795 TGATCGAGATAGCTTACCAGGC 59.441 50.000 0.00 0.00 0.00 4.85
1750 11723 2.366640 TCGAGATAGCTTACCAGGCT 57.633 50.000 0.00 0.00 43.02 4.58
1751 11724 2.667470 TCGAGATAGCTTACCAGGCTT 58.333 47.619 0.00 0.00 40.74 4.35
1752 11725 2.362397 TCGAGATAGCTTACCAGGCTTG 59.638 50.000 0.00 0.00 40.74 4.01
1753 11726 2.101582 CGAGATAGCTTACCAGGCTTGT 59.898 50.000 0.00 0.00 40.74 3.16
1754 11727 3.723260 GAGATAGCTTACCAGGCTTGTC 58.277 50.000 0.00 0.00 40.74 3.18
1755 11728 2.101582 AGATAGCTTACCAGGCTTGTCG 59.898 50.000 0.00 0.00 40.74 4.35
1756 11729 1.263356 TAGCTTACCAGGCTTGTCGT 58.737 50.000 0.00 0.00 40.74 4.34
1757 11730 0.037232 AGCTTACCAGGCTTGTCGTC 60.037 55.000 0.00 0.00 36.56 4.20
1758 11731 0.037232 GCTTACCAGGCTTGTCGTCT 60.037 55.000 0.00 0.00 0.00 4.18
1759 11732 1.714794 CTTACCAGGCTTGTCGTCTG 58.285 55.000 0.00 0.00 45.03 3.51
1762 11735 4.779475 CAGGCTTGTCGTCTGGTT 57.221 55.556 0.00 0.00 41.70 3.67
1763 11736 2.533318 CAGGCTTGTCGTCTGGTTC 58.467 57.895 0.00 0.00 41.70 3.62
1764 11737 1.006102 AGGCTTGTCGTCTGGTTCG 60.006 57.895 0.00 0.00 0.00 3.95
1765 11738 1.300697 GGCTTGTCGTCTGGTTCGT 60.301 57.895 0.00 0.00 0.00 3.85
1766 11739 0.038892 GGCTTGTCGTCTGGTTCGTA 60.039 55.000 0.00 0.00 0.00 3.43
1767 11740 1.403780 GGCTTGTCGTCTGGTTCGTAT 60.404 52.381 0.00 0.00 0.00 3.06
1768 11741 2.159338 GGCTTGTCGTCTGGTTCGTATA 60.159 50.000 0.00 0.00 0.00 1.47
1769 11742 3.490419 GGCTTGTCGTCTGGTTCGTATAT 60.490 47.826 0.00 0.00 0.00 0.86
1770 11743 4.261322 GGCTTGTCGTCTGGTTCGTATATA 60.261 45.833 0.00 0.00 0.00 0.86
1771 11744 4.674211 GCTTGTCGTCTGGTTCGTATATAC 59.326 45.833 2.53 2.53 0.00 1.47
1772 11745 5.505324 GCTTGTCGTCTGGTTCGTATATACT 60.505 44.000 11.05 0.00 0.00 2.12
1773 11746 5.663795 TGTCGTCTGGTTCGTATATACTC 57.336 43.478 11.05 2.02 0.00 2.59
1774 11747 4.512944 TGTCGTCTGGTTCGTATATACTCC 59.487 45.833 11.05 10.41 0.00 3.85
1775 11748 4.512944 GTCGTCTGGTTCGTATATACTCCA 59.487 45.833 11.05 13.73 0.00 3.86
1776 11749 4.753610 TCGTCTGGTTCGTATATACTCCAG 59.246 45.833 25.71 25.71 42.36 3.86
1777 11750 4.613167 CGTCTGGTTCGTATATACTCCAGC 60.613 50.000 26.26 22.14 41.24 4.85
1778 11751 4.519730 GTCTGGTTCGTATATACTCCAGCT 59.480 45.833 26.26 0.00 41.24 4.24
1779 11752 5.704515 GTCTGGTTCGTATATACTCCAGCTA 59.295 44.000 26.26 16.64 41.24 3.32
1780 11753 6.374894 GTCTGGTTCGTATATACTCCAGCTAT 59.625 42.308 26.26 0.00 41.24 2.97
1781 11754 6.374613 TCTGGTTCGTATATACTCCAGCTATG 59.625 42.308 26.26 14.64 41.24 2.23
1782 11755 6.008331 TGGTTCGTATATACTCCAGCTATGT 58.992 40.000 11.05 0.00 0.00 2.29
1783 11756 6.072119 TGGTTCGTATATACTCCAGCTATGTG 60.072 42.308 11.05 0.00 0.00 3.21
1784 11757 5.562506 TCGTATATACTCCAGCTATGTGC 57.437 43.478 11.05 0.00 43.29 4.57
1806 11779 2.431683 GCAGAGGCAAGTGTGGGA 59.568 61.111 0.00 0.00 40.72 4.37
1807 11780 1.001641 GCAGAGGCAAGTGTGGGAT 60.002 57.895 0.00 0.00 40.72 3.85
1808 11781 0.610232 GCAGAGGCAAGTGTGGGATT 60.610 55.000 0.00 0.00 40.72 3.01
1809 11782 1.171308 CAGAGGCAAGTGTGGGATTG 58.829 55.000 0.00 0.00 0.00 2.67
1810 11783 1.067295 AGAGGCAAGTGTGGGATTGA 58.933 50.000 0.00 0.00 0.00 2.57
1811 11784 1.004044 AGAGGCAAGTGTGGGATTGAG 59.996 52.381 0.00 0.00 0.00 3.02
1812 11785 0.610232 AGGCAAGTGTGGGATTGAGC 60.610 55.000 0.00 0.00 0.00 4.26
1813 11786 0.610232 GGCAAGTGTGGGATTGAGCT 60.610 55.000 0.00 0.00 0.00 4.09
1814 11787 1.340017 GGCAAGTGTGGGATTGAGCTA 60.340 52.381 0.00 0.00 0.00 3.32
1815 11788 2.648059 GCAAGTGTGGGATTGAGCTAT 58.352 47.619 0.00 0.00 0.00 2.97
1816 11789 3.433598 GGCAAGTGTGGGATTGAGCTATA 60.434 47.826 0.00 0.00 0.00 1.31
1817 11790 4.392940 GCAAGTGTGGGATTGAGCTATAT 58.607 43.478 0.00 0.00 0.00 0.86
1818 11791 4.453819 GCAAGTGTGGGATTGAGCTATATC 59.546 45.833 0.00 0.00 0.00 1.63
1819 11792 4.899352 AGTGTGGGATTGAGCTATATCC 57.101 45.455 15.23 15.23 39.70 2.59
1820 11793 4.497516 AGTGTGGGATTGAGCTATATCCT 58.502 43.478 20.33 3.89 40.18 3.24
1821 11794 5.655394 AGTGTGGGATTGAGCTATATCCTA 58.345 41.667 20.33 14.66 40.18 2.94
1822 11795 5.482175 AGTGTGGGATTGAGCTATATCCTAC 59.518 44.000 24.69 24.69 46.68 3.18
1824 11797 5.971763 GTGGGATTGAGCTATATCCTACAG 58.028 45.833 25.69 0.00 46.12 2.74
1825 11798 5.482175 GTGGGATTGAGCTATATCCTACAGT 59.518 44.000 25.69 1.39 46.12 3.55
1826 11799 6.663953 GTGGGATTGAGCTATATCCTACAGTA 59.336 42.308 25.69 8.17 46.12 2.74
1827 11800 7.343316 GTGGGATTGAGCTATATCCTACAGTAT 59.657 40.741 25.69 0.00 46.12 2.12
1828 11801 7.901322 TGGGATTGAGCTATATCCTACAGTATT 59.099 37.037 20.33 0.00 40.18 1.89
1829 11802 9.422681 GGGATTGAGCTATATCCTACAGTATTA 57.577 37.037 20.33 0.00 40.18 0.98
1956 11929 9.607988 TTTCATATGTAATCACATACGAAACCT 57.392 29.630 6.21 0.00 45.52 3.50
1960 11933 5.353938 TGTAATCACATACGAAACCTAGCC 58.646 41.667 0.00 0.00 0.00 3.93
1961 11934 2.973694 TCACATACGAAACCTAGCCC 57.026 50.000 0.00 0.00 0.00 5.19
1962 11935 1.483415 TCACATACGAAACCTAGCCCC 59.517 52.381 0.00 0.00 0.00 5.80
1963 11936 0.835276 ACATACGAAACCTAGCCCCC 59.165 55.000 0.00 0.00 0.00 5.40
1964 11937 0.249741 CATACGAAACCTAGCCCCCG 60.250 60.000 0.00 0.00 0.00 5.73
1965 11938 2.036428 ATACGAAACCTAGCCCCCGC 62.036 60.000 0.00 0.00 0.00 6.13
1967 11940 4.091939 GAAACCTAGCCCCCGCGT 62.092 66.667 4.92 0.00 41.18 6.01
1968 11941 4.091939 AAACCTAGCCCCCGCGTC 62.092 66.667 4.92 0.00 41.18 5.19
2021 11994 4.554036 CCCTTGCCGCTAGCCCTC 62.554 72.222 9.66 0.00 42.71 4.30
2022 11995 4.554036 CCTTGCCGCTAGCCCTCC 62.554 72.222 9.66 0.00 42.71 4.30
2023 11996 3.474570 CTTGCCGCTAGCCCTCCT 61.475 66.667 9.66 0.00 42.71 3.69
2024 11997 3.453070 CTTGCCGCTAGCCCTCCTC 62.453 68.421 9.66 0.00 42.71 3.71
2027 12000 2.915137 CCGCTAGCCCTCCTCCTC 60.915 72.222 9.66 0.00 0.00 3.71
2028 12001 2.915137 CGCTAGCCCTCCTCCTCC 60.915 72.222 9.66 0.00 0.00 4.30
2029 12002 2.612251 GCTAGCCCTCCTCCTCCT 59.388 66.667 2.29 0.00 0.00 3.69
2030 12003 1.533033 GCTAGCCCTCCTCCTCCTC 60.533 68.421 2.29 0.00 0.00 3.71
2031 12004 1.155155 CTAGCCCTCCTCCTCCTCC 59.845 68.421 0.00 0.00 0.00 4.30
2032 12005 2.380571 CTAGCCCTCCTCCTCCTCCC 62.381 70.000 0.00 0.00 0.00 4.30
2033 12006 4.890306 GCCCTCCTCCTCCTCCCC 62.890 77.778 0.00 0.00 0.00 4.81
2034 12007 3.039526 CCCTCCTCCTCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
2035 12008 2.652113 CCCTCCTCCTCCTCCCCTT 61.652 68.421 0.00 0.00 0.00 3.95
2036 12009 1.074850 CCTCCTCCTCCTCCCCTTC 60.075 68.421 0.00 0.00 0.00 3.46
2037 12010 1.074850 CTCCTCCTCCTCCCCTTCC 60.075 68.421 0.00 0.00 0.00 3.46
2038 12011 2.040359 CCTCCTCCTCCCCTTCCC 60.040 72.222 0.00 0.00 0.00 3.97
2039 12012 2.040359 CTCCTCCTCCCCTTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
2040 12013 4.089757 TCCTCCTCCCCTTCCCCG 62.090 72.222 0.00 0.00 0.00 5.73
2110 12083 2.788589 GGGTCCTTCTCCCCTCCT 59.211 66.667 0.00 0.00 39.08 3.69
2111 12084 1.383386 GGGTCCTTCTCCCCTCCTC 60.383 68.421 0.00 0.00 39.08 3.71
2112 12085 1.758906 GGTCCTTCTCCCCTCCTCG 60.759 68.421 0.00 0.00 0.00 4.63
2113 12086 2.042843 TCCTTCTCCCCTCCTCGC 60.043 66.667 0.00 0.00 0.00 5.03
2114 12087 3.532155 CCTTCTCCCCTCCTCGCG 61.532 72.222 0.00 0.00 0.00 5.87
2115 12088 2.756283 CTTCTCCCCTCCTCGCGT 60.756 66.667 5.77 0.00 0.00 6.01
2116 12089 2.283676 TTCTCCCCTCCTCGCGTT 60.284 61.111 5.77 0.00 0.00 4.84
2117 12090 2.286127 CTTCTCCCCTCCTCGCGTTC 62.286 65.000 5.77 0.00 0.00 3.95
2118 12091 4.194720 CTCCCCTCCTCGCGTTCG 62.195 72.222 5.77 0.00 0.00 3.95
2120 12093 4.796231 CCCCTCCTCGCGTTCGTG 62.796 72.222 5.77 0.00 36.96 4.35
2199 12172 2.051166 GGCGACGATCTAGACGGC 60.051 66.667 10.53 10.53 45.01 5.68
2202 12175 2.051166 GACGATCTAGACGGCGGC 60.051 66.667 13.24 8.92 34.93 6.53
2203 12176 3.858632 GACGATCTAGACGGCGGCG 62.859 68.421 31.06 31.06 34.93 6.46
2204 12177 4.685026 CGATCTAGACGGCGGCGG 62.685 72.222 35.05 17.48 0.00 6.13
2233 12206 4.101448 GGCTGCAGATGGGTCGGT 62.101 66.667 20.43 0.00 0.00 4.69
2234 12207 2.821366 GCTGCAGATGGGTCGGTG 60.821 66.667 20.43 0.00 0.00 4.94
2235 12208 2.821366 CTGCAGATGGGTCGGTGC 60.821 66.667 8.42 0.00 36.42 5.01
2236 12209 4.408821 TGCAGATGGGTCGGTGCC 62.409 66.667 0.00 0.00 34.91 5.01
2238 12211 3.770040 CAGATGGGTCGGTGCCGA 61.770 66.667 9.48 9.48 46.87 5.54
2246 12219 4.662961 TCGGTGCCGAGCTGTGTG 62.663 66.667 9.48 0.00 44.01 3.82
2268 12241 4.803426 CTGCGTGCGGGTCTCCTC 62.803 72.222 0.00 0.00 0.00 3.71
2271 12244 4.778415 CGTGCGGGTCTCCTCGTG 62.778 72.222 0.00 0.00 0.00 4.35
2272 12245 4.436998 GTGCGGGTCTCCTCGTGG 62.437 72.222 0.00 0.00 0.00 4.94
2353 12326 3.972227 CCAAGGTGGCTTCTCGTG 58.028 61.111 0.00 0.00 0.00 4.35
2354 12327 2.328099 CCAAGGTGGCTTCTCGTGC 61.328 63.158 0.00 0.00 0.00 5.34
2355 12328 2.357517 AAGGTGGCTTCTCGTGCG 60.358 61.111 0.00 0.00 0.00 5.34
2356 12329 2.867855 AAGGTGGCTTCTCGTGCGA 61.868 57.895 0.00 0.00 0.00 5.10
2357 12330 2.771763 AAGGTGGCTTCTCGTGCGAG 62.772 60.000 14.69 14.69 43.21 5.03
2358 12331 2.049063 GTGGCTTCTCGTGCGAGT 60.049 61.111 19.20 0.00 42.49 4.18
2359 12332 1.211969 GTGGCTTCTCGTGCGAGTA 59.788 57.895 19.20 10.53 42.49 2.59
2360 12333 0.179134 GTGGCTTCTCGTGCGAGTAT 60.179 55.000 19.20 0.00 42.49 2.12
2361 12334 0.179137 TGGCTTCTCGTGCGAGTATG 60.179 55.000 19.20 12.17 42.49 2.39
2362 12335 1.483424 GGCTTCTCGTGCGAGTATGC 61.483 60.000 19.20 18.96 42.49 3.14
2363 12336 1.802300 GCTTCTCGTGCGAGTATGCG 61.802 60.000 19.20 7.45 42.49 4.73
2364 12337 1.202973 CTTCTCGTGCGAGTATGCGG 61.203 60.000 19.20 0.00 42.49 5.69
2365 12338 1.650314 TTCTCGTGCGAGTATGCGGA 61.650 55.000 19.20 0.00 42.49 5.54
2366 12339 1.655654 CTCGTGCGAGTATGCGGAG 60.656 63.158 12.87 0.00 37.47 4.63
2367 12340 2.048312 CTCGTGCGAGTATGCGGAGA 62.048 60.000 12.87 0.00 39.18 3.71
2368 12341 1.226575 CGTGCGAGTATGCGGAGAA 60.227 57.895 0.00 0.00 37.81 2.87
2369 12342 1.202973 CGTGCGAGTATGCGGAGAAG 61.203 60.000 0.00 0.00 37.81 2.85
2370 12343 0.100682 GTGCGAGTATGCGGAGAAGA 59.899 55.000 0.00 0.00 37.81 2.87
2371 12344 0.382158 TGCGAGTATGCGGAGAAGAG 59.618 55.000 0.00 0.00 37.81 2.85
2372 12345 0.318275 GCGAGTATGCGGAGAAGAGG 60.318 60.000 0.00 0.00 0.00 3.69
2373 12346 1.025812 CGAGTATGCGGAGAAGAGGT 58.974 55.000 0.00 0.00 0.00 3.85
2374 12347 1.405821 CGAGTATGCGGAGAAGAGGTT 59.594 52.381 0.00 0.00 0.00 3.50
2375 12348 2.796383 CGAGTATGCGGAGAAGAGGTTG 60.796 54.545 0.00 0.00 0.00 3.77
2376 12349 1.134670 AGTATGCGGAGAAGAGGTTGC 60.135 52.381 0.00 0.00 0.00 4.17
2377 12350 0.179111 TATGCGGAGAAGAGGTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
2378 12351 2.815647 GCGGAGAAGAGGTTGCGG 60.816 66.667 0.00 0.00 0.00 5.69
2379 12352 2.815647 CGGAGAAGAGGTTGCGGC 60.816 66.667 0.00 0.00 0.00 6.53
2380 12353 2.815647 GGAGAAGAGGTTGCGGCG 60.816 66.667 0.51 0.51 0.00 6.46
2381 12354 2.048127 GAGAAGAGGTTGCGGCGT 60.048 61.111 9.37 0.00 0.00 5.68
2382 12355 2.357517 AGAAGAGGTTGCGGCGTG 60.358 61.111 9.37 0.00 0.00 5.34
2383 12356 2.665185 GAAGAGGTTGCGGCGTGT 60.665 61.111 9.37 0.00 0.00 4.49
2384 12357 2.954753 GAAGAGGTTGCGGCGTGTG 61.955 63.158 9.37 0.00 0.00 3.82
2385 12358 3.750373 AAGAGGTTGCGGCGTGTGT 62.750 57.895 9.37 0.00 0.00 3.72
2386 12359 3.712881 GAGGTTGCGGCGTGTGTC 61.713 66.667 9.37 0.00 0.00 3.67
2389 12362 3.712881 GTTGCGGCGTGTGTCCTC 61.713 66.667 9.37 0.00 0.00 3.71
2395 12368 4.436998 GCGTGTGTCCTCGGGGAG 62.437 72.222 2.77 0.00 43.12 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.313658 CAGTTTAATTTTGAAGCCCATAAGCC 59.686 38.462 0.00 0.00 0.00 4.35
59 60 9.374838 GCAGGAAGTCATTTTTATTCATGAAAT 57.625 29.630 13.09 4.08 35.96 2.17
105 107 3.181479 TGGAGTGATCATACAGGCGTTAC 60.181 47.826 0.00 0.00 0.00 2.50
110 112 4.526262 AGACTATGGAGTGATCATACAGGC 59.474 45.833 0.00 0.00 35.45 4.85
133 135 8.791327 ACAACATCCATGCGAATAATATATGA 57.209 30.769 0.00 0.00 0.00 2.15
148 150 1.073125 TCGGTGGTGAACAACATCCAT 59.927 47.619 0.00 0.00 36.22 3.41
156 158 2.404923 TTGTCTTTCGGTGGTGAACA 57.595 45.000 0.00 0.00 0.00 3.18
178 180 2.026641 CCCAAGATTGTGGTGGCTATG 58.973 52.381 0.00 0.00 36.90 2.23
179 181 1.922447 TCCCAAGATTGTGGTGGCTAT 59.078 47.619 0.00 0.00 36.90 2.97
182 184 0.890683 CTTCCCAAGATTGTGGTGGC 59.109 55.000 0.00 0.00 36.90 5.01
196 198 0.181350 ACGCCAAGATCATCCTTCCC 59.819 55.000 0.00 0.00 0.00 3.97
201 203 8.144478 ACATATATATACACGCCAAGATCATCC 58.856 37.037 0.00 0.00 0.00 3.51
224 967 7.504924 TGAGATAAAGAAAAACCGTTCACAT 57.495 32.000 0.00 0.00 0.00 3.21
226 969 5.851703 GCTGAGATAAAGAAAAACCGTTCAC 59.148 40.000 0.00 0.00 0.00 3.18
227 970 5.763204 AGCTGAGATAAAGAAAAACCGTTCA 59.237 36.000 0.00 0.00 0.00 3.18
228 971 6.242508 AGCTGAGATAAAGAAAAACCGTTC 57.757 37.500 0.00 0.00 0.00 3.95
306 1150 2.426024 CACCCTCAAATCATGCAGAAGG 59.574 50.000 0.00 0.00 0.00 3.46
315 1159 1.179152 CATGCTGCACCCTCAAATCA 58.821 50.000 3.57 0.00 0.00 2.57
320 1164 1.825090 CTTTACATGCTGCACCCTCA 58.175 50.000 3.57 0.00 0.00 3.86
328 1172 0.171903 GCTGGTGGCTTTACATGCTG 59.828 55.000 0.00 0.00 38.06 4.41
335 1179 1.228429 GTGGTGGCTGGTGGCTTTA 60.228 57.895 0.00 0.00 41.46 1.85
397 1245 9.859692 GCAGGAAACTTATAATATGTAAACGAC 57.140 33.333 0.00 0.00 40.21 4.34
398 1246 9.826574 AGCAGGAAACTTATAATATGTAAACGA 57.173 29.630 0.00 0.00 40.21 3.85
408 1256 8.993121 CGTGATCATAAGCAGGAAACTTATAAT 58.007 33.333 0.00 0.00 38.07 1.28
417 1272 2.677836 GTTGCGTGATCATAAGCAGGAA 59.322 45.455 18.25 6.57 40.90 3.36
421 1276 1.393196 CGTGTTGCGTGATCATAAGCA 59.607 47.619 16.13 16.13 37.89 3.91
433 1288 2.602037 CGCATGCTAGACGTGTTGCG 62.602 60.000 17.13 13.87 45.42 4.85
437 1292 1.139734 CCTCGCATGCTAGACGTGT 59.860 57.895 20.10 0.00 37.62 4.49
490 1345 8.875803 CCACGTAGCATTAGTTTTGAATAAGTA 58.124 33.333 0.00 0.00 0.00 2.24
492 1347 7.970384 TCCACGTAGCATTAGTTTTGAATAAG 58.030 34.615 0.00 0.00 0.00 1.73
503 1358 4.504461 CAGTAAAGCTCCACGTAGCATTAG 59.496 45.833 12.62 0.00 45.30 1.73
506 1361 2.496070 TCAGTAAAGCTCCACGTAGCAT 59.504 45.455 12.62 0.00 45.30 3.79
534 1389 5.625251 TCGTAGCTCGAAGTGTAACTAAAG 58.375 41.667 5.90 0.00 45.25 1.85
586 1480 3.187637 GCAACCAGTTCGCAACAATAGTA 59.812 43.478 2.61 0.00 0.00 1.82
613 1507 4.853924 AGTCCAGGTACTTGCAATTTTG 57.146 40.909 0.00 0.00 34.60 2.44
614 1508 5.418840 CCATAGTCCAGGTACTTGCAATTTT 59.581 40.000 0.00 0.00 34.60 1.82
615 1509 4.949856 CCATAGTCCAGGTACTTGCAATTT 59.050 41.667 0.00 0.00 34.60 1.82
616 1510 4.227300 TCCATAGTCCAGGTACTTGCAATT 59.773 41.667 0.00 0.00 34.60 2.32
617 1511 3.780294 TCCATAGTCCAGGTACTTGCAAT 59.220 43.478 0.00 0.00 34.60 3.56
618 1512 3.178046 TCCATAGTCCAGGTACTTGCAA 58.822 45.455 0.00 0.00 34.60 4.08
619 1513 2.827755 TCCATAGTCCAGGTACTTGCA 58.172 47.619 0.00 0.00 34.60 4.08
623 1517 5.467738 TGATCAATCCATAGTCCAGGTACT 58.532 41.667 0.00 0.00 43.88 2.73
640 1534 9.877178 GAGAAAGATTAGTTAGAGGTTGATCAA 57.123 33.333 3.38 3.38 0.00 2.57
642 1536 9.877178 TTGAGAAAGATTAGTTAGAGGTTGATC 57.123 33.333 0.00 0.00 0.00 2.92
651 1546 7.539712 TTGCGGATTGAGAAAGATTAGTTAG 57.460 36.000 0.00 0.00 0.00 2.34
685 1580 6.601332 TGGAGTGTAGAGGTTTGAGATTTTT 58.399 36.000 0.00 0.00 0.00 1.94
686 1581 6.187727 TGGAGTGTAGAGGTTTGAGATTTT 57.812 37.500 0.00 0.00 0.00 1.82
687 1582 5.825593 TGGAGTGTAGAGGTTTGAGATTT 57.174 39.130 0.00 0.00 0.00 2.17
688 1583 5.249393 ACATGGAGTGTAGAGGTTTGAGATT 59.751 40.000 0.00 0.00 39.91 2.40
689 1584 4.780021 ACATGGAGTGTAGAGGTTTGAGAT 59.220 41.667 0.00 0.00 39.91 2.75
725 1620 6.080648 ACTGAAAATAAACGAAAGGTTCCC 57.919 37.500 0.00 0.00 42.35 3.97
727 1622 9.726232 AACTAACTGAAAATAAACGAAAGGTTC 57.274 29.630 0.00 0.00 42.35 3.62
781 1679 6.146601 TGCAAATTCAACTTCAAGATGACA 57.853 33.333 0.00 0.00 26.15 3.58
821 1721 1.826709 GGGGTTAGCTCTGCTCTCC 59.173 63.158 0.00 0.33 40.44 3.71
840 1740 3.084786 AGCATGGGTAAGAAAAGTCAGC 58.915 45.455 0.00 0.00 0.00 4.26
841 1741 4.583871 AGAGCATGGGTAAGAAAAGTCAG 58.416 43.478 0.00 0.00 0.00 3.51
842 1742 4.287067 AGAGAGCATGGGTAAGAAAAGTCA 59.713 41.667 0.00 0.00 0.00 3.41
843 1743 4.837972 AGAGAGCATGGGTAAGAAAAGTC 58.162 43.478 0.00 0.00 0.00 3.01
844 1744 4.917906 AGAGAGCATGGGTAAGAAAAGT 57.082 40.909 0.00 0.00 0.00 2.66
845 1745 5.495640 AGAAGAGAGCATGGGTAAGAAAAG 58.504 41.667 0.00 0.00 0.00 2.27
846 1746 5.505181 AGAAGAGAGCATGGGTAAGAAAA 57.495 39.130 0.00 0.00 0.00 2.29
847 1747 6.814954 ATAGAAGAGAGCATGGGTAAGAAA 57.185 37.500 0.00 0.00 0.00 2.52
874 1774 6.426633 TCTCAACTTTGAAGCATCACGATTTA 59.573 34.615 0.00 0.00 36.64 1.40
876 1776 4.756642 TCTCAACTTTGAAGCATCACGATT 59.243 37.500 0.00 0.00 36.64 3.34
877 1777 4.318332 TCTCAACTTTGAAGCATCACGAT 58.682 39.130 0.00 0.00 36.64 3.73
878 1778 3.727726 TCTCAACTTTGAAGCATCACGA 58.272 40.909 0.00 0.00 36.64 4.35
887 1787 4.263771 GGGGGAATACCTCTCAACTTTGAA 60.264 45.833 0.00 0.00 36.49 2.69
888 1788 3.265995 GGGGGAATACCTCTCAACTTTGA 59.734 47.826 0.00 0.00 36.49 2.69
889 1789 3.621558 GGGGGAATACCTCTCAACTTTG 58.378 50.000 0.00 0.00 36.49 2.77
955 1883 3.146066 CAAGTGTTTGGCTTACTGGCTA 58.854 45.455 0.00 0.00 42.34 3.93
961 1891 5.121221 AGTAATGCAAGTGTTTGGCTTAC 57.879 39.130 0.00 0.00 34.79 2.34
1011 1948 0.911045 TGATGAGGAGAAGCAGGGCA 60.911 55.000 0.00 0.00 0.00 5.36
1099 2036 1.128188 AGGAAACGGCTCCTCCTTGT 61.128 55.000 1.85 0.00 42.53 3.16
1305 6702 1.219124 GGAGAGCAGATCCACGCAA 59.781 57.895 2.62 0.00 36.79 4.85
1360 6757 1.725164 GCCGTAGCTACACTTGTTGTC 59.275 52.381 23.21 0.00 39.91 3.18
1419 11391 2.427453 ACGAGTTCTATGCCTGTCGAAT 59.573 45.455 0.00 0.00 0.00 3.34
1430 11402 8.735315 CAGATCTTCATATGGTACGAGTTCTAT 58.265 37.037 2.13 0.00 0.00 1.98
1443 11415 8.206325 ACTTTTGTACTGCAGATCTTCATATG 57.794 34.615 23.35 10.53 0.00 1.78
1459 11432 6.188400 AGGTAGTCGTAGCTACTTTTGTAC 57.812 41.667 21.20 13.86 40.70 2.90
1464 11437 2.941720 CGGAGGTAGTCGTAGCTACTTT 59.058 50.000 21.20 9.18 40.70 2.66
1466 11439 1.484240 ACGGAGGTAGTCGTAGCTACT 59.516 52.381 21.20 7.59 40.70 2.57
1467 11440 1.864082 GACGGAGGTAGTCGTAGCTAC 59.136 57.143 14.19 14.19 39.88 3.58
1474 11447 0.886563 AAACAGGACGGAGGTAGTCG 59.113 55.000 0.00 0.00 39.38 4.18
1475 11448 4.732672 ATAAAACAGGACGGAGGTAGTC 57.267 45.455 0.00 0.00 37.86 2.59
1476 11449 4.323257 CCAATAAAACAGGACGGAGGTAGT 60.323 45.833 0.00 0.00 0.00 2.73
1477 11450 4.189231 CCAATAAAACAGGACGGAGGTAG 58.811 47.826 0.00 0.00 0.00 3.18
1478 11451 3.583966 ACCAATAAAACAGGACGGAGGTA 59.416 43.478 0.00 0.00 0.00 3.08
1479 11452 2.374170 ACCAATAAAACAGGACGGAGGT 59.626 45.455 0.00 0.00 0.00 3.85
1480 11453 3.067684 ACCAATAAAACAGGACGGAGG 57.932 47.619 0.00 0.00 0.00 4.30
1481 11454 4.324267 AGAACCAATAAAACAGGACGGAG 58.676 43.478 0.00 0.00 0.00 4.63
1482 11455 4.360951 AGAACCAATAAAACAGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
1483 11456 6.753107 ATAAGAACCAATAAAACAGGACGG 57.247 37.500 0.00 0.00 0.00 4.79
1484 11457 7.590279 ACAATAAGAACCAATAAAACAGGACG 58.410 34.615 0.00 0.00 0.00 4.79
1576 11549 8.788806 TCGTATTTGAACATAGTTTTCAATGGT 58.211 29.630 0.00 0.00 41.45 3.55
1577 11550 9.619316 TTCGTATTTGAACATAGTTTTCAATGG 57.381 29.630 0.00 0.00 41.45 3.16
1580 11553 9.834628 GGATTCGTATTTGAACATAGTTTTCAA 57.165 29.630 0.00 0.00 40.42 2.69
1581 11554 9.004717 TGGATTCGTATTTGAACATAGTTTTCA 57.995 29.630 0.00 0.00 0.00 2.69
1582 11555 9.490663 CTGGATTCGTATTTGAACATAGTTTTC 57.509 33.333 0.00 0.00 0.00 2.29
1583 11556 7.968405 GCTGGATTCGTATTTGAACATAGTTTT 59.032 33.333 0.00 0.00 0.00 2.43
1584 11557 7.120579 TGCTGGATTCGTATTTGAACATAGTTT 59.879 33.333 0.00 0.00 0.00 2.66
1585 11558 6.597672 TGCTGGATTCGTATTTGAACATAGTT 59.402 34.615 0.00 0.00 0.00 2.24
1586 11559 6.112734 TGCTGGATTCGTATTTGAACATAGT 58.887 36.000 0.00 0.00 0.00 2.12
1587 11560 6.603237 TGCTGGATTCGTATTTGAACATAG 57.397 37.500 0.00 0.00 0.00 2.23
1588 11561 6.993786 TTGCTGGATTCGTATTTGAACATA 57.006 33.333 0.00 0.00 0.00 2.29
1589 11562 5.895636 TTGCTGGATTCGTATTTGAACAT 57.104 34.783 0.00 0.00 0.00 2.71
1590 11563 5.895636 ATTGCTGGATTCGTATTTGAACA 57.104 34.783 0.00 0.00 0.00 3.18
1647 11620 9.823647 TGTGCTAAATTTTGACCAAAGATTTAA 57.176 25.926 3.69 6.99 31.37 1.52
1648 11621 9.823647 TTGTGCTAAATTTTGACCAAAGATTTA 57.176 25.926 3.69 14.49 30.93 1.40
1649 11622 8.729805 TTGTGCTAAATTTTGACCAAAGATTT 57.270 26.923 3.69 14.07 32.01 2.17
1650 11623 8.729805 TTTGTGCTAAATTTTGACCAAAGATT 57.270 26.923 3.69 0.00 0.00 2.40
1651 11624 8.907222 ATTTGTGCTAAATTTTGACCAAAGAT 57.093 26.923 16.01 5.05 0.00 2.40
1652 11625 8.729805 AATTTGTGCTAAATTTTGACCAAAGA 57.270 26.923 16.01 3.06 0.00 2.52
1653 11626 9.862585 GTAATTTGTGCTAAATTTTGACCAAAG 57.137 29.630 14.43 2.04 32.64 2.77
1654 11627 9.383519 TGTAATTTGTGCTAAATTTTGACCAAA 57.616 25.926 14.43 14.42 32.64 3.28
1655 11628 8.948631 TGTAATTTGTGCTAAATTTTGACCAA 57.051 26.923 14.43 2.76 32.64 3.67
1656 11629 8.948631 TTGTAATTTGTGCTAAATTTTGACCA 57.051 26.923 14.43 0.00 32.64 4.02
1657 11630 9.862585 CTTTGTAATTTGTGCTAAATTTTGACC 57.137 29.630 14.43 0.00 32.64 4.02
1658 11631 9.368921 GCTTTGTAATTTGTGCTAAATTTTGAC 57.631 29.630 14.43 9.39 32.64 3.18
1659 11632 9.102757 TGCTTTGTAATTTGTGCTAAATTTTGA 57.897 25.926 14.43 0.00 32.64 2.69
1660 11633 9.713740 TTGCTTTGTAATTTGTGCTAAATTTTG 57.286 25.926 14.43 0.00 32.64 2.44
1662 11635 9.715123 GTTTGCTTTGTAATTTGTGCTAAATTT 57.285 25.926 14.43 0.00 32.64 1.82
1663 11636 9.108284 AGTTTGCTTTGTAATTTGTGCTAAATT 57.892 25.926 13.92 13.92 34.55 1.82
1664 11637 8.661352 AGTTTGCTTTGTAATTTGTGCTAAAT 57.339 26.923 0.00 0.00 0.00 1.40
1665 11638 9.587772 TTAGTTTGCTTTGTAATTTGTGCTAAA 57.412 25.926 0.00 0.00 0.00 1.85
1666 11639 9.757227 ATTAGTTTGCTTTGTAATTTGTGCTAA 57.243 25.926 0.00 0.00 0.00 3.09
1668 11641 9.757227 TTATTAGTTTGCTTTGTAATTTGTGCT 57.243 25.926 0.00 0.00 0.00 4.40
1677 11650 8.447833 CGTCCTGATTTATTAGTTTGCTTTGTA 58.552 33.333 0.00 0.00 0.00 2.41
1678 11651 7.305474 CGTCCTGATTTATTAGTTTGCTTTGT 58.695 34.615 0.00 0.00 0.00 2.83
1679 11652 6.747280 CCGTCCTGATTTATTAGTTTGCTTTG 59.253 38.462 0.00 0.00 0.00 2.77
1680 11653 6.657541 TCCGTCCTGATTTATTAGTTTGCTTT 59.342 34.615 0.00 0.00 0.00 3.51
1681 11654 6.177610 TCCGTCCTGATTTATTAGTTTGCTT 58.822 36.000 0.00 0.00 0.00 3.91
1682 11655 5.741011 TCCGTCCTGATTTATTAGTTTGCT 58.259 37.500 0.00 0.00 0.00 3.91
1683 11656 5.007724 CCTCCGTCCTGATTTATTAGTTTGC 59.992 44.000 0.00 0.00 0.00 3.68
1684 11657 6.037172 CACCTCCGTCCTGATTTATTAGTTTG 59.963 42.308 0.00 0.00 0.00 2.93
1685 11658 6.113411 CACCTCCGTCCTGATTTATTAGTTT 58.887 40.000 0.00 0.00 0.00 2.66
1686 11659 5.396436 CCACCTCCGTCCTGATTTATTAGTT 60.396 44.000 0.00 0.00 0.00 2.24
1687 11660 4.101119 CCACCTCCGTCCTGATTTATTAGT 59.899 45.833 0.00 0.00 0.00 2.24
1688 11661 4.101119 ACCACCTCCGTCCTGATTTATTAG 59.899 45.833 0.00 0.00 0.00 1.73
1689 11662 4.035112 ACCACCTCCGTCCTGATTTATTA 58.965 43.478 0.00 0.00 0.00 0.98
1690 11663 2.844348 ACCACCTCCGTCCTGATTTATT 59.156 45.455 0.00 0.00 0.00 1.40
1691 11664 2.478292 ACCACCTCCGTCCTGATTTAT 58.522 47.619 0.00 0.00 0.00 1.40
1692 11665 1.946984 ACCACCTCCGTCCTGATTTA 58.053 50.000 0.00 0.00 0.00 1.40
1693 11666 1.946984 TACCACCTCCGTCCTGATTT 58.053 50.000 0.00 0.00 0.00 2.17
1694 11667 1.762957 CATACCACCTCCGTCCTGATT 59.237 52.381 0.00 0.00 0.00 2.57
1695 11668 1.343075 ACATACCACCTCCGTCCTGAT 60.343 52.381 0.00 0.00 0.00 2.90
1696 11669 0.040646 ACATACCACCTCCGTCCTGA 59.959 55.000 0.00 0.00 0.00 3.86
1697 11670 0.902531 AACATACCACCTCCGTCCTG 59.097 55.000 0.00 0.00 0.00 3.86
1698 11671 1.652947 AAACATACCACCTCCGTCCT 58.347 50.000 0.00 0.00 0.00 3.85
1699 11672 2.484742 AAAACATACCACCTCCGTCC 57.515 50.000 0.00 0.00 0.00 4.79
1724 11697 6.049149 CCTGGTAAGCTATCTCGATCAAAAA 58.951 40.000 0.00 0.00 0.00 1.94
1725 11698 5.601662 CCTGGTAAGCTATCTCGATCAAAA 58.398 41.667 0.00 0.00 0.00 2.44
1726 11699 4.501571 GCCTGGTAAGCTATCTCGATCAAA 60.502 45.833 0.00 0.00 0.00 2.69
1727 11700 3.005897 GCCTGGTAAGCTATCTCGATCAA 59.994 47.826 0.00 0.00 0.00 2.57
1728 11701 2.558795 GCCTGGTAAGCTATCTCGATCA 59.441 50.000 0.00 0.00 0.00 2.92
1729 11702 2.823154 AGCCTGGTAAGCTATCTCGATC 59.177 50.000 0.00 0.00 39.29 3.69
1730 11703 2.883026 AGCCTGGTAAGCTATCTCGAT 58.117 47.619 0.00 0.00 39.29 3.59
1731 11704 2.362397 CAAGCCTGGTAAGCTATCTCGA 59.638 50.000 0.00 0.00 40.49 4.04
1732 11705 2.101582 ACAAGCCTGGTAAGCTATCTCG 59.898 50.000 0.00 0.00 40.49 4.04
1733 11706 3.723260 GACAAGCCTGGTAAGCTATCTC 58.277 50.000 0.00 0.00 40.49 2.75
1734 11707 2.101582 CGACAAGCCTGGTAAGCTATCT 59.898 50.000 0.00 0.00 40.49 1.98
1735 11708 2.159085 ACGACAAGCCTGGTAAGCTATC 60.159 50.000 0.00 0.00 40.49 2.08
1736 11709 1.831736 ACGACAAGCCTGGTAAGCTAT 59.168 47.619 0.00 0.00 40.49 2.97
1737 11710 1.203994 GACGACAAGCCTGGTAAGCTA 59.796 52.381 0.00 0.00 40.49 3.32
1738 11711 0.037232 GACGACAAGCCTGGTAAGCT 60.037 55.000 0.00 0.00 44.19 3.74
1739 11712 0.037232 AGACGACAAGCCTGGTAAGC 60.037 55.000 0.00 0.00 0.00 3.09
1740 11713 1.673033 CCAGACGACAAGCCTGGTAAG 60.673 57.143 0.00 0.00 41.81 2.34
1741 11714 0.320374 CCAGACGACAAGCCTGGTAA 59.680 55.000 0.00 0.00 41.81 2.85
1742 11715 1.972198 CCAGACGACAAGCCTGGTA 59.028 57.895 0.00 0.00 41.81 3.25
1743 11716 2.743718 CCAGACGACAAGCCTGGT 59.256 61.111 0.00 0.00 41.81 4.00
1745 11718 1.284982 CGAACCAGACGACAAGCCTG 61.285 60.000 0.00 0.00 0.00 4.85
1746 11719 1.006102 CGAACCAGACGACAAGCCT 60.006 57.895 0.00 0.00 0.00 4.58
1747 11720 0.038892 TACGAACCAGACGACAAGCC 60.039 55.000 0.00 0.00 34.70 4.35
1748 11721 1.992170 ATACGAACCAGACGACAAGC 58.008 50.000 0.00 0.00 34.70 4.01
1749 11722 6.057627 AGTATATACGAACCAGACGACAAG 57.942 41.667 7.23 0.00 34.70 3.16
1750 11723 5.008019 GGAGTATATACGAACCAGACGACAA 59.992 44.000 16.26 0.00 34.70 3.18
1751 11724 4.512944 GGAGTATATACGAACCAGACGACA 59.487 45.833 16.26 0.00 34.70 4.35
1752 11725 4.512944 TGGAGTATATACGAACCAGACGAC 59.487 45.833 18.45 0.00 34.70 4.34
1753 11726 4.707105 TGGAGTATATACGAACCAGACGA 58.293 43.478 18.45 3.91 34.70 4.20
1754 11727 4.613167 GCTGGAGTATATACGAACCAGACG 60.613 50.000 34.07 21.95 42.87 4.18
1755 11728 4.519730 AGCTGGAGTATATACGAACCAGAC 59.480 45.833 34.07 28.17 42.87 3.51
1756 11729 4.726583 AGCTGGAGTATATACGAACCAGA 58.273 43.478 34.07 16.43 42.87 3.86
1757 11730 6.151312 ACATAGCTGGAGTATATACGAACCAG 59.849 42.308 30.15 30.15 42.97 4.00
1758 11731 6.008331 ACATAGCTGGAGTATATACGAACCA 58.992 40.000 19.99 19.99 0.00 3.67
1759 11732 6.323266 CACATAGCTGGAGTATATACGAACC 58.677 44.000 7.23 12.01 0.00 3.62
1760 11733 5.800941 GCACATAGCTGGAGTATATACGAAC 59.199 44.000 7.23 2.95 41.15 3.95
1761 11734 5.950883 GCACATAGCTGGAGTATATACGAA 58.049 41.667 7.23 0.00 41.15 3.85
1762 11735 5.562506 GCACATAGCTGGAGTATATACGA 57.437 43.478 7.23 0.00 41.15 3.43
1789 11762 0.610232 AATCCCACACTTGCCTCTGC 60.610 55.000 0.00 0.00 38.26 4.26
1790 11763 1.171308 CAATCCCACACTTGCCTCTG 58.829 55.000 0.00 0.00 0.00 3.35
1791 11764 1.004044 CTCAATCCCACACTTGCCTCT 59.996 52.381 0.00 0.00 0.00 3.69
1792 11765 1.457346 CTCAATCCCACACTTGCCTC 58.543 55.000 0.00 0.00 0.00 4.70
1793 11766 0.610232 GCTCAATCCCACACTTGCCT 60.610 55.000 0.00 0.00 0.00 4.75
1794 11767 0.610232 AGCTCAATCCCACACTTGCC 60.610 55.000 0.00 0.00 0.00 4.52
1795 11768 2.113860 TAGCTCAATCCCACACTTGC 57.886 50.000 0.00 0.00 0.00 4.01
1796 11769 4.999950 GGATATAGCTCAATCCCACACTTG 59.000 45.833 13.90 0.00 36.44 3.16
1797 11770 4.910304 AGGATATAGCTCAATCCCACACTT 59.090 41.667 19.02 2.36 42.32 3.16
1798 11771 4.497516 AGGATATAGCTCAATCCCACACT 58.502 43.478 19.02 2.94 42.32 3.55
1799 11772 4.899352 AGGATATAGCTCAATCCCACAC 57.101 45.455 19.02 0.35 42.32 3.82
1800 11773 5.402630 TGTAGGATATAGCTCAATCCCACA 58.597 41.667 18.46 18.46 42.32 4.17
1801 11774 5.482175 ACTGTAGGATATAGCTCAATCCCAC 59.518 44.000 19.02 16.88 42.32 4.61
1802 11775 5.655394 ACTGTAGGATATAGCTCAATCCCA 58.345 41.667 19.02 12.22 42.32 4.37
1803 11776 7.906199 ATACTGTAGGATATAGCTCAATCCC 57.094 40.000 19.02 9.10 42.32 3.85
1935 11908 7.149973 GGCTAGGTTTCGTATGTGATTACATA 58.850 38.462 6.24 6.24 45.45 2.29
1937 11910 5.353938 GGCTAGGTTTCGTATGTGATTACA 58.646 41.667 0.00 0.00 41.89 2.41
1938 11911 4.748600 GGGCTAGGTTTCGTATGTGATTAC 59.251 45.833 0.00 0.00 0.00 1.89
1939 11912 4.202284 GGGGCTAGGTTTCGTATGTGATTA 60.202 45.833 0.00 0.00 0.00 1.75
1940 11913 3.433173 GGGGCTAGGTTTCGTATGTGATT 60.433 47.826 0.00 0.00 0.00 2.57
1941 11914 2.104281 GGGGCTAGGTTTCGTATGTGAT 59.896 50.000 0.00 0.00 0.00 3.06
1942 11915 1.483415 GGGGCTAGGTTTCGTATGTGA 59.517 52.381 0.00 0.00 0.00 3.58
1943 11916 1.474498 GGGGGCTAGGTTTCGTATGTG 60.474 57.143 0.00 0.00 0.00 3.21
1944 11917 0.835276 GGGGGCTAGGTTTCGTATGT 59.165 55.000 0.00 0.00 0.00 2.29
1945 11918 0.249741 CGGGGGCTAGGTTTCGTATG 60.250 60.000 0.00 0.00 0.00 2.39
1946 11919 2.036428 GCGGGGGCTAGGTTTCGTAT 62.036 60.000 0.00 0.00 0.00 3.06
1947 11920 2.724273 GCGGGGGCTAGGTTTCGTA 61.724 63.158 0.00 0.00 0.00 3.43
1948 11921 4.091939 GCGGGGGCTAGGTTTCGT 62.092 66.667 0.00 0.00 0.00 3.85
1950 11923 4.091939 ACGCGGGGGCTAGGTTTC 62.092 66.667 12.47 0.00 0.00 2.78
1951 11924 4.091939 GACGCGGGGGCTAGGTTT 62.092 66.667 12.47 0.00 0.00 3.27
2004 11977 4.554036 GAGGGCTAGCGGCAAGGG 62.554 72.222 9.00 0.00 44.01 3.95
2005 11978 4.554036 GGAGGGCTAGCGGCAAGG 62.554 72.222 9.00 0.00 44.01 3.61
2006 11979 3.453070 GAGGAGGGCTAGCGGCAAG 62.453 68.421 9.00 0.00 44.01 4.01
2007 11980 3.470888 GAGGAGGGCTAGCGGCAA 61.471 66.667 9.00 0.00 44.01 4.52
2010 11983 2.915137 GAGGAGGAGGGCTAGCGG 60.915 72.222 9.00 0.00 0.00 5.52
2011 11984 2.915137 GGAGGAGGAGGGCTAGCG 60.915 72.222 9.00 0.00 0.00 4.26
2012 11985 1.533033 GAGGAGGAGGAGGGCTAGC 60.533 68.421 6.04 6.04 0.00 3.42
2013 11986 1.155155 GGAGGAGGAGGAGGGCTAG 59.845 68.421 0.00 0.00 0.00 3.42
2014 11987 2.404750 GGGAGGAGGAGGAGGGCTA 61.405 68.421 0.00 0.00 0.00 3.93
2015 11988 3.773154 GGGAGGAGGAGGAGGGCT 61.773 72.222 0.00 0.00 0.00 5.19
2016 11989 4.890306 GGGGAGGAGGAGGAGGGC 62.890 77.778 0.00 0.00 0.00 5.19
2017 11990 2.613576 GAAGGGGAGGAGGAGGAGGG 62.614 70.000 0.00 0.00 0.00 4.30
2018 11991 1.074850 GAAGGGGAGGAGGAGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
2019 11992 1.074850 GGAAGGGGAGGAGGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
2020 11993 2.647949 GGGAAGGGGAGGAGGAGGA 61.648 68.421 0.00 0.00 0.00 3.71
2021 11994 2.040359 GGGAAGGGGAGGAGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
2022 11995 2.040359 GGGGAAGGGGAGGAGGAG 60.040 72.222 0.00 0.00 0.00 3.69
2023 11996 4.089757 CGGGGAAGGGGAGGAGGA 62.090 72.222 0.00 0.00 0.00 3.71
2094 12067 1.758906 CGAGGAGGGGAGAAGGACC 60.759 68.421 0.00 0.00 0.00 4.46
2095 12068 2.428085 GCGAGGAGGGGAGAAGGAC 61.428 68.421 0.00 0.00 0.00 3.85
2096 12069 2.042843 GCGAGGAGGGGAGAAGGA 60.043 66.667 0.00 0.00 0.00 3.36
2097 12070 3.532155 CGCGAGGAGGGGAGAAGG 61.532 72.222 0.00 0.00 0.00 3.46
2098 12071 2.286127 GAACGCGAGGAGGGGAGAAG 62.286 65.000 15.93 0.00 37.07 2.85
2099 12072 2.283676 AACGCGAGGAGGGGAGAA 60.284 61.111 15.93 0.00 37.07 2.87
2100 12073 2.754658 GAACGCGAGGAGGGGAGA 60.755 66.667 15.93 0.00 37.07 3.71
2101 12074 4.194720 CGAACGCGAGGAGGGGAG 62.195 72.222 15.93 0.00 40.82 4.30
2103 12076 4.796231 CACGAACGCGAGGAGGGG 62.796 72.222 15.93 0.00 41.64 4.79
2178 12151 3.646976 TCTAGATCGTCGCCGCCG 61.647 66.667 0.00 0.00 0.00 6.46
2179 12152 2.051166 GTCTAGATCGTCGCCGCC 60.051 66.667 0.00 0.00 0.00 6.13
2180 12153 2.425448 CGTCTAGATCGTCGCCGC 60.425 66.667 0.00 0.00 0.00 6.53
2181 12154 2.248724 CCGTCTAGATCGTCGCCG 59.751 66.667 0.00 0.00 0.00 6.46
2182 12155 2.051166 GCCGTCTAGATCGTCGCC 60.051 66.667 0.00 0.00 0.00 5.54
2183 12156 2.425448 CGCCGTCTAGATCGTCGC 60.425 66.667 0.00 1.46 0.00 5.19
2184 12157 2.248724 CCGCCGTCTAGATCGTCG 59.751 66.667 9.93 9.93 0.00 5.12
2185 12158 2.051166 GCCGCCGTCTAGATCGTC 60.051 66.667 0.00 0.00 0.00 4.20
2186 12159 3.950254 CGCCGCCGTCTAGATCGT 61.950 66.667 0.00 0.00 0.00 3.73
2187 12160 4.685026 CCGCCGCCGTCTAGATCG 62.685 72.222 0.00 1.64 0.00 3.69
2216 12189 4.101448 ACCGACCCATCTGCAGCC 62.101 66.667 9.47 0.00 0.00 4.85
2217 12190 2.821366 CACCGACCCATCTGCAGC 60.821 66.667 9.47 0.00 0.00 5.25
2218 12191 2.821366 GCACCGACCCATCTGCAG 60.821 66.667 7.63 7.63 0.00 4.41
2219 12192 4.408821 GGCACCGACCCATCTGCA 62.409 66.667 0.00 0.00 29.60 4.41
2221 12194 3.723235 CTCGGCACCGACCCATCTG 62.723 68.421 7.89 0.00 44.01 2.90
2222 12195 3.461773 CTCGGCACCGACCCATCT 61.462 66.667 7.89 0.00 44.01 2.90
2228 12201 4.664677 ACACAGCTCGGCACCGAC 62.665 66.667 7.89 5.68 44.01 4.79
2229 12202 4.662961 CACACAGCTCGGCACCGA 62.663 66.667 11.90 11.90 46.87 4.69
2251 12224 4.803426 GAGGAGACCCGCACGCAG 62.803 72.222 0.00 0.00 37.58 5.18
2254 12227 4.778415 CACGAGGAGACCCGCACG 62.778 72.222 0.00 0.00 37.58 5.34
2255 12228 4.436998 CCACGAGGAGACCCGCAC 62.437 72.222 0.00 0.00 36.89 5.34
2336 12309 2.328099 GCACGAGAAGCCACCTTGG 61.328 63.158 0.00 0.00 41.55 3.61
2337 12310 2.671177 CGCACGAGAAGCCACCTTG 61.671 63.158 0.00 0.00 0.00 3.61
2338 12311 2.357517 CGCACGAGAAGCCACCTT 60.358 61.111 0.00 0.00 0.00 3.50
2339 12312 3.288308 CTCGCACGAGAAGCCACCT 62.288 63.158 14.73 0.00 44.53 4.00
2340 12313 2.209064 TACTCGCACGAGAAGCCACC 62.209 60.000 25.53 0.00 44.53 4.61
2341 12314 0.179134 ATACTCGCACGAGAAGCCAC 60.179 55.000 25.53 0.00 44.53 5.01
2342 12315 0.179137 CATACTCGCACGAGAAGCCA 60.179 55.000 25.53 6.35 44.53 4.75
2343 12316 1.483424 GCATACTCGCACGAGAAGCC 61.483 60.000 25.53 8.12 44.53 4.35
2344 12317 1.802300 CGCATACTCGCACGAGAAGC 61.802 60.000 25.53 21.38 44.53 3.86
2345 12318 1.202973 CCGCATACTCGCACGAGAAG 61.203 60.000 25.53 14.84 44.53 2.85
2346 12319 1.226575 CCGCATACTCGCACGAGAA 60.227 57.895 25.53 0.00 44.53 2.87
2347 12320 2.048312 CTCCGCATACTCGCACGAGA 62.048 60.000 25.53 10.32 44.53 4.04
2348 12321 1.655654 CTCCGCATACTCGCACGAG 60.656 63.158 17.97 17.97 46.91 4.18
2349 12322 1.650314 TTCTCCGCATACTCGCACGA 61.650 55.000 0.00 0.00 0.00 4.35
2350 12323 1.202973 CTTCTCCGCATACTCGCACG 61.203 60.000 0.00 0.00 0.00 5.34
2351 12324 0.100682 TCTTCTCCGCATACTCGCAC 59.899 55.000 0.00 0.00 0.00 5.34
2352 12325 0.382158 CTCTTCTCCGCATACTCGCA 59.618 55.000 0.00 0.00 0.00 5.10
2353 12326 0.318275 CCTCTTCTCCGCATACTCGC 60.318 60.000 0.00 0.00 0.00 5.03
2354 12327 1.025812 ACCTCTTCTCCGCATACTCG 58.974 55.000 0.00 0.00 0.00 4.18
2355 12328 2.815478 CAACCTCTTCTCCGCATACTC 58.185 52.381 0.00 0.00 0.00 2.59
2356 12329 1.134670 GCAACCTCTTCTCCGCATACT 60.135 52.381 0.00 0.00 0.00 2.12
2357 12330 1.291132 GCAACCTCTTCTCCGCATAC 58.709 55.000 0.00 0.00 0.00 2.39
2358 12331 0.179111 CGCAACCTCTTCTCCGCATA 60.179 55.000 0.00 0.00 0.00 3.14
2359 12332 1.448540 CGCAACCTCTTCTCCGCAT 60.449 57.895 0.00 0.00 0.00 4.73
2360 12333 2.048222 CGCAACCTCTTCTCCGCA 60.048 61.111 0.00 0.00 0.00 5.69
2361 12334 2.815647 CCGCAACCTCTTCTCCGC 60.816 66.667 0.00 0.00 0.00 5.54
2362 12335 2.815647 GCCGCAACCTCTTCTCCG 60.816 66.667 0.00 0.00 0.00 4.63
2363 12336 2.815647 CGCCGCAACCTCTTCTCC 60.816 66.667 0.00 0.00 0.00 3.71
2364 12337 2.048127 ACGCCGCAACCTCTTCTC 60.048 61.111 0.00 0.00 0.00 2.87
2365 12338 2.357517 CACGCCGCAACCTCTTCT 60.358 61.111 0.00 0.00 0.00 2.85
2366 12339 2.665185 ACACGCCGCAACCTCTTC 60.665 61.111 0.00 0.00 0.00 2.87
2367 12340 2.972505 CACACGCCGCAACCTCTT 60.973 61.111 0.00 0.00 0.00 2.85
2368 12341 4.235762 ACACACGCCGCAACCTCT 62.236 61.111 0.00 0.00 0.00 3.69
2369 12342 3.712881 GACACACGCCGCAACCTC 61.713 66.667 0.00 0.00 0.00 3.85
2372 12345 3.712881 GAGGACACACGCCGCAAC 61.713 66.667 0.00 0.00 0.00 4.17
2378 12351 4.436998 CTCCCCGAGGACACACGC 62.437 72.222 0.00 0.00 37.19 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.