Multiple sequence alignment - TraesCS6A01G278300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G278300 chr6A 100.000 4530 0 0 1 4530 506231378 506235907 0.000000e+00 8366.0
1 TraesCS6A01G278300 chr6B 94.090 2572 86 25 677 3244 550073936 550076445 0.000000e+00 3847.0
2 TraesCS6A01G278300 chr6B 96.493 1169 34 4 3368 4530 550076444 550077611 0.000000e+00 1925.0
3 TraesCS6A01G278300 chr6B 90.271 627 52 7 1 626 550053427 550054045 0.000000e+00 811.0
4 TraesCS6A01G278300 chr6B 93.836 146 7 2 3228 3372 15392080 15392224 7.630000e-53 219.0
5 TraesCS6A01G278300 chr6D 96.886 1156 34 2 3368 4521 365277731 365278886 0.000000e+00 1934.0
6 TraesCS6A01G278300 chr6D 91.063 1421 79 26 630 2044 365275234 365276612 0.000000e+00 1877.0
7 TraesCS6A01G278300 chr6D 94.458 830 31 8 2415 3244 365276918 365277732 0.000000e+00 1264.0
8 TraesCS6A01G278300 chr6D 92.147 624 41 4 3 626 365268494 365269109 0.000000e+00 874.0
9 TraesCS6A01G278300 chr6D 92.989 271 16 3 2027 2296 365276626 365276894 4.250000e-105 392.0
10 TraesCS6A01G278300 chr6D 92.157 153 9 2 3220 3371 312104223 312104073 3.550000e-51 213.0
11 TraesCS6A01G278300 chr6D 84.138 145 15 7 94 235 59711701 59711840 2.840000e-27 134.0
12 TraesCS6A01G278300 chr2D 98.462 130 2 0 3240 3369 340252739 340252868 3.520000e-56 230.0
13 TraesCS6A01G278300 chr2D 94.366 142 7 1 3229 3370 536091166 536091026 2.740000e-52 217.0
14 TraesCS6A01G278300 chr2D 95.455 88 4 0 2292 2379 643235908 643235821 1.700000e-29 141.0
15 TraesCS6A01G278300 chr2D 92.553 94 6 1 2290 2383 382456026 382455934 2.840000e-27 134.0
16 TraesCS6A01G278300 chr7D 97.727 132 2 1 3243 3373 251036050 251035919 4.560000e-55 226.0
17 TraesCS6A01G278300 chr7D 80.982 163 29 2 1087 1248 507420393 507420554 1.320000e-25 128.0
18 TraesCS6A01G278300 chr2B 96.296 135 5 0 3237 3371 62423308 62423442 5.900000e-54 222.0
19 TraesCS6A01G278300 chr2B 91.919 99 8 0 2281 2379 354879114 354879212 6.110000e-29 139.0
20 TraesCS6A01G278300 chr3D 95.000 140 5 2 3231 3369 280387112 280386974 7.630000e-53 219.0
21 TraesCS6A01G278300 chr3D 79.412 238 40 6 1 235 41582094 41582325 4.690000e-35 159.0
22 TraesCS6A01G278300 chr7A 93.750 144 8 1 3226 3369 543341027 543341169 9.870000e-52 215.0
23 TraesCS6A01G278300 chr7A 79.255 188 34 4 1087 1273 577223165 577223348 4.760000e-25 126.0
24 TraesCS6A01G278300 chr7A 82.075 106 11 5 1180 1284 93143318 93143416 2.900000e-12 84.2
25 TraesCS6A01G278300 chr7A 86.957 69 9 0 1180 1248 94035666 94035734 1.350000e-10 78.7
26 TraesCS6A01G278300 chr7B 92.617 149 9 2 3223 3369 705686396 705686248 3.550000e-51 213.0
27 TraesCS6A01G278300 chr7B 81.098 164 27 4 1087 1248 535822661 535822822 1.320000e-25 128.0
28 TraesCS6A01G278300 chr4A 82.353 238 33 6 1 235 150832372 150832603 9.940000e-47 198.0
29 TraesCS6A01G278300 chr4A 93.478 92 6 0 2285 2376 285485360 285485451 2.200000e-28 137.0
30 TraesCS6A01G278300 chr4A 87.324 71 5 4 1180 1248 613941637 613941705 1.350000e-10 78.7
31 TraesCS6A01G278300 chr2A 95.506 89 4 0 2291 2379 722077289 722077201 4.720000e-30 143.0
32 TraesCS6A01G278300 chr3B 92.553 94 7 0 2289 2382 372246294 372246387 7.900000e-28 135.0
33 TraesCS6A01G278300 chr1A 87.179 117 14 1 96 211 580102031 580102147 1.020000e-26 132.0
34 TraesCS6A01G278300 chr1A 81.905 105 13 3 1180 1284 5950110 5950208 2.900000e-12 84.2
35 TraesCS6A01G278300 chrUn 88.785 107 9 3 2292 2398 3346482 3346379 1.320000e-25 128.0
36 TraesCS6A01G278300 chr5A 87.500 112 11 3 2274 2383 42114169 42114059 4.760000e-25 126.0
37 TraesCS6A01G278300 chr5B 83.471 121 15 5 2261 2379 8544033 8543916 1.720000e-19 108.0
38 TraesCS6A01G278300 chr3A 82.524 103 12 3 1182 1284 681734640 681734736 8.070000e-13 86.1
39 TraesCS6A01G278300 chr5D 84.416 77 9 2 3325 3399 351406504 351406579 6.290000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G278300 chr6A 506231378 506235907 4529 False 8366.00 8366 100.0000 1 4530 1 chr6A.!!$F1 4529
1 TraesCS6A01G278300 chr6B 550073936 550077611 3675 False 2886.00 3847 95.2915 677 4530 2 chr6B.!!$F3 3853
2 TraesCS6A01G278300 chr6B 550053427 550054045 618 False 811.00 811 90.2710 1 626 1 chr6B.!!$F2 625
3 TraesCS6A01G278300 chr6D 365275234 365278886 3652 False 1366.75 1934 93.8490 630 4521 4 chr6D.!!$F3 3891
4 TraesCS6A01G278300 chr6D 365268494 365269109 615 False 874.00 874 92.1470 3 626 1 chr6D.!!$F2 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 435 0.103937 GTGAATGCGGGAGAGAGAGG 59.896 60.0 0.00 0.00 0.00 3.69 F
478 479 0.108281 TGACGTGACGGTCAAAACCA 60.108 50.0 13.23 6.09 46.86 3.67 F
489 490 0.187117 TCAAAACCAGGCCATGTGGA 59.813 50.0 16.13 3.68 38.57 4.02 F
490 491 0.318120 CAAAACCAGGCCATGTGGAC 59.682 55.0 16.13 0.00 46.16 4.02 F
498 499 0.808755 GGCCATGTGGACGGTTTTAG 59.191 55.0 0.00 0.00 37.39 1.85 F
1909 1915 1.028868 CAGCTGGCTCCTACTTTGGC 61.029 60.0 5.57 0.00 0.00 4.52 F
2591 2630 0.263468 TATCATCCGTCCCACTCCCA 59.737 55.0 0.00 0.00 0.00 4.37 F
3369 3411 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.0 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1271 0.034896 GCGAAACAGTGGAGGAGGAA 59.965 55.000 0.00 0.00 0.00 3.36 R
1775 1780 0.977395 CCCTAGCCCTTTCCTATCCG 59.023 60.000 0.00 0.00 0.00 4.18 R
1984 1990 1.229690 TGGAACCGGGAATCCCTGA 60.230 57.895 16.94 0.00 42.67 3.86 R
2473 2512 3.431673 TTGTGCCCAAGTGATACATGA 57.568 42.857 0.00 0.00 0.00 3.07 R
2519 2558 6.788598 ATGCATAATTTACACAATGTGGGA 57.211 33.333 18.37 2.09 37.94 4.37 R
3353 3395 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37 R
3478 3521 0.605589 GTGAGTGGGCTGGTACAACC 60.606 60.000 0.00 0.00 45.32 3.77 R
4369 4418 2.235155 TCAATAGGCCTAGTGCGAAACA 59.765 45.455 30.87 13.34 42.61 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.638665 AGCATCCCTCCATGATATCCATA 58.361 43.478 0.00 0.00 33.31 2.74
63 64 2.978010 CACACTCCACCGCCAACC 60.978 66.667 0.00 0.00 0.00 3.77
64 65 4.265056 ACACTCCACCGCCAACCC 62.265 66.667 0.00 0.00 0.00 4.11
172 173 0.250295 CTTGAACTGGCCGAGGTTGA 60.250 55.000 12.24 2.74 0.00 3.18
255 256 1.153249 CACAGACAACCACCACCGT 60.153 57.895 0.00 0.00 0.00 4.83
292 293 2.610546 TCCTTGCCCAGCTAGCCA 60.611 61.111 12.13 0.00 30.63 4.75
303 304 2.434884 CTAGCCACCACCGCACAG 60.435 66.667 0.00 0.00 0.00 3.66
304 305 4.697756 TAGCCACCACCGCACAGC 62.698 66.667 0.00 0.00 0.00 4.40
316 317 4.275508 CACAGCCACCACCCTGCT 62.276 66.667 0.00 0.00 35.25 4.24
317 318 3.958860 ACAGCCACCACCCTGCTC 61.959 66.667 0.00 0.00 31.77 4.26
318 319 3.957586 CAGCCACCACCCTGCTCA 61.958 66.667 0.00 0.00 31.77 4.26
319 320 3.644606 AGCCACCACCCTGCTCAG 61.645 66.667 0.00 0.00 0.00 3.35
321 322 4.729918 CCACCACCCTGCTCAGCC 62.730 72.222 0.00 0.00 0.00 4.85
322 323 3.957586 CACCACCCTGCTCAGCCA 61.958 66.667 0.00 0.00 0.00 4.75
323 324 3.644606 ACCACCCTGCTCAGCCAG 61.645 66.667 0.00 0.00 0.00 4.85
332 333 2.949106 CTCAGCCAGCAACCAACG 59.051 61.111 0.00 0.00 0.00 4.10
333 334 3.259425 CTCAGCCAGCAACCAACGC 62.259 63.158 0.00 0.00 0.00 4.84
334 335 4.688419 CAGCCAGCAACCAACGCG 62.688 66.667 3.53 3.53 0.00 6.01
340 341 4.599434 GCAACCAACGCGCGTGAA 62.599 61.111 38.44 0.00 0.00 3.18
341 342 2.251075 CAACCAACGCGCGTGAAT 59.749 55.556 38.44 21.60 0.00 2.57
342 343 1.792057 CAACCAACGCGCGTGAATC 60.792 57.895 38.44 0.00 0.00 2.52
343 344 1.959226 AACCAACGCGCGTGAATCT 60.959 52.632 38.44 18.48 0.00 2.40
344 345 1.897398 AACCAACGCGCGTGAATCTC 61.897 55.000 38.44 0.00 0.00 2.75
345 346 2.395690 CAACGCGCGTGAATCTCC 59.604 61.111 38.44 0.00 0.00 3.71
346 347 2.048597 AACGCGCGTGAATCTCCA 60.049 55.556 38.44 0.00 0.00 3.86
347 348 2.380410 AACGCGCGTGAATCTCCAC 61.380 57.895 38.44 0.00 0.00 4.02
348 349 3.554692 CGCGCGTGAATCTCCACC 61.555 66.667 24.19 0.00 33.67 4.61
349 350 3.554692 GCGCGTGAATCTCCACCG 61.555 66.667 8.43 0.00 35.42 4.94
350 351 2.885644 CGCGTGAATCTCCACCGG 60.886 66.667 0.00 0.00 33.67 5.28
351 352 2.511600 GCGTGAATCTCCACCGGG 60.512 66.667 6.32 0.00 33.67 5.73
352 353 2.511600 CGTGAATCTCCACCGGGC 60.512 66.667 6.32 0.00 33.67 6.13
353 354 2.124695 GTGAATCTCCACCGGGCC 60.125 66.667 6.32 0.00 0.00 5.80
354 355 2.609299 TGAATCTCCACCGGGCCA 60.609 61.111 6.32 0.00 0.00 5.36
355 356 2.000701 TGAATCTCCACCGGGCCAT 61.001 57.895 6.32 0.00 0.00 4.40
356 357 1.526917 GAATCTCCACCGGGCCATG 60.527 63.158 6.32 0.12 0.00 3.66
357 358 3.721370 AATCTCCACCGGGCCATGC 62.721 63.158 6.32 0.00 0.00 4.06
359 360 4.864334 CTCCACCGGGCCATGCTC 62.864 72.222 6.32 0.00 0.00 4.26
364 365 4.431131 CCGGGCCATGCTCCACTT 62.431 66.667 4.39 0.00 0.00 3.16
365 366 2.361610 CGGGCCATGCTCCACTTT 60.362 61.111 4.39 0.00 0.00 2.66
366 367 1.978617 CGGGCCATGCTCCACTTTT 60.979 57.895 4.39 0.00 0.00 2.27
367 368 1.893062 GGGCCATGCTCCACTTTTC 59.107 57.895 4.39 0.00 0.00 2.29
368 369 0.899717 GGGCCATGCTCCACTTTTCA 60.900 55.000 4.39 0.00 0.00 2.69
369 370 0.529378 GGCCATGCTCCACTTTTCAG 59.471 55.000 0.00 0.00 0.00 3.02
370 371 1.538047 GCCATGCTCCACTTTTCAGA 58.462 50.000 0.00 0.00 0.00 3.27
371 372 1.200948 GCCATGCTCCACTTTTCAGAC 59.799 52.381 0.00 0.00 0.00 3.51
372 373 2.787994 CCATGCTCCACTTTTCAGACT 58.212 47.619 0.00 0.00 0.00 3.24
373 374 2.486982 CCATGCTCCACTTTTCAGACTG 59.513 50.000 0.00 0.00 0.00 3.51
374 375 3.144506 CATGCTCCACTTTTCAGACTGT 58.855 45.455 1.59 0.00 0.00 3.55
375 376 2.838736 TGCTCCACTTTTCAGACTGTC 58.161 47.619 1.59 0.00 0.00 3.51
376 377 1.795286 GCTCCACTTTTCAGACTGTCG 59.205 52.381 1.59 0.00 0.00 4.35
377 378 1.795286 CTCCACTTTTCAGACTGTCGC 59.205 52.381 1.59 0.00 0.00 5.19
378 379 0.868406 CCACTTTTCAGACTGTCGCC 59.132 55.000 1.59 0.00 0.00 5.54
379 380 0.508641 CACTTTTCAGACTGTCGCCG 59.491 55.000 1.59 0.00 0.00 6.46
380 381 1.222115 ACTTTTCAGACTGTCGCCGC 61.222 55.000 1.59 0.00 0.00 6.53
381 382 0.946221 CTTTTCAGACTGTCGCCGCT 60.946 55.000 1.59 0.00 0.00 5.52
382 383 1.221466 TTTTCAGACTGTCGCCGCTG 61.221 55.000 1.59 0.00 0.00 5.18
383 384 4.724602 TCAGACTGTCGCCGCTGC 62.725 66.667 1.59 0.00 0.00 5.25
384 385 4.731612 CAGACTGTCGCCGCTGCT 62.732 66.667 1.52 0.00 34.43 4.24
385 386 4.427661 AGACTGTCGCCGCTGCTC 62.428 66.667 1.52 0.00 34.43 4.26
386 387 4.427661 GACTGTCGCCGCTGCTCT 62.428 66.667 0.00 0.00 34.43 4.09
387 388 3.052620 GACTGTCGCCGCTGCTCTA 62.053 63.158 0.00 0.00 34.43 2.43
388 389 2.278466 CTGTCGCCGCTGCTCTAG 60.278 66.667 0.00 0.00 34.43 2.43
389 390 3.764810 CTGTCGCCGCTGCTCTAGG 62.765 68.421 0.00 0.00 34.43 3.02
390 391 4.577246 GTCGCCGCTGCTCTAGGG 62.577 72.222 0.00 0.00 38.97 3.53
392 393 4.148825 CGCCGCTGCTCTAGGGTT 62.149 66.667 0.00 0.00 37.64 4.11
393 394 2.269241 GCCGCTGCTCTAGGGTTT 59.731 61.111 0.00 0.00 37.64 3.27
394 395 1.377333 GCCGCTGCTCTAGGGTTTT 60.377 57.895 0.00 0.00 37.64 2.43
395 396 0.960861 GCCGCTGCTCTAGGGTTTTT 60.961 55.000 0.00 0.00 37.64 1.94
396 397 0.804989 CCGCTGCTCTAGGGTTTTTG 59.195 55.000 0.00 0.00 37.64 2.44
397 398 0.169009 CGCTGCTCTAGGGTTTTTGC 59.831 55.000 0.00 0.00 34.82 3.68
398 399 0.169009 GCTGCTCTAGGGTTTTTGCG 59.831 55.000 0.00 0.00 0.00 4.85
399 400 1.808411 CTGCTCTAGGGTTTTTGCGA 58.192 50.000 0.00 0.00 0.00 5.10
400 401 1.734465 CTGCTCTAGGGTTTTTGCGAG 59.266 52.381 0.00 0.00 0.00 5.03
401 402 1.346395 TGCTCTAGGGTTTTTGCGAGA 59.654 47.619 0.00 0.00 0.00 4.04
402 403 2.027192 TGCTCTAGGGTTTTTGCGAGAT 60.027 45.455 0.00 0.00 0.00 2.75
403 404 3.196901 TGCTCTAGGGTTTTTGCGAGATA 59.803 43.478 0.00 0.00 0.00 1.98
404 405 4.189231 GCTCTAGGGTTTTTGCGAGATAA 58.811 43.478 0.00 0.00 0.00 1.75
405 406 4.634443 GCTCTAGGGTTTTTGCGAGATAAA 59.366 41.667 0.00 0.00 0.00 1.40
406 407 5.220681 GCTCTAGGGTTTTTGCGAGATAAAG 60.221 44.000 0.00 0.00 0.00 1.85
407 408 6.045072 TCTAGGGTTTTTGCGAGATAAAGA 57.955 37.500 0.00 0.00 0.00 2.52
408 409 6.106673 TCTAGGGTTTTTGCGAGATAAAGAG 58.893 40.000 0.00 0.00 0.00 2.85
409 410 4.010349 AGGGTTTTTGCGAGATAAAGAGG 58.990 43.478 0.00 0.00 0.00 3.69
410 411 4.007659 GGGTTTTTGCGAGATAAAGAGGA 58.992 43.478 0.00 0.00 0.00 3.71
411 412 4.640647 GGGTTTTTGCGAGATAAAGAGGAT 59.359 41.667 0.00 0.00 0.00 3.24
412 413 5.220873 GGGTTTTTGCGAGATAAAGAGGATC 60.221 44.000 0.00 0.00 0.00 3.36
413 414 5.493735 GTTTTTGCGAGATAAAGAGGATCG 58.506 41.667 0.00 0.00 42.67 3.69
414 415 4.649088 TTTGCGAGATAAAGAGGATCGA 57.351 40.909 0.00 0.00 42.67 3.59
415 416 3.906014 TGCGAGATAAAGAGGATCGAG 57.094 47.619 0.00 0.00 42.67 4.04
416 417 3.215151 TGCGAGATAAAGAGGATCGAGT 58.785 45.455 0.00 0.00 42.67 4.18
417 418 3.003793 TGCGAGATAAAGAGGATCGAGTG 59.996 47.826 0.00 0.00 42.67 3.51
418 419 3.251245 GCGAGATAAAGAGGATCGAGTGA 59.749 47.826 0.00 0.00 42.67 3.41
419 420 4.261238 GCGAGATAAAGAGGATCGAGTGAA 60.261 45.833 0.00 0.00 42.67 3.18
420 421 5.563867 GCGAGATAAAGAGGATCGAGTGAAT 60.564 44.000 0.00 0.00 42.67 2.57
421 422 5.855925 CGAGATAAAGAGGATCGAGTGAATG 59.144 44.000 0.00 0.00 42.67 2.67
422 423 5.537188 AGATAAAGAGGATCGAGTGAATGC 58.463 41.667 0.00 0.00 42.67 3.56
423 424 2.215907 AAGAGGATCGAGTGAATGCG 57.784 50.000 0.00 0.00 42.67 4.73
424 425 0.387202 AGAGGATCGAGTGAATGCGG 59.613 55.000 0.00 0.00 42.67 5.69
425 426 0.598680 GAGGATCGAGTGAATGCGGG 60.599 60.000 0.00 0.00 0.00 6.13
426 427 1.043116 AGGATCGAGTGAATGCGGGA 61.043 55.000 0.00 0.00 0.00 5.14
427 428 0.598680 GGATCGAGTGAATGCGGGAG 60.599 60.000 0.00 0.00 0.00 4.30
428 429 0.385751 GATCGAGTGAATGCGGGAGA 59.614 55.000 0.00 0.00 0.00 3.71
429 430 0.387202 ATCGAGTGAATGCGGGAGAG 59.613 55.000 0.00 0.00 0.00 3.20
430 431 0.679960 TCGAGTGAATGCGGGAGAGA 60.680 55.000 0.00 0.00 0.00 3.10
431 432 0.248825 CGAGTGAATGCGGGAGAGAG 60.249 60.000 0.00 0.00 0.00 3.20
432 433 1.107114 GAGTGAATGCGGGAGAGAGA 58.893 55.000 0.00 0.00 0.00 3.10
433 434 1.066908 GAGTGAATGCGGGAGAGAGAG 59.933 57.143 0.00 0.00 0.00 3.20
434 435 0.103937 GTGAATGCGGGAGAGAGAGG 59.896 60.000 0.00 0.00 0.00 3.69
435 436 1.068921 GAATGCGGGAGAGAGAGGC 59.931 63.158 0.00 0.00 0.00 4.70
436 437 1.680522 GAATGCGGGAGAGAGAGGCA 61.681 60.000 0.00 0.00 38.09 4.75
437 438 1.684386 AATGCGGGAGAGAGAGGCAG 61.684 60.000 0.00 0.00 37.01 4.85
438 439 4.219999 GCGGGAGAGAGAGGCAGC 62.220 72.222 0.00 0.00 0.00 5.25
439 440 3.898509 CGGGAGAGAGAGGCAGCG 61.899 72.222 0.00 0.00 0.00 5.18
440 441 2.441164 GGGAGAGAGAGGCAGCGA 60.441 66.667 0.00 0.00 0.00 4.93
441 442 2.489275 GGGAGAGAGAGGCAGCGAG 61.489 68.421 0.00 0.00 0.00 5.03
442 443 2.489275 GGAGAGAGAGGCAGCGAGG 61.489 68.421 0.00 0.00 0.00 4.63
443 444 3.137637 GAGAGAGAGGCAGCGAGGC 62.138 68.421 0.00 0.00 44.61 4.70
460 461 2.859992 GCCCTCAGCCACTTAAGTG 58.140 57.895 25.79 25.79 45.23 3.16
471 472 2.412421 ACTTAAGTGACGTGACGGTC 57.588 50.000 10.66 0.00 37.45 4.79
472 473 1.677576 ACTTAAGTGACGTGACGGTCA 59.322 47.619 10.66 6.76 44.25 4.02
477 478 2.680429 TGACGTGACGGTCAAAACC 58.320 52.632 13.23 0.00 43.55 3.27
478 479 0.108281 TGACGTGACGGTCAAAACCA 60.108 50.000 13.23 6.09 46.86 3.67
479 480 0.580104 GACGTGACGGTCAAAACCAG 59.420 55.000 13.23 3.34 46.86 4.00
480 481 0.812412 ACGTGACGGTCAAAACCAGG 60.812 55.000 13.23 0.00 46.86 4.45
481 482 1.652563 GTGACGGTCAAAACCAGGC 59.347 57.895 13.23 0.00 46.86 4.85
482 483 1.527380 TGACGGTCAAAACCAGGCC 60.527 57.895 8.68 0.00 46.86 5.19
483 484 1.527380 GACGGTCAAAACCAGGCCA 60.527 57.895 5.01 0.00 46.86 5.36
484 485 0.893727 GACGGTCAAAACCAGGCCAT 60.894 55.000 5.01 0.00 46.86 4.40
485 486 1.178534 ACGGTCAAAACCAGGCCATG 61.179 55.000 5.01 0.00 46.86 3.66
486 487 1.178534 CGGTCAAAACCAGGCCATGT 61.179 55.000 5.01 0.00 46.86 3.21
487 488 0.318120 GGTCAAAACCAGGCCATGTG 59.682 55.000 5.01 0.00 45.68 3.21
488 489 0.318120 GTCAAAACCAGGCCATGTGG 59.682 55.000 5.01 6.77 41.30 4.17
489 490 0.187117 TCAAAACCAGGCCATGTGGA 59.813 50.000 16.13 3.68 38.57 4.02
490 491 0.318120 CAAAACCAGGCCATGTGGAC 59.682 55.000 16.13 0.00 46.16 4.02
496 497 3.771978 GGCCATGTGGACGGTTTT 58.228 55.556 0.00 0.00 37.39 2.43
497 498 2.949826 GGCCATGTGGACGGTTTTA 58.050 52.632 0.00 0.00 37.39 1.52
498 499 0.808755 GGCCATGTGGACGGTTTTAG 59.191 55.000 0.00 0.00 37.39 1.85
499 500 1.530323 GCCATGTGGACGGTTTTAGT 58.470 50.000 2.55 0.00 37.39 2.24
500 501 1.467342 GCCATGTGGACGGTTTTAGTC 59.533 52.381 2.55 0.00 37.39 2.59
501 502 2.773487 CCATGTGGACGGTTTTAGTCA 58.227 47.619 0.00 0.00 40.20 3.41
502 503 3.142951 CCATGTGGACGGTTTTAGTCAA 58.857 45.455 0.00 0.00 40.20 3.18
503 504 3.566322 CCATGTGGACGGTTTTAGTCAAA 59.434 43.478 0.00 0.00 40.20 2.69
504 505 4.533222 CATGTGGACGGTTTTAGTCAAAC 58.467 43.478 0.00 0.00 43.78 2.93
516 517 7.694388 GTTTTAGTCAAACCAGGTTCAAATC 57.306 36.000 4.93 0.00 39.22 2.17
517 518 7.262048 GTTTTAGTCAAACCAGGTTCAAATCA 58.738 34.615 4.93 0.00 39.22 2.57
518 519 7.595819 TTTAGTCAAACCAGGTTCAAATCAT 57.404 32.000 4.93 0.00 0.00 2.45
519 520 8.698973 TTTAGTCAAACCAGGTTCAAATCATA 57.301 30.769 4.93 0.00 0.00 2.15
520 521 6.575162 AGTCAAACCAGGTTCAAATCATAC 57.425 37.500 4.93 0.00 0.00 2.39
521 522 6.306987 AGTCAAACCAGGTTCAAATCATACT 58.693 36.000 4.93 0.00 0.00 2.12
522 523 7.458397 AGTCAAACCAGGTTCAAATCATACTA 58.542 34.615 4.93 0.00 0.00 1.82
523 524 7.942341 AGTCAAACCAGGTTCAAATCATACTAA 59.058 33.333 4.93 0.00 0.00 2.24
524 525 8.573035 GTCAAACCAGGTTCAAATCATACTAAA 58.427 33.333 4.93 0.00 0.00 1.85
525 526 9.137459 TCAAACCAGGTTCAAATCATACTAAAA 57.863 29.630 4.93 0.00 0.00 1.52
526 527 9.191995 CAAACCAGGTTCAAATCATACTAAAAC 57.808 33.333 4.93 0.00 0.00 2.43
527 528 7.462571 ACCAGGTTCAAATCATACTAAAACC 57.537 36.000 0.00 0.00 35.92 3.27
528 529 7.007723 ACCAGGTTCAAATCATACTAAAACCA 58.992 34.615 0.00 0.00 37.68 3.67
529 530 7.039993 ACCAGGTTCAAATCATACTAAAACCAC 60.040 37.037 0.00 0.00 37.68 4.16
530 531 7.176690 CCAGGTTCAAATCATACTAAAACCACT 59.823 37.037 0.00 0.00 37.68 4.00
531 532 8.023128 CAGGTTCAAATCATACTAAAACCACTG 58.977 37.037 0.00 0.00 37.68 3.66
532 533 7.724061 AGGTTCAAATCATACTAAAACCACTGT 59.276 33.333 0.00 0.00 37.68 3.55
533 534 9.005777 GGTTCAAATCATACTAAAACCACTGTA 57.994 33.333 0.00 0.00 35.78 2.74
544 545 8.475331 ACTAAAACCACTGTAAATGATACGAG 57.525 34.615 0.00 0.00 0.00 4.18
545 546 6.737254 AAAACCACTGTAAATGATACGAGG 57.263 37.500 0.00 0.00 0.00 4.63
546 547 4.402056 ACCACTGTAAATGATACGAGGG 57.598 45.455 0.00 0.00 0.00 4.30
547 548 4.028131 ACCACTGTAAATGATACGAGGGA 58.972 43.478 0.00 0.00 0.00 4.20
548 549 4.142004 ACCACTGTAAATGATACGAGGGAC 60.142 45.833 0.00 0.00 0.00 4.46
550 551 5.301045 CCACTGTAAATGATACGAGGGACTA 59.699 44.000 0.00 0.00 41.55 2.59
551 552 6.183360 CCACTGTAAATGATACGAGGGACTAA 60.183 42.308 0.00 0.00 41.55 2.24
552 553 7.262772 CACTGTAAATGATACGAGGGACTAAA 58.737 38.462 0.00 0.00 41.55 1.85
553 554 7.762615 CACTGTAAATGATACGAGGGACTAAAA 59.237 37.037 0.00 0.00 41.55 1.52
554 555 7.980099 ACTGTAAATGATACGAGGGACTAAAAG 59.020 37.037 0.00 0.00 41.55 2.27
555 556 7.844009 TGTAAATGATACGAGGGACTAAAAGT 58.156 34.615 0.00 0.00 41.55 2.66
556 557 8.970020 TGTAAATGATACGAGGGACTAAAAGTA 58.030 33.333 0.00 0.00 41.55 2.24
557 558 9.978044 GTAAATGATACGAGGGACTAAAAGTAT 57.022 33.333 0.00 0.00 41.55 2.12
559 560 6.645790 TGATACGAGGGACTAAAAGTATCC 57.354 41.667 9.88 0.00 41.55 2.59
560 561 5.240183 TGATACGAGGGACTAAAAGTATCCG 59.760 44.000 9.88 0.00 41.55 4.18
561 562 2.692041 ACGAGGGACTAAAAGTATCCGG 59.308 50.000 0.00 0.00 41.55 5.14
562 563 2.692041 CGAGGGACTAAAAGTATCCGGT 59.308 50.000 0.00 0.00 41.55 5.28
563 564 3.131755 CGAGGGACTAAAAGTATCCGGTT 59.868 47.826 0.00 0.00 41.55 4.44
564 565 4.382362 CGAGGGACTAAAAGTATCCGGTTT 60.382 45.833 0.00 0.00 41.55 3.27
565 566 5.163519 CGAGGGACTAAAAGTATCCGGTTTA 60.164 44.000 0.00 0.00 41.55 2.01
566 567 6.625532 AGGGACTAAAAGTATCCGGTTTAA 57.374 37.500 0.00 0.00 36.02 1.52
567 568 7.019656 AGGGACTAAAAGTATCCGGTTTAAA 57.980 36.000 0.00 0.00 36.02 1.52
568 569 7.460910 AGGGACTAAAAGTATCCGGTTTAAAA 58.539 34.615 0.00 0.00 36.02 1.52
569 570 7.944000 AGGGACTAAAAGTATCCGGTTTAAAAA 59.056 33.333 0.00 0.00 36.02 1.94
570 571 8.239314 GGGACTAAAAGTATCCGGTTTAAAAAG 58.761 37.037 0.00 0.00 32.90 2.27
571 572 8.786898 GGACTAAAAGTATCCGGTTTAAAAAGT 58.213 33.333 0.00 0.00 0.00 2.66
573 574 9.955208 ACTAAAAGTATCCGGTTTAAAAAGTTG 57.045 29.630 0.00 0.00 0.00 3.16
576 577 9.872721 AAAAGTATCCGGTTTAAAAAGTTGAAA 57.127 25.926 0.00 0.00 0.00 2.69
577 578 9.524106 AAAGTATCCGGTTTAAAAAGTTGAAAG 57.476 29.630 0.00 0.00 0.00 2.62
578 579 8.454570 AGTATCCGGTTTAAAAAGTTGAAAGA 57.545 30.769 0.00 0.00 0.00 2.52
579 580 8.347771 AGTATCCGGTTTAAAAAGTTGAAAGAC 58.652 33.333 0.00 0.00 0.00 3.01
580 581 6.762702 TCCGGTTTAAAAAGTTGAAAGACT 57.237 33.333 0.00 0.00 0.00 3.24
581 582 6.557110 TCCGGTTTAAAAAGTTGAAAGACTG 58.443 36.000 0.00 0.00 0.00 3.51
582 583 6.374894 TCCGGTTTAAAAAGTTGAAAGACTGA 59.625 34.615 0.00 0.00 0.00 3.41
583 584 6.691388 CCGGTTTAAAAAGTTGAAAGACTGAG 59.309 38.462 0.00 0.00 0.00 3.35
584 585 7.248437 CGGTTTAAAAAGTTGAAAGACTGAGT 58.752 34.615 0.00 0.00 0.00 3.41
585 586 7.753580 CGGTTTAAAAAGTTGAAAGACTGAGTT 59.246 33.333 0.00 0.00 0.00 3.01
586 587 9.419297 GGTTTAAAAAGTTGAAAGACTGAGTTT 57.581 29.630 0.00 0.00 0.00 2.66
593 594 9.668497 AAAGTTGAAAGACTGAGTTTTAGTAGT 57.332 29.630 0.00 0.00 0.00 2.73
594 595 9.668497 AAGTTGAAAGACTGAGTTTTAGTAGTT 57.332 29.630 0.00 0.00 0.00 2.24
595 596 9.668497 AGTTGAAAGACTGAGTTTTAGTAGTTT 57.332 29.630 0.00 0.00 0.00 2.66
596 597 9.917872 GTTGAAAGACTGAGTTTTAGTAGTTTC 57.082 33.333 0.00 0.00 34.69 2.78
597 598 8.348983 TGAAAGACTGAGTTTTAGTAGTTTCG 57.651 34.615 0.00 0.00 35.73 3.46
598 599 8.192774 TGAAAGACTGAGTTTTAGTAGTTTCGA 58.807 33.333 0.00 0.00 35.73 3.71
599 600 8.937634 AAAGACTGAGTTTTAGTAGTTTCGAA 57.062 30.769 0.00 0.00 0.00 3.71
600 601 8.576936 AAGACTGAGTTTTAGTAGTTTCGAAG 57.423 34.615 0.00 0.00 0.00 3.79
601 602 6.641723 AGACTGAGTTTTAGTAGTTTCGAAGC 59.358 38.462 3.49 3.49 0.00 3.86
602 603 5.695363 ACTGAGTTTTAGTAGTTTCGAAGCC 59.305 40.000 8.51 0.00 0.00 4.35
603 604 4.682860 TGAGTTTTAGTAGTTTCGAAGCCG 59.317 41.667 8.51 0.00 37.07 5.52
604 605 4.874970 AGTTTTAGTAGTTTCGAAGCCGA 58.125 39.130 8.51 0.00 43.96 5.54
605 606 4.922103 AGTTTTAGTAGTTTCGAAGCCGAG 59.078 41.667 8.51 0.00 46.39 4.63
606 607 4.771590 TTTAGTAGTTTCGAAGCCGAGA 57.228 40.909 8.51 0.00 46.39 4.04
607 608 2.923605 AGTAGTTTCGAAGCCGAGAG 57.076 50.000 8.51 0.00 46.39 3.20
608 609 2.434428 AGTAGTTTCGAAGCCGAGAGA 58.566 47.619 8.51 0.00 46.39 3.10
609 610 2.162008 AGTAGTTTCGAAGCCGAGAGAC 59.838 50.000 8.51 0.00 46.39 3.36
610 611 1.249407 AGTTTCGAAGCCGAGAGACT 58.751 50.000 8.51 0.00 46.39 3.24
611 612 2.434428 AGTTTCGAAGCCGAGAGACTA 58.566 47.619 8.51 0.00 46.39 2.59
612 613 3.018149 AGTTTCGAAGCCGAGAGACTAT 58.982 45.455 8.51 0.00 46.39 2.12
613 614 3.444388 AGTTTCGAAGCCGAGAGACTATT 59.556 43.478 8.51 0.00 46.39 1.73
614 615 4.082136 AGTTTCGAAGCCGAGAGACTATTT 60.082 41.667 8.51 0.00 46.39 1.40
615 616 3.694535 TCGAAGCCGAGAGACTATTTC 57.305 47.619 0.00 0.00 40.30 2.17
616 617 3.280295 TCGAAGCCGAGAGACTATTTCT 58.720 45.455 0.00 0.00 40.30 2.52
617 618 4.449131 TCGAAGCCGAGAGACTATTTCTA 58.551 43.478 0.00 0.00 40.30 2.10
618 619 5.064558 TCGAAGCCGAGAGACTATTTCTAT 58.935 41.667 0.00 0.00 40.30 1.98
619 620 6.228995 TCGAAGCCGAGAGACTATTTCTATA 58.771 40.000 0.00 0.00 40.30 1.31
620 621 6.147492 TCGAAGCCGAGAGACTATTTCTATAC 59.853 42.308 0.00 0.00 40.30 1.47
621 622 6.148150 CGAAGCCGAGAGACTATTTCTATACT 59.852 42.308 0.00 0.00 38.22 2.12
622 623 7.308109 CGAAGCCGAGAGACTATTTCTATACTT 60.308 40.741 0.00 0.00 38.22 2.24
623 624 7.209471 AGCCGAGAGACTATTTCTATACTTG 57.791 40.000 0.00 0.00 33.22 3.16
624 625 6.999272 AGCCGAGAGACTATTTCTATACTTGA 59.001 38.462 0.00 0.00 33.22 3.02
625 626 7.502895 AGCCGAGAGACTATTTCTATACTTGAA 59.497 37.037 0.00 0.00 33.22 2.69
626 627 8.301002 GCCGAGAGACTATTTCTATACTTGAAT 58.699 37.037 0.00 0.00 33.22 2.57
627 628 9.619316 CCGAGAGACTATTTCTATACTTGAATG 57.381 37.037 0.00 0.00 33.22 2.67
699 700 1.302511 ACAGCTGGATTTCGCGGTT 60.303 52.632 19.93 0.00 30.53 4.44
704 705 1.436983 CTGGATTTCGCGGTTAGCCC 61.437 60.000 6.13 1.04 44.76 5.19
705 706 1.450669 GGATTTCGCGGTTAGCCCA 60.451 57.895 6.13 0.00 44.76 5.36
706 707 1.436983 GGATTTCGCGGTTAGCCCAG 61.437 60.000 6.13 0.00 44.76 4.45
707 708 2.048312 GATTTCGCGGTTAGCCCAGC 62.048 60.000 6.13 0.00 44.76 4.85
712 713 4.832608 CGGTTAGCCCAGCGTCCC 62.833 72.222 0.00 0.00 32.94 4.46
725 726 4.699522 GTCCCAGCCGCGTTTCCT 62.700 66.667 4.92 0.00 0.00 3.36
838 842 2.203015 CCCGCCCCAATCACTACG 60.203 66.667 0.00 0.00 0.00 3.51
1506 1511 1.488390 TCCACACCCCTCGGTATTAC 58.512 55.000 0.00 0.00 42.04 1.89
1543 1548 5.354842 ACCTATTTGGACTAGCTTGTACC 57.645 43.478 8.12 8.58 39.71 3.34
1548 1553 2.546899 TGGACTAGCTTGTACCCACAT 58.453 47.619 8.12 0.00 33.76 3.21
1652 1657 9.844790 TTGTGCAATCTAAATCAATTAGTTCTG 57.155 29.630 0.00 0.00 41.54 3.02
1700 1705 8.585881 AGTTGTAACATGACTAGTACATGAGTT 58.414 33.333 27.55 19.37 45.22 3.01
1732 1737 8.372459 TGCTTAGTTACTTACTCTGGAATTCAA 58.628 33.333 7.93 0.00 38.33 2.69
1775 1780 9.677567 TGCAAAGTAAATCAAGAATTCAACTAC 57.322 29.630 8.44 0.95 0.00 2.73
1778 1783 8.842358 AAGTAAATCAAGAATTCAACTACGGA 57.158 30.769 8.44 0.00 0.00 4.69
1798 1803 3.204606 GGATAGGAAAGGGCTAGGGTTTT 59.795 47.826 0.00 0.00 0.00 2.43
1859 1865 9.109393 GTCCTTTCTATATGCATGTGTTCTAAA 57.891 33.333 10.16 0.47 0.00 1.85
1870 1876 8.187354 TGCATGTGTTCTAAAAATATGCATTG 57.813 30.769 3.54 0.00 42.88 2.82
1909 1915 1.028868 CAGCTGGCTCCTACTTTGGC 61.029 60.000 5.57 0.00 0.00 4.52
1954 1960 1.141053 GTAGGGGGTTATGGTCAGCAG 59.859 57.143 0.00 0.00 0.00 4.24
1984 1990 4.188937 TCCGATTGGGTACTACCAGTAT 57.811 45.455 7.57 0.00 42.47 2.12
2026 2032 7.339212 CCACAATACAGGTAAGATGATTTCCAA 59.661 37.037 0.00 0.00 0.00 3.53
2030 2036 6.254281 ACAGGTAAGATGATTTCCAAAACG 57.746 37.500 0.00 0.00 0.00 3.60
2046 2052 6.336566 TCCAAAACGTACAGTACAACTTGTA 58.663 36.000 11.37 0.00 0.00 2.41
2086 2123 7.411486 TTTAAGAAAATTCAGTGGGTTGACA 57.589 32.000 0.00 0.00 0.00 3.58
2094 2131 4.632327 TCAGTGGGTTGACAATGTATCA 57.368 40.909 0.00 0.00 37.66 2.15
2169 2206 5.047306 TGTTCCTAGATTGTCTGTTCACGAT 60.047 40.000 0.00 0.00 0.00 3.73
2180 2217 5.295540 TGTCTGTTCACGATTTTCATGTTCA 59.704 36.000 0.00 0.00 0.00 3.18
2362 2400 9.678260 AGTGATCTAAATGCTCTTGTATTTCTT 57.322 29.630 0.00 0.00 38.89 2.52
2533 2572 8.642432 TGTATTTGATTTTCCCACATTGTGTAA 58.358 29.630 15.34 6.85 0.00 2.41
2544 2583 8.476064 TCCCACATTGTGTAAATTATGCATAT 57.524 30.769 15.34 0.00 0.00 1.78
2545 2584 8.358895 TCCCACATTGTGTAAATTATGCATATG 58.641 33.333 15.34 0.00 0.00 1.78
2546 2585 7.116662 CCCACATTGTGTAAATTATGCATATGC 59.883 37.037 21.09 21.09 42.50 3.14
2547 2586 7.868922 CCACATTGTGTAAATTATGCATATGCT 59.131 33.333 27.13 15.45 42.66 3.79
2548 2587 9.896263 CACATTGTGTAAATTATGCATATGCTA 57.104 29.630 27.13 14.66 42.66 3.49
2591 2630 0.263468 TATCATCCGTCCCACTCCCA 59.737 55.000 0.00 0.00 0.00 4.37
2592 2631 1.338136 ATCATCCGTCCCACTCCCAC 61.338 60.000 0.00 0.00 0.00 4.61
2593 2632 1.990060 CATCCGTCCCACTCCCACT 60.990 63.158 0.00 0.00 0.00 4.00
2594 2633 1.686110 ATCCGTCCCACTCCCACTC 60.686 63.158 0.00 0.00 0.00 3.51
2675 2714 6.211184 TGGAGCAAAATATCACTGTTTGGAAT 59.789 34.615 0.00 0.00 33.72 3.01
2779 2821 8.403236 AGGTTAAAGTGTGAACATGTAAACTTC 58.597 33.333 0.00 0.00 0.00 3.01
3149 3191 7.038048 GCCTTCTTTTCCATCATAAAGAAAGG 58.962 38.462 10.21 12.71 44.92 3.11
3211 3253 5.649395 ACTGCATTCACTAAGCAACATATGT 59.351 36.000 1.41 1.41 37.89 2.29
3252 3294 5.209818 TGCTAACATAAATACTCCCTCCG 57.790 43.478 0.00 0.00 0.00 4.63
3253 3295 4.652421 TGCTAACATAAATACTCCCTCCGT 59.348 41.667 0.00 0.00 0.00 4.69
3254 3296 5.221382 TGCTAACATAAATACTCCCTCCGTC 60.221 44.000 0.00 0.00 0.00 4.79
3255 3297 4.684484 AACATAAATACTCCCTCCGTCC 57.316 45.455 0.00 0.00 0.00 4.79
3256 3298 2.970640 ACATAAATACTCCCTCCGTCCC 59.029 50.000 0.00 0.00 0.00 4.46
3257 3299 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
3258 3300 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
3259 3301 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3260 3302 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3261 3303 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3262 3304 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3263 3305 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3264 3306 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3265 3307 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3266 3308 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3267 3309 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3268 3310 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3269 3311 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3270 3312 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3271 3313 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3272 3314 5.566469 TCCGTCCCAAAATTCTTGTCTTAT 58.434 37.500 0.00 0.00 0.00 1.73
3273 3315 6.713276 TCCGTCCCAAAATTCTTGTCTTATA 58.287 36.000 0.00 0.00 0.00 0.98
3274 3316 7.343357 TCCGTCCCAAAATTCTTGTCTTATAT 58.657 34.615 0.00 0.00 0.00 0.86
3275 3317 7.832187 TCCGTCCCAAAATTCTTGTCTTATATT 59.168 33.333 0.00 0.00 0.00 1.28
3276 3318 8.466798 CCGTCCCAAAATTCTTGTCTTATATTT 58.533 33.333 0.00 0.00 0.00 1.40
3277 3319 9.289303 CGTCCCAAAATTCTTGTCTTATATTTG 57.711 33.333 0.00 0.00 0.00 2.32
3310 3352 7.862741 TGGATGTATCTAATACTAAAACGCG 57.137 36.000 3.53 3.53 36.70 6.01
3311 3353 7.650890 TGGATGTATCTAATACTAAAACGCGA 58.349 34.615 15.93 0.00 36.70 5.87
3312 3354 7.592533 TGGATGTATCTAATACTAAAACGCGAC 59.407 37.037 15.93 0.00 36.70 5.19
3313 3355 7.806960 GGATGTATCTAATACTAAAACGCGACT 59.193 37.037 15.93 0.00 36.70 4.18
3314 3356 9.178427 GATGTATCTAATACTAAAACGCGACTT 57.822 33.333 15.93 8.00 36.70 3.01
3315 3357 8.331539 TGTATCTAATACTAAAACGCGACTTG 57.668 34.615 15.93 0.77 36.70 3.16
3316 3358 8.183536 TGTATCTAATACTAAAACGCGACTTGA 58.816 33.333 15.93 0.00 36.70 3.02
3317 3359 9.178427 GTATCTAATACTAAAACGCGACTTGAT 57.822 33.333 15.93 5.20 33.00 2.57
3319 3361 8.552469 TCTAATACTAAAACGCGACTTGATAC 57.448 34.615 15.93 0.00 0.00 2.24
3320 3362 8.183536 TCTAATACTAAAACGCGACTTGATACA 58.816 33.333 15.93 0.00 0.00 2.29
3321 3363 7.766219 AATACTAAAACGCGACTTGATACAT 57.234 32.000 15.93 0.00 0.00 2.29
3322 3364 5.697848 ACTAAAACGCGACTTGATACATC 57.302 39.130 15.93 0.00 0.00 3.06
3323 3365 5.408356 ACTAAAACGCGACTTGATACATCT 58.592 37.500 15.93 0.00 0.00 2.90
3324 3366 4.584029 AAAACGCGACTTGATACATCTG 57.416 40.909 15.93 0.00 0.00 2.90
3325 3367 2.941453 ACGCGACTTGATACATCTGT 57.059 45.000 15.93 0.00 0.00 3.41
3326 3368 4.365899 AACGCGACTTGATACATCTGTA 57.634 40.909 15.93 0.00 34.67 2.74
3327 3369 4.569761 ACGCGACTTGATACATCTGTAT 57.430 40.909 15.93 2.53 43.38 2.29
3328 3370 4.933330 ACGCGACTTGATACATCTGTATT 58.067 39.130 15.93 0.00 40.99 1.89
3329 3371 5.348986 ACGCGACTTGATACATCTGTATTT 58.651 37.500 15.93 0.00 40.99 1.40
3330 3372 6.500910 ACGCGACTTGATACATCTGTATTTA 58.499 36.000 15.93 0.00 40.99 1.40
3331 3373 6.637254 ACGCGACTTGATACATCTGTATTTAG 59.363 38.462 15.93 7.42 40.99 1.85
3332 3374 6.856426 CGCGACTTGATACATCTGTATTTAGA 59.144 38.462 0.00 0.00 40.99 2.10
3333 3375 7.149112 CGCGACTTGATACATCTGTATTTAGAC 60.149 40.741 0.00 9.96 40.99 2.59
3334 3376 7.648112 GCGACTTGATACATCTGTATTTAGACA 59.352 37.037 14.44 3.49 40.99 3.41
3335 3377 9.516314 CGACTTGATACATCTGTATTTAGACAA 57.484 33.333 14.44 9.01 40.99 3.18
3356 3398 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3357 3399 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3358 3400 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3359 3401 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3366 3408 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3367 3409 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3369 3411 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3478 3521 0.698238 TTCCCTCCCATCCACACTTG 59.302 55.000 0.00 0.00 0.00 3.16
3619 3664 1.396648 TGTTTGCGTGTTGACTGTCTG 59.603 47.619 9.51 0.00 0.00 3.51
3755 3801 9.730705 ATCATCCTTGTATTCATAAGGTATGTG 57.269 33.333 0.00 0.00 42.24 3.21
3828 3874 4.890988 TGGATAATGGTCTCCTAACTGGA 58.109 43.478 0.00 0.00 43.86 3.86
3844 3890 0.251698 TGGACCCATTTGAGCATGCA 60.252 50.000 21.98 0.00 0.00 3.96
4064 4110 1.846541 GACGGCTGCTCTTATCAGTC 58.153 55.000 0.00 0.00 34.21 3.51
4204 4253 4.819630 CAGCACCCTGTAAGTTTGACTAAA 59.180 41.667 0.00 0.00 34.31 1.85
4253 4302 6.614906 ACTCTTAAGAATCAGGGATGAGTCAT 59.385 38.462 4.98 4.98 35.60 3.06
4263 4312 5.131475 TCAGGGATGAGTCATGATTTGATGA 59.869 40.000 11.20 2.47 36.54 2.92
4369 4418 6.606796 AGTCAGTGTCATGATCTATCACTCTT 59.393 38.462 11.78 0.84 40.03 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.294473 GGCAACTATATGGATATCATGGAGG 58.706 44.000 4.83 0.00 37.30 4.30
63 64 0.537371 GAGGGGCCGTTGGATTATGG 60.537 60.000 0.00 0.00 0.00 2.74
64 65 0.182537 TGAGGGGCCGTTGGATTATG 59.817 55.000 0.00 0.00 0.00 1.90
111 112 2.432510 GTTCTTCACCATCGATCCCTCT 59.567 50.000 0.00 0.00 0.00 3.69
172 173 2.827190 CGGCTGGCATGCAGATGT 60.827 61.111 21.36 0.00 34.04 3.06
234 235 1.034838 GGTGGTGGTTGTCTGTGCAA 61.035 55.000 0.00 0.00 0.00 4.08
242 243 1.069668 GACTTAGACGGTGGTGGTTGT 59.930 52.381 0.00 0.00 0.00 3.32
255 256 0.947180 GGCGGCAACAACGACTTAGA 60.947 55.000 3.07 0.00 36.18 2.10
304 305 4.729918 GGCTGAGCAGGGTGGTGG 62.730 72.222 6.82 0.00 0.00 4.61
305 306 3.914579 CTGGCTGAGCAGGGTGGTG 62.915 68.421 6.82 0.00 0.00 4.17
306 307 3.644606 CTGGCTGAGCAGGGTGGT 61.645 66.667 6.82 0.00 0.00 4.16
315 316 2.949106 CGTTGGTTGCTGGCTGAG 59.051 61.111 0.00 0.00 0.00 3.35
316 317 3.286751 GCGTTGGTTGCTGGCTGA 61.287 61.111 0.00 0.00 0.00 4.26
317 318 4.688419 CGCGTTGGTTGCTGGCTG 62.688 66.667 0.00 0.00 0.00 4.85
323 324 3.872409 ATTCACGCGCGTTGGTTGC 62.872 57.895 35.90 0.00 0.00 4.17
324 325 1.792057 GATTCACGCGCGTTGGTTG 60.792 57.895 35.90 22.15 0.00 3.77
325 326 1.897398 GAGATTCACGCGCGTTGGTT 61.897 55.000 35.90 18.48 0.00 3.67
326 327 2.357034 AGATTCACGCGCGTTGGT 60.357 55.556 35.90 21.56 0.00 3.67
327 328 2.395690 GAGATTCACGCGCGTTGG 59.604 61.111 35.90 23.76 0.00 3.77
328 329 2.379634 TGGAGATTCACGCGCGTTG 61.380 57.895 35.90 27.03 0.00 4.10
329 330 2.048597 TGGAGATTCACGCGCGTT 60.049 55.556 35.90 20.72 0.00 4.84
330 331 2.809601 GTGGAGATTCACGCGCGT 60.810 61.111 32.73 32.73 0.00 6.01
331 332 3.554692 GGTGGAGATTCACGCGCG 61.555 66.667 30.96 30.96 38.46 6.86
332 333 3.554692 CGGTGGAGATTCACGCGC 61.555 66.667 5.73 0.00 38.46 6.86
333 334 2.885644 CCGGTGGAGATTCACGCG 60.886 66.667 3.53 3.53 38.46 6.01
334 335 2.511600 CCCGGTGGAGATTCACGC 60.512 66.667 0.00 0.00 38.46 5.34
335 336 2.511600 GCCCGGTGGAGATTCACG 60.512 66.667 0.00 0.00 38.46 4.35
336 337 2.124695 GGCCCGGTGGAGATTCAC 60.125 66.667 0.00 0.00 36.95 3.18
337 338 2.000701 ATGGCCCGGTGGAGATTCA 61.001 57.895 0.00 0.00 0.00 2.57
338 339 1.526917 CATGGCCCGGTGGAGATTC 60.527 63.158 0.00 0.00 0.00 2.52
339 340 2.597340 CATGGCCCGGTGGAGATT 59.403 61.111 0.00 0.00 0.00 2.40
340 341 4.195334 GCATGGCCCGGTGGAGAT 62.195 66.667 0.00 0.00 0.00 2.75
342 343 4.864334 GAGCATGGCCCGGTGGAG 62.864 72.222 0.00 0.00 0.00 3.86
347 348 3.944250 AAAGTGGAGCATGGCCCGG 62.944 63.158 0.00 0.00 0.00 5.73
348 349 1.937546 GAAAAGTGGAGCATGGCCCG 61.938 60.000 0.00 0.00 0.00 6.13
349 350 0.899717 TGAAAAGTGGAGCATGGCCC 60.900 55.000 0.00 0.00 0.00 5.80
350 351 0.529378 CTGAAAAGTGGAGCATGGCC 59.471 55.000 0.00 0.00 0.00 5.36
351 352 1.200948 GTCTGAAAAGTGGAGCATGGC 59.799 52.381 0.00 0.00 0.00 4.40
352 353 2.486982 CAGTCTGAAAAGTGGAGCATGG 59.513 50.000 0.00 0.00 0.00 3.66
353 354 3.144506 ACAGTCTGAAAAGTGGAGCATG 58.855 45.455 6.91 0.00 0.00 4.06
354 355 3.406764 GACAGTCTGAAAAGTGGAGCAT 58.593 45.455 6.91 0.00 0.00 3.79
355 356 2.803133 CGACAGTCTGAAAAGTGGAGCA 60.803 50.000 6.91 0.00 0.00 4.26
356 357 1.795286 CGACAGTCTGAAAAGTGGAGC 59.205 52.381 6.91 0.00 0.00 4.70
357 358 1.795286 GCGACAGTCTGAAAAGTGGAG 59.205 52.381 6.91 0.00 0.00 3.86
358 359 1.540363 GGCGACAGTCTGAAAAGTGGA 60.540 52.381 6.91 0.00 0.00 4.02
359 360 0.868406 GGCGACAGTCTGAAAAGTGG 59.132 55.000 6.91 0.00 0.00 4.00
360 361 0.508641 CGGCGACAGTCTGAAAAGTG 59.491 55.000 6.91 0.00 0.00 3.16
361 362 1.222115 GCGGCGACAGTCTGAAAAGT 61.222 55.000 12.98 0.00 0.00 2.66
362 363 0.946221 AGCGGCGACAGTCTGAAAAG 60.946 55.000 12.98 0.00 0.00 2.27
363 364 1.069090 AGCGGCGACAGTCTGAAAA 59.931 52.632 12.98 0.00 0.00 2.29
364 365 1.664649 CAGCGGCGACAGTCTGAAA 60.665 57.895 12.98 0.00 0.00 2.69
365 366 2.049156 CAGCGGCGACAGTCTGAA 60.049 61.111 12.98 0.00 0.00 3.02
366 367 4.724602 GCAGCGGCGACAGTCTGA 62.725 66.667 12.98 0.00 0.00 3.27
376 377 0.960861 AAAAACCCTAGAGCAGCGGC 60.961 55.000 0.00 0.00 41.61 6.53
377 378 0.804989 CAAAAACCCTAGAGCAGCGG 59.195 55.000 0.00 0.00 0.00 5.52
378 379 0.169009 GCAAAAACCCTAGAGCAGCG 59.831 55.000 0.00 0.00 0.00 5.18
379 380 0.169009 CGCAAAAACCCTAGAGCAGC 59.831 55.000 0.00 0.00 0.00 5.25
380 381 1.734465 CTCGCAAAAACCCTAGAGCAG 59.266 52.381 0.00 0.00 0.00 4.24
381 382 1.346395 TCTCGCAAAAACCCTAGAGCA 59.654 47.619 0.00 0.00 0.00 4.26
382 383 2.094762 TCTCGCAAAAACCCTAGAGC 57.905 50.000 0.00 0.00 0.00 4.09
383 384 6.106673 TCTTTATCTCGCAAAAACCCTAGAG 58.893 40.000 0.00 0.00 0.00 2.43
384 385 6.045072 TCTTTATCTCGCAAAAACCCTAGA 57.955 37.500 0.00 0.00 0.00 2.43
385 386 5.294552 CCTCTTTATCTCGCAAAAACCCTAG 59.705 44.000 0.00 0.00 0.00 3.02
386 387 5.046159 TCCTCTTTATCTCGCAAAAACCCTA 60.046 40.000 0.00 0.00 0.00 3.53
387 388 4.010349 CCTCTTTATCTCGCAAAAACCCT 58.990 43.478 0.00 0.00 0.00 4.34
388 389 4.007659 TCCTCTTTATCTCGCAAAAACCC 58.992 43.478 0.00 0.00 0.00 4.11
389 390 5.502544 CGATCCTCTTTATCTCGCAAAAACC 60.503 44.000 0.00 0.00 0.00 3.27
390 391 5.291128 TCGATCCTCTTTATCTCGCAAAAAC 59.709 40.000 0.00 0.00 0.00 2.43
391 392 5.416083 TCGATCCTCTTTATCTCGCAAAAA 58.584 37.500 0.00 0.00 0.00 1.94
392 393 5.006153 TCGATCCTCTTTATCTCGCAAAA 57.994 39.130 0.00 0.00 0.00 2.44
393 394 4.098044 ACTCGATCCTCTTTATCTCGCAAA 59.902 41.667 0.00 0.00 0.00 3.68
394 395 3.632604 ACTCGATCCTCTTTATCTCGCAA 59.367 43.478 0.00 0.00 0.00 4.85
395 396 3.003793 CACTCGATCCTCTTTATCTCGCA 59.996 47.826 0.00 0.00 0.00 5.10
396 397 3.251245 TCACTCGATCCTCTTTATCTCGC 59.749 47.826 0.00 0.00 0.00 5.03
397 398 5.425577 TTCACTCGATCCTCTTTATCTCG 57.574 43.478 0.00 0.00 0.00 4.04
398 399 5.633182 GCATTCACTCGATCCTCTTTATCTC 59.367 44.000 0.00 0.00 0.00 2.75
399 400 5.537188 GCATTCACTCGATCCTCTTTATCT 58.463 41.667 0.00 0.00 0.00 1.98
400 401 4.384247 CGCATTCACTCGATCCTCTTTATC 59.616 45.833 0.00 0.00 0.00 1.75
401 402 4.302455 CGCATTCACTCGATCCTCTTTAT 58.698 43.478 0.00 0.00 0.00 1.40
402 403 3.490933 CCGCATTCACTCGATCCTCTTTA 60.491 47.826 0.00 0.00 0.00 1.85
403 404 2.544685 CGCATTCACTCGATCCTCTTT 58.455 47.619 0.00 0.00 0.00 2.52
404 405 1.202463 CCGCATTCACTCGATCCTCTT 60.202 52.381 0.00 0.00 0.00 2.85
405 406 0.387202 CCGCATTCACTCGATCCTCT 59.613 55.000 0.00 0.00 0.00 3.69
406 407 0.598680 CCCGCATTCACTCGATCCTC 60.599 60.000 0.00 0.00 0.00 3.71
407 408 1.043116 TCCCGCATTCACTCGATCCT 61.043 55.000 0.00 0.00 0.00 3.24
408 409 0.598680 CTCCCGCATTCACTCGATCC 60.599 60.000 0.00 0.00 0.00 3.36
409 410 0.385751 TCTCCCGCATTCACTCGATC 59.614 55.000 0.00 0.00 0.00 3.69
410 411 0.387202 CTCTCCCGCATTCACTCGAT 59.613 55.000 0.00 0.00 0.00 3.59
411 412 0.679960 TCTCTCCCGCATTCACTCGA 60.680 55.000 0.00 0.00 0.00 4.04
412 413 0.248825 CTCTCTCCCGCATTCACTCG 60.249 60.000 0.00 0.00 0.00 4.18
413 414 1.066908 CTCTCTCTCCCGCATTCACTC 59.933 57.143 0.00 0.00 0.00 3.51
414 415 1.110442 CTCTCTCTCCCGCATTCACT 58.890 55.000 0.00 0.00 0.00 3.41
415 416 0.103937 CCTCTCTCTCCCGCATTCAC 59.896 60.000 0.00 0.00 0.00 3.18
416 417 1.680522 GCCTCTCTCTCCCGCATTCA 61.681 60.000 0.00 0.00 0.00 2.57
417 418 1.068921 GCCTCTCTCTCCCGCATTC 59.931 63.158 0.00 0.00 0.00 2.67
418 419 1.684386 CTGCCTCTCTCTCCCGCATT 61.684 60.000 0.00 0.00 0.00 3.56
419 420 2.042537 TGCCTCTCTCTCCCGCAT 60.043 61.111 0.00 0.00 0.00 4.73
420 421 2.757508 CTGCCTCTCTCTCCCGCA 60.758 66.667 0.00 0.00 0.00 5.69
421 422 4.219999 GCTGCCTCTCTCTCCCGC 62.220 72.222 0.00 0.00 0.00 6.13
422 423 3.898509 CGCTGCCTCTCTCTCCCG 61.899 72.222 0.00 0.00 0.00 5.14
423 424 2.441164 TCGCTGCCTCTCTCTCCC 60.441 66.667 0.00 0.00 0.00 4.30
424 425 2.489275 CCTCGCTGCCTCTCTCTCC 61.489 68.421 0.00 0.00 0.00 3.71
425 426 3.119193 CCTCGCTGCCTCTCTCTC 58.881 66.667 0.00 0.00 0.00 3.20
426 427 3.146913 GCCTCGCTGCCTCTCTCT 61.147 66.667 0.00 0.00 0.00 3.10
442 443 0.324943 TCACTTAAGTGGCTGAGGGC 59.675 55.000 30.35 0.00 45.65 5.19
443 444 2.100605 GTCACTTAAGTGGCTGAGGG 57.899 55.000 28.75 6.02 46.41 4.30
449 450 0.782384 CGTCACGTCACTTAAGTGGC 59.218 55.000 30.35 28.64 46.44 5.01
450 451 1.269413 ACCGTCACGTCACTTAAGTGG 60.269 52.381 30.35 19.76 45.65 4.00
451 452 2.049228 GACCGTCACGTCACTTAAGTG 58.951 52.381 26.60 26.60 46.91 3.16
452 453 1.677576 TGACCGTCACGTCACTTAAGT 59.322 47.619 1.12 1.12 37.85 2.24
453 454 2.410785 TGACCGTCACGTCACTTAAG 57.589 50.000 0.00 0.00 37.85 1.85
454 455 2.867287 TTGACCGTCACGTCACTTAA 57.133 45.000 0.00 0.00 42.37 1.85
455 456 2.859538 GTTTTGACCGTCACGTCACTTA 59.140 45.455 0.00 0.00 42.37 2.24
456 457 1.662122 GTTTTGACCGTCACGTCACTT 59.338 47.619 0.00 0.00 42.37 3.16
457 458 1.283736 GTTTTGACCGTCACGTCACT 58.716 50.000 0.00 0.00 42.37 3.41
458 459 0.302589 GGTTTTGACCGTCACGTCAC 59.697 55.000 0.00 0.00 42.37 3.67
459 460 0.108281 TGGTTTTGACCGTCACGTCA 60.108 50.000 0.00 0.00 40.98 4.35
460 461 0.580104 CTGGTTTTGACCGTCACGTC 59.420 55.000 0.00 0.00 0.00 4.34
461 462 0.812412 CCTGGTTTTGACCGTCACGT 60.812 55.000 0.00 0.00 0.00 4.49
462 463 1.938861 CCTGGTTTTGACCGTCACG 59.061 57.895 0.00 0.00 0.00 4.35
463 464 1.652563 GCCTGGTTTTGACCGTCAC 59.347 57.895 0.00 0.00 0.00 3.67
464 465 1.527380 GGCCTGGTTTTGACCGTCA 60.527 57.895 0.00 0.00 0.00 4.35
465 466 0.893727 ATGGCCTGGTTTTGACCGTC 60.894 55.000 3.32 0.00 0.00 4.79
466 467 1.152830 ATGGCCTGGTTTTGACCGT 59.847 52.632 3.32 0.00 0.00 4.83
467 468 1.178534 ACATGGCCTGGTTTTGACCG 61.179 55.000 3.32 0.00 0.00 4.79
468 469 0.318120 CACATGGCCTGGTTTTGACC 59.682 55.000 3.32 0.00 0.00 4.02
469 470 0.318120 CCACATGGCCTGGTTTTGAC 59.682 55.000 3.32 0.00 0.00 3.18
470 471 0.187117 TCCACATGGCCTGGTTTTGA 59.813 50.000 3.32 0.00 34.44 2.69
471 472 0.318120 GTCCACATGGCCTGGTTTTG 59.682 55.000 3.32 0.00 34.44 2.44
472 473 1.178534 CGTCCACATGGCCTGGTTTT 61.179 55.000 3.32 0.00 34.44 2.43
473 474 1.603455 CGTCCACATGGCCTGGTTT 60.603 57.895 3.32 0.00 34.44 3.27
474 475 2.034066 CGTCCACATGGCCTGGTT 59.966 61.111 3.32 0.00 34.44 3.67
475 476 4.033776 CCGTCCACATGGCCTGGT 62.034 66.667 3.32 0.00 34.44 4.00
476 477 3.567579 AACCGTCCACATGGCCTGG 62.568 63.158 3.32 3.14 34.44 4.45
477 478 1.178534 AAAACCGTCCACATGGCCTG 61.179 55.000 3.32 2.01 34.44 4.85
478 479 0.402504 TAAAACCGTCCACATGGCCT 59.597 50.000 3.32 0.00 34.44 5.19
479 480 0.808755 CTAAAACCGTCCACATGGCC 59.191 55.000 0.00 0.00 34.44 5.36
480 481 1.467342 GACTAAAACCGTCCACATGGC 59.533 52.381 0.00 0.00 34.44 4.40
481 482 2.773487 TGACTAAAACCGTCCACATGG 58.227 47.619 0.00 0.00 34.34 3.66
482 483 4.533222 GTTTGACTAAAACCGTCCACATG 58.467 43.478 0.00 0.00 42.06 3.21
483 484 4.823790 GTTTGACTAAAACCGTCCACAT 57.176 40.909 0.00 0.00 42.06 3.21
492 493 7.262048 TGATTTGAACCTGGTTTGACTAAAAC 58.738 34.615 14.28 9.52 46.32 2.43
493 494 7.411486 TGATTTGAACCTGGTTTGACTAAAA 57.589 32.000 14.28 8.33 0.00 1.52
494 495 7.595819 ATGATTTGAACCTGGTTTGACTAAA 57.404 32.000 14.28 10.47 0.00 1.85
495 496 7.942341 AGTATGATTTGAACCTGGTTTGACTAA 59.058 33.333 14.28 4.94 0.00 2.24
496 497 7.458397 AGTATGATTTGAACCTGGTTTGACTA 58.542 34.615 14.28 0.04 0.00 2.59
497 498 6.306987 AGTATGATTTGAACCTGGTTTGACT 58.693 36.000 14.28 5.83 0.00 3.41
498 499 6.575162 AGTATGATTTGAACCTGGTTTGAC 57.425 37.500 14.28 1.48 0.00 3.18
499 500 8.698973 TTTAGTATGATTTGAACCTGGTTTGA 57.301 30.769 14.28 2.61 0.00 2.69
500 501 9.191995 GTTTTAGTATGATTTGAACCTGGTTTG 57.808 33.333 14.28 0.00 0.00 2.93
501 502 8.364894 GGTTTTAGTATGATTTGAACCTGGTTT 58.635 33.333 14.28 0.00 33.91 3.27
502 503 7.507616 TGGTTTTAGTATGATTTGAACCTGGTT 59.492 33.333 12.82 12.82 36.79 3.67
503 504 7.007723 TGGTTTTAGTATGATTTGAACCTGGT 58.992 34.615 0.00 0.00 36.79 4.00
504 505 7.176690 AGTGGTTTTAGTATGATTTGAACCTGG 59.823 37.037 0.00 0.00 36.79 4.45
505 506 8.023128 CAGTGGTTTTAGTATGATTTGAACCTG 58.977 37.037 0.00 0.00 36.79 4.00
506 507 7.724061 ACAGTGGTTTTAGTATGATTTGAACCT 59.276 33.333 0.00 0.00 36.79 3.50
507 508 7.882179 ACAGTGGTTTTAGTATGATTTGAACC 58.118 34.615 0.00 0.00 36.48 3.62
518 519 9.577110 CTCGTATCATTTACAGTGGTTTTAGTA 57.423 33.333 0.00 0.00 0.00 1.82
519 520 7.548075 CCTCGTATCATTTACAGTGGTTTTAGT 59.452 37.037 0.00 0.00 0.00 2.24
520 521 7.011109 CCCTCGTATCATTTACAGTGGTTTTAG 59.989 40.741 0.00 0.00 0.00 1.85
521 522 6.819649 CCCTCGTATCATTTACAGTGGTTTTA 59.180 38.462 0.00 0.00 0.00 1.52
522 523 5.646360 CCCTCGTATCATTTACAGTGGTTTT 59.354 40.000 0.00 0.00 0.00 2.43
523 524 5.046159 TCCCTCGTATCATTTACAGTGGTTT 60.046 40.000 0.00 0.00 0.00 3.27
524 525 4.468510 TCCCTCGTATCATTTACAGTGGTT 59.531 41.667 0.00 0.00 0.00 3.67
525 526 4.028131 TCCCTCGTATCATTTACAGTGGT 58.972 43.478 0.00 0.00 0.00 4.16
526 527 4.099573 AGTCCCTCGTATCATTTACAGTGG 59.900 45.833 0.00 0.00 0.00 4.00
527 528 5.263968 AGTCCCTCGTATCATTTACAGTG 57.736 43.478 0.00 0.00 0.00 3.66
528 529 7.414222 TTTAGTCCCTCGTATCATTTACAGT 57.586 36.000 0.00 0.00 0.00 3.55
529 530 7.980099 ACTTTTAGTCCCTCGTATCATTTACAG 59.020 37.037 0.00 0.00 0.00 2.74
530 531 7.844009 ACTTTTAGTCCCTCGTATCATTTACA 58.156 34.615 0.00 0.00 0.00 2.41
531 532 9.978044 ATACTTTTAGTCCCTCGTATCATTTAC 57.022 33.333 0.00 0.00 0.00 2.01
533 534 8.148999 GGATACTTTTAGTCCCTCGTATCATTT 58.851 37.037 0.00 0.00 36.55 2.32
534 535 7.523380 CGGATACTTTTAGTCCCTCGTATCATT 60.523 40.741 0.00 0.00 36.55 2.57
535 536 6.072064 CGGATACTTTTAGTCCCTCGTATCAT 60.072 42.308 0.00 0.00 36.55 2.45
536 537 5.240183 CGGATACTTTTAGTCCCTCGTATCA 59.760 44.000 0.00 0.00 36.55 2.15
537 538 5.335504 CCGGATACTTTTAGTCCCTCGTATC 60.336 48.000 0.00 0.00 34.99 2.24
538 539 4.522022 CCGGATACTTTTAGTCCCTCGTAT 59.478 45.833 0.00 0.00 0.00 3.06
539 540 3.885297 CCGGATACTTTTAGTCCCTCGTA 59.115 47.826 0.00 0.00 0.00 3.43
540 541 2.692041 CCGGATACTTTTAGTCCCTCGT 59.308 50.000 0.00 0.00 0.00 4.18
541 542 2.692041 ACCGGATACTTTTAGTCCCTCG 59.308 50.000 9.46 0.00 0.00 4.63
542 543 4.750021 AACCGGATACTTTTAGTCCCTC 57.250 45.455 9.46 0.00 0.00 4.30
543 544 6.625532 TTAAACCGGATACTTTTAGTCCCT 57.374 37.500 9.46 0.00 0.00 4.20
544 545 7.686438 TTTTAAACCGGATACTTTTAGTCCC 57.314 36.000 9.46 0.00 0.00 4.46
545 546 8.786898 ACTTTTTAAACCGGATACTTTTAGTCC 58.213 33.333 9.46 0.00 0.00 3.85
547 548 9.955208 CAACTTTTTAAACCGGATACTTTTAGT 57.045 29.630 9.46 0.00 0.00 2.24
550 551 9.872721 TTTCAACTTTTTAAACCGGATACTTTT 57.127 25.926 9.46 0.00 0.00 2.27
551 552 9.524106 CTTTCAACTTTTTAAACCGGATACTTT 57.476 29.630 9.46 0.00 0.00 2.66
552 553 8.905850 TCTTTCAACTTTTTAAACCGGATACTT 58.094 29.630 9.46 0.00 0.00 2.24
553 554 8.347771 GTCTTTCAACTTTTTAAACCGGATACT 58.652 33.333 9.46 0.00 0.00 2.12
554 555 8.347771 AGTCTTTCAACTTTTTAAACCGGATAC 58.652 33.333 9.46 0.00 0.00 2.24
555 556 8.347035 CAGTCTTTCAACTTTTTAAACCGGATA 58.653 33.333 9.46 0.00 0.00 2.59
556 557 7.067737 TCAGTCTTTCAACTTTTTAAACCGGAT 59.932 33.333 9.46 0.00 0.00 4.18
557 558 6.374894 TCAGTCTTTCAACTTTTTAAACCGGA 59.625 34.615 9.46 0.00 0.00 5.14
558 559 6.557110 TCAGTCTTTCAACTTTTTAAACCGG 58.443 36.000 0.00 0.00 0.00 5.28
559 560 7.248437 ACTCAGTCTTTCAACTTTTTAAACCG 58.752 34.615 0.00 0.00 0.00 4.44
560 561 8.981724 AACTCAGTCTTTCAACTTTTTAAACC 57.018 30.769 0.00 0.00 0.00 3.27
567 568 9.668497 ACTACTAAAACTCAGTCTTTCAACTTT 57.332 29.630 0.00 0.00 0.00 2.66
568 569 9.668497 AACTACTAAAACTCAGTCTTTCAACTT 57.332 29.630 0.00 0.00 0.00 2.66
569 570 9.668497 AAACTACTAAAACTCAGTCTTTCAACT 57.332 29.630 0.00 0.00 0.00 3.16
570 571 9.917872 GAAACTACTAAAACTCAGTCTTTCAAC 57.082 33.333 0.00 0.00 30.40 3.18
571 572 8.814235 CGAAACTACTAAAACTCAGTCTTTCAA 58.186 33.333 0.00 0.00 30.40 2.69
572 573 8.192774 TCGAAACTACTAAAACTCAGTCTTTCA 58.807 33.333 0.00 0.00 30.40 2.69
573 574 8.571461 TCGAAACTACTAAAACTCAGTCTTTC 57.429 34.615 0.00 0.00 0.00 2.62
574 575 8.937634 TTCGAAACTACTAAAACTCAGTCTTT 57.062 30.769 0.00 0.00 0.00 2.52
575 576 7.169476 GCTTCGAAACTACTAAAACTCAGTCTT 59.831 37.037 0.00 0.00 0.00 3.01
576 577 6.641723 GCTTCGAAACTACTAAAACTCAGTCT 59.358 38.462 0.00 0.00 0.00 3.24
577 578 6.128876 GGCTTCGAAACTACTAAAACTCAGTC 60.129 42.308 0.00 0.00 0.00 3.51
578 579 5.695363 GGCTTCGAAACTACTAAAACTCAGT 59.305 40.000 0.00 0.00 0.00 3.41
579 580 5.164080 CGGCTTCGAAACTACTAAAACTCAG 60.164 44.000 0.00 0.00 35.61 3.35
580 581 4.682860 CGGCTTCGAAACTACTAAAACTCA 59.317 41.667 0.00 0.00 35.61 3.41
581 582 4.919754 TCGGCTTCGAAACTACTAAAACTC 59.080 41.667 0.00 0.00 40.25 3.01
582 583 4.874970 TCGGCTTCGAAACTACTAAAACT 58.125 39.130 0.00 0.00 40.25 2.66
583 584 4.919754 TCTCGGCTTCGAAACTACTAAAAC 59.080 41.667 0.00 0.00 42.80 2.43
584 585 5.048504 TCTCTCGGCTTCGAAACTACTAAAA 60.049 40.000 0.00 0.00 42.80 1.52
585 586 4.456911 TCTCTCGGCTTCGAAACTACTAAA 59.543 41.667 0.00 0.00 42.80 1.85
586 587 4.005650 TCTCTCGGCTTCGAAACTACTAA 58.994 43.478 0.00 0.00 42.80 2.24
587 588 3.373439 GTCTCTCGGCTTCGAAACTACTA 59.627 47.826 0.00 0.00 42.80 1.82
588 589 2.162008 GTCTCTCGGCTTCGAAACTACT 59.838 50.000 0.00 0.00 42.80 2.57
589 590 2.162008 AGTCTCTCGGCTTCGAAACTAC 59.838 50.000 0.00 0.00 42.80 2.73
590 591 2.434428 AGTCTCTCGGCTTCGAAACTA 58.566 47.619 0.00 0.00 42.80 2.24
591 592 1.249407 AGTCTCTCGGCTTCGAAACT 58.751 50.000 0.00 0.00 42.80 2.66
592 593 2.915738 TAGTCTCTCGGCTTCGAAAC 57.084 50.000 0.00 0.00 42.80 2.78
593 594 4.158025 AGAAATAGTCTCTCGGCTTCGAAA 59.842 41.667 0.00 0.00 42.80 3.46
594 595 3.695060 AGAAATAGTCTCTCGGCTTCGAA 59.305 43.478 0.00 0.00 42.80 3.71
595 596 3.280295 AGAAATAGTCTCTCGGCTTCGA 58.720 45.455 0.00 0.00 41.01 3.71
596 597 3.701532 AGAAATAGTCTCTCGGCTTCG 57.298 47.619 0.00 0.00 0.00 3.79
597 598 7.443259 AGTATAGAAATAGTCTCTCGGCTTC 57.557 40.000 0.00 0.00 37.84 3.86
598 599 7.502895 TCAAGTATAGAAATAGTCTCTCGGCTT 59.497 37.037 0.00 0.00 37.84 4.35
599 600 6.999272 TCAAGTATAGAAATAGTCTCTCGGCT 59.001 38.462 0.00 0.00 37.84 5.52
600 601 7.204496 TCAAGTATAGAAATAGTCTCTCGGC 57.796 40.000 0.00 0.00 37.84 5.54
601 602 9.619316 CATTCAAGTATAGAAATAGTCTCTCGG 57.381 37.037 0.00 0.00 37.84 4.63
617 618 9.829507 CATCCTCTAACTCTTTCATTCAAGTAT 57.170 33.333 0.00 0.00 0.00 2.12
618 619 9.035890 TCATCCTCTAACTCTTTCATTCAAGTA 57.964 33.333 0.00 0.00 0.00 2.24
619 620 7.911651 TCATCCTCTAACTCTTTCATTCAAGT 58.088 34.615 0.00 0.00 0.00 3.16
620 621 8.783833 TTCATCCTCTAACTCTTTCATTCAAG 57.216 34.615 0.00 0.00 0.00 3.02
668 669 3.618351 TCCAGCTGTGGTAGAGTAGTAC 58.382 50.000 13.81 0.00 45.28 2.73
670 671 2.901338 TCCAGCTGTGGTAGAGTAGT 57.099 50.000 13.81 0.00 45.28 2.73
708 709 2.588856 ATAGGAAACGCGGCTGGGAC 62.589 60.000 17.67 7.07 0.00 4.46
709 710 1.906105 AATAGGAAACGCGGCTGGGA 61.906 55.000 17.67 0.00 0.00 4.37
710 711 1.436983 GAATAGGAAACGCGGCTGGG 61.437 60.000 12.47 8.27 0.00 4.45
711 712 1.762222 CGAATAGGAAACGCGGCTGG 61.762 60.000 12.47 0.00 0.00 4.85
712 713 0.804544 TCGAATAGGAAACGCGGCTG 60.805 55.000 12.47 0.00 0.00 4.85
835 839 2.284112 ACGAGGGGAAAGGGCGTA 60.284 61.111 0.00 0.00 32.94 4.42
967 972 2.344129 GGATCGGCGGGATTCCTC 59.656 66.667 7.21 0.00 34.82 3.71
1266 1271 0.034896 GCGAAACAGTGGAGGAGGAA 59.965 55.000 0.00 0.00 0.00 3.36
1381 1386 3.267860 GCCTCAGCATCGCGGAAG 61.268 66.667 6.13 0.00 39.53 3.46
1553 1558 5.353394 AACTACTTCGATGAAATGGCCTA 57.647 39.130 3.32 0.00 0.00 3.93
1599 1604 8.109705 ACAACATCAATAAGCAACAACTATGA 57.890 30.769 0.00 0.00 0.00 2.15
1652 1657 1.142097 GCTAGGGAAGACTCGTGGC 59.858 63.158 0.00 0.00 0.00 5.01
1700 1705 6.351033 CCAGAGTAAGTAACTAAGCACCATGA 60.351 42.308 0.00 0.00 39.07 3.07
1732 1737 3.113191 TGCAACATGATGGGGGTTAAT 57.887 42.857 0.00 0.00 0.00 1.40
1775 1780 0.977395 CCCTAGCCCTTTCCTATCCG 59.023 60.000 0.00 0.00 0.00 4.18
1778 1783 4.119918 AGAAAACCCTAGCCCTTTCCTAT 58.880 43.478 5.51 0.00 0.00 2.57
1859 1865 5.299279 GCCGCCCTATATACAATGCATATTT 59.701 40.000 0.00 0.00 0.00 1.40
1862 1868 3.433031 GGCCGCCCTATATACAATGCATA 60.433 47.826 0.00 0.00 0.00 3.14
1870 1876 2.500098 TGATCTTGGCCGCCCTATATAC 59.500 50.000 7.03 0.00 0.00 1.47
1954 1960 2.106683 CCCAATCGGAAGTGGTCGC 61.107 63.158 9.48 0.00 39.03 5.19
1984 1990 1.229690 TGGAACCGGGAATCCCTGA 60.230 57.895 16.94 0.00 42.67 3.86
2053 2090 7.225341 CCACTGAATTTTCTTAAAAGCTTTGCT 59.775 33.333 13.54 0.00 42.56 3.91
2058 2095 6.731292 ACCCACTGAATTTTCTTAAAAGCT 57.269 33.333 0.00 0.00 33.22 3.74
2059 2096 6.983890 TCAACCCACTGAATTTTCTTAAAAGC 59.016 34.615 0.00 0.00 33.22 3.51
2060 2097 7.978975 TGTCAACCCACTGAATTTTCTTAAAAG 59.021 33.333 0.00 0.00 33.22 2.27
2061 2098 7.841956 TGTCAACCCACTGAATTTTCTTAAAA 58.158 30.769 0.00 0.00 34.41 1.52
2086 2123 8.573885 CCAGTTTGATAGCATCATTGATACATT 58.426 33.333 0.00 0.00 39.39 2.71
2094 2131 8.640063 TTATATGCCAGTTTGATAGCATCATT 57.360 30.769 0.00 0.00 44.48 2.57
2169 2206 5.713792 TCGGCCTAAAATGAACATGAAAA 57.286 34.783 0.00 0.00 0.00 2.29
2180 2217 3.963129 TGGTGAAGAATCGGCCTAAAAT 58.037 40.909 0.00 0.00 0.00 1.82
2357 2395 4.834496 TCAAGTACTCCCTCCGTAAAGAAA 59.166 41.667 0.00 0.00 0.00 2.52
2360 2398 5.340439 AATCAAGTACTCCCTCCGTAAAG 57.660 43.478 0.00 0.00 0.00 1.85
2361 2399 5.750352 AAATCAAGTACTCCCTCCGTAAA 57.250 39.130 0.00 0.00 0.00 2.01
2362 2400 6.855763 TTAAATCAAGTACTCCCTCCGTAA 57.144 37.500 0.00 0.00 0.00 3.18
2363 2401 8.537728 TTATTAAATCAAGTACTCCCTCCGTA 57.462 34.615 0.00 0.00 0.00 4.02
2364 2402 5.952347 ATTAAATCAAGTACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
2365 2403 8.202137 TCTTTATTAAATCAAGTACTCCCTCCG 58.798 37.037 0.00 0.00 0.00 4.63
2413 2451 4.445453 TGCAGAGTATGGTTGCATTCTAG 58.555 43.478 0.00 0.00 42.41 2.43
2473 2512 3.431673 TTGTGCCCAAGTGATACATGA 57.568 42.857 0.00 0.00 0.00 3.07
2519 2558 6.788598 ATGCATAATTTACACAATGTGGGA 57.211 33.333 18.37 2.09 37.94 4.37
2533 2572 7.318141 GGACAAGCAATAGCATATGCATAATT 58.682 34.615 28.62 20.24 44.95 1.40
2544 2583 0.613260 ACGAGGGACAAGCAATAGCA 59.387 50.000 0.00 0.00 45.49 3.49
2545 2584 1.739067 AACGAGGGACAAGCAATAGC 58.261 50.000 0.00 0.00 42.56 2.97
2546 2585 2.866762 GCTAACGAGGGACAAGCAATAG 59.133 50.000 0.00 0.00 33.38 1.73
2547 2586 2.419574 GGCTAACGAGGGACAAGCAATA 60.420 50.000 0.00 0.00 34.85 1.90
2548 2587 1.679032 GGCTAACGAGGGACAAGCAAT 60.679 52.381 0.00 0.00 34.85 3.56
2549 2588 0.321298 GGCTAACGAGGGACAAGCAA 60.321 55.000 0.00 0.00 34.85 3.91
2591 2630 1.700186 GGAACAGGGGAAAGAGTGAGT 59.300 52.381 0.00 0.00 0.00 3.41
2592 2631 1.981495 AGGAACAGGGGAAAGAGTGAG 59.019 52.381 0.00 0.00 0.00 3.51
2593 2632 2.118403 AGGAACAGGGGAAAGAGTGA 57.882 50.000 0.00 0.00 0.00 3.41
2594 2633 2.887152 CAAAGGAACAGGGGAAAGAGTG 59.113 50.000 0.00 0.00 0.00 3.51
2675 2714 9.739276 AAATGAACTGAATGTACTTCTTATGGA 57.261 29.630 0.00 0.00 34.75 3.41
2826 2868 4.590850 ACCCTGCAAAGAGACATTTTTC 57.409 40.909 0.00 0.00 0.00 2.29
3149 3191 4.079253 TGTCTGAGTTTATTTGGAAGGCC 58.921 43.478 0.00 0.00 0.00 5.19
3211 3253 9.679661 TGTTAGCATAATAATTCAGAGTGGAAA 57.320 29.630 0.00 0.00 0.00 3.13
3244 3286 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3245 3287 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3246 3288 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3247 3289 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3248 3290 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3249 3291 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3250 3292 5.897377 ATAAGACAAGAATTTTGGGACGG 57.103 39.130 0.00 0.00 0.00 4.79
3251 3293 9.289303 CAAATATAAGACAAGAATTTTGGGACG 57.711 33.333 5.68 0.00 0.00 4.79
3284 3326 9.563898 CGCGTTTTAGTATTAGATACATCCATA 57.436 33.333 0.00 0.00 38.21 2.74
3285 3327 8.301720 TCGCGTTTTAGTATTAGATACATCCAT 58.698 33.333 5.77 0.00 38.21 3.41
3286 3328 7.592533 GTCGCGTTTTAGTATTAGATACATCCA 59.407 37.037 5.77 0.00 38.21 3.41
3287 3329 7.806960 AGTCGCGTTTTAGTATTAGATACATCC 59.193 37.037 5.77 0.00 38.21 3.51
3288 3330 8.725212 AGTCGCGTTTTAGTATTAGATACATC 57.275 34.615 5.77 0.00 38.21 3.06
3289 3331 8.965172 CAAGTCGCGTTTTAGTATTAGATACAT 58.035 33.333 5.77 0.00 38.21 2.29
3290 3332 8.183536 TCAAGTCGCGTTTTAGTATTAGATACA 58.816 33.333 5.77 0.00 38.21 2.29
3291 3333 8.552469 TCAAGTCGCGTTTTAGTATTAGATAC 57.448 34.615 5.77 0.00 35.99 2.24
3293 3335 9.178427 GTATCAAGTCGCGTTTTAGTATTAGAT 57.822 33.333 5.77 2.35 0.00 1.98
3294 3336 8.183536 TGTATCAAGTCGCGTTTTAGTATTAGA 58.816 33.333 5.77 0.00 0.00 2.10
3295 3337 8.331539 TGTATCAAGTCGCGTTTTAGTATTAG 57.668 34.615 5.77 0.00 0.00 1.73
3296 3338 8.861033 ATGTATCAAGTCGCGTTTTAGTATTA 57.139 30.769 5.77 0.00 0.00 0.98
3297 3339 7.705325 AGATGTATCAAGTCGCGTTTTAGTATT 59.295 33.333 5.77 0.00 0.00 1.89
3298 3340 7.167635 CAGATGTATCAAGTCGCGTTTTAGTAT 59.832 37.037 5.77 0.00 0.00 2.12
3299 3341 6.471198 CAGATGTATCAAGTCGCGTTTTAGTA 59.529 38.462 5.77 0.00 0.00 1.82
3300 3342 5.288712 CAGATGTATCAAGTCGCGTTTTAGT 59.711 40.000 5.77 0.00 0.00 2.24
3301 3343 5.288712 ACAGATGTATCAAGTCGCGTTTTAG 59.711 40.000 5.77 0.00 0.00 1.85
3302 3344 5.165676 ACAGATGTATCAAGTCGCGTTTTA 58.834 37.500 5.77 0.00 0.00 1.52
3303 3345 3.994392 ACAGATGTATCAAGTCGCGTTTT 59.006 39.130 5.77 0.00 0.00 2.43
3304 3346 3.585862 ACAGATGTATCAAGTCGCGTTT 58.414 40.909 5.77 0.00 0.00 3.60
3305 3347 3.232213 ACAGATGTATCAAGTCGCGTT 57.768 42.857 5.77 0.00 0.00 4.84
3306 3348 2.941453 ACAGATGTATCAAGTCGCGT 57.059 45.000 5.77 0.00 0.00 6.01
3307 3349 5.890110 AAATACAGATGTATCAAGTCGCG 57.110 39.130 0.00 0.00 40.10 5.87
3308 3350 7.648112 TGTCTAAATACAGATGTATCAAGTCGC 59.352 37.037 5.97 4.06 40.10 5.19
3309 3351 9.516314 TTGTCTAAATACAGATGTATCAAGTCG 57.484 33.333 5.97 0.00 40.10 4.18
3330 3372 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3331 3373 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3332 3374 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3333 3375 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3334 3376 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3335 3377 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3336 3378 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3337 3379 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3338 3380 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3339 3381 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3340 3382 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3341 3383 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3342 3384 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3343 3385 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3344 3386 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3345 3387 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3346 3388 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3347 3389 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3348 3390 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3349 3391 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3350 3392 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3351 3393 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3352 3394 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
3353 3395 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3354 3396 1.201424 AATTGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
3355 3397 3.268330 GAAAATTGTACTCCCTCCGTCC 58.732 50.000 0.00 0.00 0.00 4.79
3356 3398 3.268330 GGAAAATTGTACTCCCTCCGTC 58.732 50.000 0.00 0.00 0.00 4.79
3357 3399 2.640826 TGGAAAATTGTACTCCCTCCGT 59.359 45.455 0.00 0.00 0.00 4.69
3358 3400 3.343941 TGGAAAATTGTACTCCCTCCG 57.656 47.619 0.00 0.00 0.00 4.63
3359 3401 6.605471 AAAATGGAAAATTGTACTCCCTCC 57.395 37.500 0.00 0.00 0.00 4.30
3366 3408 9.541143 TTCAGGAAGAAAAATGGAAAATTGTAC 57.459 29.630 0.00 0.00 32.05 2.90
3369 3411 9.498176 AGATTCAGGAAGAAAAATGGAAAATTG 57.502 29.630 0.00 0.00 40.22 2.32
3478 3521 0.605589 GTGAGTGGGCTGGTACAACC 60.606 60.000 0.00 0.00 45.32 3.77
3580 3625 7.092716 GCAAACAAGATAACAACAATCCAGAT 58.907 34.615 0.00 0.00 0.00 2.90
3619 3664 6.803154 AAAAATCTAGTGTCAGTTACAGCC 57.197 37.500 0.00 0.00 39.29 4.85
3648 3693 3.316868 GCAAACTAAAGTTACCTGGCACA 59.683 43.478 0.00 0.00 37.25 4.57
3844 3890 1.873591 GAACAGACCAAAGTCACGCAT 59.126 47.619 0.00 0.00 46.15 4.73
4064 4110 2.229784 GACAGGATTTGAACCAAGCCAG 59.770 50.000 0.00 0.00 0.00 4.85
4204 4253 3.139025 CCATCATGACTAATCCCCTTGGT 59.861 47.826 0.00 0.00 0.00 3.67
4253 4302 6.046290 ACTCATCTCAGTGTCATCAAATCA 57.954 37.500 0.00 0.00 0.00 2.57
4369 4418 2.235155 TCAATAGGCCTAGTGCGAAACA 59.765 45.455 30.87 13.34 42.61 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.