Multiple sequence alignment - TraesCS6A01G277600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G277600 chr6A 100.000 5007 0 0 1 5007 504895110 504890104 0.000000e+00 9247.0
1 TraesCS6A01G277600 chr6D 92.617 2438 100 25 699 3089 363874411 363872007 0.000000e+00 3432.0
2 TraesCS6A01G277600 chr6D 96.528 1152 36 2 3078 4228 363870384 363869236 0.000000e+00 1903.0
3 TraesCS6A01G277600 chr6D 90.301 299 25 3 4712 5007 363827824 363827527 6.080000e-104 388.0
4 TraesCS6A01G277600 chr6D 88.839 224 13 5 4218 4439 363869074 363868861 1.070000e-66 265.0
5 TraesCS6A01G277600 chr6D 86.463 229 16 11 336 555 363874643 363874421 2.330000e-58 237.0
6 TraesCS6A01G277600 chr6D 88.953 172 16 3 4542 4710 363841853 363841682 5.080000e-50 209.0
7 TraesCS6A01G277600 chr6B 93.726 2056 89 18 699 2743 548630388 548628362 0.000000e+00 3046.0
8 TraesCS6A01G277600 chr6B 88.889 1773 90 47 2807 4478 548628356 548626590 0.000000e+00 2084.0
9 TraesCS6A01G277600 chr6B 88.122 362 34 1 4486 4847 548626546 548626194 5.990000e-114 422.0
10 TraesCS6A01G277600 chr6B 93.258 89 4 1 4921 5007 548626192 548626104 4.070000e-26 130.0
11 TraesCS6A01G277600 chr5D 79.799 1292 212 30 1084 2357 370118077 370119337 0.000000e+00 894.0
12 TraesCS6A01G277600 chr5D 85.935 711 81 12 3133 3835 370120155 370120854 0.000000e+00 741.0
13 TraesCS6A01G277600 chr5D 92.105 38 3 0 294 331 314415365 314415402 3.000000e-03 54.7
14 TraesCS6A01G277600 chr5B 79.495 1307 211 40 1066 2351 439276762 439278032 0.000000e+00 876.0
15 TraesCS6A01G277600 chr5B 85.915 710 83 13 3133 3835 439280223 439280922 0.000000e+00 741.0
16 TraesCS6A01G277600 chr5A 86.525 705 82 9 3133 3835 472493740 472494433 0.000000e+00 763.0
17 TraesCS6A01G277600 chr5A 92.727 110 8 0 577 686 657584798 657584689 5.190000e-35 159.0
18 TraesCS6A01G277600 chr5A 92.035 113 7 2 579 690 343457869 343457980 1.870000e-34 158.0
19 TraesCS6A01G277600 chr5A 89.431 123 11 2 574 695 363850786 363850907 2.410000e-33 154.0
20 TraesCS6A01G277600 chr7D 83.154 558 88 3 1371 1922 90588209 90587652 5.780000e-139 505.0
21 TraesCS6A01G277600 chr7D 76.902 723 125 29 3133 3839 219713949 219714645 6.120000e-99 372.0
22 TraesCS6A01G277600 chr7D 76.014 592 108 16 3251 3834 234345608 234346173 4.940000e-70 276.0
23 TraesCS6A01G277600 chr7D 77.580 281 43 12 2092 2353 219712911 219713190 8.680000e-33 152.0
24 TraesCS6A01G277600 chr4A 79.828 580 104 10 1354 1922 16886067 16886644 1.300000e-110 411.0
25 TraesCS6A01G277600 chr2A 80.216 556 100 7 1371 1922 409138222 409137673 4.670000e-110 409.0
26 TraesCS6A01G277600 chr2A 93.519 108 7 0 579 686 628748493 628748600 1.440000e-35 161.0
27 TraesCS6A01G277600 chr2A 92.727 110 8 0 578 687 78333816 78333707 5.190000e-35 159.0
28 TraesCS6A01G277600 chr2A 86.765 136 13 5 579 710 507768946 507768812 4.040000e-31 147.0
29 TraesCS6A01G277600 chr3A 78.674 558 97 11 1371 1922 6765155 6764614 7.980000e-93 351.0
30 TraesCS6A01G277600 chr1B 78.495 558 90 13 1371 1922 313398744 313398211 6.210000e-89 339.0
31 TraesCS6A01G277600 chr3D 76.102 590 111 14 3251 3834 456654982 456655547 1.060000e-71 281.0
32 TraesCS6A01G277600 chrUn 87.151 179 23 0 3251 3429 478826482 478826660 2.360000e-48 204.0
33 TraesCS6A01G277600 chr4D 94.393 107 6 0 579 685 8411426 8411320 1.120000e-36 165.0
34 TraesCS6A01G277600 chr1A 92.105 114 8 1 575 688 502769348 502769460 5.190000e-35 159.0
35 TraesCS6A01G277600 chr2D 90.083 121 10 2 572 691 382457284 382457165 6.710000e-34 156.0
36 TraesCS6A01G277600 chr7B 78.462 260 36 11 2113 2353 180031180 180030922 8.680000e-33 152.0
37 TraesCS6A01G277600 chr7A 77.224 281 44 13 2092 2353 232281626 232281905 4.040000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G277600 chr6A 504890104 504895110 5006 True 9247.00 9247 100.00000 1 5007 1 chr6A.!!$R1 5006
1 TraesCS6A01G277600 chr6D 363868861 363874643 5782 True 1459.25 3432 91.11175 336 4439 4 chr6D.!!$R3 4103
2 TraesCS6A01G277600 chr6B 548626104 548630388 4284 True 1420.50 3046 90.99875 699 5007 4 chr6B.!!$R1 4308
3 TraesCS6A01G277600 chr5D 370118077 370120854 2777 False 817.50 894 82.86700 1084 3835 2 chr5D.!!$F2 2751
4 TraesCS6A01G277600 chr5B 439276762 439280922 4160 False 808.50 876 82.70500 1066 3835 2 chr5B.!!$F1 2769
5 TraesCS6A01G277600 chr5A 472493740 472494433 693 False 763.00 763 86.52500 3133 3835 1 chr5A.!!$F3 702
6 TraesCS6A01G277600 chr7D 90587652 90588209 557 True 505.00 505 83.15400 1371 1922 1 chr7D.!!$R1 551
7 TraesCS6A01G277600 chr7D 234345608 234346173 565 False 276.00 276 76.01400 3251 3834 1 chr7D.!!$F1 583
8 TraesCS6A01G277600 chr7D 219712911 219714645 1734 False 262.00 372 77.24100 2092 3839 2 chr7D.!!$F2 1747
9 TraesCS6A01G277600 chr4A 16886067 16886644 577 False 411.00 411 79.82800 1354 1922 1 chr4A.!!$F1 568
10 TraesCS6A01G277600 chr2A 409137673 409138222 549 True 409.00 409 80.21600 1371 1922 1 chr2A.!!$R2 551
11 TraesCS6A01G277600 chr3A 6764614 6765155 541 True 351.00 351 78.67400 1371 1922 1 chr3A.!!$R1 551
12 TraesCS6A01G277600 chr1B 313398211 313398744 533 True 339.00 339 78.49500 1371 1922 1 chr1B.!!$R1 551
13 TraesCS6A01G277600 chr3D 456654982 456655547 565 False 281.00 281 76.10200 3251 3834 1 chr3D.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.038983 AAAATTGCCCCGTACGTTGC 60.039 50.000 15.21 16.02 0.00 4.17 F
887 901 0.447406 TTGTACAGATGCATGCACGC 59.553 50.000 25.37 18.20 0.00 5.34 F
888 902 1.011904 GTACAGATGCATGCACGCG 60.012 57.895 25.37 16.16 33.35 6.01 F
1575 1606 1.070786 GGAGCTGGACACGGTGAAA 59.929 57.895 16.29 0.00 0.00 2.69 F
2965 4573 0.393820 TTTGACCCGTCCACAGTACC 59.606 55.000 0.00 0.00 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 1708 1.538634 CCGTCGTCCTTGGTGTTGTTA 60.539 52.381 0.00 0.00 0.00 2.41 R
2617 2681 1.394917 GCAACTCATTCTTCACGCGAT 59.605 47.619 15.93 0.00 0.00 4.58 R
2790 4092 2.545946 GCCGTCAGCTTGAAATCTATCC 59.454 50.000 0.00 0.00 38.99 2.59 R
3052 4663 0.822811 TCAGAGATGAGTGCTGCTCC 59.177 55.000 0.00 0.00 43.48 4.70 R
4572 8888 0.031314 CTGGCGATGCTATGACGTCT 59.969 55.000 17.92 4.95 32.79 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.277239 GCACCGAAAAATTGCCCC 57.723 55.556 0.00 0.00 0.00 5.80
20 21 1.736282 GCACCGAAAAATTGCCCCG 60.736 57.895 0.00 0.00 0.00 5.73
21 22 1.663173 CACCGAAAAATTGCCCCGT 59.337 52.632 0.00 0.00 0.00 5.28
22 23 0.882474 CACCGAAAAATTGCCCCGTA 59.118 50.000 0.00 0.00 0.00 4.02
23 24 0.883153 ACCGAAAAATTGCCCCGTAC 59.117 50.000 0.00 0.00 0.00 3.67
24 25 0.179184 CCGAAAAATTGCCCCGTACG 60.179 55.000 8.69 8.69 0.00 3.67
25 26 0.518195 CGAAAAATTGCCCCGTACGT 59.482 50.000 15.21 0.00 0.00 3.57
26 27 1.069091 CGAAAAATTGCCCCGTACGTT 60.069 47.619 15.21 0.00 0.00 3.99
27 28 2.321263 GAAAAATTGCCCCGTACGTTG 58.679 47.619 15.21 5.70 0.00 4.10
28 29 0.038983 AAAATTGCCCCGTACGTTGC 60.039 50.000 15.21 16.02 0.00 4.17
29 30 1.173444 AAATTGCCCCGTACGTTGCA 61.173 50.000 20.73 20.73 0.00 4.08
30 31 1.173444 AATTGCCCCGTACGTTGCAA 61.173 50.000 30.83 30.83 46.51 4.08
31 32 1.858372 ATTGCCCCGTACGTTGCAAC 61.858 55.000 31.14 19.89 45.44 4.17
32 33 2.973600 GCCCCGTACGTTGCAACA 60.974 61.111 28.01 7.99 0.00 3.33
33 34 2.961669 GCCCCGTACGTTGCAACAG 61.962 63.158 28.01 21.60 0.00 3.16
34 35 2.322081 CCCCGTACGTTGCAACAGG 61.322 63.158 28.01 22.31 0.00 4.00
35 36 1.595929 CCCGTACGTTGCAACAGGT 60.596 57.895 28.01 20.31 0.00 4.00
36 37 1.161563 CCCGTACGTTGCAACAGGTT 61.162 55.000 28.01 12.01 0.00 3.50
37 38 1.500108 CCGTACGTTGCAACAGGTTA 58.500 50.000 28.01 11.05 0.00 2.85
38 39 2.070783 CCGTACGTTGCAACAGGTTAT 58.929 47.619 28.01 9.11 0.00 1.89
39 40 3.252400 CCGTACGTTGCAACAGGTTATA 58.748 45.455 28.01 8.19 0.00 0.98
40 41 3.679025 CCGTACGTTGCAACAGGTTATAA 59.321 43.478 28.01 2.43 0.00 0.98
41 42 4.330620 CCGTACGTTGCAACAGGTTATAAT 59.669 41.667 28.01 6.95 0.00 1.28
42 43 5.163834 CCGTACGTTGCAACAGGTTATAATT 60.164 40.000 28.01 6.33 0.00 1.40
43 44 6.035866 CCGTACGTTGCAACAGGTTATAATTA 59.964 38.462 28.01 5.49 0.00 1.40
44 45 7.254522 CCGTACGTTGCAACAGGTTATAATTAT 60.255 37.037 28.01 2.97 0.00 1.28
45 46 8.117988 CGTACGTTGCAACAGGTTATAATTATT 58.882 33.333 28.01 4.68 0.00 1.40
46 47 9.429600 GTACGTTGCAACAGGTTATAATTATTC 57.570 33.333 28.01 0.00 0.00 1.75
47 48 8.276252 ACGTTGCAACAGGTTATAATTATTCT 57.724 30.769 28.01 0.00 0.00 2.40
48 49 9.386010 ACGTTGCAACAGGTTATAATTATTCTA 57.614 29.630 28.01 0.00 0.00 2.10
49 50 9.864034 CGTTGCAACAGGTTATAATTATTCTAG 57.136 33.333 28.01 2.15 0.00 2.43
50 51 9.665264 GTTGCAACAGGTTATAATTATTCTAGC 57.335 33.333 24.52 0.41 0.00 3.42
51 52 8.972458 TGCAACAGGTTATAATTATTCTAGCA 57.028 30.769 2.68 7.71 0.00 3.49
52 53 8.836413 TGCAACAGGTTATAATTATTCTAGCAC 58.164 33.333 2.68 0.00 0.00 4.40
53 54 8.009974 GCAACAGGTTATAATTATTCTAGCACG 58.990 37.037 2.68 0.00 0.00 5.34
54 55 9.042008 CAACAGGTTATAATTATTCTAGCACGT 57.958 33.333 2.68 0.00 0.00 4.49
55 56 9.609346 AACAGGTTATAATTATTCTAGCACGTT 57.391 29.630 2.68 5.21 0.00 3.99
58 59 9.924650 AGGTTATAATTATTCTAGCACGTTAGG 57.075 33.333 2.68 0.00 0.00 2.69
59 60 9.702494 GGTTATAATTATTCTAGCACGTTAGGT 57.298 33.333 2.68 0.00 0.00 3.08
63 64 6.903883 ATTATTCTAGCACGTTAGGTTGTG 57.096 37.500 0.00 0.00 39.10 3.33
64 65 4.530710 ATTCTAGCACGTTAGGTTGTGA 57.469 40.909 0.00 0.00 38.36 3.58
65 66 4.530710 TTCTAGCACGTTAGGTTGTGAT 57.469 40.909 0.00 0.00 38.36 3.06
66 67 4.530710 TCTAGCACGTTAGGTTGTGATT 57.469 40.909 0.00 0.00 38.36 2.57
67 68 4.491676 TCTAGCACGTTAGGTTGTGATTC 58.508 43.478 0.00 0.00 38.36 2.52
68 69 3.120321 AGCACGTTAGGTTGTGATTCA 57.880 42.857 0.00 0.00 38.36 2.57
69 70 2.806244 AGCACGTTAGGTTGTGATTCAC 59.194 45.455 9.93 9.93 38.36 3.18
70 71 2.546368 GCACGTTAGGTTGTGATTCACA 59.454 45.455 15.41 15.41 43.02 3.58
71 72 3.188460 GCACGTTAGGTTGTGATTCACAT 59.812 43.478 19.63 8.31 44.16 3.21
72 73 4.711721 CACGTTAGGTTGTGATTCACATG 58.288 43.478 19.63 8.99 44.16 3.21
73 74 3.188460 ACGTTAGGTTGTGATTCACATGC 59.812 43.478 19.63 14.80 44.16 4.06
74 75 3.436704 CGTTAGGTTGTGATTCACATGCT 59.563 43.478 19.63 8.81 44.16 3.79
75 76 4.436050 CGTTAGGTTGTGATTCACATGCTC 60.436 45.833 19.63 10.63 44.16 4.26
76 77 3.144657 AGGTTGTGATTCACATGCTCA 57.855 42.857 19.63 2.24 44.16 4.26
77 78 3.693807 AGGTTGTGATTCACATGCTCAT 58.306 40.909 19.63 6.71 44.16 2.90
78 79 4.847198 AGGTTGTGATTCACATGCTCATA 58.153 39.130 19.63 0.78 44.16 2.15
79 80 5.443283 AGGTTGTGATTCACATGCTCATAT 58.557 37.500 19.63 0.00 44.16 1.78
80 81 5.889853 AGGTTGTGATTCACATGCTCATATT 59.110 36.000 19.63 0.00 44.16 1.28
81 82 7.056006 AGGTTGTGATTCACATGCTCATATTA 58.944 34.615 19.63 0.00 44.16 0.98
82 83 7.557358 AGGTTGTGATTCACATGCTCATATTAA 59.443 33.333 19.63 0.00 44.16 1.40
83 84 8.355169 GGTTGTGATTCACATGCTCATATTAAT 58.645 33.333 19.63 0.00 44.16 1.40
120 121 5.981174 CAAATGTTTGTCAAATCTTGCCTG 58.019 37.500 0.40 0.00 33.59 4.85
121 122 4.942761 ATGTTTGTCAAATCTTGCCTGT 57.057 36.364 0.40 0.00 0.00 4.00
122 123 4.044336 TGTTTGTCAAATCTTGCCTGTG 57.956 40.909 0.40 0.00 0.00 3.66
123 124 3.698539 TGTTTGTCAAATCTTGCCTGTGA 59.301 39.130 0.40 0.00 0.00 3.58
124 125 4.341806 TGTTTGTCAAATCTTGCCTGTGAT 59.658 37.500 0.40 0.00 0.00 3.06
125 126 5.163426 TGTTTGTCAAATCTTGCCTGTGATT 60.163 36.000 0.40 0.00 34.75 2.57
126 127 5.534207 TTGTCAAATCTTGCCTGTGATTT 57.466 34.783 0.00 0.00 41.75 2.17
127 128 6.647334 TTGTCAAATCTTGCCTGTGATTTA 57.353 33.333 0.00 0.00 39.85 1.40
128 129 6.012658 TGTCAAATCTTGCCTGTGATTTAC 57.987 37.500 0.00 0.00 39.85 2.01
129 130 5.534278 TGTCAAATCTTGCCTGTGATTTACA 59.466 36.000 0.00 0.00 39.85 2.41
130 131 6.209192 TGTCAAATCTTGCCTGTGATTTACAT 59.791 34.615 0.00 0.00 39.85 2.29
131 132 7.392953 TGTCAAATCTTGCCTGTGATTTACATA 59.607 33.333 0.00 0.00 39.85 2.29
132 133 8.408601 GTCAAATCTTGCCTGTGATTTACATAT 58.591 33.333 0.00 0.00 39.85 1.78
133 134 8.623903 TCAAATCTTGCCTGTGATTTACATATC 58.376 33.333 0.00 0.00 39.85 1.63
134 135 8.407832 CAAATCTTGCCTGTGATTTACATATCA 58.592 33.333 0.00 0.00 39.85 2.15
135 136 8.523915 AATCTTGCCTGTGATTTACATATCAA 57.476 30.769 0.00 0.00 38.92 2.57
136 137 7.936496 TCTTGCCTGTGATTTACATATCAAA 57.064 32.000 0.00 0.00 38.92 2.69
137 138 8.523915 TCTTGCCTGTGATTTACATATCAAAT 57.476 30.769 0.00 0.00 38.92 2.32
138 139 8.970020 TCTTGCCTGTGATTTACATATCAAATT 58.030 29.630 0.00 0.00 38.92 1.82
139 140 9.241317 CTTGCCTGTGATTTACATATCAAATTC 57.759 33.333 0.00 0.00 38.92 2.17
140 141 8.291191 TGCCTGTGATTTACATATCAAATTCA 57.709 30.769 0.00 0.00 38.92 2.57
141 142 8.747471 TGCCTGTGATTTACATATCAAATTCAA 58.253 29.630 0.00 0.00 38.92 2.69
142 143 9.585099 GCCTGTGATTTACATATCAAATTCAAA 57.415 29.630 0.00 0.00 38.92 2.69
176 177 9.464714 TTTTTGACGCTCTTAGCTCTTATATAG 57.535 33.333 0.00 0.00 39.60 1.31
177 178 7.747155 TTGACGCTCTTAGCTCTTATATAGT 57.253 36.000 0.00 0.00 39.60 2.12
178 179 8.843885 TTGACGCTCTTAGCTCTTATATAGTA 57.156 34.615 0.00 0.00 39.60 1.82
179 180 9.451002 TTGACGCTCTTAGCTCTTATATAGTAT 57.549 33.333 0.00 0.00 39.60 2.12
180 181 8.884726 TGACGCTCTTAGCTCTTATATAGTATG 58.115 37.037 0.00 0.00 39.60 2.39
181 182 9.100554 GACGCTCTTAGCTCTTATATAGTATGA 57.899 37.037 0.00 0.00 39.60 2.15
182 183 9.621629 ACGCTCTTAGCTCTTATATAGTATGAT 57.378 33.333 0.00 0.00 39.60 2.45
183 184 9.877137 CGCTCTTAGCTCTTATATAGTATGATG 57.123 37.037 0.00 0.00 39.60 3.07
190 191 8.535335 AGCTCTTATATAGTATGATGTGTTGGG 58.465 37.037 0.00 0.00 0.00 4.12
191 192 8.314751 GCTCTTATATAGTATGATGTGTTGGGT 58.685 37.037 0.00 0.00 0.00 4.51
196 197 8.792830 ATATAGTATGATGTGTTGGGTTATGC 57.207 34.615 0.00 0.00 0.00 3.14
197 198 4.854173 AGTATGATGTGTTGGGTTATGCA 58.146 39.130 0.00 0.00 0.00 3.96
198 199 5.448654 AGTATGATGTGTTGGGTTATGCAT 58.551 37.500 3.79 3.79 0.00 3.96
199 200 4.659111 ATGATGTGTTGGGTTATGCATG 57.341 40.909 10.16 0.00 0.00 4.06
200 201 2.759535 TGATGTGTTGGGTTATGCATGG 59.240 45.455 10.16 0.00 0.00 3.66
201 202 2.300956 TGTGTTGGGTTATGCATGGT 57.699 45.000 10.16 0.00 0.00 3.55
202 203 3.441500 TGTGTTGGGTTATGCATGGTA 57.558 42.857 10.16 0.00 0.00 3.25
203 204 3.085533 TGTGTTGGGTTATGCATGGTAC 58.914 45.455 10.16 4.70 0.00 3.34
204 205 2.096819 GTGTTGGGTTATGCATGGTACG 59.903 50.000 10.16 0.00 0.00 3.67
205 206 2.290387 TGTTGGGTTATGCATGGTACGT 60.290 45.455 10.16 0.00 0.00 3.57
206 207 3.055312 TGTTGGGTTATGCATGGTACGTA 60.055 43.478 10.16 0.00 0.00 3.57
207 208 3.908643 TGGGTTATGCATGGTACGTAA 57.091 42.857 10.16 0.00 0.00 3.18
208 209 4.217836 TGGGTTATGCATGGTACGTAAA 57.782 40.909 10.16 0.00 0.00 2.01
209 210 4.783055 TGGGTTATGCATGGTACGTAAAT 58.217 39.130 10.16 0.00 0.00 1.40
210 211 5.194432 TGGGTTATGCATGGTACGTAAATT 58.806 37.500 10.16 0.00 0.00 1.82
211 212 6.354938 TGGGTTATGCATGGTACGTAAATTA 58.645 36.000 10.16 0.00 0.00 1.40
212 213 6.999272 TGGGTTATGCATGGTACGTAAATTAT 59.001 34.615 10.16 0.00 0.00 1.28
213 214 7.041030 TGGGTTATGCATGGTACGTAAATTATG 60.041 37.037 10.16 1.30 0.00 1.90
214 215 7.173562 GGGTTATGCATGGTACGTAAATTATGA 59.826 37.037 10.16 0.00 0.00 2.15
215 216 8.561212 GGTTATGCATGGTACGTAAATTATGAA 58.439 33.333 10.16 0.00 0.00 2.57
216 217 9.938670 GTTATGCATGGTACGTAAATTATGAAA 57.061 29.630 10.16 0.00 0.00 2.69
238 239 9.877178 TGAAATTAACAGAAAAAGGCAAGTAAA 57.123 25.926 0.00 0.00 0.00 2.01
245 246 9.830975 AACAGAAAAAGGCAAGTAAATTACAAT 57.169 25.926 5.89 0.00 0.00 2.71
246 247 9.260002 ACAGAAAAAGGCAAGTAAATTACAATG 57.740 29.630 5.89 5.42 0.00 2.82
247 248 8.223100 CAGAAAAAGGCAAGTAAATTACAATGC 58.777 33.333 19.12 19.12 40.69 3.56
248 249 8.150296 AGAAAAAGGCAAGTAAATTACAATGCT 58.850 29.630 23.36 12.95 40.98 3.79
249 250 9.418045 GAAAAAGGCAAGTAAATTACAATGCTA 57.582 29.630 23.36 0.00 40.98 3.49
250 251 8.757164 AAAAGGCAAGTAAATTACAATGCTAC 57.243 30.769 23.36 13.71 40.98 3.58
251 252 7.461182 AAGGCAAGTAAATTACAATGCTACA 57.539 32.000 23.36 0.00 40.98 2.74
252 253 7.645058 AGGCAAGTAAATTACAATGCTACAT 57.355 32.000 23.36 11.53 40.98 2.29
253 254 7.483307 AGGCAAGTAAATTACAATGCTACATG 58.517 34.615 23.36 0.00 40.98 3.21
254 255 7.339212 AGGCAAGTAAATTACAATGCTACATGA 59.661 33.333 23.36 0.00 40.98 3.07
255 256 7.973388 GGCAAGTAAATTACAATGCTACATGAA 59.027 33.333 23.36 0.00 40.98 2.57
256 257 9.352784 GCAAGTAAATTACAATGCTACATGAAA 57.647 29.630 19.68 0.00 39.31 2.69
267 268 9.926158 ACAATGCTACATGAAATTAACATCAAA 57.074 25.926 0.00 0.00 0.00 2.69
329 330 8.863872 AGTAAATTAAGGTGATTGCTTAGTGT 57.136 30.769 0.00 0.00 0.00 3.55
330 331 9.953565 AGTAAATTAAGGTGATTGCTTAGTGTA 57.046 29.630 0.00 0.00 0.00 2.90
331 332 9.983804 GTAAATTAAGGTGATTGCTTAGTGTAC 57.016 33.333 0.00 0.00 0.00 2.90
332 333 8.630054 AAATTAAGGTGATTGCTTAGTGTACA 57.370 30.769 0.00 0.00 0.00 2.90
333 334 8.807948 AATTAAGGTGATTGCTTAGTGTACAT 57.192 30.769 0.00 0.00 0.00 2.29
334 335 7.609760 TTAAGGTGATTGCTTAGTGTACATG 57.390 36.000 0.00 0.00 0.00 3.21
380 381 2.758423 GGAACAATAAAACCGGCTGGAT 59.242 45.455 21.41 2.40 39.21 3.41
392 394 0.526211 GGCTGGATGAAAAACCCGAC 59.474 55.000 0.00 0.00 0.00 4.79
411 413 1.045350 CGGAGGGGCTTGATGAGAGA 61.045 60.000 0.00 0.00 0.00 3.10
420 422 2.765699 GCTTGATGAGAGAGGAGGAAGT 59.234 50.000 0.00 0.00 0.00 3.01
428 430 3.103742 AGAGAGGAGGAAGTGGTTGATC 58.896 50.000 0.00 0.00 0.00 2.92
432 434 2.982488 AGGAGGAAGTGGTTGATCAAGT 59.018 45.455 8.80 0.00 0.00 3.16
439 441 6.013379 AGGAAGTGGTTGATCAAGTATTCTGA 60.013 38.462 8.80 0.00 0.00 3.27
442 444 4.330074 GTGGTTGATCAAGTATTCTGACGG 59.670 45.833 8.80 0.00 0.00 4.79
443 445 3.309954 GGTTGATCAAGTATTCTGACGGC 59.690 47.826 8.80 0.00 0.00 5.68
444 446 3.885724 TGATCAAGTATTCTGACGGCA 57.114 42.857 0.00 0.00 0.00 5.69
445 447 3.785486 TGATCAAGTATTCTGACGGCAG 58.215 45.455 13.65 13.65 43.67 4.85
466 468 5.628134 CAGAAAAAGGAACCTTACGTATGC 58.372 41.667 6.53 0.00 34.84 3.14
471 473 7.933215 AAAAGGAACCTTACGTATGCTTTAT 57.067 32.000 12.05 3.30 33.17 1.40
475 477 7.558604 AGGAACCTTACGTATGCTTTATGTAA 58.441 34.615 0.00 9.97 0.00 2.41
478 480 9.520204 GAACCTTACGTATGCTTTATGTAAGTA 57.480 33.333 23.28 0.00 41.73 2.24
485 487 9.464714 ACGTATGCTTTATGTAAGTAAGAGATG 57.535 33.333 0.00 0.00 36.19 2.90
503 505 5.536161 AGAGATGAAGATAAGGACAGAGAGC 59.464 44.000 0.00 0.00 0.00 4.09
514 521 4.973168 AGGACAGAGAGCAGTAGAGATAG 58.027 47.826 0.00 0.00 0.00 2.08
564 574 9.938670 GATATTGATATAGATACAGACACGTCC 57.061 37.037 0.00 0.00 0.00 4.79
565 575 7.761038 ATTGATATAGATACAGACACGTCCA 57.239 36.000 0.00 0.00 0.00 4.02
566 576 7.576861 TTGATATAGATACAGACACGTCCAA 57.423 36.000 0.00 0.00 0.00 3.53
567 577 7.576861 TGATATAGATACAGACACGTCCAAA 57.423 36.000 0.00 0.00 0.00 3.28
568 578 8.002984 TGATATAGATACAGACACGTCCAAAA 57.997 34.615 0.00 0.00 0.00 2.44
569 579 8.638873 TGATATAGATACAGACACGTCCAAAAT 58.361 33.333 0.00 0.00 0.00 1.82
570 580 9.477484 GATATAGATACAGACACGTCCAAAATT 57.523 33.333 0.00 0.00 0.00 1.82
572 582 8.873215 ATAGATACAGACACGTCCAAAATTAG 57.127 34.615 0.00 0.00 0.00 1.73
573 583 6.106673 AGATACAGACACGTCCAAAATTAGG 58.893 40.000 0.00 0.00 0.00 2.69
574 584 4.081322 ACAGACACGTCCAAAATTAGGT 57.919 40.909 0.00 0.00 0.00 3.08
575 585 5.217978 ACAGACACGTCCAAAATTAGGTA 57.782 39.130 0.00 0.00 0.00 3.08
576 586 4.992951 ACAGACACGTCCAAAATTAGGTAC 59.007 41.667 0.00 0.00 0.00 3.34
577 587 4.992319 CAGACACGTCCAAAATTAGGTACA 59.008 41.667 0.00 0.00 0.00 2.90
578 588 5.642063 CAGACACGTCCAAAATTAGGTACAT 59.358 40.000 0.00 0.00 0.00 2.29
579 589 6.814644 CAGACACGTCCAAAATTAGGTACATA 59.185 38.462 0.00 0.00 0.00 2.29
580 590 6.815142 AGACACGTCCAAAATTAGGTACATAC 59.185 38.462 0.00 0.00 0.00 2.39
581 591 6.704310 ACACGTCCAAAATTAGGTACATACT 58.296 36.000 0.00 0.00 0.00 2.12
582 592 6.815142 ACACGTCCAAAATTAGGTACATACTC 59.185 38.462 0.00 0.00 0.00 2.59
583 593 6.257193 CACGTCCAAAATTAGGTACATACTCC 59.743 42.308 0.00 0.00 0.00 3.85
584 594 5.756833 CGTCCAAAATTAGGTACATACTCCC 59.243 44.000 0.00 0.00 0.00 4.30
585 595 6.407752 CGTCCAAAATTAGGTACATACTCCCT 60.408 42.308 0.00 0.00 0.00 4.20
586 596 6.990939 GTCCAAAATTAGGTACATACTCCCTC 59.009 42.308 0.00 0.00 0.00 4.30
587 597 6.906901 TCCAAAATTAGGTACATACTCCCTCT 59.093 38.462 0.00 0.00 0.00 3.69
588 598 6.992715 CCAAAATTAGGTACATACTCCCTCTG 59.007 42.308 0.00 0.00 0.00 3.35
589 599 7.365652 CCAAAATTAGGTACATACTCCCTCTGT 60.366 40.741 0.00 0.00 0.00 3.41
590 600 7.750947 AAATTAGGTACATACTCCCTCTGTT 57.249 36.000 0.00 0.00 0.00 3.16
591 601 6.980416 ATTAGGTACATACTCCCTCTGTTC 57.020 41.667 0.00 0.00 0.00 3.18
592 602 3.644335 AGGTACATACTCCCTCTGTTCC 58.356 50.000 0.00 0.00 32.34 3.62
593 603 2.361438 GGTACATACTCCCTCTGTTCCG 59.639 54.545 0.00 0.00 0.00 4.30
594 604 2.526888 ACATACTCCCTCTGTTCCGA 57.473 50.000 0.00 0.00 0.00 4.55
595 605 2.816411 ACATACTCCCTCTGTTCCGAA 58.184 47.619 0.00 0.00 0.00 4.30
596 606 3.375699 ACATACTCCCTCTGTTCCGAAT 58.624 45.455 0.00 0.00 0.00 3.34
597 607 3.775316 ACATACTCCCTCTGTTCCGAATT 59.225 43.478 0.00 0.00 0.00 2.17
598 608 4.960469 ACATACTCCCTCTGTTCCGAATTA 59.040 41.667 0.00 0.00 0.00 1.40
599 609 3.889520 ACTCCCTCTGTTCCGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
600 610 3.442076 ACTCCCTCTGTTCCGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
601 611 3.838903 ACTCCCTCTGTTCCGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
602 612 4.184629 CTCCCTCTGTTCCGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
603 613 3.581332 TCCCTCTGTTCCGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
604 614 3.933332 CCCTCTGTTCCGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
605 615 4.562757 CCCTCTGTTCCGAATTACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
606 616 4.389077 CCTCTGTTCCGAATTACTTGTCAC 59.611 45.833 0.00 0.00 0.00 3.67
607 617 3.985279 TCTGTTCCGAATTACTTGTCACG 59.015 43.478 0.00 0.00 0.00 4.35
608 618 3.979948 TGTTCCGAATTACTTGTCACGA 58.020 40.909 0.00 0.00 0.00 4.35
609 619 3.985279 TGTTCCGAATTACTTGTCACGAG 59.015 43.478 0.00 0.00 0.00 4.18
610 620 3.928727 TCCGAATTACTTGTCACGAGT 57.071 42.857 2.41 2.41 0.00 4.18
611 621 5.156355 GTTCCGAATTACTTGTCACGAGTA 58.844 41.667 0.12 0.12 0.00 2.59
612 622 5.571784 TCCGAATTACTTGTCACGAGTAT 57.428 39.130 5.69 0.00 30.30 2.12
613 623 5.337554 TCCGAATTACTTGTCACGAGTATG 58.662 41.667 5.69 0.00 30.30 2.39
614 624 4.503007 CCGAATTACTTGTCACGAGTATGG 59.497 45.833 5.69 2.95 30.30 2.74
615 625 5.337554 CGAATTACTTGTCACGAGTATGGA 58.662 41.667 5.69 0.00 30.30 3.41
616 626 5.977725 CGAATTACTTGTCACGAGTATGGAT 59.022 40.000 5.69 0.00 30.30 3.41
617 627 6.074835 CGAATTACTTGTCACGAGTATGGATG 60.075 42.308 5.69 0.00 30.30 3.51
618 628 5.654603 TTACTTGTCACGAGTATGGATGT 57.345 39.130 5.69 0.00 30.30 3.06
619 629 6.762702 TTACTTGTCACGAGTATGGATGTA 57.237 37.500 5.69 0.00 30.30 2.29
620 630 5.854010 ACTTGTCACGAGTATGGATGTAT 57.146 39.130 0.00 0.00 0.00 2.29
621 631 5.833082 ACTTGTCACGAGTATGGATGTATC 58.167 41.667 0.00 0.00 0.00 2.24
622 632 5.594725 ACTTGTCACGAGTATGGATGTATCT 59.405 40.000 0.00 0.00 0.00 1.98
623 633 6.771267 ACTTGTCACGAGTATGGATGTATCTA 59.229 38.462 0.00 0.00 0.00 1.98
624 634 6.803154 TGTCACGAGTATGGATGTATCTAG 57.197 41.667 0.00 0.00 0.00 2.43
625 635 6.531021 TGTCACGAGTATGGATGTATCTAGA 58.469 40.000 0.00 0.00 0.00 2.43
626 636 7.168905 TGTCACGAGTATGGATGTATCTAGAT 58.831 38.462 10.73 10.73 0.00 1.98
627 637 7.119846 TGTCACGAGTATGGATGTATCTAGATG 59.880 40.741 15.79 0.00 0.00 2.90
628 638 7.119992 GTCACGAGTATGGATGTATCTAGATGT 59.880 40.741 15.79 1.25 0.00 3.06
629 639 8.319146 TCACGAGTATGGATGTATCTAGATGTA 58.681 37.037 15.79 4.44 0.00 2.29
630 640 9.114952 CACGAGTATGGATGTATCTAGATGTAT 57.885 37.037 15.79 9.11 0.00 2.29
631 641 9.688091 ACGAGTATGGATGTATCTAGATGTATT 57.312 33.333 15.79 0.00 0.00 1.89
658 668 9.781834 TTAGTTCTAAATACATCCATTTTTGCG 57.218 29.630 0.00 0.00 30.84 4.85
659 669 8.050778 AGTTCTAAATACATCCATTTTTGCGA 57.949 30.769 0.00 0.00 30.84 5.10
660 670 7.968405 AGTTCTAAATACATCCATTTTTGCGAC 59.032 33.333 0.00 0.00 30.84 5.19
661 671 6.482835 TCTAAATACATCCATTTTTGCGACG 58.517 36.000 0.00 0.00 30.84 5.12
662 672 4.955925 AATACATCCATTTTTGCGACGA 57.044 36.364 0.00 0.00 0.00 4.20
663 673 4.955925 ATACATCCATTTTTGCGACGAA 57.044 36.364 0.00 0.00 0.00 3.85
664 674 3.848272 ACATCCATTTTTGCGACGAAT 57.152 38.095 0.00 0.00 0.00 3.34
665 675 4.955925 ACATCCATTTTTGCGACGAATA 57.044 36.364 0.00 0.00 0.00 1.75
666 676 5.303747 ACATCCATTTTTGCGACGAATAA 57.696 34.783 0.00 0.00 0.00 1.40
667 677 5.890334 ACATCCATTTTTGCGACGAATAAT 58.110 33.333 0.00 0.00 0.00 1.28
668 678 6.329496 ACATCCATTTTTGCGACGAATAATT 58.671 32.000 0.00 0.00 0.00 1.40
669 679 6.811170 ACATCCATTTTTGCGACGAATAATTT 59.189 30.769 0.00 0.00 0.00 1.82
670 680 6.624710 TCCATTTTTGCGACGAATAATTTG 57.375 33.333 0.00 0.00 0.00 2.32
671 681 5.574830 TCCATTTTTGCGACGAATAATTTGG 59.425 36.000 0.00 0.84 0.00 3.28
672 682 5.574830 CCATTTTTGCGACGAATAATTTGGA 59.425 36.000 0.00 0.00 0.00 3.53
673 683 6.090088 CCATTTTTGCGACGAATAATTTGGAA 59.910 34.615 0.00 0.00 0.00 3.53
674 684 6.441099 TTTTTGCGACGAATAATTTGGAAC 57.559 33.333 0.00 0.00 0.00 3.62
675 685 3.377434 TGCGACGAATAATTTGGAACG 57.623 42.857 0.00 0.00 0.00 3.95
676 686 2.094575 TGCGACGAATAATTTGGAACGG 59.905 45.455 0.00 0.00 0.00 4.44
677 687 2.349275 GCGACGAATAATTTGGAACGGA 59.651 45.455 0.00 0.00 0.00 4.69
678 688 3.181518 GCGACGAATAATTTGGAACGGAA 60.182 43.478 0.00 0.00 0.00 4.30
679 689 4.669708 GCGACGAATAATTTGGAACGGAAA 60.670 41.667 0.00 0.00 0.00 3.13
680 690 5.019498 CGACGAATAATTTGGAACGGAAAG 58.981 41.667 0.00 0.00 0.00 2.62
681 691 5.163933 CGACGAATAATTTGGAACGGAAAGA 60.164 40.000 0.00 0.00 0.00 2.52
682 692 6.178239 ACGAATAATTTGGAACGGAAAGAG 57.822 37.500 0.00 0.00 0.00 2.85
683 693 5.704053 ACGAATAATTTGGAACGGAAAGAGT 59.296 36.000 0.00 0.00 0.00 3.24
684 694 6.875195 ACGAATAATTTGGAACGGAAAGAGTA 59.125 34.615 0.00 0.00 0.00 2.59
685 695 7.551617 ACGAATAATTTGGAACGGAAAGAGTAT 59.448 33.333 0.00 0.00 0.00 2.12
686 696 9.037737 CGAATAATTTGGAACGGAAAGAGTATA 57.962 33.333 0.00 0.00 0.00 1.47
691 701 9.765795 AATTTGGAACGGAAAGAGTATATCTAG 57.234 33.333 0.00 0.00 37.23 2.43
692 702 8.529424 TTTGGAACGGAAAGAGTATATCTAGA 57.471 34.615 0.00 0.00 37.23 2.43
693 703 8.707796 TTGGAACGGAAAGAGTATATCTAGAT 57.292 34.615 10.73 10.73 37.23 1.98
694 704 8.707796 TGGAACGGAAAGAGTATATCTAGATT 57.292 34.615 11.25 1.81 37.23 2.40
695 705 9.803507 TGGAACGGAAAGAGTATATCTAGATTA 57.196 33.333 11.25 0.85 37.23 1.75
707 717 9.105844 AGTATATCTAGATTACCACCATGCTTT 57.894 33.333 11.25 0.00 0.00 3.51
725 738 9.643693 CCATGCTTTATTAAGTTCAGTGAAAAT 57.356 29.630 7.25 6.81 33.74 1.82
738 751 9.014297 AGTTCAGTGAAAATACCCTTTATTGAG 57.986 33.333 7.25 0.00 0.00 3.02
742 755 8.887717 CAGTGAAAATACCCTTTATTGAGAGAG 58.112 37.037 0.00 0.00 0.00 3.20
744 757 9.103861 GTGAAAATACCCTTTATTGAGAGAGAG 57.896 37.037 0.00 0.00 0.00 3.20
746 759 9.541143 GAAAATACCCTTTATTGAGAGAGAGAG 57.459 37.037 0.00 0.00 0.00 3.20
759 772 4.241681 AGAGAGAGAGAATCGCAAAACAC 58.758 43.478 0.00 0.00 42.67 3.32
764 777 3.964909 AGAGAATCGCAAAACACCAAAC 58.035 40.909 0.00 0.00 42.67 2.93
787 800 1.260561 GCAAGAGTACACCAACACACG 59.739 52.381 0.00 0.00 0.00 4.49
863 877 2.983592 CACCAACCCGCAACCTCC 60.984 66.667 0.00 0.00 0.00 4.30
864 878 3.175710 ACCAACCCGCAACCTCCT 61.176 61.111 0.00 0.00 0.00 3.69
886 900 2.898181 TTTGTACAGATGCATGCACG 57.102 45.000 25.37 16.92 0.00 5.34
887 901 0.447406 TTGTACAGATGCATGCACGC 59.553 50.000 25.37 18.20 0.00 5.34
888 902 1.011904 GTACAGATGCATGCACGCG 60.012 57.895 25.37 16.16 33.35 6.01
889 903 2.812122 TACAGATGCATGCACGCGC 61.812 57.895 25.37 12.82 39.24 6.86
890 904 4.899687 CAGATGCATGCACGCGCC 62.900 66.667 25.37 9.95 37.32 6.53
915 934 1.886422 GACTCCCTCCATTTCTCCCT 58.114 55.000 0.00 0.00 0.00 4.20
928 947 2.607750 TCCCTCACCTGGTCTGCC 60.608 66.667 0.00 0.00 0.00 4.85
995 1014 2.430921 GTGAGCGTGACGACCCAG 60.431 66.667 10.10 0.00 0.00 4.45
1575 1606 1.070786 GGAGCTGGACACGGTGAAA 59.929 57.895 16.29 0.00 0.00 2.69
1677 1708 4.194720 GGCATCGACCTCGCGACT 62.195 66.667 3.71 0.00 43.79 4.18
1689 1723 1.455786 CTCGCGACTAACAACACCAAG 59.544 52.381 3.71 0.00 0.00 3.61
1900 1934 3.368571 GCTTGCACAGCTGGGACC 61.369 66.667 23.23 2.78 46.27 4.46
2035 2075 2.755103 GGCCTGTACATCAAGAAAAGGG 59.245 50.000 0.00 0.00 0.00 3.95
2364 2426 3.612472 CTCGGTAAGGAATCGTCTCTC 57.388 52.381 0.00 0.00 0.00 3.20
2365 2427 3.207778 CTCGGTAAGGAATCGTCTCTCT 58.792 50.000 0.00 0.00 0.00 3.10
2366 2428 3.204526 TCGGTAAGGAATCGTCTCTCTC 58.795 50.000 0.00 0.00 0.00 3.20
2368 2430 3.249080 CGGTAAGGAATCGTCTCTCTCTC 59.751 52.174 0.00 0.00 0.00 3.20
2385 2447 2.804527 CTCTCTCTCTGCTCATCTCTCG 59.195 54.545 0.00 0.00 0.00 4.04
2434 2496 7.375106 CTCTGTTTTAGAGTGCTTGATTGAT 57.625 36.000 0.00 0.00 46.45 2.57
2545 2609 7.698550 GCTGATAAAAGTAGCCTAAAAAGAAGC 59.301 37.037 0.00 0.00 0.00 3.86
2548 2612 5.378292 AAAGTAGCCTAAAAAGAAGCTGC 57.622 39.130 0.00 0.00 38.12 5.25
2549 2613 3.348119 AGTAGCCTAAAAAGAAGCTGCC 58.652 45.455 0.00 0.00 38.55 4.85
2550 2614 2.292828 AGCCTAAAAAGAAGCTGCCA 57.707 45.000 0.00 0.00 33.41 4.92
2551 2615 2.597455 AGCCTAAAAAGAAGCTGCCAA 58.403 42.857 0.00 0.00 33.41 4.52
2552 2616 2.965147 AGCCTAAAAAGAAGCTGCCAAA 59.035 40.909 0.00 0.00 33.41 3.28
2553 2617 3.387699 AGCCTAAAAAGAAGCTGCCAAAA 59.612 39.130 0.00 0.00 33.41 2.44
2554 2618 3.742882 GCCTAAAAAGAAGCTGCCAAAAG 59.257 43.478 0.00 0.00 0.00 2.27
2555 2619 3.742882 CCTAAAAAGAAGCTGCCAAAAGC 59.257 43.478 0.00 0.00 43.88 3.51
2611 2675 8.567104 GTGAACTTTTGATTATGCCCAATTTTT 58.433 29.630 0.00 0.00 0.00 1.94
2641 2705 2.224079 GCGTGAAGAATGAGTTGCTCAA 59.776 45.455 2.80 0.00 44.04 3.02
2666 2730 1.795962 CGGAAATGTCAAACGCCGC 60.796 57.895 0.00 0.00 31.80 6.53
2687 3967 5.452776 CCGCCTATGGATAGACAAAAGTACA 60.453 44.000 0.00 0.00 32.05 2.90
2749 4051 7.308770 CGAGATACTGACGGTATAATAAACCCA 60.309 40.741 6.92 0.00 40.82 4.51
2784 4086 8.142485 ACCTTACCAAGAATTTAGTACTGCTA 57.858 34.615 5.39 0.00 0.00 3.49
2791 4093 9.915629 CCAAGAATTTAGTACTGCTAGTATAGG 57.084 37.037 5.39 0.00 39.70 2.57
2822 4135 1.371183 CTGACGGCTCCAGTTGGAA 59.629 57.895 1.99 0.00 44.91 3.53
2888 4220 8.579850 TTGCTAATATGATATGGTTTGGGATC 57.420 34.615 0.00 0.00 0.00 3.36
2889 4221 7.697946 TGCTAATATGATATGGTTTGGGATCA 58.302 34.615 0.00 0.00 33.09 2.92
2891 4223 8.627403 GCTAATATGATATGGTTTGGGATCATG 58.373 37.037 6.49 0.00 38.98 3.07
2894 4226 9.778479 AATATGATATGGTTTGGGATCATGATT 57.222 29.630 10.14 0.00 38.98 2.57
2895 4227 6.904463 TGATATGGTTTGGGATCATGATTG 57.096 37.500 10.14 0.00 0.00 2.67
2898 4469 7.564292 TGATATGGTTTGGGATCATGATTGAAA 59.436 33.333 10.14 6.63 34.96 2.69
2923 4531 2.363680 TGCATATAACAAAATGCCCGGG 59.636 45.455 19.09 19.09 46.34 5.73
2931 4539 1.898330 AAAATGCCCGGGATGCCAAC 61.898 55.000 29.31 4.52 0.00 3.77
2965 4573 0.393820 TTTGACCCGTCCACAGTACC 59.606 55.000 0.00 0.00 0.00 3.34
2967 4575 0.405198 TGACCCGTCCACAGTACCTA 59.595 55.000 0.00 0.00 0.00 3.08
2985 4593 4.662278 ACCTAATGCTTTACTGGCTTTGA 58.338 39.130 0.00 0.00 0.00 2.69
2989 4597 4.978083 ATGCTTTACTGGCTTTGAGATG 57.022 40.909 0.00 0.00 0.00 2.90
2990 4598 3.754965 TGCTTTACTGGCTTTGAGATGT 58.245 40.909 0.00 0.00 0.00 3.06
3032 4643 4.648651 ACTGTTTGGTGGTACTATGGTTC 58.351 43.478 0.00 0.00 0.00 3.62
3033 4644 4.103469 ACTGTTTGGTGGTACTATGGTTCA 59.897 41.667 0.00 0.00 0.00 3.18
3052 4663 0.894835 AAAAGTATGCCGGGCAAAGG 59.105 50.000 27.70 0.00 43.62 3.11
3175 7231 1.448540 GCTGCTGCTGGTGTACGAT 60.449 57.895 8.53 0.00 36.03 3.73
3875 7952 3.122250 GACGACGACGGGGAGATGG 62.122 68.421 12.58 0.00 44.46 3.51
3877 7954 4.222847 GACGACGGGGAGATGGCC 62.223 72.222 0.00 0.00 0.00 5.36
3931 8008 1.349973 GTCGTACTACGCCTCGTCC 59.650 63.158 3.57 0.00 42.21 4.79
3934 8011 3.204827 TACTACGCCTCGTCCGCC 61.205 66.667 0.00 0.00 41.54 6.13
3980 8057 4.742201 CCAGGGAGCACGACGTGG 62.742 72.222 27.86 10.95 36.45 4.94
4084 8162 1.583967 GCGAGCGGGATCGATATCG 60.584 63.158 19.14 19.14 45.56 2.92
4176 8254 0.450583 GTGATCAGTGTGCATGCCAG 59.549 55.000 16.68 2.44 0.00 4.85
4241 8491 8.959676 TTTTATTTCTGGGTTAAAGTGGGTAT 57.040 30.769 0.00 0.00 0.00 2.73
4243 8493 9.465199 TTTATTTCTGGGTTAAAGTGGGTATAC 57.535 33.333 0.00 0.00 0.00 1.47
4244 8494 6.707273 TTTCTGGGTTAAAGTGGGTATACT 57.293 37.500 2.25 0.00 0.00 2.12
4245 8495 6.707273 TTCTGGGTTAAAGTGGGTATACTT 57.293 37.500 2.25 0.00 42.43 2.24
4269 8549 8.988064 TTGTAGTACAACTTCAATCTGATCTC 57.012 34.615 11.75 0.00 31.87 2.75
4278 8558 8.459635 CAACTTCAATCTGATCTCATTGTTGAT 58.540 33.333 13.63 0.00 32.67 2.57
4315 8595 1.000052 TGTCCGATTGCGACTGTGTAA 60.000 47.619 0.00 0.00 40.82 2.41
4317 8597 2.671396 GTCCGATTGCGACTGTGTAAAT 59.329 45.455 0.00 0.00 40.82 1.40
4319 8599 4.026804 GTCCGATTGCGACTGTGTAAATAG 60.027 45.833 0.00 0.00 40.82 1.73
4320 8600 3.302480 CCGATTGCGACTGTGTAAATAGC 60.302 47.826 0.00 0.00 40.82 2.97
4321 8601 3.551890 CGATTGCGACTGTGTAAATAGCT 59.448 43.478 0.00 0.00 40.82 3.32
4322 8602 4.738252 CGATTGCGACTGTGTAAATAGCTA 59.262 41.667 0.00 0.00 40.82 3.32
4395 8675 5.241403 TGGCTTTCAATTGGTAGAAGAGA 57.759 39.130 5.42 0.00 0.00 3.10
4400 8680 7.416022 GCTTTCAATTGGTAGAAGAGATGATG 58.584 38.462 5.42 0.00 0.00 3.07
4475 8755 4.119862 GCAATTGCTATTCCTCGTGTAGA 58.880 43.478 23.21 0.00 38.21 2.59
4478 8758 5.791336 ATTGCTATTCCTCGTGTAGATGA 57.209 39.130 0.00 0.00 0.00 2.92
4479 8759 5.592104 TTGCTATTCCTCGTGTAGATGAA 57.408 39.130 0.00 0.00 37.77 2.57
4480 8760 5.592104 TGCTATTCCTCGTGTAGATGAAA 57.408 39.130 0.00 0.00 37.12 2.69
4481 8761 5.348986 TGCTATTCCTCGTGTAGATGAAAC 58.651 41.667 0.00 0.00 37.12 2.78
4484 8764 6.019479 GCTATTCCTCGTGTAGATGAAACAAG 60.019 42.308 0.00 0.00 37.12 3.16
4485 8765 4.188247 TCCTCGTGTAGATGAAACAAGG 57.812 45.455 0.00 0.00 0.00 3.61
4488 8768 4.627467 CCTCGTGTAGATGAAACAAGGAAG 59.373 45.833 0.00 0.00 29.75 3.46
4489 8769 5.209818 TCGTGTAGATGAAACAAGGAAGT 57.790 39.130 0.00 0.00 0.00 3.01
4501 8817 1.415672 AAGGAAGTGCAACCCCGAGA 61.416 55.000 0.00 0.00 37.80 4.04
4514 8830 4.515404 CGAGACGGAAATGGGGAC 57.485 61.111 0.00 0.00 0.00 4.46
4516 8832 1.595357 GAGACGGAAATGGGGACGT 59.405 57.895 0.00 0.00 0.00 4.34
4538 8854 4.814294 GTCGACCGCGGCTTCCAT 62.814 66.667 28.58 3.50 39.48 3.41
4539 8855 4.812476 TCGACCGCGGCTTCCATG 62.812 66.667 28.58 7.29 38.28 3.66
4540 8856 4.812476 CGACCGCGGCTTCCATGA 62.812 66.667 28.58 0.00 0.00 3.07
4591 8907 0.031314 AGACGTCATAGCATCGCCAG 59.969 55.000 19.50 0.00 0.00 4.85
4613 8929 2.457366 AAGGCAAGTCTAGGTTGACG 57.543 50.000 9.27 0.00 38.04 4.35
4626 8942 1.406887 GGTTGACGGTGAGGTGCATAT 60.407 52.381 0.00 0.00 0.00 1.78
4628 8944 0.901827 TGACGGTGAGGTGCATATGT 59.098 50.000 4.29 0.00 0.00 2.29
4635 8951 3.067180 GGTGAGGTGCATATGTTGGATTG 59.933 47.826 4.29 0.00 0.00 2.67
4641 8957 4.082300 GGTGCATATGTTGGATTGTTGTCA 60.082 41.667 4.29 0.00 0.00 3.58
4646 8962 0.593128 GTTGGATTGTTGTCAGCGCT 59.407 50.000 2.64 2.64 0.00 5.92
4684 9000 2.443390 ATGGCCAGGGCATGAAGC 60.443 61.111 27.45 1.65 46.89 3.86
4694 9010 2.093216 GCATGAAGCGACAAGGAGG 58.907 57.895 0.00 0.00 0.00 4.30
4737 9053 1.045350 TGGATCAAGAGGGGAGAGCG 61.045 60.000 0.00 0.00 0.00 5.03
4747 9063 1.687297 GGGGAGAGCGGTAGGAAAGG 61.687 65.000 0.00 0.00 0.00 3.11
4753 9069 2.158143 AGAGCGGTAGGAAAGGGGATAT 60.158 50.000 0.00 0.00 0.00 1.63
4791 9107 6.453092 TGACTAAAGTTTAGAAACCTCCTCG 58.547 40.000 25.87 0.00 39.71 4.63
4827 9143 2.270986 GCCAAAGCAGGACCCACTG 61.271 63.158 0.00 0.00 41.41 3.66
4869 9185 9.772973 TGGTTTATATAGTATGCTTAACACCAG 57.227 33.333 0.00 0.00 0.00 4.00
4870 9186 9.774413 GGTTTATATAGTATGCTTAACACCAGT 57.226 33.333 0.00 0.00 0.00 4.00
4888 9204 7.360575 CACCAGTTGTGTAAGAACCTAATAC 57.639 40.000 0.00 0.00 41.75 1.89
4889 9205 6.090358 CACCAGTTGTGTAAGAACCTAATACG 59.910 42.308 0.00 0.00 41.75 3.06
4890 9206 6.015180 ACCAGTTGTGTAAGAACCTAATACGA 60.015 38.462 0.00 0.00 41.75 3.43
4891 9207 7.039882 CCAGTTGTGTAAGAACCTAATACGAT 58.960 38.462 0.00 0.00 41.75 3.73
4892 9208 7.548075 CCAGTTGTGTAAGAACCTAATACGATT 59.452 37.037 0.00 0.00 41.75 3.34
4893 9209 8.932791 CAGTTGTGTAAGAACCTAATACGATTT 58.067 33.333 0.00 0.00 41.75 2.17
4894 9210 9.498176 AGTTGTGTAAGAACCTAATACGATTTT 57.502 29.630 0.00 0.00 41.75 1.82
4897 9213 9.491675 TGTGTAAGAACCTAATACGATTTTTGA 57.508 29.630 0.00 0.00 0.00 2.69
4903 9219 9.159364 AGAACCTAATACGATTTTTGAACTACC 57.841 33.333 0.00 0.00 0.00 3.18
4904 9220 9.159364 GAACCTAATACGATTTTTGAACTACCT 57.841 33.333 0.00 0.00 0.00 3.08
4910 9226 6.811253 ACGATTTTTGAACTACCTATTGCA 57.189 33.333 0.00 0.00 0.00 4.08
4911 9227 7.391148 ACGATTTTTGAACTACCTATTGCAT 57.609 32.000 0.00 0.00 0.00 3.96
4912 9228 7.826690 ACGATTTTTGAACTACCTATTGCATT 58.173 30.769 0.00 0.00 0.00 3.56
4913 9229 8.303876 ACGATTTTTGAACTACCTATTGCATTT 58.696 29.630 0.00 0.00 0.00 2.32
4914 9230 9.781834 CGATTTTTGAACTACCTATTGCATTTA 57.218 29.630 0.00 0.00 0.00 1.40
4977 9293 9.410556 GTTTGTATTGATATTTTGAAGCTGTGT 57.589 29.630 0.00 0.00 0.00 3.72
4979 9295 8.969121 TGTATTGATATTTTGAAGCTGTGTTG 57.031 30.769 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.369321 GGGCAATTTTTCGGTGCCA 59.631 52.632 15.26 0.00 46.63 4.92
1 2 1.375396 GGGGCAATTTTTCGGTGCC 60.375 57.895 5.33 5.33 44.31 5.01
2 3 1.736282 CGGGGCAATTTTTCGGTGC 60.736 57.895 0.00 0.00 0.00 5.01
3 4 0.882474 TACGGGGCAATTTTTCGGTG 59.118 50.000 0.00 0.00 0.00 4.94
4 5 0.883153 GTACGGGGCAATTTTTCGGT 59.117 50.000 0.00 0.00 0.00 4.69
5 6 0.179184 CGTACGGGGCAATTTTTCGG 60.179 55.000 7.57 0.00 0.00 4.30
6 7 0.518195 ACGTACGGGGCAATTTTTCG 59.482 50.000 21.06 0.00 0.00 3.46
7 8 2.321263 CAACGTACGGGGCAATTTTTC 58.679 47.619 21.06 0.00 0.00 2.29
8 9 1.603425 GCAACGTACGGGGCAATTTTT 60.603 47.619 21.06 0.00 0.00 1.94
9 10 0.038983 GCAACGTACGGGGCAATTTT 60.039 50.000 21.06 0.00 0.00 1.82
10 11 1.173444 TGCAACGTACGGGGCAATTT 61.173 50.000 26.71 6.44 32.54 1.82
11 12 1.173444 TTGCAACGTACGGGGCAATT 61.173 50.000 31.55 11.70 40.94 2.32
12 13 1.601197 TTGCAACGTACGGGGCAAT 60.601 52.632 31.55 6.39 40.94 3.56
13 14 2.203167 TTGCAACGTACGGGGCAA 60.203 55.556 31.55 31.55 43.32 4.52
14 15 2.973600 GTTGCAACGTACGGGGCA 60.974 61.111 25.63 25.63 0.00 5.36
15 16 2.961669 CTGTTGCAACGTACGGGGC 61.962 63.158 23.79 21.45 0.00 5.80
16 17 2.322081 CCTGTTGCAACGTACGGGG 61.322 63.158 23.79 12.02 37.19 5.73
17 18 1.161563 AACCTGTTGCAACGTACGGG 61.162 55.000 23.79 17.62 44.71 5.28
18 19 1.500108 TAACCTGTTGCAACGTACGG 58.500 50.000 23.79 21.14 0.00 4.02
19 20 4.907188 TTATAACCTGTTGCAACGTACG 57.093 40.909 23.79 15.01 0.00 3.67
20 21 9.429600 GAATAATTATAACCTGTTGCAACGTAC 57.570 33.333 23.79 1.83 0.00 3.67
21 22 9.386010 AGAATAATTATAACCTGTTGCAACGTA 57.614 29.630 23.79 13.48 0.00 3.57
22 23 8.276252 AGAATAATTATAACCTGTTGCAACGT 57.724 30.769 23.79 14.07 0.00 3.99
23 24 9.864034 CTAGAATAATTATAACCTGTTGCAACG 57.136 33.333 23.79 17.58 0.00 4.10
24 25 9.665264 GCTAGAATAATTATAACCTGTTGCAAC 57.335 33.333 22.83 22.83 0.00 4.17
25 26 9.402320 TGCTAGAATAATTATAACCTGTTGCAA 57.598 29.630 0.00 0.00 0.00 4.08
26 27 8.836413 GTGCTAGAATAATTATAACCTGTTGCA 58.164 33.333 0.00 0.00 0.00 4.08
27 28 8.009974 CGTGCTAGAATAATTATAACCTGTTGC 58.990 37.037 0.00 0.00 0.00 4.17
28 29 9.042008 ACGTGCTAGAATAATTATAACCTGTTG 57.958 33.333 0.00 0.00 0.00 3.33
29 30 9.609346 AACGTGCTAGAATAATTATAACCTGTT 57.391 29.630 0.00 0.00 0.00 3.16
32 33 9.924650 CCTAACGTGCTAGAATAATTATAACCT 57.075 33.333 0.00 0.04 0.00 3.50
33 34 9.702494 ACCTAACGTGCTAGAATAATTATAACC 57.298 33.333 0.00 0.00 0.00 2.85
37 38 9.042008 CACAACCTAACGTGCTAGAATAATTAT 57.958 33.333 0.00 0.00 0.00 1.28
38 39 8.252417 TCACAACCTAACGTGCTAGAATAATTA 58.748 33.333 0.00 0.00 33.03 1.40
39 40 7.101054 TCACAACCTAACGTGCTAGAATAATT 58.899 34.615 0.00 0.00 33.03 1.40
40 41 6.636705 TCACAACCTAACGTGCTAGAATAAT 58.363 36.000 0.00 0.00 33.03 1.28
41 42 6.028146 TCACAACCTAACGTGCTAGAATAA 57.972 37.500 0.00 0.00 33.03 1.40
42 43 5.648178 TCACAACCTAACGTGCTAGAATA 57.352 39.130 0.00 0.00 33.03 1.75
43 44 4.530710 TCACAACCTAACGTGCTAGAAT 57.469 40.909 0.00 0.00 33.03 2.40
44 45 4.530710 ATCACAACCTAACGTGCTAGAA 57.469 40.909 0.00 0.00 33.03 2.10
45 46 4.021807 TGAATCACAACCTAACGTGCTAGA 60.022 41.667 0.00 0.00 33.03 2.43
46 47 4.091509 GTGAATCACAACCTAACGTGCTAG 59.908 45.833 8.74 0.00 34.08 3.42
47 48 3.991773 GTGAATCACAACCTAACGTGCTA 59.008 43.478 8.74 0.00 34.08 3.49
48 49 2.806244 GTGAATCACAACCTAACGTGCT 59.194 45.455 8.74 0.00 34.08 4.40
49 50 2.546368 TGTGAATCACAACCTAACGTGC 59.454 45.455 14.37 0.00 41.69 5.34
97 98 5.524646 ACAGGCAAGATTTGACAAACATTTG 59.475 36.000 1.94 9.12 42.71 2.32
98 99 5.524646 CACAGGCAAGATTTGACAAACATTT 59.475 36.000 1.94 0.00 42.71 2.32
99 100 5.051816 CACAGGCAAGATTTGACAAACATT 58.948 37.500 1.94 0.00 42.71 2.71
100 101 4.341806 TCACAGGCAAGATTTGACAAACAT 59.658 37.500 1.94 0.00 42.71 2.71
101 102 3.698539 TCACAGGCAAGATTTGACAAACA 59.301 39.130 1.94 0.00 42.71 2.83
102 103 4.305989 TCACAGGCAAGATTTGACAAAC 57.694 40.909 1.94 0.00 42.71 2.93
103 104 5.534207 AATCACAGGCAAGATTTGACAAA 57.466 34.783 2.48 2.48 42.71 2.83
104 105 5.534207 AAATCACAGGCAAGATTTGACAA 57.466 34.783 9.88 0.00 42.71 3.18
105 106 5.534278 TGTAAATCACAGGCAAGATTTGACA 59.466 36.000 16.79 14.08 42.71 3.58
106 107 6.012658 TGTAAATCACAGGCAAGATTTGAC 57.987 37.500 16.79 12.55 42.58 3.18
107 108 6.839124 ATGTAAATCACAGGCAAGATTTGA 57.161 33.333 16.79 7.95 42.58 2.69
108 109 8.407832 TGATATGTAAATCACAGGCAAGATTTG 58.592 33.333 16.79 0.00 42.58 2.32
109 110 8.523915 TGATATGTAAATCACAGGCAAGATTT 57.476 30.769 13.62 13.62 44.24 2.17
110 111 8.523915 TTGATATGTAAATCACAGGCAAGATT 57.476 30.769 0.00 0.00 41.51 2.40
111 112 8.523915 TTTGATATGTAAATCACAGGCAAGAT 57.476 30.769 0.00 0.00 41.51 2.40
112 113 7.936496 TTTGATATGTAAATCACAGGCAAGA 57.064 32.000 0.00 0.00 41.51 3.02
113 114 9.241317 GAATTTGATATGTAAATCACAGGCAAG 57.759 33.333 0.00 0.00 41.51 4.01
114 115 8.747471 TGAATTTGATATGTAAATCACAGGCAA 58.253 29.630 0.00 0.00 41.51 4.52
115 116 8.291191 TGAATTTGATATGTAAATCACAGGCA 57.709 30.769 0.00 0.00 41.51 4.75
116 117 9.585099 TTTGAATTTGATATGTAAATCACAGGC 57.415 29.630 0.00 0.00 41.51 4.85
164 165 8.535335 CCCAACACATCATACTATATAAGAGCT 58.465 37.037 0.00 0.00 0.00 4.09
165 166 8.314751 ACCCAACACATCATACTATATAAGAGC 58.685 37.037 0.00 0.00 0.00 4.09
170 171 9.884636 GCATAACCCAACACATCATACTATATA 57.115 33.333 0.00 0.00 0.00 0.86
171 172 8.382405 TGCATAACCCAACACATCATACTATAT 58.618 33.333 0.00 0.00 0.00 0.86
172 173 7.740805 TGCATAACCCAACACATCATACTATA 58.259 34.615 0.00 0.00 0.00 1.31
173 174 6.600388 TGCATAACCCAACACATCATACTAT 58.400 36.000 0.00 0.00 0.00 2.12
174 175 5.995446 TGCATAACCCAACACATCATACTA 58.005 37.500 0.00 0.00 0.00 1.82
175 176 4.854173 TGCATAACCCAACACATCATACT 58.146 39.130 0.00 0.00 0.00 2.12
176 177 5.507817 CCATGCATAACCCAACACATCATAC 60.508 44.000 0.00 0.00 0.00 2.39
177 178 4.583907 CCATGCATAACCCAACACATCATA 59.416 41.667 0.00 0.00 0.00 2.15
178 179 3.385433 CCATGCATAACCCAACACATCAT 59.615 43.478 0.00 0.00 0.00 2.45
179 180 2.759535 CCATGCATAACCCAACACATCA 59.240 45.455 0.00 0.00 0.00 3.07
180 181 2.760092 ACCATGCATAACCCAACACATC 59.240 45.455 0.00 0.00 0.00 3.06
181 182 2.818921 ACCATGCATAACCCAACACAT 58.181 42.857 0.00 0.00 0.00 3.21
182 183 2.300956 ACCATGCATAACCCAACACA 57.699 45.000 0.00 0.00 0.00 3.72
183 184 2.096819 CGTACCATGCATAACCCAACAC 59.903 50.000 0.00 0.00 0.00 3.32
184 185 2.290387 ACGTACCATGCATAACCCAACA 60.290 45.455 0.00 0.00 0.00 3.33
185 186 2.361789 ACGTACCATGCATAACCCAAC 58.638 47.619 0.00 0.00 0.00 3.77
186 187 2.791347 ACGTACCATGCATAACCCAA 57.209 45.000 0.00 0.00 0.00 4.12
187 188 3.908643 TTACGTACCATGCATAACCCA 57.091 42.857 0.00 0.00 0.00 4.51
188 189 5.761165 AATTTACGTACCATGCATAACCC 57.239 39.130 0.00 0.00 0.00 4.11
189 190 8.090250 TCATAATTTACGTACCATGCATAACC 57.910 34.615 0.00 0.00 0.00 2.85
190 191 9.938670 TTTCATAATTTACGTACCATGCATAAC 57.061 29.630 0.00 0.00 0.00 1.89
212 213 9.877178 TTTACTTGCCTTTTTCTGTTAATTTCA 57.123 25.926 0.00 0.00 0.00 2.69
219 220 9.830975 ATTGTAATTTACTTGCCTTTTTCTGTT 57.169 25.926 7.99 0.00 0.00 3.16
220 221 9.260002 CATTGTAATTTACTTGCCTTTTTCTGT 57.740 29.630 7.99 0.00 0.00 3.41
221 222 8.223100 GCATTGTAATTTACTTGCCTTTTTCTG 58.777 33.333 17.22 0.00 34.59 3.02
222 223 8.150296 AGCATTGTAATTTACTTGCCTTTTTCT 58.850 29.630 21.18 7.57 38.44 2.52
223 224 8.310406 AGCATTGTAATTTACTTGCCTTTTTC 57.690 30.769 21.18 4.05 38.44 2.29
224 225 9.203421 GTAGCATTGTAATTTACTTGCCTTTTT 57.797 29.630 21.18 11.66 38.44 1.94
225 226 8.364142 TGTAGCATTGTAATTTACTTGCCTTTT 58.636 29.630 21.18 11.89 38.44 2.27
226 227 7.891561 TGTAGCATTGTAATTTACTTGCCTTT 58.108 30.769 21.18 12.12 38.44 3.11
227 228 7.461182 TGTAGCATTGTAATTTACTTGCCTT 57.539 32.000 21.18 12.57 38.44 4.35
228 229 7.339212 TCATGTAGCATTGTAATTTACTTGCCT 59.661 33.333 21.18 14.93 38.44 4.75
229 230 7.479980 TCATGTAGCATTGTAATTTACTTGCC 58.520 34.615 21.18 13.13 38.44 4.52
230 231 8.909708 TTCATGTAGCATTGTAATTTACTTGC 57.090 30.769 19.00 19.00 38.17 4.01
241 242 9.926158 TTTGATGTTAATTTCATGTAGCATTGT 57.074 25.926 0.00 0.00 0.00 2.71
303 304 9.297037 ACACTAAGCAATCACCTTAATTTACTT 57.703 29.630 0.00 0.00 0.00 2.24
304 305 8.863872 ACACTAAGCAATCACCTTAATTTACT 57.136 30.769 0.00 0.00 0.00 2.24
305 306 9.983804 GTACACTAAGCAATCACCTTAATTTAC 57.016 33.333 0.00 0.00 0.00 2.01
306 307 9.727859 TGTACACTAAGCAATCACCTTAATTTA 57.272 29.630 0.00 0.00 0.00 1.40
307 308 8.630054 TGTACACTAAGCAATCACCTTAATTT 57.370 30.769 0.00 0.00 0.00 1.82
308 309 8.677300 CATGTACACTAAGCAATCACCTTAATT 58.323 33.333 0.00 0.00 0.00 1.40
309 310 7.283127 CCATGTACACTAAGCAATCACCTTAAT 59.717 37.037 0.00 0.00 0.00 1.40
310 311 6.597672 CCATGTACACTAAGCAATCACCTTAA 59.402 38.462 0.00 0.00 0.00 1.85
311 312 6.070481 TCCATGTACACTAAGCAATCACCTTA 60.070 38.462 0.00 0.00 0.00 2.69
312 313 4.943705 CCATGTACACTAAGCAATCACCTT 59.056 41.667 0.00 0.00 0.00 3.50
313 314 4.225042 TCCATGTACACTAAGCAATCACCT 59.775 41.667 0.00 0.00 0.00 4.00
314 315 4.513442 TCCATGTACACTAAGCAATCACC 58.487 43.478 0.00 0.00 0.00 4.02
315 316 6.072728 TGTTTCCATGTACACTAAGCAATCAC 60.073 38.462 0.00 0.00 0.00 3.06
316 317 6.000840 TGTTTCCATGTACACTAAGCAATCA 58.999 36.000 0.00 0.00 0.00 2.57
317 318 6.494893 TGTTTCCATGTACACTAAGCAATC 57.505 37.500 0.00 0.00 0.00 2.67
318 319 6.567701 CGTTGTTTCCATGTACACTAAGCAAT 60.568 38.462 14.58 0.00 0.00 3.56
319 320 5.277586 CGTTGTTTCCATGTACACTAAGCAA 60.278 40.000 0.00 4.90 0.00 3.91
320 321 4.212425 CGTTGTTTCCATGTACACTAAGCA 59.788 41.667 0.00 0.00 0.00 3.91
321 322 4.378046 CCGTTGTTTCCATGTACACTAAGC 60.378 45.833 0.00 0.00 0.00 3.09
322 323 4.992319 TCCGTTGTTTCCATGTACACTAAG 59.008 41.667 0.00 0.00 0.00 2.18
323 324 4.751098 GTCCGTTGTTTCCATGTACACTAA 59.249 41.667 0.00 0.00 0.00 2.24
324 325 4.202233 TGTCCGTTGTTTCCATGTACACTA 60.202 41.667 0.00 0.00 0.00 2.74
325 326 3.135994 GTCCGTTGTTTCCATGTACACT 58.864 45.455 0.00 0.00 0.00 3.55
326 327 2.873472 TGTCCGTTGTTTCCATGTACAC 59.127 45.455 0.00 0.00 0.00 2.90
327 328 3.195471 TGTCCGTTGTTTCCATGTACA 57.805 42.857 0.00 0.00 0.00 2.90
328 329 4.555348 TTTGTCCGTTGTTTCCATGTAC 57.445 40.909 0.00 0.00 0.00 2.90
329 330 4.036971 CCTTTTGTCCGTTGTTTCCATGTA 59.963 41.667 0.00 0.00 0.00 2.29
330 331 3.181480 CCTTTTGTCCGTTGTTTCCATGT 60.181 43.478 0.00 0.00 0.00 3.21
331 332 3.380142 CCTTTTGTCCGTTGTTTCCATG 58.620 45.455 0.00 0.00 0.00 3.66
332 333 2.223947 GCCTTTTGTCCGTTGTTTCCAT 60.224 45.455 0.00 0.00 0.00 3.41
333 334 1.135333 GCCTTTTGTCCGTTGTTTCCA 59.865 47.619 0.00 0.00 0.00 3.53
334 335 1.135333 TGCCTTTTGTCCGTTGTTTCC 59.865 47.619 0.00 0.00 0.00 3.13
380 381 1.071814 CCCTCCGTCGGGTTTTTCA 59.928 57.895 12.29 0.00 39.51 2.69
392 394 1.045350 TCTCTCATCAAGCCCCTCCG 61.045 60.000 0.00 0.00 0.00 4.63
401 403 3.102972 CCACTTCCTCCTCTCTCATCAA 58.897 50.000 0.00 0.00 0.00 2.57
403 405 2.745968 ACCACTTCCTCCTCTCTCATC 58.254 52.381 0.00 0.00 0.00 2.92
411 413 2.982488 ACTTGATCAACCACTTCCTCCT 59.018 45.455 3.38 0.00 0.00 3.69
420 422 4.503910 CCGTCAGAATACTTGATCAACCA 58.496 43.478 3.38 0.00 0.00 3.67
439 441 2.067365 AAGGTTCCTTTTTCTGCCGT 57.933 45.000 0.00 0.00 0.00 5.68
442 444 5.628134 CATACGTAAGGTTCCTTTTTCTGC 58.372 41.667 9.46 0.00 46.39 4.26
443 445 5.411669 AGCATACGTAAGGTTCCTTTTTCTG 59.588 40.000 9.46 3.73 46.39 3.02
444 446 5.557866 AGCATACGTAAGGTTCCTTTTTCT 58.442 37.500 9.46 0.00 46.39 2.52
445 447 5.874895 AGCATACGTAAGGTTCCTTTTTC 57.125 39.130 9.46 1.34 46.39 2.29
446 448 6.644248 AAAGCATACGTAAGGTTCCTTTTT 57.356 33.333 14.75 0.00 46.39 1.94
471 473 9.475620 TGTCCTTATCTTCATCTCTTACTTACA 57.524 33.333 0.00 0.00 0.00 2.41
475 477 8.278639 TCTCTGTCCTTATCTTCATCTCTTACT 58.721 37.037 0.00 0.00 0.00 2.24
478 480 6.040842 GCTCTCTGTCCTTATCTTCATCTCTT 59.959 42.308 0.00 0.00 0.00 2.85
485 487 5.825679 TCTACTGCTCTCTGTCCTTATCTTC 59.174 44.000 0.00 0.00 0.00 2.87
538 548 9.938670 GGACGTGTCTGTATCTATATCAATATC 57.061 37.037 0.00 0.00 0.00 1.63
543 553 7.576861 TTTGGACGTGTCTGTATCTATATCA 57.423 36.000 0.00 0.00 0.00 2.15
555 565 5.217978 TGTACCTAATTTTGGACGTGTCT 57.782 39.130 0.00 0.00 0.00 3.41
556 566 6.815142 AGTATGTACCTAATTTTGGACGTGTC 59.185 38.462 0.00 0.00 0.00 3.67
557 567 6.704310 AGTATGTACCTAATTTTGGACGTGT 58.296 36.000 0.00 0.00 0.00 4.49
558 568 6.257193 GGAGTATGTACCTAATTTTGGACGTG 59.743 42.308 0.00 0.00 0.00 4.49
560 570 5.756833 GGGAGTATGTACCTAATTTTGGACG 59.243 44.000 3.80 0.00 0.00 4.79
562 572 6.906901 AGAGGGAGTATGTACCTAATTTTGGA 59.093 38.462 3.80 0.00 34.02 3.53
563 573 6.992715 CAGAGGGAGTATGTACCTAATTTTGG 59.007 42.308 0.00 0.00 34.02 3.28
564 574 7.565680 ACAGAGGGAGTATGTACCTAATTTTG 58.434 38.462 0.00 0.00 34.02 2.44
565 575 7.750947 ACAGAGGGAGTATGTACCTAATTTT 57.249 36.000 0.00 0.00 34.02 1.82
566 576 7.147532 GGAACAGAGGGAGTATGTACCTAATTT 60.148 40.741 0.00 0.00 34.02 1.82
567 577 6.326843 GGAACAGAGGGAGTATGTACCTAATT 59.673 42.308 0.00 0.00 34.02 1.40
568 578 5.839606 GGAACAGAGGGAGTATGTACCTAAT 59.160 44.000 0.00 0.00 34.02 1.73
569 579 5.206587 GGAACAGAGGGAGTATGTACCTAA 58.793 45.833 0.00 0.00 34.02 2.69
570 580 4.688045 CGGAACAGAGGGAGTATGTACCTA 60.688 50.000 0.00 0.00 34.02 3.08
571 581 3.644335 GGAACAGAGGGAGTATGTACCT 58.356 50.000 0.00 0.00 37.31 3.08
572 582 2.361438 CGGAACAGAGGGAGTATGTACC 59.639 54.545 0.00 0.00 27.65 3.34
573 583 3.285484 TCGGAACAGAGGGAGTATGTAC 58.715 50.000 0.00 0.00 27.65 2.90
574 584 3.657398 TCGGAACAGAGGGAGTATGTA 57.343 47.619 0.00 0.00 27.65 2.29
575 585 2.526888 TCGGAACAGAGGGAGTATGT 57.473 50.000 0.00 0.00 29.34 2.29
576 586 4.408182 AATTCGGAACAGAGGGAGTATG 57.592 45.455 0.00 0.00 0.00 2.39
577 587 5.209659 AGTAATTCGGAACAGAGGGAGTAT 58.790 41.667 0.00 0.00 0.00 2.12
578 588 4.607239 AGTAATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
579 589 3.442076 AGTAATTCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
580 590 4.184629 CAAGTAATTCGGAACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
581 591 3.581332 ACAAGTAATTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
582 592 3.933332 GACAAGTAATTCGGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
583 593 4.389077 GTGACAAGTAATTCGGAACAGAGG 59.611 45.833 0.00 0.00 0.00 3.69
584 594 4.090066 CGTGACAAGTAATTCGGAACAGAG 59.910 45.833 0.00 0.00 0.00 3.35
585 595 3.985279 CGTGACAAGTAATTCGGAACAGA 59.015 43.478 0.00 0.00 0.00 3.41
586 596 3.985279 TCGTGACAAGTAATTCGGAACAG 59.015 43.478 0.00 0.00 0.00 3.16
587 597 3.979948 TCGTGACAAGTAATTCGGAACA 58.020 40.909 0.00 0.00 0.00 3.18
588 598 3.985925 ACTCGTGACAAGTAATTCGGAAC 59.014 43.478 0.00 0.00 0.00 3.62
589 599 4.247267 ACTCGTGACAAGTAATTCGGAA 57.753 40.909 0.00 0.00 0.00 4.30
590 600 3.928727 ACTCGTGACAAGTAATTCGGA 57.071 42.857 0.00 0.00 0.00 4.55
591 601 4.503007 CCATACTCGTGACAAGTAATTCGG 59.497 45.833 0.00 0.00 33.19 4.30
592 602 5.337554 TCCATACTCGTGACAAGTAATTCG 58.662 41.667 0.00 0.00 33.19 3.34
593 603 6.757010 ACATCCATACTCGTGACAAGTAATTC 59.243 38.462 0.00 0.00 33.19 2.17
594 604 6.640518 ACATCCATACTCGTGACAAGTAATT 58.359 36.000 0.00 0.00 33.19 1.40
595 605 6.222038 ACATCCATACTCGTGACAAGTAAT 57.778 37.500 0.00 0.00 33.19 1.89
596 606 5.654603 ACATCCATACTCGTGACAAGTAA 57.345 39.130 0.00 0.00 33.19 2.24
597 607 6.771267 AGATACATCCATACTCGTGACAAGTA 59.229 38.462 0.00 0.00 33.94 2.24
598 608 5.594725 AGATACATCCATACTCGTGACAAGT 59.405 40.000 0.00 0.00 0.00 3.16
599 609 6.078202 AGATACATCCATACTCGTGACAAG 57.922 41.667 0.00 0.00 0.00 3.16
600 610 6.996282 TCTAGATACATCCATACTCGTGACAA 59.004 38.462 0.00 0.00 0.00 3.18
601 611 6.531021 TCTAGATACATCCATACTCGTGACA 58.469 40.000 0.00 0.00 0.00 3.58
602 612 7.119992 ACATCTAGATACATCCATACTCGTGAC 59.880 40.741 4.54 0.00 0.00 3.67
603 613 7.168905 ACATCTAGATACATCCATACTCGTGA 58.831 38.462 4.54 0.00 0.00 4.35
604 614 7.384439 ACATCTAGATACATCCATACTCGTG 57.616 40.000 4.54 0.00 0.00 4.35
605 615 9.688091 AATACATCTAGATACATCCATACTCGT 57.312 33.333 4.54 0.00 0.00 4.18
632 642 9.781834 CGCAAAAATGGATGTATTTAGAACTAA 57.218 29.630 0.00 0.00 30.47 2.24
633 643 9.168451 TCGCAAAAATGGATGTATTTAGAACTA 57.832 29.630 0.00 0.00 30.47 2.24
634 644 7.968405 GTCGCAAAAATGGATGTATTTAGAACT 59.032 33.333 0.00 0.00 30.47 3.01
635 645 7.044966 CGTCGCAAAAATGGATGTATTTAGAAC 60.045 37.037 0.00 0.00 30.47 3.01
636 646 6.964370 CGTCGCAAAAATGGATGTATTTAGAA 59.036 34.615 0.00 0.00 30.47 2.10
637 647 6.314152 TCGTCGCAAAAATGGATGTATTTAGA 59.686 34.615 0.00 0.00 30.47 2.10
638 648 6.482835 TCGTCGCAAAAATGGATGTATTTAG 58.517 36.000 0.00 0.00 30.47 1.85
639 649 6.424176 TCGTCGCAAAAATGGATGTATTTA 57.576 33.333 0.00 0.00 30.47 1.40
640 650 5.303747 TCGTCGCAAAAATGGATGTATTT 57.696 34.783 0.00 0.00 31.87 1.40
641 651 4.955925 TCGTCGCAAAAATGGATGTATT 57.044 36.364 0.00 0.00 0.00 1.89
642 652 4.955925 TTCGTCGCAAAAATGGATGTAT 57.044 36.364 0.00 0.00 0.00 2.29
643 653 4.955925 ATTCGTCGCAAAAATGGATGTA 57.044 36.364 0.00 0.00 0.00 2.29
644 654 3.848272 ATTCGTCGCAAAAATGGATGT 57.152 38.095 0.00 0.00 0.00 3.06
645 655 6.810888 AATTATTCGTCGCAAAAATGGATG 57.189 33.333 0.00 0.00 0.00 3.51
646 656 6.255453 CCAAATTATTCGTCGCAAAAATGGAT 59.745 34.615 0.00 0.00 0.00 3.41
647 657 5.574830 CCAAATTATTCGTCGCAAAAATGGA 59.425 36.000 0.00 0.00 0.00 3.41
648 658 5.574830 TCCAAATTATTCGTCGCAAAAATGG 59.425 36.000 0.00 0.00 0.00 3.16
649 659 6.624710 TCCAAATTATTCGTCGCAAAAATG 57.375 33.333 0.00 0.00 0.00 2.32
650 660 6.183359 CGTTCCAAATTATTCGTCGCAAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
651 661 5.115773 CGTTCCAAATTATTCGTCGCAAAAA 59.884 36.000 0.00 0.00 0.00 1.94
652 662 4.613448 CGTTCCAAATTATTCGTCGCAAAA 59.387 37.500 0.00 0.00 0.00 2.44
653 663 4.152526 CGTTCCAAATTATTCGTCGCAAA 58.847 39.130 0.00 0.00 0.00 3.68
654 664 3.425094 CCGTTCCAAATTATTCGTCGCAA 60.425 43.478 0.00 0.00 0.00 4.85
655 665 2.094575 CCGTTCCAAATTATTCGTCGCA 59.905 45.455 0.00 0.00 0.00 5.10
656 666 2.349275 TCCGTTCCAAATTATTCGTCGC 59.651 45.455 0.00 0.00 0.00 5.19
657 667 4.587211 TTCCGTTCCAAATTATTCGTCG 57.413 40.909 0.00 0.00 0.00 5.12
658 668 6.128363 ACTCTTTCCGTTCCAAATTATTCGTC 60.128 38.462 0.00 0.00 0.00 4.20
659 669 5.704053 ACTCTTTCCGTTCCAAATTATTCGT 59.296 36.000 0.00 0.00 0.00 3.85
660 670 6.178239 ACTCTTTCCGTTCCAAATTATTCG 57.822 37.500 0.00 0.00 0.00 3.34
665 675 9.765795 CTAGATATACTCTTTCCGTTCCAAATT 57.234 33.333 0.00 0.00 35.28 1.82
666 676 9.144298 TCTAGATATACTCTTTCCGTTCCAAAT 57.856 33.333 0.00 0.00 35.28 2.32
667 677 8.529424 TCTAGATATACTCTTTCCGTTCCAAA 57.471 34.615 0.00 0.00 35.28 3.28
668 678 8.707796 ATCTAGATATACTCTTTCCGTTCCAA 57.292 34.615 2.53 0.00 35.28 3.53
669 679 8.707796 AATCTAGATATACTCTTTCCGTTCCA 57.292 34.615 5.46 0.00 35.28 3.53
672 682 9.584008 TGGTAATCTAGATATACTCTTTCCGTT 57.416 33.333 5.46 0.00 35.28 4.44
673 683 9.012161 GTGGTAATCTAGATATACTCTTTCCGT 57.988 37.037 5.46 0.00 35.28 4.69
674 684 8.460428 GGTGGTAATCTAGATATACTCTTTCCG 58.540 40.741 5.46 0.00 35.28 4.30
675 685 9.310449 TGGTGGTAATCTAGATATACTCTTTCC 57.690 37.037 5.46 0.00 35.28 3.13
678 688 8.754080 GCATGGTGGTAATCTAGATATACTCTT 58.246 37.037 5.46 0.00 35.28 2.85
679 689 8.119246 AGCATGGTGGTAATCTAGATATACTCT 58.881 37.037 5.46 0.00 38.06 3.24
680 690 8.299990 AGCATGGTGGTAATCTAGATATACTC 57.700 38.462 5.46 8.25 0.00 2.59
681 691 8.671987 AAGCATGGTGGTAATCTAGATATACT 57.328 34.615 5.46 0.00 0.00 2.12
687 697 9.778741 CTTAATAAAGCATGGTGGTAATCTAGA 57.221 33.333 0.00 0.00 0.00 2.43
688 698 9.561069 ACTTAATAAAGCATGGTGGTAATCTAG 57.439 33.333 0.00 0.00 36.05 2.43
689 699 9.914834 AACTTAATAAAGCATGGTGGTAATCTA 57.085 29.630 0.00 0.00 36.05 1.98
690 700 8.823220 AACTTAATAAAGCATGGTGGTAATCT 57.177 30.769 0.00 0.00 36.05 2.40
691 701 8.682710 TGAACTTAATAAAGCATGGTGGTAATC 58.317 33.333 0.00 0.00 36.05 1.75
692 702 8.588290 TGAACTTAATAAAGCATGGTGGTAAT 57.412 30.769 0.00 0.00 36.05 1.89
693 703 7.668052 ACTGAACTTAATAAAGCATGGTGGTAA 59.332 33.333 0.00 0.00 36.05 2.85
694 704 7.120579 CACTGAACTTAATAAAGCATGGTGGTA 59.879 37.037 0.00 0.00 36.05 3.25
695 705 6.010219 ACTGAACTTAATAAAGCATGGTGGT 58.990 36.000 0.00 0.00 36.05 4.16
696 706 6.150976 TCACTGAACTTAATAAAGCATGGTGG 59.849 38.462 0.00 0.00 36.05 4.61
697 707 7.144722 TCACTGAACTTAATAAAGCATGGTG 57.855 36.000 0.00 0.00 36.05 4.17
725 738 7.229707 CGATTCTCTCTCTCTCAATAAAGGGTA 59.770 40.741 0.00 0.00 0.00 3.69
738 751 3.369451 GGTGTTTTGCGATTCTCTCTCTC 59.631 47.826 0.00 0.00 0.00 3.20
742 755 3.896648 TTGGTGTTTTGCGATTCTCTC 57.103 42.857 0.00 0.00 0.00 3.20
744 757 2.719046 CGTTTGGTGTTTTGCGATTCTC 59.281 45.455 0.00 0.00 0.00 2.87
746 759 2.215363 CACGTTTGGTGTTTTGCGATTC 59.785 45.455 0.00 0.00 41.89 2.52
759 772 1.263217 GGTGTACTCTTGCACGTTTGG 59.737 52.381 0.00 0.00 39.14 3.28
764 777 1.260561 GTGTTGGTGTACTCTTGCACG 59.739 52.381 0.00 0.00 39.14 5.34
770 783 1.340248 CCTCGTGTGTTGGTGTACTCT 59.660 52.381 0.00 0.00 0.00 3.24
787 800 1.574702 CCGCCTCCGTTTTGTTCCTC 61.575 60.000 0.00 0.00 0.00 3.71
863 877 4.965762 CGTGCATGCATCTGTACAAATAAG 59.034 41.667 25.64 0.00 32.00 1.73
864 878 4.730324 GCGTGCATGCATCTGTACAAATAA 60.730 41.667 25.64 0.00 32.00 1.40
887 901 4.436998 GAGGGAGTCGTGGTGGCG 62.437 72.222 0.00 0.00 0.00 5.69
888 902 4.083862 GGAGGGAGTCGTGGTGGC 62.084 72.222 0.00 0.00 0.00 5.01
889 903 1.553690 AATGGAGGGAGTCGTGGTGG 61.554 60.000 0.00 0.00 0.00 4.61
890 904 0.324943 AAATGGAGGGAGTCGTGGTG 59.675 55.000 0.00 0.00 0.00 4.17
958 977 2.586792 CTCGCTTTCCCAGGGGAG 59.413 66.667 5.33 5.50 46.06 4.30
1229 1248 2.125552 TGATCTGCAGGGCGTTCG 60.126 61.111 15.13 0.00 0.00 3.95
1365 1390 4.214327 GAGAAGGAGGCGAGGCGG 62.214 72.222 0.00 0.00 0.00 6.13
1369 1394 2.896443 GGTGGAGAAGGAGGCGAG 59.104 66.667 0.00 0.00 0.00 5.03
1575 1606 4.371417 TCGGGGTCGTAGGGCTGT 62.371 66.667 0.00 0.00 37.69 4.40
1677 1708 1.538634 CCGTCGTCCTTGGTGTTGTTA 60.539 52.381 0.00 0.00 0.00 2.41
1689 1723 4.760047 ATGTGGCTGCCGTCGTCC 62.760 66.667 14.98 0.00 0.00 4.79
1900 1934 4.900154 GAGAAGCTCCACCGTCAG 57.100 61.111 0.00 0.00 0.00 3.51
2035 2075 2.524640 GTCCCCGATCCTCCTCCC 60.525 72.222 0.00 0.00 0.00 4.30
2357 2419 2.205074 GAGCAGAGAGAGAGAGAGACG 58.795 57.143 0.00 0.00 0.00 4.18
2360 2422 4.063689 GAGATGAGCAGAGAGAGAGAGAG 58.936 52.174 0.00 0.00 0.00 3.20
2364 2426 2.804527 CGAGAGATGAGCAGAGAGAGAG 59.195 54.545 0.00 0.00 0.00 3.20
2365 2427 2.433970 TCGAGAGATGAGCAGAGAGAGA 59.566 50.000 0.00 0.00 33.31 3.10
2366 2428 2.837498 TCGAGAGATGAGCAGAGAGAG 58.163 52.381 0.00 0.00 33.31 3.20
2385 2447 6.253746 CAGTGATGAACGGAAATCTTTGATC 58.746 40.000 0.00 0.00 0.00 2.92
2432 2494 4.723309 ACCAATTCCCTGCAGAATCTATC 58.277 43.478 17.39 0.00 35.40 2.08
2434 2496 4.103153 CCTACCAATTCCCTGCAGAATCTA 59.897 45.833 17.39 0.00 35.40 1.98
2533 2597 3.742882 GCTTTTGGCAGCTTCTTTTTAGG 59.257 43.478 0.00 0.00 41.35 2.69
2611 2675 4.213270 ACTCATTCTTCACGCGATCAAAAA 59.787 37.500 15.93 0.00 0.00 1.94
2617 2681 1.394917 GCAACTCATTCTTCACGCGAT 59.605 47.619 15.93 0.00 0.00 4.58
2641 2705 3.185797 GCGTTTGACATTTCCGACTTACT 59.814 43.478 0.00 0.00 0.00 2.24
2666 2730 5.992217 GCCTGTACTTTTGTCTATCCATAGG 59.008 44.000 0.00 0.00 0.00 2.57
2687 3967 5.957842 TGAAACGTAATCTGAAAATGCCT 57.042 34.783 0.00 0.00 0.00 4.75
2749 4051 7.539034 AATTCTTGGTAAGGTAAGCAATTGT 57.461 32.000 7.40 0.00 36.37 2.71
2784 4086 7.309499 CCGTCAGCTTGAAATCTATCCTATACT 60.309 40.741 0.00 0.00 0.00 2.12
2787 4089 5.788450 CCGTCAGCTTGAAATCTATCCTAT 58.212 41.667 0.00 0.00 0.00 2.57
2788 4090 4.501571 GCCGTCAGCTTGAAATCTATCCTA 60.502 45.833 0.00 0.00 38.99 2.94
2789 4091 3.742640 GCCGTCAGCTTGAAATCTATCCT 60.743 47.826 0.00 0.00 38.99 3.24
2790 4092 2.545946 GCCGTCAGCTTGAAATCTATCC 59.454 50.000 0.00 0.00 38.99 2.59
2791 4093 3.868888 GCCGTCAGCTTGAAATCTATC 57.131 47.619 0.00 0.00 38.99 2.08
2822 4135 5.012239 AGTCACTGATATTTGTGTGCCAAT 58.988 37.500 8.29 0.00 35.82 3.16
2894 4226 7.065563 GGGCATTTTGTTATATGCATTGTTTCA 59.934 33.333 3.54 0.00 46.91 2.69
2895 4227 7.408910 GGGCATTTTGTTATATGCATTGTTTC 58.591 34.615 3.54 0.00 46.91 2.78
2898 4469 5.049167 CGGGCATTTTGTTATATGCATTGT 58.951 37.500 3.54 0.00 46.91 2.71
2923 4531 1.132640 GCGTCGTCAAGTTGGCATC 59.867 57.895 8.43 0.00 0.00 3.91
2931 4539 2.298300 GTCAAACATTGCGTCGTCAAG 58.702 47.619 7.85 4.02 0.00 3.02
2965 4573 6.094603 ACATCTCAAAGCCAGTAAAGCATTAG 59.905 38.462 0.00 0.00 0.00 1.73
2967 4575 4.768968 ACATCTCAAAGCCAGTAAAGCATT 59.231 37.500 0.00 0.00 0.00 3.56
3032 4643 1.404047 CCTTTGCCCGGCATACTTTTG 60.404 52.381 14.30 0.00 38.76 2.44
3033 4644 0.894835 CCTTTGCCCGGCATACTTTT 59.105 50.000 14.30 0.00 38.76 2.27
3052 4663 0.822811 TCAGAGATGAGTGCTGCTCC 59.177 55.000 0.00 0.00 43.48 4.70
3247 7318 1.410737 CGACGATGTTGTAGCGGTGG 61.411 60.000 0.00 0.00 43.76 4.61
3877 7954 3.041940 GTGCTTGTCCCGGACACG 61.042 66.667 20.33 18.89 42.60 4.49
3889 7966 2.032681 GAGGTCAAGGCCGTGCTT 59.967 61.111 14.54 5.64 0.00 3.91
3898 7975 1.134901 CGACGACGAGGAGGTCAAG 59.865 63.158 0.00 0.00 42.66 3.02
3899 7976 0.320683 TACGACGACGAGGAGGTCAA 60.321 55.000 15.32 0.00 42.66 3.18
3934 8011 4.351938 TTCTGCGTCGTCCACCCG 62.352 66.667 0.00 0.00 0.00 5.28
4084 8162 2.921754 CACGACCGACTAATTCCTTGTC 59.078 50.000 0.00 0.00 0.00 3.18
4094 8172 3.851620 GTGAACACACGACCGACTA 57.148 52.632 0.00 0.00 0.00 2.59
4176 8254 2.225019 CAGACACAGCTTGATCACAACC 59.775 50.000 0.00 0.00 32.27 3.77
4241 8491 9.856488 GATCAGATTGAAGTTGTACTACAAGTA 57.144 33.333 10.09 0.00 40.60 2.24
4243 8493 8.994429 AGATCAGATTGAAGTTGTACTACAAG 57.006 34.615 10.09 0.00 39.00 3.16
4244 8494 8.585018 TGAGATCAGATTGAAGTTGTACTACAA 58.415 33.333 10.09 0.00 35.42 2.41
4245 8495 8.122472 TGAGATCAGATTGAAGTTGTACTACA 57.878 34.615 10.09 0.00 0.00 2.74
4395 8675 6.350110 GCTTGGTATTGTGGTACAAACATCAT 60.350 38.462 0.00 0.00 44.16 2.45
4400 8680 4.277423 ACTGCTTGGTATTGTGGTACAAAC 59.723 41.667 0.00 0.00 44.16 2.93
4446 8726 6.919662 CACGAGGAATAGCAATTGCAAATAAT 59.080 34.615 30.89 12.66 45.16 1.28
4452 8732 2.710377 ACACGAGGAATAGCAATTGCA 58.290 42.857 30.89 17.58 45.16 4.08
4475 8755 2.365293 GGGTTGCACTTCCTTGTTTCAT 59.635 45.455 0.00 0.00 0.00 2.57
4478 8758 1.119684 GGGGTTGCACTTCCTTGTTT 58.880 50.000 0.00 0.00 0.00 2.83
4479 8759 1.106944 CGGGGTTGCACTTCCTTGTT 61.107 55.000 0.00 0.00 0.00 2.83
4480 8760 1.528309 CGGGGTTGCACTTCCTTGT 60.528 57.895 0.00 0.00 0.00 3.16
4481 8761 1.228124 TCGGGGTTGCACTTCCTTG 60.228 57.895 0.00 0.00 0.00 3.61
4484 8764 1.671379 GTCTCGGGGTTGCACTTCC 60.671 63.158 0.00 0.00 0.00 3.46
4485 8765 2.027625 CGTCTCGGGGTTGCACTTC 61.028 63.158 0.00 0.00 0.00 3.01
4501 8817 0.604511 GACAACGTCCCCATTTCCGT 60.605 55.000 0.00 0.00 34.56 4.69
4532 8848 0.249657 GCTAGCCCTCGTCATGGAAG 60.250 60.000 2.29 0.00 0.00 3.46
4533 8849 1.686325 GGCTAGCCCTCGTCATGGAA 61.686 60.000 24.19 0.00 0.00 3.53
4534 8850 2.134287 GGCTAGCCCTCGTCATGGA 61.134 63.158 24.19 0.00 0.00 3.41
4535 8851 1.971505 TTGGCTAGCCCTCGTCATGG 61.972 60.000 30.81 0.00 34.56 3.66
4536 8852 0.811616 GTTGGCTAGCCCTCGTCATG 60.812 60.000 30.81 0.00 34.56 3.07
4537 8853 1.264749 TGTTGGCTAGCCCTCGTCAT 61.265 55.000 30.81 0.00 34.56 3.06
4538 8854 1.476845 TTGTTGGCTAGCCCTCGTCA 61.477 55.000 30.81 18.02 34.56 4.35
4539 8855 0.107654 ATTGTTGGCTAGCCCTCGTC 60.108 55.000 30.81 15.80 34.56 4.20
4540 8856 0.392998 CATTGTTGGCTAGCCCTCGT 60.393 55.000 30.81 10.44 34.56 4.18
4572 8888 0.031314 CTGGCGATGCTATGACGTCT 59.969 55.000 17.92 4.95 32.79 4.18
4576 8892 2.289002 CCTTTTCTGGCGATGCTATGAC 59.711 50.000 0.00 0.00 0.00 3.06
4591 8907 3.186613 CGTCAACCTAGACTTGCCTTTTC 59.813 47.826 0.00 0.00 36.38 2.29
4598 8914 2.352814 CCTCACCGTCAACCTAGACTTG 60.353 54.545 0.00 0.00 36.38 3.16
4599 8915 1.893801 CCTCACCGTCAACCTAGACTT 59.106 52.381 0.00 0.00 36.38 3.01
4605 8921 1.768684 ATGCACCTCACCGTCAACCT 61.769 55.000 0.00 0.00 0.00 3.50
4613 8929 2.418368 TCCAACATATGCACCTCACC 57.582 50.000 1.58 0.00 0.00 4.02
4626 8942 0.310543 GCGCTGACAACAATCCAACA 59.689 50.000 0.00 0.00 0.00 3.33
4628 8944 1.317613 AAGCGCTGACAACAATCCAA 58.682 45.000 12.58 0.00 0.00 3.53
4635 8951 2.346803 TCCTTCATAAGCGCTGACAAC 58.653 47.619 12.58 0.00 0.00 3.32
4641 8957 2.789409 AAACCTCCTTCATAAGCGCT 57.211 45.000 2.64 2.64 0.00 5.92
4646 8962 5.369699 CCATCCCTCTAAACCTCCTTCATAA 59.630 44.000 0.00 0.00 0.00 1.90
4694 9010 3.551407 GGCAGAGACCGATCCCCC 61.551 72.222 0.00 0.00 0.00 5.40
4715 9031 1.488393 CTCTCCCCTCTTGATCCAACC 59.512 57.143 0.00 0.00 0.00 3.77
4718 9034 1.045350 CGCTCTCCCCTCTTGATCCA 61.045 60.000 0.00 0.00 0.00 3.41
4724 9040 1.075896 CCTACCGCTCTCCCCTCTT 60.076 63.158 0.00 0.00 0.00 2.85
4737 9053 3.118371 CGCCATATATCCCCTTTCCTACC 60.118 52.174 0.00 0.00 0.00 3.18
4747 9063 0.246635 AGTGTCGCGCCATATATCCC 59.753 55.000 0.00 0.00 0.00 3.85
4753 9069 0.812549 TAGTCAAGTGTCGCGCCATA 59.187 50.000 0.00 0.00 0.00 2.74
4844 9160 9.774413 ACTGGTGTTAAGCATACTATATAAACC 57.226 33.333 0.00 0.00 32.27 3.27
4848 9164 9.758651 CACAACTGGTGTTAAGCATACTATATA 57.241 33.333 0.00 0.00 42.75 0.86
4849 9165 8.662781 CACAACTGGTGTTAAGCATACTATAT 57.337 34.615 0.00 0.00 42.75 0.86
4851 9167 6.985188 CACAACTGGTGTTAAGCATACTAT 57.015 37.500 0.00 0.00 42.75 2.12
4865 9181 6.015180 TCGTATTAGGTTCTTACACAACTGGT 60.015 38.462 0.00 0.00 0.00 4.00
4866 9182 6.392354 TCGTATTAGGTTCTTACACAACTGG 58.608 40.000 0.00 0.00 0.00 4.00
4867 9183 8.475331 AATCGTATTAGGTTCTTACACAACTG 57.525 34.615 0.00 0.00 0.00 3.16
4868 9184 9.498176 AAAATCGTATTAGGTTCTTACACAACT 57.502 29.630 0.00 0.00 0.00 3.16
4871 9187 9.491675 TCAAAAATCGTATTAGGTTCTTACACA 57.508 29.630 0.00 0.00 0.00 3.72
4877 9193 9.159364 GGTAGTTCAAAAATCGTATTAGGTTCT 57.841 33.333 0.00 0.00 0.00 3.01
4878 9194 9.159364 AGGTAGTTCAAAAATCGTATTAGGTTC 57.841 33.333 0.00 0.00 0.00 3.62
4884 9200 8.952278 TGCAATAGGTAGTTCAAAAATCGTATT 58.048 29.630 0.00 0.00 0.00 1.89
4885 9201 8.500753 TGCAATAGGTAGTTCAAAAATCGTAT 57.499 30.769 0.00 0.00 0.00 3.06
4886 9202 7.908827 TGCAATAGGTAGTTCAAAAATCGTA 57.091 32.000 0.00 0.00 0.00 3.43
4887 9203 6.811253 TGCAATAGGTAGTTCAAAAATCGT 57.189 33.333 0.00 0.00 0.00 3.73
4888 9204 8.687824 AAATGCAATAGGTAGTTCAAAAATCG 57.312 30.769 0.00 0.00 0.00 3.34
4894 9210 9.625747 TCATCATAAATGCAATAGGTAGTTCAA 57.374 29.630 0.00 0.00 0.00 2.69
4895 9211 9.797642 ATCATCATAAATGCAATAGGTAGTTCA 57.202 29.630 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.