Multiple sequence alignment - TraesCS6A01G277300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G277300 chr6A 100.000 3316 0 0 1 3316 504474491 504471176 0.000000e+00 6124
1 TraesCS6A01G277300 chr6A 92.248 129 7 3 2833 2961 477910890 477910765 2.630000e-41 180
2 TraesCS6A01G277300 chr6A 94.737 114 3 3 2842 2954 13437170 13437281 1.220000e-39 174
3 TraesCS6A01G277300 chr6B 91.238 1244 77 18 1503 2727 548115840 548114610 0.000000e+00 1664
4 TraesCS6A01G277300 chr6B 85.859 1089 82 29 1 1067 548117168 548116130 0.000000e+00 1092
5 TraesCS6A01G277300 chr6B 85.965 171 20 3 2454 2620 547888605 547888435 2.630000e-41 180
6 TraesCS6A01G277300 chr6D 90.975 1241 45 23 1503 2727 363463680 363462491 0.000000e+00 1609
7 TraesCS6A01G277300 chr6D 86.089 1373 94 44 3 1309 363465078 363463737 0.000000e+00 1387
8 TraesCS6A01G277300 chr6D 92.734 289 17 2 3029 3316 363462150 363461865 6.620000e-112 414
9 TraesCS6A01G277300 chr7D 89.873 158 14 2 2159 2316 190005354 190005509 5.610000e-48 202
10 TraesCS6A01G277300 chr7B 90.667 150 14 0 2167 2316 334487119 334487268 2.020000e-47 200
11 TraesCS6A01G277300 chr7A 89.241 158 15 2 2159 2316 194177270 194177115 2.610000e-46 196
12 TraesCS6A01G277300 chr4A 95.575 113 4 1 2842 2954 1232430 1232541 2.630000e-41 180
13 TraesCS6A01G277300 chr4A 91.270 126 9 2 2833 2957 625546192 625546316 1.580000e-38 171
14 TraesCS6A01G277300 chr4A 92.373 118 9 0 2839 2956 416231510 416231393 5.690000e-38 169
15 TraesCS6A01G277300 chr3A 94.068 118 6 1 2841 2957 588840427 588840310 9.450000e-41 178
16 TraesCS6A01G277300 chr3A 92.500 120 6 3 2843 2961 510722148 510722031 5.690000e-38 169
17 TraesCS6A01G277300 chr1B 93.220 118 6 2 2845 2961 651523700 651523584 4.400000e-39 172
18 TraesCS6A01G277300 chr1B 93.162 117 8 0 2845 2961 687253940 687254056 4.400000e-39 172
19 TraesCS6A01G277300 chr5A 76.000 300 49 10 2722 3002 649857550 649857845 2.080000e-27 134
20 TraesCS6A01G277300 chr3B 75.180 278 52 9 2720 2983 47462351 47462077 7.520000e-22 115
21 TraesCS6A01G277300 chr5D 74.679 312 47 12 2725 3006 544234937 544234628 3.500000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G277300 chr6A 504471176 504474491 3315 True 6124.000000 6124 100.000000 1 3316 1 chr6A.!!$R2 3315
1 TraesCS6A01G277300 chr6B 548114610 548117168 2558 True 1378.000000 1664 88.548500 1 2727 2 chr6B.!!$R2 2726
2 TraesCS6A01G277300 chr6D 363461865 363465078 3213 True 1136.666667 1609 89.932667 3 3316 3 chr6D.!!$R1 3313


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 873 0.251832 TCAGGGGCGTCTCTTCTTCT 60.252 55.0 0.0 0.0 0.00 2.85 F
1279 1363 0.034337 AGTTCTGCTTCCGCCGTTAA 59.966 50.0 0.0 0.0 34.43 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2195 2311 0.659957 GGTAGCTGTACCGGTACTCG 59.340 60.0 37.37 29.31 39.6 4.18 R
2981 3289 0.036105 TGTGGCTAGGTCTACGTCGA 60.036 55.0 0.00 0.00 0.0 4.20 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.301346 CCTGTGGATAATTGGACTGCC 58.699 52.381 0.00 0.00 0.00 4.85
137 139 5.746307 TTTAGCGATTTAGCTCTCGTCTA 57.254 39.130 12.90 11.51 45.67 2.59
159 166 2.778299 ACTATTTTTCCGCAGAGCACA 58.222 42.857 0.00 0.00 0.00 4.57
170 177 1.467035 GCAGAGCACATAGTTTGCAGC 60.467 52.381 0.00 0.00 42.83 5.25
172 179 2.821307 GAGCACATAGTTTGCAGCTC 57.179 50.000 11.04 11.04 44.42 4.09
173 180 1.399791 GAGCACATAGTTTGCAGCTCC 59.600 52.381 13.90 0.00 44.69 4.70
175 182 1.815003 GCACATAGTTTGCAGCTCCTT 59.185 47.619 0.00 0.00 39.93 3.36
176 183 2.229784 GCACATAGTTTGCAGCTCCTTT 59.770 45.455 0.00 0.00 39.93 3.11
177 184 3.671702 GCACATAGTTTGCAGCTCCTTTC 60.672 47.826 0.00 0.00 39.93 2.62
178 185 3.084786 ACATAGTTTGCAGCTCCTTTCC 58.915 45.455 0.00 0.00 0.00 3.13
218 226 4.261994 CGGTCATTCAGTTTTTGGACCAAT 60.262 41.667 7.99 0.00 43.82 3.16
265 274 1.145738 AGATTTGGACCTTGTGCCACT 59.854 47.619 0.00 0.00 33.01 4.00
273 282 0.320683 CCTTGTGCCACTGATGTCGA 60.321 55.000 0.00 0.00 0.00 4.20
329 338 3.107642 AGCACGATATTCCTAAACCCG 57.892 47.619 0.00 0.00 0.00 5.28
342 351 1.545841 AAACCCGATCCTCAAAAGCC 58.454 50.000 0.00 0.00 0.00 4.35
435 445 1.207390 GCAAATCAACACGCAAGCAA 58.793 45.000 0.00 0.00 45.62 3.91
436 446 1.190763 GCAAATCAACACGCAAGCAAG 59.809 47.619 0.00 0.00 45.62 4.01
437 447 2.730069 CAAATCAACACGCAAGCAAGA 58.270 42.857 0.00 0.00 45.62 3.02
438 448 3.114809 CAAATCAACACGCAAGCAAGAA 58.885 40.909 0.00 0.00 45.62 2.52
499 509 0.950836 CATCGTGTCCCTTTTGTGCA 59.049 50.000 0.00 0.00 0.00 4.57
500 510 1.541147 CATCGTGTCCCTTTTGTGCAT 59.459 47.619 0.00 0.00 0.00 3.96
528 538 3.056962 TGACAAATGTAAACCATGCGCAT 60.057 39.130 19.28 19.28 32.82 4.73
542 552 2.497107 GCGCATGCACCTTTATCATT 57.503 45.000 19.57 0.00 42.15 2.57
543 553 3.624326 GCGCATGCACCTTTATCATTA 57.376 42.857 19.57 0.00 42.15 1.90
547 557 5.563475 GCGCATGCACCTTTATCATTAATCT 60.563 40.000 19.57 0.00 42.15 2.40
548 558 6.348458 GCGCATGCACCTTTATCATTAATCTA 60.348 38.462 19.57 0.00 42.15 1.98
550 560 7.535258 CGCATGCACCTTTATCATTAATCTAAC 59.465 37.037 19.57 0.00 0.00 2.34
551 561 7.535258 GCATGCACCTTTATCATTAATCTAACG 59.465 37.037 14.21 0.00 0.00 3.18
552 562 8.773645 CATGCACCTTTATCATTAATCTAACGA 58.226 33.333 0.00 0.00 0.00 3.85
553 563 8.902540 TGCACCTTTATCATTAATCTAACGAT 57.097 30.769 0.00 0.00 0.00 3.73
554 564 8.988934 TGCACCTTTATCATTAATCTAACGATC 58.011 33.333 0.00 0.00 0.00 3.69
555 565 9.209175 GCACCTTTATCATTAATCTAACGATCT 57.791 33.333 0.00 0.00 0.00 2.75
580 590 5.916883 CCTATATAAACCCAGACGTACGTTG 59.083 44.000 23.70 20.10 0.00 4.10
669 679 2.558378 GGCTCCGGGTCTAACAATTAC 58.442 52.381 0.00 0.00 0.00 1.89
703 713 0.743345 GCCGTCCCTTTAGATGCGTT 60.743 55.000 0.00 0.00 0.00 4.84
803 816 1.391826 CCTTCTTTCTTTCGAGCGCTC 59.608 52.381 27.64 27.64 0.00 5.03
846 863 2.014128 CGAACAATTATTCAGGGGCGT 58.986 47.619 0.00 0.00 0.00 5.68
855 872 0.608640 TTCAGGGGCGTCTCTTCTTC 59.391 55.000 0.00 0.00 0.00 2.87
856 873 0.251832 TCAGGGGCGTCTCTTCTTCT 60.252 55.000 0.00 0.00 0.00 2.85
857 874 0.610687 CAGGGGCGTCTCTTCTTCTT 59.389 55.000 0.00 0.00 0.00 2.52
858 875 0.899019 AGGGGCGTCTCTTCTTCTTC 59.101 55.000 0.00 0.00 0.00 2.87
859 876 0.899019 GGGGCGTCTCTTCTTCTTCT 59.101 55.000 0.00 0.00 0.00 2.85
860 877 1.276705 GGGGCGTCTCTTCTTCTTCTT 59.723 52.381 0.00 0.00 0.00 2.52
861 878 2.612604 GGGCGTCTCTTCTTCTTCTTC 58.387 52.381 0.00 0.00 0.00 2.87
862 879 2.232696 GGGCGTCTCTTCTTCTTCTTCT 59.767 50.000 0.00 0.00 0.00 2.85
863 880 3.306433 GGGCGTCTCTTCTTCTTCTTCTT 60.306 47.826 0.00 0.00 0.00 2.52
871 888 8.233868 GTCTCTTCTTCTTCTTCTTTAAATGGC 58.766 37.037 0.00 0.00 0.00 4.40
876 893 4.579869 TCTTCTTCTTTAAATGGCTCGCT 58.420 39.130 0.00 0.00 0.00 4.93
908 925 2.815647 GCCGCGAACTGAAGGAGG 60.816 66.667 8.23 0.00 0.00 4.30
927 962 3.406361 GCATGTATCCCGCGCGAG 61.406 66.667 34.63 20.97 0.00 5.03
990 1025 2.050350 CGTGCGAGTTAGGGAGGGA 61.050 63.158 0.00 0.00 0.00 4.20
995 1030 0.468400 CGAGTTAGGGAGGGAGGGAG 60.468 65.000 0.00 0.00 0.00 4.30
1058 1097 1.821216 CTTGGGAAGTGCAACGGTAT 58.179 50.000 0.00 0.00 45.86 2.73
1077 1141 2.591571 TGATGCGTCTTCTCTGATGG 57.408 50.000 7.58 0.00 0.00 3.51
1081 1145 0.723981 GCGTCTTCTCTGATGGTTGC 59.276 55.000 0.00 0.00 0.00 4.17
1129 1194 2.325082 GCGCTTGGTTCACGGATGT 61.325 57.895 0.00 0.00 0.00 3.06
1139 1204 3.680458 GGTTCACGGATGTCTTTCTTCTC 59.320 47.826 0.00 0.00 0.00 2.87
1143 1208 2.164624 ACGGATGTCTTTCTTCTCTCGG 59.835 50.000 0.00 0.00 0.00 4.63
1153 1218 2.017782 TCTTCTCTCGGACCATTCTCG 58.982 52.381 0.00 0.00 0.00 4.04
1164 1236 0.731417 CCATTCTCGAGCAGCTTTGG 59.269 55.000 7.81 0.00 0.00 3.28
1177 1260 1.968017 CTTTGGCCTTCTGCGCTGA 60.968 57.895 13.46 13.46 42.61 4.26
1224 1308 2.309162 ACCAGTGCTAGAGACCTCTGTA 59.691 50.000 9.65 0.00 40.71 2.74
1232 1316 5.592282 TGCTAGAGACCTCTGTATTTCTCAG 59.408 44.000 9.65 0.00 40.71 3.35
1241 1325 6.098982 ACCTCTGTATTTCTCAGGATAGGTTG 59.901 42.308 0.00 0.00 35.54 3.77
1242 1326 6.098982 CCTCTGTATTTCTCAGGATAGGTTGT 59.901 42.308 0.00 0.00 34.15 3.32
1243 1327 7.365117 CCTCTGTATTTCTCAGGATAGGTTGTT 60.365 40.741 0.00 0.00 34.15 2.83
1244 1328 7.556844 TCTGTATTTCTCAGGATAGGTTGTTC 58.443 38.462 0.00 0.00 34.15 3.18
1245 1329 6.650120 TGTATTTCTCAGGATAGGTTGTTCC 58.350 40.000 0.00 0.00 0.00 3.62
1246 1330 5.779241 ATTTCTCAGGATAGGTTGTTCCA 57.221 39.130 0.00 0.00 39.02 3.53
1266 1350 3.369147 CCAGTCGCTACAATTCAGTTCTG 59.631 47.826 0.00 0.00 0.00 3.02
1271 1355 3.181516 CGCTACAATTCAGTTCTGCTTCC 60.182 47.826 0.00 0.00 0.00 3.46
1274 1358 1.135575 CAATTCAGTTCTGCTTCCGCC 60.136 52.381 0.00 0.00 34.43 6.13
1275 1359 1.021390 ATTCAGTTCTGCTTCCGCCG 61.021 55.000 0.00 0.00 34.43 6.46
1276 1360 2.357517 CAGTTCTGCTTCCGCCGT 60.358 61.111 0.00 0.00 34.43 5.68
1279 1363 0.034337 AGTTCTGCTTCCGCCGTTAA 59.966 50.000 0.00 0.00 34.43 2.01
1280 1364 0.165295 GTTCTGCTTCCGCCGTTAAC 59.835 55.000 0.00 0.00 34.43 2.01
1292 1377 3.109619 CGCCGTTAACTTTTTCTTTGCA 58.890 40.909 3.71 0.00 0.00 4.08
1315 1425 6.708054 GCATAAGTTTCTGTACCATGATAGCT 59.292 38.462 0.00 0.00 0.00 3.32
1324 1434 3.641434 ACCATGATAGCTGAGCTTTGT 57.359 42.857 14.14 0.00 40.44 2.83
1331 1441 5.352284 TGATAGCTGAGCTTTGTTAGTAGC 58.648 41.667 14.14 0.00 40.44 3.58
1333 1443 4.213564 AGCTGAGCTTTGTTAGTAGCAT 57.786 40.909 0.00 0.00 39.85 3.79
1335 1445 4.633565 AGCTGAGCTTTGTTAGTAGCATTC 59.366 41.667 0.00 0.00 39.85 2.67
1336 1446 4.201861 GCTGAGCTTTGTTAGTAGCATTCC 60.202 45.833 0.00 0.00 39.85 3.01
1338 1448 5.560724 TGAGCTTTGTTAGTAGCATTCCTT 58.439 37.500 0.00 0.00 39.85 3.36
1340 1450 7.338710 TGAGCTTTGTTAGTAGCATTCCTTAT 58.661 34.615 0.00 0.00 39.85 1.73
1341 1451 7.829211 TGAGCTTTGTTAGTAGCATTCCTTATT 59.171 33.333 0.00 0.00 39.85 1.40
1342 1452 7.989826 AGCTTTGTTAGTAGCATTCCTTATTG 58.010 34.615 0.00 0.00 39.85 1.90
1343 1453 7.611855 AGCTTTGTTAGTAGCATTCCTTATTGT 59.388 33.333 0.00 0.00 39.85 2.71
1344 1454 8.244113 GCTTTGTTAGTAGCATTCCTTATTGTT 58.756 33.333 0.00 0.00 37.35 2.83
1346 1456 9.906660 TTTGTTAGTAGCATTCCTTATTGTTTG 57.093 29.630 0.00 0.00 0.00 2.93
1347 1457 8.856153 TGTTAGTAGCATTCCTTATTGTTTGA 57.144 30.769 0.00 0.00 0.00 2.69
1348 1458 8.726988 TGTTAGTAGCATTCCTTATTGTTTGAC 58.273 33.333 0.00 0.00 0.00 3.18
1349 1459 8.947115 GTTAGTAGCATTCCTTATTGTTTGACT 58.053 33.333 0.00 0.00 0.00 3.41
1350 1460 7.617041 AGTAGCATTCCTTATTGTTTGACTC 57.383 36.000 0.00 0.00 0.00 3.36
1351 1461 7.168219 AGTAGCATTCCTTATTGTTTGACTCA 58.832 34.615 0.00 0.00 0.00 3.41
1352 1462 7.831193 AGTAGCATTCCTTATTGTTTGACTCAT 59.169 33.333 0.00 0.00 0.00 2.90
1353 1463 7.472334 AGCATTCCTTATTGTTTGACTCATT 57.528 32.000 0.00 0.00 0.00 2.57
1354 1464 7.899973 AGCATTCCTTATTGTTTGACTCATTT 58.100 30.769 0.00 0.00 0.00 2.32
1355 1465 8.370182 AGCATTCCTTATTGTTTGACTCATTTT 58.630 29.630 0.00 0.00 0.00 1.82
1356 1466 8.992073 GCATTCCTTATTGTTTGACTCATTTTT 58.008 29.630 0.00 0.00 0.00 1.94
1378 1488 5.858159 TTTTCACGAATACGCAAAGTTTG 57.142 34.783 11.41 11.41 43.96 2.93
1379 1489 4.539509 TTCACGAATACGCAAAGTTTGT 57.460 36.364 16.70 0.88 43.96 2.83
1380 1490 5.654317 TTCACGAATACGCAAAGTTTGTA 57.346 34.783 16.70 3.17 43.96 2.41
1381 1491 5.849357 TCACGAATACGCAAAGTTTGTAT 57.151 34.783 16.70 8.01 43.96 2.29
1382 1492 5.613812 TCACGAATACGCAAAGTTTGTATG 58.386 37.500 16.70 9.67 43.96 2.39
1383 1493 5.177881 TCACGAATACGCAAAGTTTGTATGT 59.822 36.000 16.70 14.32 43.96 2.29
1384 1494 5.503376 CACGAATACGCAAAGTTTGTATGTC 59.497 40.000 16.70 7.64 43.96 3.06
1385 1495 5.407387 ACGAATACGCAAAGTTTGTATGTCT 59.593 36.000 16.70 4.19 43.96 3.41
1386 1496 6.073440 ACGAATACGCAAAGTTTGTATGTCTT 60.073 34.615 16.70 11.27 43.96 3.01
1387 1497 6.795114 CGAATACGCAAAGTTTGTATGTCTTT 59.205 34.615 16.70 10.11 32.60 2.52
1388 1498 7.322699 CGAATACGCAAAGTTTGTATGTCTTTT 59.677 33.333 16.70 8.20 30.41 2.27
1389 1499 8.502161 AATACGCAAAGTTTGTATGTCTTTTC 57.498 30.769 16.70 0.00 30.41 2.29
1390 1500 5.885881 ACGCAAAGTTTGTATGTCTTTTCA 58.114 33.333 16.70 0.00 30.41 2.69
1391 1501 6.503524 ACGCAAAGTTTGTATGTCTTTTCAT 58.496 32.000 16.70 0.00 30.41 2.57
1392 1502 6.978080 ACGCAAAGTTTGTATGTCTTTTCATT 59.022 30.769 16.70 0.00 30.41 2.57
1393 1503 7.043458 ACGCAAAGTTTGTATGTCTTTTCATTG 60.043 33.333 16.70 0.00 30.41 2.82
1394 1504 7.167302 CGCAAAGTTTGTATGTCTTTTCATTGA 59.833 33.333 16.70 0.00 30.41 2.57
1395 1505 8.981647 GCAAAGTTTGTATGTCTTTTCATTGAT 58.018 29.630 16.70 0.00 30.41 2.57
1425 1535 9.579932 AGAAGAAGATAAAATGAGAACAAAGGT 57.420 29.630 0.00 0.00 0.00 3.50
1428 1538 9.454859 AGAAGATAAAATGAGAACAAAGGTAGG 57.545 33.333 0.00 0.00 0.00 3.18
1429 1539 8.581253 AAGATAAAATGAGAACAAAGGTAGGG 57.419 34.615 0.00 0.00 0.00 3.53
1430 1540 7.699878 AGATAAAATGAGAACAAAGGTAGGGT 58.300 34.615 0.00 0.00 0.00 4.34
1431 1541 8.832735 AGATAAAATGAGAACAAAGGTAGGGTA 58.167 33.333 0.00 0.00 0.00 3.69
1432 1542 8.803397 ATAAAATGAGAACAAAGGTAGGGTAC 57.197 34.615 0.00 0.00 0.00 3.34
1433 1543 5.836024 AATGAGAACAAAGGTAGGGTACA 57.164 39.130 0.00 0.00 0.00 2.90
1434 1544 6.388619 AATGAGAACAAAGGTAGGGTACAT 57.611 37.500 0.00 0.00 0.00 2.29
1435 1545 5.416271 TGAGAACAAAGGTAGGGTACATC 57.584 43.478 0.00 0.00 0.00 3.06
1436 1546 4.841813 TGAGAACAAAGGTAGGGTACATCA 59.158 41.667 0.00 0.00 0.00 3.07
1437 1547 5.161943 AGAACAAAGGTAGGGTACATCAC 57.838 43.478 0.00 0.00 0.00 3.06
1438 1548 4.595781 AGAACAAAGGTAGGGTACATCACA 59.404 41.667 0.00 0.00 0.00 3.58
1439 1549 5.250774 AGAACAAAGGTAGGGTACATCACAT 59.749 40.000 0.00 0.00 0.00 3.21
1440 1550 4.843728 ACAAAGGTAGGGTACATCACATG 58.156 43.478 0.00 0.00 0.00 3.21
1441 1551 4.199310 CAAAGGTAGGGTACATCACATGG 58.801 47.826 0.00 0.00 33.60 3.66
1442 1552 1.768870 AGGTAGGGTACATCACATGGC 59.231 52.381 0.00 0.00 33.60 4.40
1443 1553 1.488812 GGTAGGGTACATCACATGGCA 59.511 52.381 0.00 0.00 33.60 4.92
1444 1554 2.561569 GTAGGGTACATCACATGGCAC 58.438 52.381 0.00 0.00 33.60 5.01
1468 1578 4.695217 CCACAAACTGGCGTAAACATAT 57.305 40.909 0.00 0.00 31.36 1.78
1469 1579 5.054390 CCACAAACTGGCGTAAACATATT 57.946 39.130 0.00 0.00 31.36 1.28
1470 1580 4.856487 CCACAAACTGGCGTAAACATATTG 59.144 41.667 0.00 0.00 31.36 1.90
1471 1581 5.457140 CACAAACTGGCGTAAACATATTGT 58.543 37.500 0.00 0.00 31.13 2.71
1472 1582 5.567534 CACAAACTGGCGTAAACATATTGTC 59.432 40.000 0.00 0.00 29.61 3.18
1473 1583 5.472137 ACAAACTGGCGTAAACATATTGTCT 59.528 36.000 0.00 0.00 0.00 3.41
1474 1584 5.545658 AACTGGCGTAAACATATTGTCTG 57.454 39.130 0.00 0.00 0.00 3.51
1475 1585 3.938963 ACTGGCGTAAACATATTGTCTGG 59.061 43.478 0.00 0.00 0.00 3.86
1476 1586 4.188462 CTGGCGTAAACATATTGTCTGGA 58.812 43.478 0.00 0.00 0.00 3.86
1477 1587 4.188462 TGGCGTAAACATATTGTCTGGAG 58.812 43.478 0.00 0.00 0.00 3.86
1478 1588 3.002348 GGCGTAAACATATTGTCTGGAGC 59.998 47.826 0.00 0.00 0.00 4.70
1479 1589 3.621268 GCGTAAACATATTGTCTGGAGCA 59.379 43.478 0.00 0.00 0.00 4.26
1480 1590 4.260375 GCGTAAACATATTGTCTGGAGCAG 60.260 45.833 0.00 0.00 0.00 4.24
1481 1591 5.109210 CGTAAACATATTGTCTGGAGCAGA 58.891 41.667 0.00 0.00 38.25 4.26
1482 1592 5.580691 CGTAAACATATTGTCTGGAGCAGAA 59.419 40.000 0.00 0.00 42.46 3.02
1483 1593 6.092122 CGTAAACATATTGTCTGGAGCAGAAA 59.908 38.462 0.00 0.00 42.46 2.52
1484 1594 6.506500 AAACATATTGTCTGGAGCAGAAAG 57.493 37.500 0.00 0.00 42.46 2.62
1485 1595 5.426689 ACATATTGTCTGGAGCAGAAAGA 57.573 39.130 0.00 0.00 42.46 2.52
1486 1596 5.999044 ACATATTGTCTGGAGCAGAAAGAT 58.001 37.500 0.00 0.00 42.46 2.40
1487 1597 6.421485 ACATATTGTCTGGAGCAGAAAGATT 58.579 36.000 0.00 0.00 42.46 2.40
1488 1598 6.888632 ACATATTGTCTGGAGCAGAAAGATTT 59.111 34.615 0.00 0.00 42.46 2.17
1489 1599 5.640189 ATTGTCTGGAGCAGAAAGATTTG 57.360 39.130 0.00 0.00 42.46 2.32
1490 1600 3.415212 TGTCTGGAGCAGAAAGATTTGG 58.585 45.455 0.00 0.00 42.46 3.28
1491 1601 2.751806 GTCTGGAGCAGAAAGATTTGGG 59.248 50.000 0.00 0.00 42.46 4.12
1492 1602 2.644299 TCTGGAGCAGAAAGATTTGGGA 59.356 45.455 0.00 0.00 37.57 4.37
1493 1603 3.267812 TCTGGAGCAGAAAGATTTGGGAT 59.732 43.478 0.00 0.00 37.57 3.85
1494 1604 3.359033 TGGAGCAGAAAGATTTGGGATG 58.641 45.455 0.00 0.00 0.00 3.51
1495 1605 2.692041 GGAGCAGAAAGATTTGGGATGG 59.308 50.000 0.00 0.00 0.00 3.51
1496 1606 2.100418 GAGCAGAAAGATTTGGGATGGC 59.900 50.000 0.00 0.00 0.00 4.40
1497 1607 1.137675 GCAGAAAGATTTGGGATGGCC 59.862 52.381 0.00 0.00 0.00 5.36
1498 1608 1.406539 CAGAAAGATTTGGGATGGCCG 59.593 52.381 0.00 0.00 33.83 6.13
1499 1609 0.746659 GAAAGATTTGGGATGGCCGG 59.253 55.000 0.00 0.00 33.83 6.13
1500 1610 1.329913 AAAGATTTGGGATGGCCGGC 61.330 55.000 21.18 21.18 33.83 6.13
1501 1611 3.226537 GATTTGGGATGGCCGGCC 61.227 66.667 39.40 39.40 33.83 6.13
1534 1644 9.981114 TTTAACTCATGTCACGTGATCATATAT 57.019 29.630 23.12 14.17 0.00 0.86
1535 1645 9.626045 TTAACTCATGTCACGTGATCATATATC 57.374 33.333 23.12 6.56 0.00 1.63
1580 1690 1.135141 TGTCACACAAACAAAGCAGCC 60.135 47.619 0.00 0.00 0.00 4.85
1600 1710 2.543012 CCAGCTGATATTTGTGAGCTCG 59.457 50.000 17.39 0.00 39.82 5.03
1622 1732 2.280389 ACATATGCAGGGCGCGAG 60.280 61.111 12.10 0.00 46.97 5.03
1743 1853 4.980805 GCGGCACCAACTCCGTGA 62.981 66.667 0.00 0.00 46.79 4.35
1802 1918 2.034687 CAACACCCAGAGCCCCAG 59.965 66.667 0.00 0.00 0.00 4.45
1803 1919 3.971702 AACACCCAGAGCCCCAGC 61.972 66.667 0.00 0.00 40.32 4.85
1809 1925 4.437587 CAGAGCCCCAGCCCCAAG 62.438 72.222 0.00 0.00 41.25 3.61
1824 1940 4.299796 AAGCACCGCCACCCCAAT 62.300 61.111 0.00 0.00 0.00 3.16
1825 1941 4.740822 AGCACCGCCACCCCAATC 62.741 66.667 0.00 0.00 0.00 2.67
2036 2152 0.752743 AGGAGCAACAGCAGCAACAA 60.753 50.000 0.00 0.00 0.00 2.83
2141 2257 4.848000 TACCTGAGGTACACGCCA 57.152 55.556 7.39 0.00 37.09 5.69
2195 2311 1.516603 GCACGAGTACTTCTCCGGC 60.517 63.158 0.00 0.00 39.84 6.13
2319 2435 2.583593 GCGCCATCGTCTGACTCC 60.584 66.667 6.21 0.00 38.14 3.85
2383 2507 2.103538 TTCTCCATCGCGCCGTAC 59.896 61.111 0.00 0.00 0.00 3.67
2445 2569 0.969409 CCGGTTCCCTTCTCGTAGGT 60.969 60.000 0.00 0.00 33.17 3.08
2516 2652 1.795962 CGCGTTGTTTGGATTCGGC 60.796 57.895 0.00 0.00 0.00 5.54
2576 2714 5.050091 CGTTCTCTTGCAAAGCTAAGAAGAA 60.050 40.000 0.00 0.00 45.70 2.52
2577 2715 6.369799 GTTCTCTTGCAAAGCTAAGAAGAAG 58.630 40.000 0.00 0.00 45.70 2.85
2622 2760 6.694411 CACCAAAGACAGATTAAGCATAATGC 59.306 38.462 0.00 0.00 45.46 3.56
2656 2794 1.002468 GTGTATGCGATGGGAATGCAC 60.002 52.381 0.00 0.00 42.11 4.57
2687 2825 0.456995 CGTCTCCTTTCGCTGTCCTC 60.457 60.000 0.00 0.00 0.00 3.71
2697 2835 0.820074 CGCTGTCCTCCGGTCTAGAT 60.820 60.000 0.00 0.00 0.00 1.98
2724 2862 6.214205 ACGTGATCAAATCATTGCAAAAAC 57.786 33.333 1.71 0.00 42.04 2.43
2727 2865 6.074195 CGTGATCAAATCATTGCAAAAACAGT 60.074 34.615 1.71 0.00 42.04 3.55
2729 2867 8.124199 GTGATCAAATCATTGCAAAAACAGTTT 58.876 29.630 1.71 0.00 42.04 2.66
2730 2868 8.675504 TGATCAAATCATTGCAAAAACAGTTTT 58.324 25.926 1.71 5.37 34.92 2.43
2743 2881 8.702163 CAAAAACAGTTTTGGTAAGTCTCAAT 57.298 30.769 12.13 0.00 46.60 2.57
2745 2883 8.702163 AAAACAGTTTTGGTAAGTCTCAATTG 57.298 30.769 10.62 0.00 0.00 2.32
2746 2884 7.639113 AACAGTTTTGGTAAGTCTCAATTGA 57.361 32.000 8.12 8.12 0.00 2.57
2747 2885 7.027778 ACAGTTTTGGTAAGTCTCAATTGAC 57.972 36.000 3.38 0.00 37.23 3.18
2749 2887 7.134815 CAGTTTTGGTAAGTCTCAATTGACTG 58.865 38.462 3.38 2.57 45.49 3.51
2751 2889 7.227512 AGTTTTGGTAAGTCTCAATTGACTGAG 59.772 37.037 3.38 0.00 45.49 3.35
2752 2890 5.152623 TGGTAAGTCTCAATTGACTGAGG 57.847 43.478 3.38 0.00 45.49 3.86
2753 2891 3.935828 GGTAAGTCTCAATTGACTGAGGC 59.064 47.826 3.38 0.00 46.44 4.70
2757 2895 3.668447 GTCTCAATTGACTGAGGCTTCA 58.332 45.455 3.38 0.00 43.40 3.02
2759 2897 4.699257 GTCTCAATTGACTGAGGCTTCATT 59.301 41.667 3.38 0.00 43.40 2.57
2760 2898 5.877012 GTCTCAATTGACTGAGGCTTCATTA 59.123 40.000 3.38 0.00 43.40 1.90
2762 2900 6.541278 TCTCAATTGACTGAGGCTTCATTATG 59.459 38.462 3.38 0.00 42.68 1.90
2763 2901 6.182627 TCAATTGACTGAGGCTTCATTATGT 58.817 36.000 3.38 0.00 31.68 2.29
2764 2902 6.317140 TCAATTGACTGAGGCTTCATTATGTC 59.683 38.462 3.38 4.01 31.68 3.06
2765 2903 5.426689 TTGACTGAGGCTTCATTATGTCT 57.573 39.130 14.34 0.00 30.34 3.41
2766 2904 5.016051 TGACTGAGGCTTCATTATGTCTC 57.984 43.478 14.34 0.00 30.34 3.36
2767 2905 4.467438 TGACTGAGGCTTCATTATGTCTCA 59.533 41.667 14.34 0.00 30.34 3.27
2768 2906 5.046376 TGACTGAGGCTTCATTATGTCTCAA 60.046 40.000 14.34 0.00 31.95 3.02
2769 2907 5.181748 ACTGAGGCTTCATTATGTCTCAAC 58.818 41.667 0.00 0.00 31.95 3.18
2770 2908 4.517285 TGAGGCTTCATTATGTCTCAACC 58.483 43.478 0.00 0.00 0.00 3.77
2771 2909 3.535561 AGGCTTCATTATGTCTCAACCG 58.464 45.455 0.00 0.00 0.00 4.44
2772 2910 3.197766 AGGCTTCATTATGTCTCAACCGA 59.802 43.478 0.00 0.00 0.00 4.69
2773 2911 4.130118 GGCTTCATTATGTCTCAACCGAT 58.870 43.478 0.00 0.00 0.00 4.18
2774 2912 4.024556 GGCTTCATTATGTCTCAACCGATG 60.025 45.833 0.00 0.00 0.00 3.84
2775 2913 4.553547 GCTTCATTATGTCTCAACCGATGC 60.554 45.833 0.00 0.00 0.00 3.91
2776 2914 4.406648 TCATTATGTCTCAACCGATGCT 57.593 40.909 0.00 0.00 0.00 3.79
2782 2920 4.471904 TGTCTCAACCGATGCTATCTTT 57.528 40.909 0.00 0.00 0.00 2.52
2783 2921 4.832248 TGTCTCAACCGATGCTATCTTTT 58.168 39.130 0.00 0.00 0.00 2.27
2860 2998 9.228949 TCTTCTTACATACTACTCTCTTCGTTT 57.771 33.333 0.00 0.00 0.00 3.60
2870 3008 8.745464 ACTACTCTCTTCGTTTCAAATTACTC 57.255 34.615 0.00 0.00 0.00 2.59
2871 3009 6.692232 ACTCTCTTCGTTTCAAATTACTCG 57.308 37.500 0.00 0.00 0.00 4.18
2872 3010 6.214399 ACTCTCTTCGTTTCAAATTACTCGT 58.786 36.000 0.00 0.00 0.00 4.18
2874 3012 6.210796 TCTCTTCGTTTCAAATTACTCGTCA 58.789 36.000 0.00 0.00 0.00 4.35
2875 3013 6.143438 TCTCTTCGTTTCAAATTACTCGTCAC 59.857 38.462 0.00 0.00 0.00 3.67
2876 3014 5.749588 TCTTCGTTTCAAATTACTCGTCACA 59.250 36.000 0.00 0.00 0.00 3.58
2877 3015 5.570262 TCGTTTCAAATTACTCGTCACAG 57.430 39.130 0.00 0.00 0.00 3.66
2878 3016 5.283294 TCGTTTCAAATTACTCGTCACAGA 58.717 37.500 0.00 0.00 0.00 3.41
2879 3017 5.749588 TCGTTTCAAATTACTCGTCACAGAA 59.250 36.000 0.00 0.00 0.00 3.02
2880 3018 6.256104 TCGTTTCAAATTACTCGTCACAGAAA 59.744 34.615 0.00 0.00 0.00 2.52
2881 3019 7.042321 TCGTTTCAAATTACTCGTCACAGAAAT 60.042 33.333 0.00 0.00 0.00 2.17
2882 3020 7.058354 CGTTTCAAATTACTCGTCACAGAAATG 59.942 37.037 0.00 0.00 0.00 2.32
2883 3021 6.480524 TCAAATTACTCGTCACAGAAATGG 57.519 37.500 0.00 0.00 0.00 3.16
2884 3022 6.227522 TCAAATTACTCGTCACAGAAATGGA 58.772 36.000 0.00 0.00 0.00 3.41
2885 3023 6.878923 TCAAATTACTCGTCACAGAAATGGAT 59.121 34.615 0.00 0.00 0.00 3.41
2886 3024 6.668541 AATTACTCGTCACAGAAATGGATG 57.331 37.500 0.00 0.00 0.00 3.51
2887 3025 3.685139 ACTCGTCACAGAAATGGATGT 57.315 42.857 0.00 0.00 0.00 3.06
2889 3027 5.344743 ACTCGTCACAGAAATGGATGTAT 57.655 39.130 0.00 0.00 0.00 2.29
2890 3028 5.352284 ACTCGTCACAGAAATGGATGTATC 58.648 41.667 0.00 0.00 0.00 2.24
2892 3030 6.321435 ACTCGTCACAGAAATGGATGTATCTA 59.679 38.462 0.00 0.00 0.00 1.98
2898 3036 9.421399 TCACAGAAATGGATGTATCTAGAACTA 57.579 33.333 0.00 0.00 0.00 2.24
2926 3234 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
2931 3239 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
2932 3240 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2935 3243 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
2936 3244 3.965379 TCCATACCTGCGACAAGTAAA 57.035 42.857 0.00 0.00 0.00 2.01
2941 3249 5.123186 CCATACCTGCGACAAGTAAATTGAA 59.877 40.000 0.00 0.00 41.83 2.69
2945 3253 3.879427 TGCGACAAGTAAATTGAAACGG 58.121 40.909 0.00 0.00 41.83 4.44
2949 3257 4.378046 CGACAAGTAAATTGAAACGGAGGG 60.378 45.833 0.00 0.00 41.83 4.30
2954 3262 6.309389 AGTAAATTGAAACGGAGGGAGTAT 57.691 37.500 0.00 0.00 0.00 2.12
2955 3263 7.427989 AGTAAATTGAAACGGAGGGAGTATA 57.572 36.000 0.00 0.00 0.00 1.47
2956 3264 8.030913 AGTAAATTGAAACGGAGGGAGTATAT 57.969 34.615 0.00 0.00 0.00 0.86
2957 3265 8.148999 AGTAAATTGAAACGGAGGGAGTATATC 58.851 37.037 0.00 0.00 0.00 1.63
2958 3266 6.494666 AATTGAAACGGAGGGAGTATATCA 57.505 37.500 0.00 0.00 0.00 2.15
2959 3267 4.931661 TGAAACGGAGGGAGTATATCAC 57.068 45.455 0.00 0.00 0.00 3.06
2961 3269 4.960469 TGAAACGGAGGGAGTATATCACTT 59.040 41.667 0.00 0.00 43.76 3.16
2962 3270 4.939052 AACGGAGGGAGTATATCACTTG 57.061 45.455 0.00 0.00 43.76 3.16
2963 3271 4.180377 ACGGAGGGAGTATATCACTTGA 57.820 45.455 0.00 0.00 43.76 3.02
2964 3272 3.890147 ACGGAGGGAGTATATCACTTGAC 59.110 47.826 0.00 0.00 43.76 3.18
2965 3273 4.145807 CGGAGGGAGTATATCACTTGACT 58.854 47.826 0.00 0.00 43.76 3.41
2966 3274 4.022762 CGGAGGGAGTATATCACTTGACTG 60.023 50.000 0.00 0.00 43.76 3.51
2967 3275 5.141182 GGAGGGAGTATATCACTTGACTGA 58.859 45.833 0.00 0.00 43.76 3.41
2968 3276 5.242838 GGAGGGAGTATATCACTTGACTGAG 59.757 48.000 0.00 0.00 43.76 3.35
2969 3277 6.019656 AGGGAGTATATCACTTGACTGAGA 57.980 41.667 0.00 0.00 39.23 3.27
2970 3278 5.830991 AGGGAGTATATCACTTGACTGAGAC 59.169 44.000 0.00 0.00 39.23 3.36
2971 3279 5.830991 GGGAGTATATCACTTGACTGAGACT 59.169 44.000 0.00 0.00 37.72 3.24
2972 3280 6.322712 GGGAGTATATCACTTGACTGAGACTT 59.677 42.308 0.00 0.00 37.72 3.01
2973 3281 7.199766 GGAGTATATCACTTGACTGAGACTTG 58.800 42.308 0.00 0.00 37.72 3.16
2974 3282 7.106439 AGTATATCACTTGACTGAGACTTGG 57.894 40.000 0.00 0.00 31.59 3.61
2975 3283 6.665680 AGTATATCACTTGACTGAGACTTGGT 59.334 38.462 0.00 0.00 31.59 3.67
2976 3284 3.735237 TCACTTGACTGAGACTTGGTC 57.265 47.619 0.00 2.91 0.00 4.02
2977 3285 3.300388 TCACTTGACTGAGACTTGGTCT 58.700 45.455 0.00 0.00 46.42 3.85
2986 3294 0.875728 AGACTTGGTCTCAGTCGACG 59.124 55.000 10.46 5.48 38.71 5.12
2987 3295 0.592148 GACTTGGTCTCAGTCGACGT 59.408 55.000 10.46 0.00 34.75 4.34
2988 3296 1.802960 GACTTGGTCTCAGTCGACGTA 59.197 52.381 10.46 0.98 34.75 3.57
2989 3297 1.805345 ACTTGGTCTCAGTCGACGTAG 59.195 52.381 10.46 11.62 34.75 3.51
2990 3298 2.074576 CTTGGTCTCAGTCGACGTAGA 58.925 52.381 16.05 16.05 34.75 2.59
2991 3299 1.436600 TGGTCTCAGTCGACGTAGAC 58.563 55.000 29.92 29.92 41.23 2.59
2993 3301 1.724429 GTCTCAGTCGACGTAGACCT 58.276 55.000 28.65 9.54 41.83 3.85
2994 3302 2.886081 GTCTCAGTCGACGTAGACCTA 58.114 52.381 28.65 11.84 41.83 3.08
2995 3303 2.859538 GTCTCAGTCGACGTAGACCTAG 59.140 54.545 28.65 19.48 41.83 3.02
2996 3304 1.593933 CTCAGTCGACGTAGACCTAGC 59.406 57.143 22.92 0.33 41.83 3.42
2997 3305 0.656785 CAGTCGACGTAGACCTAGCC 59.343 60.000 22.92 0.00 41.83 3.93
2998 3306 0.251354 AGTCGACGTAGACCTAGCCA 59.749 55.000 22.92 0.00 41.83 4.75
2999 3307 0.376502 GTCGACGTAGACCTAGCCAC 59.623 60.000 16.98 0.00 35.22 5.01
3000 3308 0.036105 TCGACGTAGACCTAGCCACA 60.036 55.000 0.00 0.00 0.00 4.17
3001 3309 0.098376 CGACGTAGACCTAGCCACAC 59.902 60.000 0.00 0.00 0.00 3.82
3002 3310 0.455005 GACGTAGACCTAGCCACACC 59.545 60.000 0.00 0.00 0.00 4.16
3003 3311 0.969409 ACGTAGACCTAGCCACACCC 60.969 60.000 0.00 0.00 0.00 4.61
3004 3312 0.683504 CGTAGACCTAGCCACACCCT 60.684 60.000 0.00 0.00 0.00 4.34
3005 3313 1.569653 GTAGACCTAGCCACACCCTT 58.430 55.000 0.00 0.00 0.00 3.95
3006 3314 1.207329 GTAGACCTAGCCACACCCTTG 59.793 57.143 0.00 0.00 0.00 3.61
3007 3315 1.377333 GACCTAGCCACACCCTTGC 60.377 63.158 0.00 0.00 0.00 4.01
3008 3316 2.124507 GACCTAGCCACACCCTTGCA 62.125 60.000 0.00 0.00 0.00 4.08
3009 3317 1.074775 CCTAGCCACACCCTTGCAA 59.925 57.895 0.00 0.00 0.00 4.08
3010 3318 0.539438 CCTAGCCACACCCTTGCAAA 60.539 55.000 0.00 0.00 0.00 3.68
3011 3319 1.327303 CTAGCCACACCCTTGCAAAA 58.673 50.000 0.00 0.00 0.00 2.44
3012 3320 1.686052 CTAGCCACACCCTTGCAAAAA 59.314 47.619 0.00 0.00 0.00 1.94
3013 3321 1.130777 AGCCACACCCTTGCAAAAAT 58.869 45.000 0.00 0.00 0.00 1.82
3014 3322 2.324541 AGCCACACCCTTGCAAAAATA 58.675 42.857 0.00 0.00 0.00 1.40
3015 3323 2.299867 AGCCACACCCTTGCAAAAATAG 59.700 45.455 0.00 0.00 0.00 1.73
3016 3324 2.298729 GCCACACCCTTGCAAAAATAGA 59.701 45.455 0.00 0.00 0.00 1.98
3017 3325 3.055891 GCCACACCCTTGCAAAAATAGAT 60.056 43.478 0.00 0.00 0.00 1.98
3018 3326 4.159506 GCCACACCCTTGCAAAAATAGATA 59.840 41.667 0.00 0.00 0.00 1.98
3019 3327 5.337169 GCCACACCCTTGCAAAAATAGATAA 60.337 40.000 0.00 0.00 0.00 1.75
3020 3328 6.696411 CCACACCCTTGCAAAAATAGATAAA 58.304 36.000 0.00 0.00 0.00 1.40
3021 3329 6.813152 CCACACCCTTGCAAAAATAGATAAAG 59.187 38.462 0.00 0.00 0.00 1.85
3022 3330 7.309744 CCACACCCTTGCAAAAATAGATAAAGA 60.310 37.037 0.00 0.00 0.00 2.52
3023 3331 7.756722 CACACCCTTGCAAAAATAGATAAAGAG 59.243 37.037 0.00 0.00 0.00 2.85
3024 3332 7.669722 ACACCCTTGCAAAAATAGATAAAGAGA 59.330 33.333 0.00 0.00 0.00 3.10
3025 3333 8.522830 CACCCTTGCAAAAATAGATAAAGAGAA 58.477 33.333 0.00 0.00 0.00 2.87
3026 3334 9.259832 ACCCTTGCAAAAATAGATAAAGAGAAT 57.740 29.630 0.00 0.00 0.00 2.40
3068 3376 6.496565 AGGTTCATTGAACATTGTTTATCCCA 59.503 34.615 26.27 0.00 43.54 4.37
3105 3413 6.830114 AGCGCTACTTTCATGTACTAAATC 57.170 37.500 8.99 0.00 0.00 2.17
3108 3416 6.237755 GCGCTACTTTCATGTACTAAATCGTT 60.238 38.462 0.00 0.00 0.00 3.85
3164 3472 1.040646 TGCATCTCGACCATCCTACC 58.959 55.000 0.00 0.00 0.00 3.18
3193 3501 9.138596 GGTTCCTTCTAGATCTTGTATCTAGTT 57.861 37.037 17.33 0.00 44.79 2.24
3222 3530 3.838244 TCGTCTAGCCATTTTGCCTAT 57.162 42.857 0.00 0.00 0.00 2.57
3226 3534 2.154462 CTAGCCATTTTGCCTATCCCG 58.846 52.381 0.00 0.00 0.00 5.14
3227 3535 0.258774 AGCCATTTTGCCTATCCCGT 59.741 50.000 0.00 0.00 0.00 5.28
3231 3539 3.283751 CCATTTTGCCTATCCCGTAACA 58.716 45.455 0.00 0.00 0.00 2.41
3256 3564 6.567050 TCTTATGGACTACACGTATTTGACC 58.433 40.000 0.00 0.00 0.00 4.02
3274 3582 3.456644 TGACCCAAACACTTAACTCTCCA 59.543 43.478 0.00 0.00 0.00 3.86
3291 3599 5.721960 ACTCTCCACATACACCAAGTCTTAT 59.278 40.000 0.00 0.00 0.00 1.73
3292 3600 6.895756 ACTCTCCACATACACCAAGTCTTATA 59.104 38.462 0.00 0.00 0.00 0.98
3293 3601 7.068839 ACTCTCCACATACACCAAGTCTTATAG 59.931 40.741 0.00 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.956199 AGTCCAATTATCCACAGGCAATG 59.044 43.478 0.00 0.00 0.00 2.82
26 27 3.355378 CAGTCCAATTATCCACAGGCAA 58.645 45.455 0.00 0.00 0.00 4.52
49 50 1.607251 GGTACAGAAAGGACACACCCG 60.607 57.143 0.00 0.00 40.05 5.28
137 139 3.568007 TGTGCTCTGCGGAAAAATAGTTT 59.432 39.130 0.00 0.00 0.00 2.66
159 166 2.359900 CGGAAAGGAGCTGCAAACTAT 58.640 47.619 8.35 0.00 0.00 2.12
172 179 1.915078 ATCAGCTCCACCCGGAAAGG 61.915 60.000 0.73 0.80 42.21 3.11
173 180 0.830648 TATCAGCTCCACCCGGAAAG 59.169 55.000 0.73 0.00 42.21 2.62
175 182 0.325296 AGTATCAGCTCCACCCGGAA 60.325 55.000 0.73 0.00 42.21 4.30
176 183 0.755698 GAGTATCAGCTCCACCCGGA 60.756 60.000 0.73 0.00 35.57 5.14
177 184 1.742768 GAGTATCAGCTCCACCCGG 59.257 63.158 0.00 0.00 33.17 5.73
178 185 1.360551 CGAGTATCAGCTCCACCCG 59.639 63.158 0.00 0.00 33.17 5.28
218 226 6.798427 AGGAAGCTTCACATACAGAATAGA 57.202 37.500 27.02 0.00 0.00 1.98
265 274 0.728129 GTGCGACGAACTCGACATCA 60.728 55.000 6.05 0.00 46.14 3.07
306 315 4.313282 GGGTTTAGGAATATCGTGCTACC 58.687 47.826 0.00 0.00 0.00 3.18
329 338 2.440409 TGCTCAAGGCTTTTGAGGATC 58.560 47.619 23.51 13.21 44.46 3.36
342 351 5.287226 GGCTTTGATTTGGATATGCTCAAG 58.713 41.667 0.00 0.00 0.00 3.02
352 361 2.297701 GGATAGCGGCTTTGATTTGGA 58.702 47.619 8.26 0.00 0.00 3.53
358 367 0.535335 AAGACGGATAGCGGCTTTGA 59.465 50.000 8.26 0.00 0.00 2.69
435 445 0.249955 GCTGCTCTCTTCTGCCTTCT 59.750 55.000 0.00 0.00 0.00 2.85
436 446 0.744057 GGCTGCTCTCTTCTGCCTTC 60.744 60.000 0.00 0.00 42.85 3.46
437 447 1.299321 GGCTGCTCTCTTCTGCCTT 59.701 57.895 0.00 0.00 42.85 4.35
438 448 2.988800 GGCTGCTCTCTTCTGCCT 59.011 61.111 0.00 0.00 42.85 4.75
471 481 1.683917 AGGGACACGATGACTATGAGC 59.316 52.381 0.00 0.00 0.00 4.26
499 509 5.759506 TGGTTTACATTTGTCAACACGAT 57.240 34.783 9.30 0.00 34.71 3.73
500 510 5.515184 CATGGTTTACATTTGTCAACACGA 58.485 37.500 9.30 0.00 37.84 4.35
528 538 8.902540 ATCGTTAGATTAATGATAAAGGTGCA 57.097 30.769 0.00 0.00 41.34 4.57
543 553 9.543231 TGGGTTTATATAGGAGATCGTTAGATT 57.457 33.333 0.00 0.00 37.19 2.40
547 557 7.120285 CGTCTGGGTTTATATAGGAGATCGTTA 59.880 40.741 0.00 0.00 0.00 3.18
548 558 6.072064 CGTCTGGGTTTATATAGGAGATCGTT 60.072 42.308 0.00 0.00 0.00 3.85
550 560 5.415077 ACGTCTGGGTTTATATAGGAGATCG 59.585 44.000 0.00 0.00 0.00 3.69
551 561 6.837471 ACGTCTGGGTTTATATAGGAGATC 57.163 41.667 0.00 0.00 0.00 2.75
552 562 6.373774 CGTACGTCTGGGTTTATATAGGAGAT 59.626 42.308 7.22 0.00 0.00 2.75
553 563 5.702670 CGTACGTCTGGGTTTATATAGGAGA 59.297 44.000 7.22 0.00 0.00 3.71
554 564 5.471456 ACGTACGTCTGGGTTTATATAGGAG 59.529 44.000 16.72 0.00 0.00 3.69
555 565 5.376625 ACGTACGTCTGGGTTTATATAGGA 58.623 41.667 16.72 0.00 0.00 2.94
556 566 5.695851 ACGTACGTCTGGGTTTATATAGG 57.304 43.478 16.72 0.00 0.00 2.57
561 571 3.665745 ACAACGTACGTCTGGGTTTAT 57.334 42.857 23.05 0.00 0.00 1.40
565 575 1.609208 AGTACAACGTACGTCTGGGT 58.391 50.000 23.05 18.51 0.00 4.51
703 713 1.367471 CGGAGTGGCACAGAACAGA 59.633 57.895 21.41 0.00 41.80 3.41
744 754 1.472904 GCCTACCTAAGCGGTCCTTTC 60.473 57.143 0.00 0.00 44.93 2.62
803 816 2.158959 GTGCTAGTGCTACCGTGCG 61.159 63.158 0.00 0.00 40.48 5.34
846 863 8.160106 AGCCATTTAAAGAAGAAGAAGAAGAGA 58.840 33.333 0.00 0.00 0.00 3.10
855 872 4.437930 CCAGCGAGCCATTTAAAGAAGAAG 60.438 45.833 0.00 0.00 0.00 2.85
856 873 3.440173 CCAGCGAGCCATTTAAAGAAGAA 59.560 43.478 0.00 0.00 0.00 2.52
857 874 3.009723 CCAGCGAGCCATTTAAAGAAGA 58.990 45.455 0.00 0.00 0.00 2.87
858 875 2.749621 ACCAGCGAGCCATTTAAAGAAG 59.250 45.455 0.00 0.00 0.00 2.85
859 876 2.790433 ACCAGCGAGCCATTTAAAGAA 58.210 42.857 0.00 0.00 0.00 2.52
860 877 2.489938 ACCAGCGAGCCATTTAAAGA 57.510 45.000 0.00 0.00 0.00 2.52
861 878 2.159379 GGAACCAGCGAGCCATTTAAAG 60.159 50.000 0.00 0.00 0.00 1.85
862 879 1.816224 GGAACCAGCGAGCCATTTAAA 59.184 47.619 0.00 0.00 0.00 1.52
863 880 1.271652 TGGAACCAGCGAGCCATTTAA 60.272 47.619 0.00 0.00 0.00 1.52
871 888 1.135972 CAACGAAATGGAACCAGCGAG 60.136 52.381 16.09 4.76 0.00 5.03
908 925 3.406361 CGCGCGGGATACATGCTC 61.406 66.667 24.84 0.00 37.35 4.26
946 981 1.659335 CCTTGCTGTTGCTGTTGCG 60.659 57.895 0.00 0.00 43.34 4.85
948 983 1.300388 GGCCTTGCTGTTGCTGTTG 60.300 57.895 0.00 0.00 40.48 3.33
949 984 1.741327 CTGGCCTTGCTGTTGCTGTT 61.741 55.000 3.32 0.00 40.48 3.16
950 985 2.123769 TGGCCTTGCTGTTGCTGT 60.124 55.556 3.32 0.00 40.48 4.40
951 986 2.649034 CTGGCCTTGCTGTTGCTG 59.351 61.111 3.32 0.00 40.48 4.41
952 987 3.300765 GCTGGCCTTGCTGTTGCT 61.301 61.111 3.32 0.00 40.48 3.91
953 988 3.608662 TGCTGGCCTTGCTGTTGC 61.609 61.111 19.10 5.54 40.20 4.17
954 989 2.337532 GTGCTGGCCTTGCTGTTG 59.662 61.111 19.10 0.00 0.00 3.33
955 990 2.914097 GGTGCTGGCCTTGCTGTT 60.914 61.111 19.10 0.00 0.00 3.16
980 1015 1.231197 TCCCTCCCTCCCTCCCTAA 60.231 63.158 0.00 0.00 0.00 2.69
990 1025 2.003548 GCAACCCATCTCCCTCCCT 61.004 63.158 0.00 0.00 0.00 4.20
995 1030 0.402121 GGGATAGCAACCCATCTCCC 59.598 60.000 7.79 0.00 46.05 4.30
1047 1086 0.026285 GACGCATCATACCGTTGCAC 59.974 55.000 0.00 0.00 39.84 4.57
1058 1097 1.827344 ACCATCAGAGAAGACGCATCA 59.173 47.619 0.00 0.00 0.00 3.07
1077 1141 6.007703 AGACCTAGGACTATCTATCAGCAAC 58.992 44.000 17.98 0.00 0.00 4.17
1081 1145 7.685481 TCTCAAGACCTAGGACTATCTATCAG 58.315 42.308 17.98 4.93 0.00 2.90
1129 1194 4.090090 AGAATGGTCCGAGAGAAGAAAGA 58.910 43.478 0.00 0.00 0.00 2.52
1143 1208 1.396301 CAAAGCTGCTCGAGAATGGTC 59.604 52.381 18.75 0.00 0.00 4.02
1153 1218 1.881602 CAGAAGGCCAAAGCTGCTC 59.118 57.895 5.01 0.00 39.73 4.26
1164 1236 0.376502 GAAAGATCAGCGCAGAAGGC 59.623 55.000 11.47 1.03 39.90 4.35
1177 1260 4.744795 AACGATACTCTGCCAGAAAGAT 57.255 40.909 0.00 0.00 0.00 2.40
1224 1308 5.251700 ACTGGAACAACCTATCCTGAGAAAT 59.748 40.000 5.81 0.00 38.70 2.17
1232 1316 1.207329 AGCGACTGGAACAACCTATCC 59.793 52.381 0.00 0.00 38.70 2.59
1241 1325 3.326747 ACTGAATTGTAGCGACTGGAAC 58.673 45.455 0.00 0.00 0.00 3.62
1242 1326 3.678056 ACTGAATTGTAGCGACTGGAA 57.322 42.857 0.00 0.00 0.00 3.53
1243 1327 3.258372 AGAACTGAATTGTAGCGACTGGA 59.742 43.478 0.00 0.00 0.00 3.86
1244 1328 3.369147 CAGAACTGAATTGTAGCGACTGG 59.631 47.826 0.00 0.00 0.00 4.00
1245 1329 3.181526 GCAGAACTGAATTGTAGCGACTG 60.182 47.826 5.97 0.00 0.00 3.51
1246 1330 2.996621 GCAGAACTGAATTGTAGCGACT 59.003 45.455 5.97 0.00 0.00 4.18
1271 1355 3.109619 TGCAAAGAAAAAGTTAACGGCG 58.890 40.909 4.80 4.80 0.00 6.46
1274 1358 9.829637 GAAACTTATGCAAAGAAAAAGTTAACG 57.170 29.630 13.35 0.00 38.95 3.18
1279 1363 9.516314 GTACAGAAACTTATGCAAAGAAAAAGT 57.484 29.630 13.35 4.52 31.94 2.66
1280 1364 8.968242 GGTACAGAAACTTATGCAAAGAAAAAG 58.032 33.333 13.35 4.01 0.00 2.27
1315 1425 5.165961 AGGAATGCTACTAACAAAGCTCA 57.834 39.130 0.00 0.00 39.53 4.26
1324 1434 9.162764 GAGTCAAACAATAAGGAATGCTACTAA 57.837 33.333 0.00 0.00 0.00 2.24
1355 1465 5.800941 ACAAACTTTGCGTATTCGTGAAAAA 59.199 32.000 1.14 0.00 39.49 1.94
1356 1466 5.333513 ACAAACTTTGCGTATTCGTGAAAA 58.666 33.333 1.14 0.00 39.49 2.29
1357 1467 4.911053 ACAAACTTTGCGTATTCGTGAAA 58.089 34.783 1.14 0.00 39.49 2.69
1358 1468 4.539509 ACAAACTTTGCGTATTCGTGAA 57.460 36.364 1.14 0.00 39.49 3.18
1359 1469 5.177881 ACATACAAACTTTGCGTATTCGTGA 59.822 36.000 1.14 0.00 39.49 4.35
1360 1470 5.379003 ACATACAAACTTTGCGTATTCGTG 58.621 37.500 1.14 0.00 39.49 4.35
1361 1471 5.407387 AGACATACAAACTTTGCGTATTCGT 59.593 36.000 1.14 0.00 39.49 3.85
1362 1472 5.854157 AGACATACAAACTTTGCGTATTCG 58.146 37.500 1.14 0.00 40.37 3.34
1363 1473 8.502161 AAAAGACATACAAACTTTGCGTATTC 57.498 30.769 1.14 0.00 34.70 1.75
1364 1474 8.132362 TGAAAAGACATACAAACTTTGCGTATT 58.868 29.630 1.14 0.00 33.36 1.89
1365 1475 7.644490 TGAAAAGACATACAAACTTTGCGTAT 58.356 30.769 1.14 0.00 33.36 3.06
1366 1476 7.017498 TGAAAAGACATACAAACTTTGCGTA 57.983 32.000 1.14 0.00 33.36 4.42
1367 1477 5.885881 TGAAAAGACATACAAACTTTGCGT 58.114 33.333 1.14 0.00 33.36 5.24
1368 1478 6.991485 ATGAAAAGACATACAAACTTTGCG 57.009 33.333 1.14 0.00 33.36 4.85
1369 1479 8.351495 TCAATGAAAAGACATACAAACTTTGC 57.649 30.769 1.14 0.00 34.70 3.68
1399 1509 9.579932 ACCTTTGTTCTCATTTTATCTTCTTCT 57.420 29.630 0.00 0.00 0.00 2.85
1402 1512 9.454859 CCTACCTTTGTTCTCATTTTATCTTCT 57.545 33.333 0.00 0.00 0.00 2.85
1403 1513 8.678199 CCCTACCTTTGTTCTCATTTTATCTTC 58.322 37.037 0.00 0.00 0.00 2.87
1404 1514 8.170730 ACCCTACCTTTGTTCTCATTTTATCTT 58.829 33.333 0.00 0.00 0.00 2.40
1405 1515 7.699878 ACCCTACCTTTGTTCTCATTTTATCT 58.300 34.615 0.00 0.00 0.00 1.98
1406 1516 7.939784 ACCCTACCTTTGTTCTCATTTTATC 57.060 36.000 0.00 0.00 0.00 1.75
1407 1517 8.387813 TGTACCCTACCTTTGTTCTCATTTTAT 58.612 33.333 0.00 0.00 0.00 1.40
1408 1518 7.747690 TGTACCCTACCTTTGTTCTCATTTTA 58.252 34.615 0.00 0.00 0.00 1.52
1409 1519 6.607019 TGTACCCTACCTTTGTTCTCATTTT 58.393 36.000 0.00 0.00 0.00 1.82
1410 1520 6.195600 TGTACCCTACCTTTGTTCTCATTT 57.804 37.500 0.00 0.00 0.00 2.32
1411 1521 5.836024 TGTACCCTACCTTTGTTCTCATT 57.164 39.130 0.00 0.00 0.00 2.57
1412 1522 5.487488 TGATGTACCCTACCTTTGTTCTCAT 59.513 40.000 0.00 0.00 0.00 2.90
1413 1523 4.841813 TGATGTACCCTACCTTTGTTCTCA 59.158 41.667 0.00 0.00 0.00 3.27
1414 1524 5.176592 GTGATGTACCCTACCTTTGTTCTC 58.823 45.833 0.00 0.00 0.00 2.87
1415 1525 4.595781 TGTGATGTACCCTACCTTTGTTCT 59.404 41.667 0.00 0.00 0.00 3.01
1416 1526 4.901868 TGTGATGTACCCTACCTTTGTTC 58.098 43.478 0.00 0.00 0.00 3.18
1417 1527 4.986054 TGTGATGTACCCTACCTTTGTT 57.014 40.909 0.00 0.00 0.00 2.83
1418 1528 4.324254 CCATGTGATGTACCCTACCTTTGT 60.324 45.833 0.00 0.00 0.00 2.83
1419 1529 4.199310 CCATGTGATGTACCCTACCTTTG 58.801 47.826 0.00 0.00 0.00 2.77
1420 1530 3.371595 GCCATGTGATGTACCCTACCTTT 60.372 47.826 0.00 0.00 0.00 3.11
1421 1531 2.172717 GCCATGTGATGTACCCTACCTT 59.827 50.000 0.00 0.00 0.00 3.50
1422 1532 1.768870 GCCATGTGATGTACCCTACCT 59.231 52.381 0.00 0.00 0.00 3.08
1423 1533 1.488812 TGCCATGTGATGTACCCTACC 59.511 52.381 0.00 0.00 0.00 3.18
1424 1534 2.093181 TGTGCCATGTGATGTACCCTAC 60.093 50.000 0.00 0.00 0.00 3.18
1425 1535 2.170397 CTGTGCCATGTGATGTACCCTA 59.830 50.000 0.00 0.00 0.00 3.53
1426 1536 0.991146 TGTGCCATGTGATGTACCCT 59.009 50.000 0.00 0.00 0.00 4.34
1427 1537 1.382522 CTGTGCCATGTGATGTACCC 58.617 55.000 0.00 0.00 0.00 3.69
1428 1538 0.734889 GCTGTGCCATGTGATGTACC 59.265 55.000 0.00 0.00 0.00 3.34
1448 1558 5.457140 ACAATATGTTTACGCCAGTTTGTG 58.543 37.500 0.00 0.00 0.00 3.33
1449 1559 5.472137 AGACAATATGTTTACGCCAGTTTGT 59.528 36.000 0.00 0.00 0.00 2.83
1450 1560 5.794945 CAGACAATATGTTTACGCCAGTTTG 59.205 40.000 0.00 0.00 0.00 2.93
1451 1561 5.106317 CCAGACAATATGTTTACGCCAGTTT 60.106 40.000 0.00 0.00 0.00 2.66
1452 1562 4.394920 CCAGACAATATGTTTACGCCAGTT 59.605 41.667 0.00 0.00 0.00 3.16
1453 1563 3.938963 CCAGACAATATGTTTACGCCAGT 59.061 43.478 0.00 0.00 0.00 4.00
1454 1564 4.188462 TCCAGACAATATGTTTACGCCAG 58.812 43.478 0.00 0.00 0.00 4.85
1455 1565 4.188462 CTCCAGACAATATGTTTACGCCA 58.812 43.478 0.00 0.00 0.00 5.69
1456 1566 3.002348 GCTCCAGACAATATGTTTACGCC 59.998 47.826 0.00 0.00 0.00 5.68
1457 1567 3.621268 TGCTCCAGACAATATGTTTACGC 59.379 43.478 0.00 0.00 0.00 4.42
1458 1568 5.109210 TCTGCTCCAGACAATATGTTTACG 58.891 41.667 0.00 0.00 35.39 3.18
1459 1569 6.985188 TTCTGCTCCAGACAATATGTTTAC 57.015 37.500 0.00 0.00 40.46 2.01
1460 1570 7.394016 TCTTTCTGCTCCAGACAATATGTTTA 58.606 34.615 0.00 0.00 40.46 2.01
1461 1571 6.240894 TCTTTCTGCTCCAGACAATATGTTT 58.759 36.000 0.00 0.00 40.46 2.83
1462 1572 5.809001 TCTTTCTGCTCCAGACAATATGTT 58.191 37.500 0.00 0.00 40.46 2.71
1463 1573 5.426689 TCTTTCTGCTCCAGACAATATGT 57.573 39.130 0.00 0.00 40.46 2.29
1464 1574 6.939132 AATCTTTCTGCTCCAGACAATATG 57.061 37.500 0.00 0.00 40.46 1.78
1465 1575 6.320672 CCAAATCTTTCTGCTCCAGACAATAT 59.679 38.462 0.00 0.00 40.46 1.28
1466 1576 5.649395 CCAAATCTTTCTGCTCCAGACAATA 59.351 40.000 0.00 0.00 40.46 1.90
1467 1577 4.461781 CCAAATCTTTCTGCTCCAGACAAT 59.538 41.667 0.00 0.00 40.46 2.71
1468 1578 3.822735 CCAAATCTTTCTGCTCCAGACAA 59.177 43.478 0.00 0.00 40.46 3.18
1469 1579 3.415212 CCAAATCTTTCTGCTCCAGACA 58.585 45.455 0.00 0.00 40.46 3.41
1470 1580 2.751806 CCCAAATCTTTCTGCTCCAGAC 59.248 50.000 0.00 0.00 40.46 3.51
1471 1581 2.644299 TCCCAAATCTTTCTGCTCCAGA 59.356 45.455 0.00 0.00 38.87 3.86
1472 1582 3.077484 TCCCAAATCTTTCTGCTCCAG 57.923 47.619 0.00 0.00 0.00 3.86
1473 1583 3.359033 CATCCCAAATCTTTCTGCTCCA 58.641 45.455 0.00 0.00 0.00 3.86
1474 1584 2.692041 CCATCCCAAATCTTTCTGCTCC 59.308 50.000 0.00 0.00 0.00 4.70
1475 1585 2.100418 GCCATCCCAAATCTTTCTGCTC 59.900 50.000 0.00 0.00 0.00 4.26
1476 1586 2.105766 GCCATCCCAAATCTTTCTGCT 58.894 47.619 0.00 0.00 0.00 4.24
1477 1587 1.137675 GGCCATCCCAAATCTTTCTGC 59.862 52.381 0.00 0.00 0.00 4.26
1478 1588 1.406539 CGGCCATCCCAAATCTTTCTG 59.593 52.381 2.24 0.00 0.00 3.02
1479 1589 1.686115 CCGGCCATCCCAAATCTTTCT 60.686 52.381 2.24 0.00 0.00 2.52
1480 1590 0.746659 CCGGCCATCCCAAATCTTTC 59.253 55.000 2.24 0.00 0.00 2.62
1481 1591 1.329913 GCCGGCCATCCCAAATCTTT 61.330 55.000 18.11 0.00 0.00 2.52
1482 1592 1.758122 GCCGGCCATCCCAAATCTT 60.758 57.895 18.11 0.00 0.00 2.40
1483 1593 2.123726 GCCGGCCATCCCAAATCT 60.124 61.111 18.11 0.00 0.00 2.40
1484 1594 3.226537 GGCCGGCCATCCCAAATC 61.227 66.667 40.73 8.62 35.81 2.17
1485 1595 1.943730 TAAGGCCGGCCATCCCAAAT 61.944 55.000 45.13 21.51 38.92 2.32
1486 1596 1.943730 ATAAGGCCGGCCATCCCAAA 61.944 55.000 45.13 20.77 38.92 3.28
1487 1597 1.943730 AATAAGGCCGGCCATCCCAA 61.944 55.000 45.13 21.19 38.92 4.12
1488 1598 2.391130 AATAAGGCCGGCCATCCCA 61.391 57.895 45.13 25.35 38.92 4.37
1489 1599 1.903404 CAATAAGGCCGGCCATCCC 60.903 63.158 45.13 20.27 38.92 3.85
1490 1600 0.755327 AACAATAAGGCCGGCCATCC 60.755 55.000 45.13 20.70 38.92 3.51
1491 1601 1.111277 AAACAATAAGGCCGGCCATC 58.889 50.000 45.13 21.11 38.92 3.51
1492 1602 2.429250 GTTAAACAATAAGGCCGGCCAT 59.571 45.455 45.13 37.20 38.92 4.40
1493 1603 1.819903 GTTAAACAATAAGGCCGGCCA 59.180 47.619 45.13 28.44 38.92 5.36
1494 1604 2.097036 AGTTAAACAATAAGGCCGGCC 58.903 47.619 39.29 39.29 0.00 6.13
1495 1605 2.750712 TGAGTTAAACAATAAGGCCGGC 59.249 45.455 21.18 21.18 0.00 6.13
1496 1606 4.398044 ACATGAGTTAAACAATAAGGCCGG 59.602 41.667 0.00 0.00 0.00 6.13
1497 1607 5.123186 TGACATGAGTTAAACAATAAGGCCG 59.877 40.000 0.00 0.00 0.00 6.13
1498 1608 6.322491 GTGACATGAGTTAAACAATAAGGCC 58.678 40.000 0.00 0.00 0.00 5.19
1499 1609 6.021596 CGTGACATGAGTTAAACAATAAGGC 58.978 40.000 0.00 0.00 0.00 4.35
1500 1610 7.015289 CACGTGACATGAGTTAAACAATAAGG 58.985 38.462 10.90 0.00 0.00 2.69
1501 1611 7.792925 TCACGTGACATGAGTTAAACAATAAG 58.207 34.615 15.76 0.00 0.00 1.73
1534 1644 3.136009 TGGAGTTCTGAGACTACACGA 57.864 47.619 0.00 0.00 35.58 4.35
1535 1645 3.566523 GTTGGAGTTCTGAGACTACACG 58.433 50.000 4.94 0.00 40.14 4.49
1580 1690 2.543012 CCGAGCTCACAAATATCAGCTG 59.457 50.000 15.40 7.63 42.40 4.24
1588 1698 1.741770 GTCGCCCGAGCTCACAAAT 60.742 57.895 15.40 0.00 36.60 2.32
1600 1710 2.980233 GCCCTGCATATGTCGCCC 60.980 66.667 4.29 0.00 0.00 6.13
1622 1732 1.070445 CTGGTCCTCCATCCATCGC 59.930 63.158 0.00 0.00 43.43 4.58
1743 1853 0.970427 GGGTTTGGCGGGATCATGTT 60.970 55.000 0.00 0.00 0.00 2.71
1807 1923 4.299796 ATTGGGGTGGCGGTGCTT 62.300 61.111 0.00 0.00 0.00 3.91
1814 1930 4.133796 GCTTGCGATTGGGGTGGC 62.134 66.667 0.00 0.00 0.00 5.01
1816 1932 4.481112 GCGCTTGCGATTGGGGTG 62.481 66.667 19.55 0.00 0.00 4.61
1819 1935 4.481112 GTGGCGCTTGCGATTGGG 62.481 66.667 19.55 0.00 40.46 4.12
1820 1936 4.481112 GGTGGCGCTTGCGATTGG 62.481 66.667 19.55 0.00 40.46 3.16
1821 1937 3.736100 TGGTGGCGCTTGCGATTG 61.736 61.111 19.55 0.00 40.46 2.67
1822 1938 3.737172 GTGGTGGCGCTTGCGATT 61.737 61.111 19.55 0.00 40.46 3.34
2036 2152 3.630013 TGCTCCGGCTGCTGTTCT 61.630 61.111 17.67 0.00 39.59 3.01
2195 2311 0.659957 GGTAGCTGTACCGGTACTCG 59.340 60.000 37.37 29.31 39.60 4.18
2319 2435 2.032528 TTCAAGCGCTCAGGGTGG 59.967 61.111 12.06 0.00 0.00 4.61
2383 2507 2.096496 CGGTGCAAAGAGCTAATGGAAG 59.904 50.000 0.00 0.00 45.94 3.46
2445 2569 5.789574 ACTATTCCCCCTTTCAACATACA 57.210 39.130 0.00 0.00 0.00 2.29
2516 2652 7.539022 AGCATCATGAAAGTAATATCGTACGAG 59.461 37.037 23.89 5.10 0.00 4.18
2576 2714 4.218417 GTGGCCAACAATCATTGACTAACT 59.782 41.667 7.24 0.00 0.00 2.24
2577 2715 4.485163 GTGGCCAACAATCATTGACTAAC 58.515 43.478 7.24 0.00 0.00 2.34
2622 2760 5.528870 TCGCATACACCTATTAGACACATG 58.471 41.667 0.00 0.00 0.00 3.21
2633 2771 2.549992 GCATTCCCATCGCATACACCTA 60.550 50.000 0.00 0.00 0.00 3.08
2656 2794 1.444553 GGAGACGGTCGCTGTTCAG 60.445 63.158 11.61 0.00 0.00 3.02
2687 2825 4.928601 TGATCACGTAAAATCTAGACCGG 58.071 43.478 0.00 0.00 0.00 5.28
2697 2835 7.936950 TTTGCAATGATTTGATCACGTAAAA 57.063 28.000 0.00 0.00 43.01 1.52
2724 2862 7.012327 TCAGTCAATTGAGACTTACCAAAACTG 59.988 37.037 8.80 8.38 46.26 3.16
2727 2865 6.486657 CCTCAGTCAATTGAGACTTACCAAAA 59.513 38.462 8.80 0.00 46.26 2.44
2729 2867 5.551233 CCTCAGTCAATTGAGACTTACCAA 58.449 41.667 8.80 0.00 46.26 3.67
2730 2868 4.563580 GCCTCAGTCAATTGAGACTTACCA 60.564 45.833 8.80 0.00 46.26 3.25
2731 2869 3.935828 GCCTCAGTCAATTGAGACTTACC 59.064 47.826 8.80 0.00 46.26 2.85
2733 2871 5.012046 TGAAGCCTCAGTCAATTGAGACTTA 59.988 40.000 8.80 0.00 44.54 2.24
2734 2872 4.202398 TGAAGCCTCAGTCAATTGAGACTT 60.202 41.667 8.80 0.53 46.33 3.01
2736 2874 3.668447 TGAAGCCTCAGTCAATTGAGAC 58.332 45.455 8.80 0.00 45.95 3.36
2737 2875 4.564782 ATGAAGCCTCAGTCAATTGAGA 57.435 40.909 8.80 2.68 45.95 3.27
2738 2876 6.318144 ACATAATGAAGCCTCAGTCAATTGAG 59.682 38.462 8.80 0.00 43.35 3.02
2739 2877 6.182627 ACATAATGAAGCCTCAGTCAATTGA 58.817 36.000 3.38 3.38 34.23 2.57
2740 2878 6.318144 AGACATAATGAAGCCTCAGTCAATTG 59.682 38.462 0.00 0.00 34.23 2.32
2741 2879 6.421485 AGACATAATGAAGCCTCAGTCAATT 58.579 36.000 5.52 0.00 34.23 2.32
2742 2880 5.999044 AGACATAATGAAGCCTCAGTCAAT 58.001 37.500 5.52 0.00 34.23 2.57
2743 2881 5.046376 TGAGACATAATGAAGCCTCAGTCAA 60.046 40.000 5.52 0.00 34.23 3.18
2745 2883 5.016051 TGAGACATAATGAAGCCTCAGTC 57.984 43.478 0.00 0.00 34.23 3.51
2746 2884 5.181748 GTTGAGACATAATGAAGCCTCAGT 58.818 41.667 0.00 0.00 34.23 3.41
2747 2885 4.574013 GGTTGAGACATAATGAAGCCTCAG 59.426 45.833 0.00 0.00 34.23 3.35
2748 2886 4.517285 GGTTGAGACATAATGAAGCCTCA 58.483 43.478 0.00 0.00 35.56 3.86
2749 2887 3.557595 CGGTTGAGACATAATGAAGCCTC 59.442 47.826 0.00 0.00 0.00 4.70
2751 2889 3.531538 TCGGTTGAGACATAATGAAGCC 58.468 45.455 0.00 0.00 0.00 4.35
2752 2890 4.553547 GCATCGGTTGAGACATAATGAAGC 60.554 45.833 0.00 0.00 0.00 3.86
2753 2891 4.813161 AGCATCGGTTGAGACATAATGAAG 59.187 41.667 0.00 0.00 0.00 3.02
2754 2892 4.769688 AGCATCGGTTGAGACATAATGAA 58.230 39.130 0.00 0.00 0.00 2.57
2755 2893 4.406648 AGCATCGGTTGAGACATAATGA 57.593 40.909 0.00 0.00 0.00 2.57
2756 2894 6.162079 AGATAGCATCGGTTGAGACATAATG 58.838 40.000 0.00 0.00 0.00 1.90
2757 2895 6.352016 AGATAGCATCGGTTGAGACATAAT 57.648 37.500 0.00 0.00 0.00 1.28
2759 2897 5.791336 AAGATAGCATCGGTTGAGACATA 57.209 39.130 0.00 0.00 0.00 2.29
2760 2898 4.679373 AAGATAGCATCGGTTGAGACAT 57.321 40.909 0.00 0.00 0.00 3.06
2762 2900 5.803020 AAAAAGATAGCATCGGTTGAGAC 57.197 39.130 0.00 0.00 0.00 3.36
2832 2970 9.228949 ACGAAGAGAGTAGTATGTAAGAAGAAA 57.771 33.333 0.00 0.00 0.00 2.52
2833 2971 8.789825 ACGAAGAGAGTAGTATGTAAGAAGAA 57.210 34.615 0.00 0.00 0.00 2.52
2834 2972 8.789825 AACGAAGAGAGTAGTATGTAAGAAGA 57.210 34.615 0.00 0.00 0.00 2.87
2835 2973 9.493206 GAAACGAAGAGAGTAGTATGTAAGAAG 57.507 37.037 0.00 0.00 0.00 2.85
2836 2974 9.006839 TGAAACGAAGAGAGTAGTATGTAAGAA 57.993 33.333 0.00 0.00 0.00 2.52
2837 2975 8.557592 TGAAACGAAGAGAGTAGTATGTAAGA 57.442 34.615 0.00 0.00 0.00 2.10
2838 2976 9.622004 TTTGAAACGAAGAGAGTAGTATGTAAG 57.378 33.333 0.00 0.00 0.00 2.34
2846 2984 7.537991 ACGAGTAATTTGAAACGAAGAGAGTAG 59.462 37.037 0.00 0.00 0.00 2.57
2852 2990 5.749588 TGTGACGAGTAATTTGAAACGAAGA 59.250 36.000 0.00 0.00 0.00 2.87
2855 2993 5.283294 TCTGTGACGAGTAATTTGAAACGA 58.717 37.500 0.00 0.00 0.00 3.85
2857 2995 7.323656 CCATTTCTGTGACGAGTAATTTGAAAC 59.676 37.037 0.00 0.00 0.00 2.78
2860 2998 6.227522 TCCATTTCTGTGACGAGTAATTTGA 58.772 36.000 0.00 0.00 0.00 2.69
2865 3003 5.147330 ACATCCATTTCTGTGACGAGTAA 57.853 39.130 0.00 0.00 0.00 2.24
2868 3006 5.595885 AGATACATCCATTTCTGTGACGAG 58.404 41.667 0.00 0.00 0.00 4.18
2869 3007 5.598416 AGATACATCCATTTCTGTGACGA 57.402 39.130 0.00 0.00 0.00 4.20
2870 3008 6.739112 TCTAGATACATCCATTTCTGTGACG 58.261 40.000 0.00 0.00 0.00 4.35
2871 3009 8.200792 AGTTCTAGATACATCCATTTCTGTGAC 58.799 37.037 0.00 0.00 0.00 3.67
2872 3010 8.311395 AGTTCTAGATACATCCATTTCTGTGA 57.689 34.615 0.00 0.00 0.00 3.58
2900 3038 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
2902 3040 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
2903 3041 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
2904 3042 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
2905 3043 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
2906 3044 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
2907 3045 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
2908 3046 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
2909 3047 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2910 3048 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
2911 3049 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2912 3050 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2915 3053 4.481368 TTTACTTGTCGCAGGTATGGAT 57.519 40.909 3.46 0.00 0.00 3.41
2916 3054 3.965379 TTTACTTGTCGCAGGTATGGA 57.035 42.857 3.46 0.00 0.00 3.41
2917 3055 4.634004 TCAATTTACTTGTCGCAGGTATGG 59.366 41.667 3.46 0.00 36.20 2.74
2920 3228 5.333492 CGTTTCAATTTACTTGTCGCAGGTA 60.333 40.000 0.00 0.00 36.20 3.08
2922 3230 3.906008 CGTTTCAATTTACTTGTCGCAGG 59.094 43.478 0.00 0.00 36.20 4.85
2923 3231 3.906008 CCGTTTCAATTTACTTGTCGCAG 59.094 43.478 0.00 0.00 36.20 5.18
2926 3234 4.378046 CCCTCCGTTTCAATTTACTTGTCG 60.378 45.833 0.00 0.00 36.20 4.35
2931 3239 4.635699 ACTCCCTCCGTTTCAATTTACT 57.364 40.909 0.00 0.00 0.00 2.24
2932 3240 7.929785 TGATATACTCCCTCCGTTTCAATTTAC 59.070 37.037 0.00 0.00 0.00 2.01
2935 3243 6.099845 AGTGATATACTCCCTCCGTTTCAATT 59.900 38.462 0.00 0.00 33.17 2.32
2936 3244 5.602978 AGTGATATACTCCCTCCGTTTCAAT 59.397 40.000 0.00 0.00 33.17 2.57
2941 3249 4.341520 GTCAAGTGATATACTCCCTCCGTT 59.658 45.833 0.00 0.00 39.18 4.44
2945 3253 6.016610 GTCTCAGTCAAGTGATATACTCCCTC 60.017 46.154 0.00 0.00 39.18 4.30
2949 3257 7.147983 ACCAAGTCTCAGTCAAGTGATATACTC 60.148 40.741 0.00 0.00 39.18 2.59
2954 3262 5.080337 AGACCAAGTCTCAGTCAAGTGATA 58.920 41.667 5.32 0.00 38.71 2.15
2955 3263 3.900601 AGACCAAGTCTCAGTCAAGTGAT 59.099 43.478 5.32 0.00 38.71 3.06
2956 3264 3.300388 AGACCAAGTCTCAGTCAAGTGA 58.700 45.455 5.32 0.00 38.71 3.41
2957 3265 3.742433 AGACCAAGTCTCAGTCAAGTG 57.258 47.619 5.32 0.00 38.71 3.16
2967 3275 0.875728 CGTCGACTGAGACCAAGTCT 59.124 55.000 14.70 0.00 46.42 3.24
2968 3276 0.592148 ACGTCGACTGAGACCAAGTC 59.408 55.000 14.70 0.00 37.85 3.01
2969 3277 1.805345 CTACGTCGACTGAGACCAAGT 59.195 52.381 14.70 3.12 37.85 3.16
2970 3278 2.074576 TCTACGTCGACTGAGACCAAG 58.925 52.381 14.70 0.00 37.85 3.61
2971 3279 1.802960 GTCTACGTCGACTGAGACCAA 59.197 52.381 25.17 3.13 37.85 3.67
2972 3280 1.436600 GTCTACGTCGACTGAGACCA 58.563 55.000 25.17 3.41 37.85 4.02
2974 3282 1.724429 AGGTCTACGTCGACTGAGAC 58.276 55.000 26.54 26.54 38.06 3.36
2975 3283 2.738000 GCTAGGTCTACGTCGACTGAGA 60.738 54.545 18.40 12.63 34.38 3.27
2976 3284 1.593933 GCTAGGTCTACGTCGACTGAG 59.406 57.143 18.40 15.73 34.38 3.35
2977 3285 1.649664 GCTAGGTCTACGTCGACTGA 58.350 55.000 18.40 6.35 34.38 3.41
2978 3286 0.656785 GGCTAGGTCTACGTCGACTG 59.343 60.000 18.40 9.79 34.38 3.51
2979 3287 0.251354 TGGCTAGGTCTACGTCGACT 59.749 55.000 18.40 8.37 34.38 4.18
2980 3288 0.376502 GTGGCTAGGTCTACGTCGAC 59.623 60.000 11.56 11.56 0.00 4.20
2981 3289 0.036105 TGTGGCTAGGTCTACGTCGA 60.036 55.000 0.00 0.00 0.00 4.20
2982 3290 0.098376 GTGTGGCTAGGTCTACGTCG 59.902 60.000 0.00 0.00 0.00 5.12
2983 3291 0.455005 GGTGTGGCTAGGTCTACGTC 59.545 60.000 0.00 0.00 0.00 4.34
2984 3292 0.969409 GGGTGTGGCTAGGTCTACGT 60.969 60.000 0.00 0.00 0.00 3.57
2985 3293 0.683504 AGGGTGTGGCTAGGTCTACG 60.684 60.000 0.00 0.00 0.00 3.51
2986 3294 1.207329 CAAGGGTGTGGCTAGGTCTAC 59.793 57.143 0.00 0.00 0.00 2.59
2987 3295 1.568504 CAAGGGTGTGGCTAGGTCTA 58.431 55.000 0.00 0.00 0.00 2.59
2988 3296 1.842381 GCAAGGGTGTGGCTAGGTCT 61.842 60.000 0.00 0.00 0.00 3.85
2989 3297 1.377333 GCAAGGGTGTGGCTAGGTC 60.377 63.158 0.00 0.00 0.00 3.85
2990 3298 1.715019 TTGCAAGGGTGTGGCTAGGT 61.715 55.000 0.00 0.00 0.00 3.08
2991 3299 0.539438 TTTGCAAGGGTGTGGCTAGG 60.539 55.000 0.00 0.00 0.00 3.02
2992 3300 1.327303 TTTTGCAAGGGTGTGGCTAG 58.673 50.000 0.00 0.00 0.00 3.42
2993 3301 1.781786 TTTTTGCAAGGGTGTGGCTA 58.218 45.000 0.00 0.00 0.00 3.93
2994 3302 1.130777 ATTTTTGCAAGGGTGTGGCT 58.869 45.000 0.00 0.00 0.00 4.75
2995 3303 2.298729 TCTATTTTTGCAAGGGTGTGGC 59.701 45.455 0.00 0.00 0.00 5.01
2996 3304 4.806640 ATCTATTTTTGCAAGGGTGTGG 57.193 40.909 0.00 0.00 0.00 4.17
2997 3305 7.601856 TCTTTATCTATTTTTGCAAGGGTGTG 58.398 34.615 0.00 0.00 0.00 3.82
2998 3306 7.669722 TCTCTTTATCTATTTTTGCAAGGGTGT 59.330 33.333 0.00 0.00 0.00 4.16
2999 3307 8.055279 TCTCTTTATCTATTTTTGCAAGGGTG 57.945 34.615 0.00 0.00 0.00 4.61
3000 3308 8.650143 TTCTCTTTATCTATTTTTGCAAGGGT 57.350 30.769 0.00 0.00 0.00 4.34
3040 3348 8.253113 GGATAAACAATGTTCAATGAACCTCAT 58.747 33.333 21.75 7.59 41.35 2.90
3042 3350 7.035612 GGGATAAACAATGTTCAATGAACCTC 58.964 38.462 21.75 1.00 41.35 3.85
3063 3371 3.557898 CGCTAATAGCCATGTCTTGGGAT 60.558 47.826 6.69 0.00 46.55 3.85
3068 3376 2.918712 AGCGCTAATAGCCATGTCTT 57.081 45.000 8.99 0.00 38.18 3.01
3076 3384 5.921408 AGTACATGAAAGTAGCGCTAATAGC 59.079 40.000 20.73 13.80 38.02 2.97
3083 3391 5.231568 ACGATTTAGTACATGAAAGTAGCGC 59.768 40.000 0.00 0.00 0.00 5.92
3105 3413 5.051240 GCTTTGGTTGATCCGTACTATAACG 60.051 44.000 0.00 0.00 42.49 3.18
3108 3416 4.202284 GGGCTTTGGTTGATCCGTACTATA 60.202 45.833 0.00 0.00 39.52 1.31
3115 3423 2.406616 CGGGGCTTTGGTTGATCCG 61.407 63.158 0.00 0.00 39.52 4.18
3164 3472 7.961351 AGATACAAGATCTAGAAGGAACCATG 58.039 38.462 0.00 0.00 0.00 3.66
3193 3501 5.353394 AAATGGCTAGACGAAGATGGTAA 57.647 39.130 0.00 0.00 0.00 2.85
3222 3530 5.068198 GTGTAGTCCATAAGATGTTACGGGA 59.932 44.000 0.00 0.00 0.00 5.14
3226 3534 9.525409 AAATACGTGTAGTCCATAAGATGTTAC 57.475 33.333 0.00 0.00 0.00 2.50
3227 3535 9.524106 CAAATACGTGTAGTCCATAAGATGTTA 57.476 33.333 0.00 0.00 0.00 2.41
3231 3539 7.208080 GGTCAAATACGTGTAGTCCATAAGAT 58.792 38.462 0.00 0.00 0.00 2.40
3256 3564 5.995282 TGTATGTGGAGAGTTAAGTGTTTGG 59.005 40.000 0.00 0.00 0.00 3.28
3274 3582 9.869667 AGATCTACTATAAGACTTGGTGTATGT 57.130 33.333 0.00 0.00 0.00 2.29



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.