Multiple sequence alignment - TraesCS6A01G277200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G277200 chr6A 100.000 3575 0 0 1 3575 504395745 504392171 0.000000e+00 6602.0
1 TraesCS6A01G277200 chr6A 85.586 222 30 2 1354 1574 504197963 504197743 7.720000e-57 231.0
2 TraesCS6A01G277200 chr6A 90.964 166 9 3 302 465 384090259 384090098 6.010000e-53 219.0
3 TraesCS6A01G277200 chr6A 88.824 170 11 5 297 465 501791055 501791217 6.050000e-48 202.0
4 TraesCS6A01G277200 chr6D 91.024 1103 59 12 490 1576 363455886 363454808 0.000000e+00 1452.0
5 TraesCS6A01G277200 chr6D 92.828 990 59 4 1634 2618 363454794 363453812 0.000000e+00 1424.0
6 TraesCS6A01G277200 chr6D 90.909 671 60 1 2905 3575 363453151 363452482 0.000000e+00 900.0
7 TraesCS6A01G277200 chr6B 90.313 991 58 14 1634 2617 545466171 545465212 0.000000e+00 1264.0
8 TraesCS6A01G277200 chr6B 87.927 439 40 9 915 1343 545468693 545468258 4.120000e-139 505.0
9 TraesCS6A01G277200 chr6B 79.297 512 74 21 1084 1574 545394371 545393871 2.660000e-86 329.0
10 TraesCS6A01G277200 chr6B 88.390 267 26 5 3311 3575 545450084 545449821 2.070000e-82 316.0
11 TraesCS6A01G277200 chr6B 93.082 159 11 0 1331 1489 545466853 545466695 2.150000e-57 233.0
12 TraesCS6A01G277200 chr6B 82.857 70 11 1 1196 1264 46531578 46531509 1.070000e-05 62.1
13 TraesCS6A01G277200 chr1A 85.117 383 38 13 1231 1608 149129309 149129677 1.210000e-99 374.0
14 TraesCS6A01G277200 chr1A 86.806 288 32 3 1321 1608 160263974 160264255 2.070000e-82 316.0
15 TraesCS6A01G277200 chr1A 84.722 216 25 5 1742 1955 149129821 149130030 3.620000e-50 209.0
16 TraesCS6A01G277200 chr1A 85.714 189 22 3 1742 1930 160264399 160264582 1.010000e-45 195.0
17 TraesCS6A01G277200 chr2A 89.474 171 13 4 297 466 24442471 24442305 1.010000e-50 211.0
18 TraesCS6A01G277200 chr7A 89.474 171 10 5 299 467 257364518 257364354 3.620000e-50 209.0
19 TraesCS6A01G277200 chr7A 88.757 169 13 3 299 466 29267072 29266909 6.050000e-48 202.0
20 TraesCS6A01G277200 chr3A 89.349 169 14 4 299 466 730807478 730807643 3.620000e-50 209.0
21 TraesCS6A01G277200 chr3A 89.820 167 10 3 302 466 394382181 394382020 1.300000e-49 207.0
22 TraesCS6A01G277200 chr3A 75.152 165 35 6 1103 1264 439277768 439277929 4.950000e-09 73.1
23 TraesCS6A01G277200 chr5A 89.820 167 10 4 302 466 326431630 326431791 1.300000e-49 207.0
24 TraesCS6A01G277200 chr7B 90.000 160 12 3 304 460 733770577 733770735 1.680000e-48 204.0
25 TraesCS6A01G277200 chr7B 87.500 64 8 0 1202 1265 15072451 15072388 1.380000e-09 75.0
26 TraesCS6A01G277200 chr7B 82.500 80 14 0 1187 1266 437673053 437672974 1.780000e-08 71.3
27 TraesCS6A01G277200 chr2D 84.404 109 10 5 36 143 646432855 646432957 2.270000e-17 100.0
28 TraesCS6A01G277200 chr3D 76.970 165 32 6 1103 1264 325993971 325993810 4.920000e-14 89.8
29 TraesCS6A01G277200 chr7D 93.478 46 3 0 1858 1903 577746514 577746559 6.400000e-08 69.4
30 TraesCS6A01G277200 chrUn 84.286 70 10 1 1196 1264 95444570 95444501 2.300000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G277200 chr6A 504392171 504395745 3574 True 6602.000000 6602 100.000000 1 3575 1 chr6A.!!$R3 3574
1 TraesCS6A01G277200 chr6D 363452482 363455886 3404 True 1258.666667 1452 91.587000 490 3575 3 chr6D.!!$R1 3085
2 TraesCS6A01G277200 chr6B 545465212 545468693 3481 True 667.333333 1264 90.440667 915 2617 3 chr6B.!!$R4 1702
3 TraesCS6A01G277200 chr6B 545393871 545394371 500 True 329.000000 329 79.297000 1084 1574 1 chr6B.!!$R2 490
4 TraesCS6A01G277200 chr1A 149129309 149130030 721 False 291.500000 374 84.919500 1231 1955 2 chr1A.!!$F1 724
5 TraesCS6A01G277200 chr1A 160263974 160264582 608 False 255.500000 316 86.260000 1321 1930 2 chr1A.!!$F2 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.033796 ATGGAAGTGGTCATGGCCAG 60.034 55.0 22.11 3.43 39.53 4.85 F
275 276 0.036010 CTGCGATGAGGTTCTGGGTT 60.036 55.0 0.00 0.00 0.00 4.11 F
276 277 0.036388 TGCGATGAGGTTCTGGGTTC 60.036 55.0 0.00 0.00 0.00 3.62 F
304 305 0.037232 GTTCCAGCTAACTCCAGCGT 60.037 55.0 0.00 0.00 46.52 5.07 F
305 306 0.037326 TTCCAGCTAACTCCAGCGTG 60.037 55.0 0.00 0.00 46.52 5.34 F
998 1023 0.102481 CACGCTACGTAGCTCCCAAT 59.898 55.0 36.89 17.45 46.85 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 3599 0.111835 GCGAAACGTGAACTCGTGTC 60.112 55.000 8.82 8.82 43.38 3.67 R
1679 3601 0.299300 TTGCGAAACGTGAACTCGTG 59.701 50.000 10.15 0.00 43.38 4.35 R
1738 3709 1.153289 ATCTTGCGCTGCCCTGTAG 60.153 57.895 9.73 0.00 0.00 2.74 R
2250 4222 1.202651 CCGTATTTTCTGGGCGAGGAT 60.203 52.381 0.00 0.00 0.00 3.24 R
2321 4293 8.488651 AAACCATACATTAGTTAGAACCGAAG 57.511 34.615 0.00 0.00 0.00 3.79 R
2988 5347 0.535335 TGCGATGGGTAGAGGTCAAC 59.465 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.495572 AATTCTCTGAATCTAGAAAAAGTTCGT 57.504 29.630 0.00 0.00 38.90 3.85
46 47 8.522178 TTCTCTGAATCTAGAAAAAGTTCGTC 57.478 34.615 0.00 0.00 38.90 4.20
47 48 7.658261 TCTCTGAATCTAGAAAAAGTTCGTCA 58.342 34.615 0.00 0.00 38.90 4.35
48 49 8.307483 TCTCTGAATCTAGAAAAAGTTCGTCAT 58.693 33.333 0.00 0.00 38.90 3.06
49 50 9.574458 CTCTGAATCTAGAAAAAGTTCGTCATA 57.426 33.333 0.00 0.00 38.90 2.15
103 104 8.940768 AAAAAGTTCATCGAAATTGAAAAGGA 57.059 26.923 1.64 0.00 35.03 3.36
104 105 8.940768 AAAAGTTCATCGAAATTGAAAAGGAA 57.059 26.923 1.64 0.00 35.03 3.36
105 106 9.546428 AAAAGTTCATCGAAATTGAAAAGGAAT 57.454 25.926 1.64 0.00 35.03 3.01
106 107 9.546428 AAAGTTCATCGAAATTGAAAAGGAATT 57.454 25.926 1.64 0.00 35.03 2.17
107 108 8.748380 AGTTCATCGAAATTGAAAAGGAATTC 57.252 30.769 1.64 0.00 35.03 2.17
108 109 8.359642 AGTTCATCGAAATTGAAAAGGAATTCA 58.640 29.630 7.93 0.00 37.53 2.57
109 110 9.143631 GTTCATCGAAATTGAAAAGGAATTCAT 57.856 29.630 7.93 0.00 38.98 2.57
110 111 9.709495 TTCATCGAAATTGAAAAGGAATTCATT 57.291 25.926 7.93 3.18 38.98 2.57
111 112 9.142515 TCATCGAAATTGAAAAGGAATTCATTG 57.857 29.630 6.05 0.00 38.98 2.82
112 113 9.142515 CATCGAAATTGAAAAGGAATTCATTGA 57.857 29.630 6.05 0.00 38.98 2.57
113 114 9.880157 ATCGAAATTGAAAAGGAATTCATTGAT 57.120 25.926 6.05 0.00 38.98 2.57
114 115 9.709495 TCGAAATTGAAAAGGAATTCATTGATT 57.291 25.926 6.05 0.00 38.98 2.57
118 119 9.709495 AATTGAAAAGGAATTCATTGATTTCGA 57.291 25.926 6.05 7.07 38.98 3.71
119 120 9.709495 ATTGAAAAGGAATTCATTGATTTCGAA 57.291 25.926 6.05 0.00 38.98 3.71
120 121 9.539825 TTGAAAAGGAATTCATTGATTTCGAAA 57.460 25.926 13.91 13.91 38.98 3.46
121 122 9.539825 TGAAAAGGAATTCATTGATTTCGAAAA 57.460 25.926 15.66 0.00 34.50 2.29
145 146 9.500785 AAAAAGTTCACAGAATTTGAAAAAGGA 57.499 25.926 0.00 0.00 34.78 3.36
146 147 9.671279 AAAAGTTCACAGAATTTGAAAAAGGAT 57.329 25.926 0.00 0.00 34.78 3.24
147 148 8.652810 AAGTTCACAGAATTTGAAAAAGGATG 57.347 30.769 0.00 0.00 34.78 3.51
148 149 8.010733 AGTTCACAGAATTTGAAAAAGGATGA 57.989 30.769 0.00 0.00 34.78 2.92
149 150 8.139989 AGTTCACAGAATTTGAAAAAGGATGAG 58.860 33.333 0.00 0.00 34.78 2.90
150 151 6.985117 TCACAGAATTTGAAAAAGGATGAGG 58.015 36.000 0.00 0.00 0.00 3.86
151 152 6.777091 TCACAGAATTTGAAAAAGGATGAGGA 59.223 34.615 0.00 0.00 0.00 3.71
152 153 7.287466 TCACAGAATTTGAAAAAGGATGAGGAA 59.713 33.333 0.00 0.00 0.00 3.36
153 154 7.927629 CACAGAATTTGAAAAAGGATGAGGAAA 59.072 33.333 0.00 0.00 0.00 3.13
154 155 8.485392 ACAGAATTTGAAAAAGGATGAGGAAAA 58.515 29.630 0.00 0.00 0.00 2.29
155 156 9.328845 CAGAATTTGAAAAAGGATGAGGAAAAA 57.671 29.630 0.00 0.00 0.00 1.94
190 191 8.761575 AAAAACCGAACTGACGTAGATAATAA 57.238 30.769 0.00 0.00 0.00 1.40
191 192 7.982371 AAACCGAACTGACGTAGATAATAAG 57.018 36.000 0.00 0.00 0.00 1.73
192 193 6.690194 ACCGAACTGACGTAGATAATAAGT 57.310 37.500 0.00 0.00 0.00 2.24
193 194 7.792374 ACCGAACTGACGTAGATAATAAGTA 57.208 36.000 0.00 0.00 0.00 2.24
194 195 8.213518 ACCGAACTGACGTAGATAATAAGTAA 57.786 34.615 0.00 0.00 0.00 2.24
195 196 8.341173 ACCGAACTGACGTAGATAATAAGTAAG 58.659 37.037 0.00 0.00 0.00 2.34
196 197 8.341173 CCGAACTGACGTAGATAATAAGTAAGT 58.659 37.037 0.00 0.00 0.00 2.24
197 198 9.156156 CGAACTGACGTAGATAATAAGTAAGTG 57.844 37.037 0.00 0.00 0.00 3.16
198 199 9.448294 GAACTGACGTAGATAATAAGTAAGTGG 57.552 37.037 0.00 0.00 0.00 4.00
199 200 8.743085 ACTGACGTAGATAATAAGTAAGTGGA 57.257 34.615 0.00 0.00 0.00 4.02
200 201 8.619546 ACTGACGTAGATAATAAGTAAGTGGAC 58.380 37.037 0.00 0.00 0.00 4.02
201 202 7.934457 TGACGTAGATAATAAGTAAGTGGACC 58.066 38.462 0.00 0.00 0.00 4.46
202 203 6.963796 ACGTAGATAATAAGTAAGTGGACCG 58.036 40.000 0.00 0.00 0.00 4.79
203 204 6.767902 ACGTAGATAATAAGTAAGTGGACCGA 59.232 38.462 0.00 0.00 0.00 4.69
204 205 7.283127 ACGTAGATAATAAGTAAGTGGACCGAA 59.717 37.037 0.00 0.00 0.00 4.30
205 206 8.131100 CGTAGATAATAAGTAAGTGGACCGAAA 58.869 37.037 0.00 0.00 0.00 3.46
206 207 9.978044 GTAGATAATAAGTAAGTGGACCGAAAT 57.022 33.333 0.00 0.00 0.00 2.17
218 219 8.848474 AAGTGGACCGAAATATCTATTAATGG 57.152 34.615 0.00 0.00 0.00 3.16
219 220 8.202461 AGTGGACCGAAATATCTATTAATGGA 57.798 34.615 3.78 3.78 0.00 3.41
220 221 8.656806 AGTGGACCGAAATATCTATTAATGGAA 58.343 33.333 5.54 0.00 0.00 3.53
221 222 8.936864 GTGGACCGAAATATCTATTAATGGAAG 58.063 37.037 5.54 0.00 0.00 3.46
222 223 8.656806 TGGACCGAAATATCTATTAATGGAAGT 58.343 33.333 5.54 0.00 0.00 3.01
223 224 8.936864 GGACCGAAATATCTATTAATGGAAGTG 58.063 37.037 5.54 0.00 0.00 3.16
224 225 8.848474 ACCGAAATATCTATTAATGGAAGTGG 57.152 34.615 5.54 5.29 0.00 4.00
225 226 8.437575 ACCGAAATATCTATTAATGGAAGTGGT 58.562 33.333 5.54 5.84 0.00 4.16
226 227 8.936864 CCGAAATATCTATTAATGGAAGTGGTC 58.063 37.037 5.54 0.46 0.00 4.02
227 228 9.489084 CGAAATATCTATTAATGGAAGTGGTCA 57.511 33.333 5.54 0.00 0.00 4.02
230 231 9.745018 AATATCTATTAATGGAAGTGGTCATGG 57.255 33.333 5.54 0.00 0.00 3.66
231 232 5.376625 TCTATTAATGGAAGTGGTCATGGC 58.623 41.667 0.00 0.00 0.00 4.40
232 233 2.435372 TAATGGAAGTGGTCATGGCC 57.565 50.000 10.20 10.20 0.00 5.36
233 234 0.409092 AATGGAAGTGGTCATGGCCA 59.591 50.000 17.02 17.02 35.93 5.36
234 235 0.033796 ATGGAAGTGGTCATGGCCAG 60.034 55.000 22.11 3.43 39.53 4.85
235 236 1.379044 GGAAGTGGTCATGGCCAGG 60.379 63.158 22.11 12.23 39.53 4.45
236 237 1.380302 GAAGTGGTCATGGCCAGGT 59.620 57.895 22.11 10.78 39.53 4.00
237 238 0.962356 GAAGTGGTCATGGCCAGGTG 60.962 60.000 22.11 8.85 39.53 4.00
238 239 2.361610 GTGGTCATGGCCAGGTGG 60.362 66.667 22.11 3.61 39.53 4.61
248 249 3.708210 CCAGGTGGCTAGGACGAA 58.292 61.111 0.00 0.00 0.00 3.85
249 250 1.517832 CCAGGTGGCTAGGACGAAG 59.482 63.158 0.00 0.00 0.00 3.79
250 251 1.153549 CAGGTGGCTAGGACGAAGC 60.154 63.158 0.00 0.00 39.33 3.86
251 252 2.202756 GGTGGCTAGGACGAAGCG 60.203 66.667 0.00 0.00 41.03 4.68
252 253 2.886124 GTGGCTAGGACGAAGCGC 60.886 66.667 0.00 0.00 41.03 5.92
253 254 3.068691 TGGCTAGGACGAAGCGCT 61.069 61.111 2.64 2.64 41.03 5.92
254 255 1.751544 TGGCTAGGACGAAGCGCTA 60.752 57.895 12.05 0.00 41.03 4.26
255 256 1.008309 GGCTAGGACGAAGCGCTAG 60.008 63.158 12.05 11.25 41.03 3.42
256 257 1.659026 GCTAGGACGAAGCGCTAGC 60.659 63.158 12.05 10.84 37.96 3.42
268 269 4.844420 GCTAGCTGCGATGAGGTT 57.156 55.556 7.70 0.00 0.00 3.50
269 270 2.599216 GCTAGCTGCGATGAGGTTC 58.401 57.895 7.70 0.00 0.00 3.62
270 271 0.103937 GCTAGCTGCGATGAGGTTCT 59.896 55.000 7.70 0.00 0.00 3.01
271 272 1.850377 CTAGCTGCGATGAGGTTCTG 58.150 55.000 0.00 0.00 0.00 3.02
272 273 0.461548 TAGCTGCGATGAGGTTCTGG 59.538 55.000 0.00 0.00 0.00 3.86
273 274 1.817099 GCTGCGATGAGGTTCTGGG 60.817 63.158 0.00 0.00 0.00 4.45
274 275 1.599047 CTGCGATGAGGTTCTGGGT 59.401 57.895 0.00 0.00 0.00 4.51
275 276 0.036010 CTGCGATGAGGTTCTGGGTT 60.036 55.000 0.00 0.00 0.00 4.11
276 277 0.036388 TGCGATGAGGTTCTGGGTTC 60.036 55.000 0.00 0.00 0.00 3.62
277 278 1.084370 GCGATGAGGTTCTGGGTTCG 61.084 60.000 0.00 0.00 0.00 3.95
278 279 0.530744 CGATGAGGTTCTGGGTTCGA 59.469 55.000 0.00 0.00 0.00 3.71
279 280 1.137086 CGATGAGGTTCTGGGTTCGAT 59.863 52.381 0.00 0.00 0.00 3.59
280 281 2.361119 CGATGAGGTTCTGGGTTCGATA 59.639 50.000 0.00 0.00 0.00 2.92
281 282 3.181479 CGATGAGGTTCTGGGTTCGATAA 60.181 47.826 0.00 0.00 0.00 1.75
282 283 3.604875 TGAGGTTCTGGGTTCGATAAC 57.395 47.619 0.00 0.00 34.66 1.89
283 284 3.170717 TGAGGTTCTGGGTTCGATAACT 58.829 45.455 0.00 0.00 35.81 2.24
284 285 4.346730 TGAGGTTCTGGGTTCGATAACTA 58.653 43.478 0.00 0.00 35.81 2.24
285 286 4.401519 TGAGGTTCTGGGTTCGATAACTAG 59.598 45.833 0.00 0.00 35.81 2.57
286 287 4.351127 AGGTTCTGGGTTCGATAACTAGT 58.649 43.478 0.00 0.00 35.81 2.57
287 288 4.776308 AGGTTCTGGGTTCGATAACTAGTT 59.224 41.667 13.68 13.68 35.81 2.24
288 289 5.105432 AGGTTCTGGGTTCGATAACTAGTTC 60.105 44.000 12.39 0.00 35.81 3.01
289 290 4.996788 TCTGGGTTCGATAACTAGTTCC 57.003 45.455 12.39 5.80 35.81 3.62
290 291 4.346730 TCTGGGTTCGATAACTAGTTCCA 58.653 43.478 12.39 10.32 35.81 3.53
291 292 4.401519 TCTGGGTTCGATAACTAGTTCCAG 59.598 45.833 22.40 22.40 39.50 3.86
292 293 3.118884 TGGGTTCGATAACTAGTTCCAGC 60.119 47.826 12.39 0.00 35.81 4.85
293 294 3.132467 GGGTTCGATAACTAGTTCCAGCT 59.868 47.826 12.39 0.00 35.81 4.24
294 295 4.340381 GGGTTCGATAACTAGTTCCAGCTA 59.660 45.833 12.39 0.00 35.81 3.32
295 296 5.163478 GGGTTCGATAACTAGTTCCAGCTAA 60.163 44.000 12.39 0.00 35.81 3.09
296 297 5.747675 GGTTCGATAACTAGTTCCAGCTAAC 59.252 44.000 12.39 6.91 35.81 2.34
297 298 6.405619 GGTTCGATAACTAGTTCCAGCTAACT 60.406 42.308 12.39 7.06 36.66 2.24
298 299 6.374565 TCGATAACTAGTTCCAGCTAACTC 57.625 41.667 12.39 0.00 40.20 3.01
299 300 5.298777 TCGATAACTAGTTCCAGCTAACTCC 59.701 44.000 12.39 0.00 40.20 3.85
300 301 5.067413 CGATAACTAGTTCCAGCTAACTCCA 59.933 44.000 12.39 0.00 40.20 3.86
301 302 4.810191 AACTAGTTCCAGCTAACTCCAG 57.190 45.455 5.14 2.06 40.20 3.86
302 303 2.498078 ACTAGTTCCAGCTAACTCCAGC 59.502 50.000 5.14 0.00 40.20 4.85
303 304 0.247736 AGTTCCAGCTAACTCCAGCG 59.752 55.000 0.00 0.00 46.52 5.18
304 305 0.037232 GTTCCAGCTAACTCCAGCGT 60.037 55.000 0.00 0.00 46.52 5.07
305 306 0.037326 TTCCAGCTAACTCCAGCGTG 60.037 55.000 0.00 0.00 46.52 5.34
306 307 2.103042 CCAGCTAACTCCAGCGTGC 61.103 63.158 0.00 0.00 46.52 5.34
307 308 2.125912 AGCTAACTCCAGCGTGCG 60.126 61.111 0.00 0.00 46.52 5.34
308 309 3.854459 GCTAACTCCAGCGTGCGC 61.854 66.667 8.67 8.67 42.33 6.09
309 310 3.188786 CTAACTCCAGCGTGCGCC 61.189 66.667 13.21 0.00 43.17 6.53
310 311 4.752879 TAACTCCAGCGTGCGCCC 62.753 66.667 13.21 0.00 43.17 6.13
333 334 2.203195 TGCTCCCGCATATGTGGC 60.203 61.111 26.98 17.22 44.11 5.01
334 335 2.203195 GCTCCCGCATATGTGGCA 60.203 61.111 26.98 14.23 44.11 4.92
335 336 1.601759 GCTCCCGCATATGTGGCAT 60.602 57.895 26.98 0.00 44.11 4.40
336 337 1.859427 GCTCCCGCATATGTGGCATG 61.859 60.000 26.98 18.95 44.11 4.06
337 338 0.250424 CTCCCGCATATGTGGCATGA 60.250 55.000 26.98 18.25 44.11 3.07
338 339 0.401356 TCCCGCATATGTGGCATGAT 59.599 50.000 26.98 0.00 44.11 2.45
339 340 1.202915 TCCCGCATATGTGGCATGATT 60.203 47.619 26.98 0.00 44.11 2.57
340 341 1.614903 CCCGCATATGTGGCATGATTT 59.385 47.619 26.98 0.00 44.11 2.17
341 342 2.608506 CCCGCATATGTGGCATGATTTG 60.609 50.000 26.98 9.28 44.11 2.32
342 343 2.293955 CCGCATATGTGGCATGATTTGA 59.706 45.455 21.89 0.00 39.04 2.69
343 344 3.057104 CCGCATATGTGGCATGATTTGAT 60.057 43.478 21.89 0.00 39.04 2.57
344 345 4.552355 CGCATATGTGGCATGATTTGATT 58.448 39.130 8.46 0.00 0.00 2.57
345 346 4.384547 CGCATATGTGGCATGATTTGATTG 59.615 41.667 8.46 0.00 0.00 2.67
346 347 4.688879 GCATATGTGGCATGATTTGATTGG 59.311 41.667 4.29 0.00 0.00 3.16
347 348 5.510009 GCATATGTGGCATGATTTGATTGGA 60.510 40.000 4.29 0.00 0.00 3.53
348 349 6.517605 CATATGTGGCATGATTTGATTGGAA 58.482 36.000 0.00 0.00 0.00 3.53
349 350 4.191033 TGTGGCATGATTTGATTGGAAC 57.809 40.909 0.00 0.00 0.00 3.62
350 351 3.577415 TGTGGCATGATTTGATTGGAACA 59.423 39.130 0.00 0.00 0.00 3.18
364 365 3.512219 TGGAACAAAATAAGACCCGGT 57.488 42.857 0.00 0.00 31.92 5.28
365 366 3.414269 TGGAACAAAATAAGACCCGGTC 58.586 45.455 9.81 9.81 31.92 4.79
366 367 2.751259 GGAACAAAATAAGACCCGGTCC 59.249 50.000 14.32 0.00 32.18 4.46
367 368 2.502142 ACAAAATAAGACCCGGTCCC 57.498 50.000 14.32 0.00 32.18 4.46
368 369 1.706305 ACAAAATAAGACCCGGTCCCA 59.294 47.619 14.32 2.49 32.18 4.37
369 370 2.089201 CAAAATAAGACCCGGTCCCAC 58.911 52.381 14.32 0.00 32.18 4.61
370 371 0.622136 AAATAAGACCCGGTCCCACC 59.378 55.000 14.32 0.00 32.18 4.61
371 372 1.276859 AATAAGACCCGGTCCCACCC 61.277 60.000 14.32 0.00 33.75 4.61
372 373 2.190904 ATAAGACCCGGTCCCACCCT 62.191 60.000 14.32 0.00 33.75 4.34
373 374 2.405522 TAAGACCCGGTCCCACCCTT 62.406 60.000 14.32 3.49 33.75 3.95
374 375 2.284847 GACCCGGTCCCACCCTTA 60.285 66.667 6.25 0.00 33.75 2.69
375 376 1.919816 GACCCGGTCCCACCCTTAA 60.920 63.158 6.25 0.00 33.75 1.85
376 377 1.463804 ACCCGGTCCCACCCTTAAA 60.464 57.895 0.00 0.00 33.75 1.52
377 378 1.067173 ACCCGGTCCCACCCTTAAAA 61.067 55.000 0.00 0.00 33.75 1.52
378 379 0.333652 CCCGGTCCCACCCTTAAAAT 59.666 55.000 0.00 0.00 33.75 1.82
379 380 1.683938 CCCGGTCCCACCCTTAAAATC 60.684 57.143 0.00 0.00 33.75 2.17
380 381 1.004979 CCGGTCCCACCCTTAAAATCA 59.995 52.381 0.00 0.00 33.75 2.57
381 382 2.365582 CGGTCCCACCCTTAAAATCAG 58.634 52.381 0.00 0.00 33.75 2.90
382 383 2.026636 CGGTCCCACCCTTAAAATCAGA 60.027 50.000 0.00 0.00 33.75 3.27
383 384 3.621558 GGTCCCACCCTTAAAATCAGAG 58.378 50.000 0.00 0.00 30.04 3.35
384 385 3.265995 GGTCCCACCCTTAAAATCAGAGA 59.734 47.826 0.00 0.00 30.04 3.10
385 386 4.518249 GTCCCACCCTTAAAATCAGAGAG 58.482 47.826 0.00 0.00 0.00 3.20
386 387 3.523564 TCCCACCCTTAAAATCAGAGAGG 59.476 47.826 0.00 0.00 0.00 3.69
389 390 3.584733 CCCTTAAAATCAGAGAGGGGG 57.415 52.381 0.00 0.00 42.73 5.40
411 412 8.996651 GGGGGAGATGATTAGATTAAAAAGAA 57.003 34.615 0.00 0.00 0.00 2.52
412 413 9.421399 GGGGGAGATGATTAGATTAAAAAGAAA 57.579 33.333 0.00 0.00 0.00 2.52
436 437 6.442513 AAAAGAGAAAAAGACAGTCACAGG 57.557 37.500 2.66 0.00 0.00 4.00
437 438 5.359194 AAGAGAAAAAGACAGTCACAGGA 57.641 39.130 2.66 0.00 0.00 3.86
438 439 5.559148 AGAGAAAAAGACAGTCACAGGAT 57.441 39.130 2.66 0.00 0.00 3.24
439 440 5.303971 AGAGAAAAAGACAGTCACAGGATG 58.696 41.667 2.66 0.00 46.00 3.51
440 441 4.392940 AGAAAAAGACAGTCACAGGATGG 58.607 43.478 2.66 0.00 43.62 3.51
441 442 4.103153 AGAAAAAGACAGTCACAGGATGGA 59.897 41.667 2.66 0.00 43.62 3.41
442 443 3.692257 AAAGACAGTCACAGGATGGAG 57.308 47.619 2.66 0.00 43.62 3.86
443 444 2.317371 AGACAGTCACAGGATGGAGT 57.683 50.000 2.66 0.00 43.62 3.85
444 445 1.898472 AGACAGTCACAGGATGGAGTG 59.102 52.381 2.66 0.00 43.62 3.51
445 446 0.979665 ACAGTCACAGGATGGAGTGG 59.020 55.000 0.00 0.00 43.62 4.00
446 447 0.251354 CAGTCACAGGATGGAGTGGG 59.749 60.000 0.00 0.00 43.62 4.61
447 448 0.117140 AGTCACAGGATGGAGTGGGA 59.883 55.000 0.00 0.00 43.62 4.37
448 449 0.539051 GTCACAGGATGGAGTGGGAG 59.461 60.000 0.00 0.00 43.62 4.30
449 450 1.222936 CACAGGATGGAGTGGGAGC 59.777 63.158 0.00 0.00 43.62 4.70
450 451 1.229625 ACAGGATGGAGTGGGAGCA 60.230 57.895 0.00 0.00 43.62 4.26
451 452 1.222936 CAGGATGGAGTGGGAGCAC 59.777 63.158 0.00 0.00 0.00 4.40
452 453 1.229625 AGGATGGAGTGGGAGCACA 60.230 57.895 0.00 0.00 0.00 4.57
453 454 1.222936 GGATGGAGTGGGAGCACAG 59.777 63.158 0.00 0.00 0.00 3.66
454 455 1.267574 GGATGGAGTGGGAGCACAGA 61.268 60.000 0.00 0.00 0.00 3.41
455 456 0.835941 GATGGAGTGGGAGCACAGAT 59.164 55.000 0.00 0.00 0.00 2.90
456 457 0.545171 ATGGAGTGGGAGCACAGATG 59.455 55.000 0.00 0.00 0.00 2.90
457 458 1.222936 GGAGTGGGAGCACAGATGG 59.777 63.158 0.00 0.00 0.00 3.51
458 459 1.222936 GAGTGGGAGCACAGATGGG 59.777 63.158 0.00 0.00 0.00 4.00
459 460 1.229625 AGTGGGAGCACAGATGGGA 60.230 57.895 0.00 0.00 0.00 4.37
460 461 0.842030 AGTGGGAGCACAGATGGGAA 60.842 55.000 0.00 0.00 0.00 3.97
461 462 0.678048 GTGGGAGCACAGATGGGAAC 60.678 60.000 0.00 0.00 0.00 3.62
474 475 1.285280 TGGGAACATGGATCCTTCGT 58.715 50.000 14.23 4.34 37.14 3.85
475 476 2.473070 TGGGAACATGGATCCTTCGTA 58.527 47.619 14.23 0.00 37.14 3.43
476 477 2.434336 TGGGAACATGGATCCTTCGTAG 59.566 50.000 14.23 0.00 37.14 3.51
477 478 2.698797 GGGAACATGGATCCTTCGTAGA 59.301 50.000 14.23 0.00 37.14 2.59
478 479 3.243907 GGGAACATGGATCCTTCGTAGAG 60.244 52.174 14.23 0.00 37.14 2.43
479 480 3.385111 GGAACATGGATCCTTCGTAGAGT 59.615 47.826 14.23 0.00 38.43 3.24
480 481 4.363999 GAACATGGATCCTTCGTAGAGTG 58.636 47.826 14.23 1.01 38.43 3.51
481 482 2.695666 ACATGGATCCTTCGTAGAGTGG 59.304 50.000 14.23 0.00 38.43 4.00
482 483 1.776662 TGGATCCTTCGTAGAGTGGG 58.223 55.000 14.23 0.00 38.43 4.61
483 484 0.389757 GGATCCTTCGTAGAGTGGGC 59.610 60.000 3.84 0.00 38.43 5.36
484 485 1.404843 GATCCTTCGTAGAGTGGGCT 58.595 55.000 0.00 0.00 38.43 5.19
485 486 1.067821 GATCCTTCGTAGAGTGGGCTG 59.932 57.143 0.00 0.00 38.43 4.85
486 487 0.970937 TCCTTCGTAGAGTGGGCTGG 60.971 60.000 0.00 0.00 38.43 4.85
487 488 1.517832 CTTCGTAGAGTGGGCTGGG 59.482 63.158 0.00 0.00 38.43 4.45
488 489 2.579684 CTTCGTAGAGTGGGCTGGGC 62.580 65.000 0.00 0.00 38.43 5.36
503 504 0.621571 TGGGCTGGCCAGATAAGACT 60.622 55.000 37.21 0.00 37.98 3.24
516 517 6.818644 GCCAGATAAGACTAGTCAAAATGTCA 59.181 38.462 24.44 1.11 32.41 3.58
518 519 8.660373 CCAGATAAGACTAGTCAAAATGTCAAC 58.340 37.037 24.44 5.04 32.41 3.18
525 526 0.671251 TCAAAATGTCAACGTGGCCC 59.329 50.000 0.00 0.00 0.00 5.80
526 527 0.673437 CAAAATGTCAACGTGGCCCT 59.327 50.000 0.00 0.00 0.00 5.19
579 580 4.395959 GGAGACCCATACGTCATAAACA 57.604 45.455 0.00 0.00 35.07 2.83
591 592 5.992729 ACGTCATAAACATGTTTAAAGCGT 58.007 33.333 29.87 29.87 38.38 5.07
596 597 9.601971 GTCATAAACATGTTTAAAGCGTTCTTA 57.398 29.630 29.44 9.37 38.38 2.10
603 604 4.389687 TGTTTAAAGCGTTCTTATCCGTCC 59.610 41.667 0.00 0.00 31.02 4.79
606 607 4.395959 AAAGCGTTCTTATCCGTCCATA 57.604 40.909 0.00 0.00 31.02 2.74
608 609 3.978687 AGCGTTCTTATCCGTCCATAAG 58.021 45.455 0.00 0.00 37.60 1.73
609 610 3.383825 AGCGTTCTTATCCGTCCATAAGT 59.616 43.478 6.12 0.00 37.54 2.24
613 614 4.931661 TCTTATCCGTCCATAAGTGGTC 57.068 45.455 6.12 0.00 46.16 4.02
617 618 3.090210 TCCGTCCATAAGTGGTCTACA 57.910 47.619 0.00 0.00 46.16 2.74
698 703 2.267961 GCAAACCCGTCCCTCGAT 59.732 61.111 0.00 0.00 42.86 3.59
709 714 1.078426 CCCTCGATGTGGTGGGTTC 60.078 63.158 0.00 0.00 35.13 3.62
713 718 2.040544 CGATGTGGTGGGTTCCTGC 61.041 63.158 0.00 0.00 0.00 4.85
726 731 3.481453 GGTTCCTGCAATTCCTAGATCC 58.519 50.000 0.00 0.00 0.00 3.36
785 790 1.090052 GCGCTTTGGCCTACGAGAAT 61.090 55.000 3.32 0.00 34.44 2.40
793 798 0.601558 GCCTACGAGAATCCGCCATA 59.398 55.000 0.00 0.00 0.00 2.74
818 823 1.583967 CTCTTGCTACGCTCGTCGG 60.584 63.158 0.00 0.00 43.86 4.79
869 874 4.857037 GCAATTAAAAACTAACAGAGGCCG 59.143 41.667 0.00 0.00 0.00 6.13
875 880 1.258445 ACTAACAGAGGCCGGTGGAG 61.258 60.000 1.90 10.09 0.00 3.86
913 930 0.249031 TCGCCATCGTGCTATCACAG 60.249 55.000 0.00 0.00 43.28 3.66
926 943 3.123621 GCTATCACAGGAGTCAAAACACG 59.876 47.826 0.00 0.00 0.00 4.49
933 950 3.001330 CAGGAGTCAAAACACGAAGACAC 59.999 47.826 0.00 0.00 33.56 3.67
939 956 1.485032 AAACACGAAGACACCGACGC 61.485 55.000 0.00 0.00 0.00 5.19
996 1021 3.060020 GCACGCTACGTAGCTCCCA 62.060 63.158 36.89 0.00 46.85 4.37
997 1022 1.509463 CACGCTACGTAGCTCCCAA 59.491 57.895 36.89 0.00 46.85 4.12
998 1023 0.102481 CACGCTACGTAGCTCCCAAT 59.898 55.000 36.89 17.45 46.85 3.16
1010 1035 1.523758 CTCCCAATAATGGCGCTACC 58.476 55.000 7.64 0.00 46.09 3.18
1048 1076 3.839432 CCCTTCTCCTCGTCGCCC 61.839 72.222 0.00 0.00 0.00 6.13
1119 1147 2.430921 CGCGTCTTCAGCTTCGGT 60.431 61.111 0.00 0.00 0.00 4.69
1311 1358 2.351060 CGTTCGTTGACCTGCACTACTA 60.351 50.000 0.00 0.00 0.00 1.82
1312 1359 3.672511 CGTTCGTTGACCTGCACTACTAT 60.673 47.826 0.00 0.00 0.00 2.12
1319 1369 6.017357 CGTTGACCTGCACTACTATACTGATA 60.017 42.308 0.00 0.00 0.00 2.15
1507 2974 2.885644 CATCCTTCGTGCCGGTCG 60.886 66.667 1.90 9.19 0.00 4.79
1563 3030 1.181741 TGCAGCTTCTCGACTCCACT 61.182 55.000 0.00 0.00 0.00 4.00
1585 3503 3.051606 GCAACGGTATGCAATGTACTG 57.948 47.619 0.00 0.00 45.70 2.74
1586 3504 2.418628 GCAACGGTATGCAATGTACTGT 59.581 45.455 4.86 4.86 45.70 3.55
1587 3505 3.619483 GCAACGGTATGCAATGTACTGTA 59.381 43.478 10.15 0.00 45.70 2.74
1588 3506 4.493545 GCAACGGTATGCAATGTACTGTAC 60.494 45.833 10.98 10.98 45.70 2.90
1601 3519 2.743636 ACTGTACATCACGGTCCTTG 57.256 50.000 0.00 0.00 43.65 3.61
1602 3520 2.244695 ACTGTACATCACGGTCCTTGA 58.755 47.619 0.00 0.00 43.65 3.02
1603 3521 2.832129 ACTGTACATCACGGTCCTTGAT 59.168 45.455 5.03 5.03 43.65 2.57
1604 3522 3.260884 ACTGTACATCACGGTCCTTGATT 59.739 43.478 8.12 3.85 43.65 2.57
1605 3523 3.857052 TGTACATCACGGTCCTTGATTC 58.143 45.455 8.12 3.75 30.98 2.52
1606 3524 3.259625 TGTACATCACGGTCCTTGATTCA 59.740 43.478 8.12 5.99 30.98 2.57
1607 3525 3.634397 ACATCACGGTCCTTGATTCAT 57.366 42.857 8.12 0.00 30.98 2.57
1608 3526 3.273434 ACATCACGGTCCTTGATTCATG 58.727 45.455 8.12 2.08 30.98 3.07
1609 3527 3.055167 ACATCACGGTCCTTGATTCATGA 60.055 43.478 8.12 0.00 30.98 3.07
1610 3528 3.251479 TCACGGTCCTTGATTCATGAG 57.749 47.619 0.00 0.00 0.00 2.90
1611 3529 2.831526 TCACGGTCCTTGATTCATGAGA 59.168 45.455 0.00 0.00 0.00 3.27
1612 3530 3.452264 TCACGGTCCTTGATTCATGAGAT 59.548 43.478 0.00 0.00 0.00 2.75
1613 3531 3.806521 CACGGTCCTTGATTCATGAGATC 59.193 47.826 0.00 3.48 0.00 2.75
1614 3532 3.181461 ACGGTCCTTGATTCATGAGATCC 60.181 47.826 12.43 3.64 0.00 3.36
1615 3533 3.070734 CGGTCCTTGATTCATGAGATCCT 59.929 47.826 12.43 0.00 0.00 3.24
1616 3534 4.444022 CGGTCCTTGATTCATGAGATCCTT 60.444 45.833 12.43 0.00 0.00 3.36
1617 3535 5.221521 CGGTCCTTGATTCATGAGATCCTTA 60.222 44.000 12.43 0.00 0.00 2.69
1618 3536 6.519721 CGGTCCTTGATTCATGAGATCCTTAT 60.520 42.308 12.43 0.00 0.00 1.73
1619 3537 7.230027 GGTCCTTGATTCATGAGATCCTTATT 58.770 38.462 12.43 0.00 0.00 1.40
1620 3538 7.390162 GGTCCTTGATTCATGAGATCCTTATTC 59.610 40.741 12.43 0.00 0.00 1.75
1621 3539 7.117523 GTCCTTGATTCATGAGATCCTTATTCG 59.882 40.741 12.43 0.00 0.00 3.34
1622 3540 6.128336 CCTTGATTCATGAGATCCTTATTCGC 60.128 42.308 12.43 0.00 0.00 4.70
1623 3541 5.857268 TGATTCATGAGATCCTTATTCGCA 58.143 37.500 12.43 0.00 0.00 5.10
1624 3542 6.290605 TGATTCATGAGATCCTTATTCGCAA 58.709 36.000 12.43 0.00 0.00 4.85
1625 3543 6.767423 TGATTCATGAGATCCTTATTCGCAAA 59.233 34.615 12.43 0.00 0.00 3.68
1626 3544 7.282901 TGATTCATGAGATCCTTATTCGCAAAA 59.717 33.333 12.43 0.00 0.00 2.44
1627 3545 7.389803 TTCATGAGATCCTTATTCGCAAAAA 57.610 32.000 0.00 0.00 0.00 1.94
1656 3578 6.243900 AGATTTATGAGATCCGCCAATTCAT 58.756 36.000 0.00 0.00 33.44 2.57
1660 3582 7.615582 TTATGAGATCCGCCAATTCATATTC 57.384 36.000 0.00 0.00 32.56 1.75
1663 3585 6.401394 TGAGATCCGCCAATTCATATTCTAG 58.599 40.000 0.00 0.00 0.00 2.43
1675 3597 7.776618 ATTCATATTCTAGTACGGTCCATGA 57.223 36.000 0.00 0.00 0.00 3.07
1676 3598 7.776618 TTCATATTCTAGTACGGTCCATGAT 57.223 36.000 0.00 0.00 0.00 2.45
1677 3599 7.158099 TCATATTCTAGTACGGTCCATGATG 57.842 40.000 0.00 0.00 0.00 3.07
1679 3601 4.913335 TTCTAGTACGGTCCATGATGAC 57.087 45.455 0.00 0.00 34.42 3.06
1738 3709 1.003696 GATTAGGGGAGGGCTGTATGC 59.996 57.143 0.00 0.00 41.94 3.14
1925 3896 4.452733 CTCCGGCCGGTCAACTCC 62.453 72.222 41.57 0.00 36.47 3.85
1963 3935 9.533253 CCACCCTAGCTAATTAATTTTCAATTG 57.467 33.333 5.91 0.00 0.00 2.32
1964 3936 9.034544 CACCCTAGCTAATTAATTTTCAATTGC 57.965 33.333 5.91 0.00 0.00 3.56
1979 3951 1.059098 ATTGCACCTCACCTGTCTCA 58.941 50.000 0.00 0.00 0.00 3.27
1988 3960 4.404073 ACCTCACCTGTCTCATTCTATGAC 59.596 45.833 0.00 0.00 35.06 3.06
2223 4195 2.585247 GCCATCCACTACGCCGAC 60.585 66.667 0.00 0.00 0.00 4.79
2250 4222 3.829044 CCCATCACCGCGGTCGTA 61.829 66.667 31.80 17.83 0.00 3.43
2334 4306 1.134788 CCATCGGCTTCGGTTCTAACT 60.135 52.381 0.00 0.00 34.13 2.24
2348 4321 8.483307 TCGGTTCTAACTAATGTATGGTTTTC 57.517 34.615 0.00 0.00 0.00 2.29
2361 4334 2.088178 GTTTTCCTTGGCGCGCATG 61.088 57.895 34.42 20.77 0.00 4.06
2394 4370 2.202878 GCAGGCTTCGGCGACATA 60.203 61.111 10.16 0.00 42.91 2.29
2540 4516 2.772077 TACACGGAGGCTGCAAATAA 57.228 45.000 6.86 0.00 0.00 1.40
2568 4544 2.367202 ACACGCCATACTGAGGGGG 61.367 63.158 0.00 0.00 44.59 5.40
2596 4572 2.685388 TGAGCCATCAACGAACAAAACA 59.315 40.909 0.00 0.00 30.61 2.83
2601 4577 4.259770 GCCATCAACGAACAAAACACAAAG 60.260 41.667 0.00 0.00 0.00 2.77
2614 4590 1.064017 ACACAAAGAAGGCCTGGACAA 60.064 47.619 5.69 0.00 0.00 3.18
2618 4594 1.692411 AAGAAGGCCTGGACAACAAC 58.308 50.000 5.69 0.00 0.00 3.32
2619 4595 0.535102 AGAAGGCCTGGACAACAACG 60.535 55.000 5.69 0.00 0.00 4.10
2620 4596 1.515521 GAAGGCCTGGACAACAACGG 61.516 60.000 5.69 0.00 0.00 4.44
2621 4597 2.976494 AAGGCCTGGACAACAACGGG 62.976 60.000 5.69 0.00 36.18 5.28
2745 4752 9.713713 AAAAGTTTAAGGTTTGTGTAATTGTGT 57.286 25.926 0.00 0.00 0.00 3.72
2746 4753 9.713713 AAAGTTTAAGGTTTGTGTAATTGTGTT 57.286 25.926 0.00 0.00 0.00 3.32
2747 4754 8.696410 AGTTTAAGGTTTGTGTAATTGTGTTG 57.304 30.769 0.00 0.00 0.00 3.33
2748 4755 7.276878 AGTTTAAGGTTTGTGTAATTGTGTTGC 59.723 33.333 0.00 0.00 0.00 4.17
2759 4766 7.096551 GTGTAATTGTGTTGCAATCCCTAAAT 58.903 34.615 0.59 0.00 46.29 1.40
2760 4767 7.063308 GTGTAATTGTGTTGCAATCCCTAAATG 59.937 37.037 0.59 0.00 46.29 2.32
2761 4768 5.743636 ATTGTGTTGCAATCCCTAAATGT 57.256 34.783 0.59 0.00 43.86 2.71
2765 4772 5.092781 GTGTTGCAATCCCTAAATGTTACG 58.907 41.667 0.59 0.00 0.00 3.18
2766 4773 5.004448 TGTTGCAATCCCTAAATGTTACGA 58.996 37.500 0.59 0.00 0.00 3.43
2774 4781 4.761227 TCCCTAAATGTTACGACCCAAAAC 59.239 41.667 0.00 0.00 0.00 2.43
2781 4788 5.692613 TGTTACGACCCAAAACATAAAGG 57.307 39.130 0.00 0.00 0.00 3.11
2789 4796 4.044191 ACCCAAAACATAAAGGCCTACTCT 59.956 41.667 5.16 0.00 0.00 3.24
2792 4799 4.820894 AAACATAAAGGCCTACTCTCGT 57.179 40.909 5.16 0.00 0.00 4.18
2793 4800 3.802948 ACATAAAGGCCTACTCTCGTG 57.197 47.619 5.16 0.96 0.00 4.35
2794 4801 2.431057 ACATAAAGGCCTACTCTCGTGG 59.569 50.000 5.16 0.00 0.00 4.94
2800 4807 0.528684 GCCTACTCTCGTGGCATGAC 60.529 60.000 5.03 0.00 45.46 3.06
2811 4818 2.023741 GCATGACGGAATGCGCTG 59.976 61.111 9.73 0.00 43.22 5.18
2841 4848 2.625695 TAGCGGTTATGTTAAGGCCC 57.374 50.000 0.00 0.00 0.00 5.80
2842 4849 0.916809 AGCGGTTATGTTAAGGCCCT 59.083 50.000 0.00 0.00 0.00 5.19
2848 4855 5.374071 CGGTTATGTTAAGGCCCTCTTATT 58.626 41.667 0.00 0.00 37.74 1.40
2856 4863 1.376609 GGCCCTCTTATTGCACACCG 61.377 60.000 0.00 0.00 0.00 4.94
2861 4868 3.074412 CCTCTTATTGCACACCGAAACT 58.926 45.455 0.00 0.00 0.00 2.66
2862 4869 3.120199 CCTCTTATTGCACACCGAAACTG 60.120 47.826 0.00 0.00 0.00 3.16
2865 4872 5.242434 TCTTATTGCACACCGAAACTGTAT 58.758 37.500 0.00 0.00 0.00 2.29
2887 5207 3.055891 TGTGATGACGTGAACCATCTCAT 60.056 43.478 14.01 0.00 37.96 2.90
2888 5208 3.308053 GTGATGACGTGAACCATCTCATG 59.692 47.826 14.01 0.00 39.75 3.07
2889 5209 1.725641 TGACGTGAACCATCTCATGC 58.274 50.000 0.00 0.00 36.03 4.06
2899 5219 6.258507 GTGAACCATCTCATGCAAAACTTTTT 59.741 34.615 0.00 0.00 0.00 1.94
2941 5300 7.781548 AGTTACATCTAAAAAGTCGTGTGTT 57.218 32.000 0.00 0.00 0.00 3.32
2951 5310 4.903638 AAGTCGTGTGTTATGATGTTCG 57.096 40.909 0.00 0.00 0.00 3.95
2954 5313 3.060602 TCGTGTGTTATGATGTTCGCAA 58.939 40.909 0.00 0.00 0.00 4.85
2988 5347 2.119457 GAAAGTTTTTCAGGCTGCACG 58.881 47.619 10.34 0.00 0.00 5.34
3002 5361 1.116536 TGCACGTTGACCTCTACCCA 61.117 55.000 0.00 0.00 0.00 4.51
3004 5363 1.739371 GCACGTTGACCTCTACCCATC 60.739 57.143 0.00 0.00 0.00 3.51
3017 5376 5.707298 CCTCTACCCATCGCATGAAATATTT 59.293 40.000 0.00 0.00 0.00 1.40
3137 5496 6.549736 TGATAGAACTACATAGTGCTAGGCAA 59.450 38.462 11.59 0.00 45.22 4.52
3140 5499 2.758979 ACTACATAGTGCTAGGCAACGT 59.241 45.455 0.00 0.00 41.47 3.99
3142 5501 1.134788 ACATAGTGCTAGGCAACGTCC 60.135 52.381 0.00 0.00 41.47 4.79
3145 5504 1.448013 GTGCTAGGCAACGTCCTCC 60.448 63.158 0.00 0.00 41.47 4.30
3146 5505 1.911269 TGCTAGGCAACGTCCTCCA 60.911 57.895 0.00 0.00 46.39 3.86
3150 5509 1.002087 CTAGGCAACGTCCTCCACTTT 59.998 52.381 0.00 0.00 46.39 2.66
3151 5510 0.535102 AGGCAACGTCCTCCACTTTG 60.535 55.000 0.00 0.00 46.39 2.77
3164 5523 2.561419 TCCACTTTGACGCTAGCTAAGT 59.439 45.455 13.93 13.13 0.00 2.24
3172 5531 2.009755 GCTAGCTAAGTACGCGCGG 61.010 63.158 35.22 16.19 0.00 6.46
3174 5533 2.056481 CTAGCTAAGTACGCGCGGGT 62.056 60.000 35.22 31.66 0.00 5.28
3194 5553 1.621317 TGACATCCAAGCGGTCAACTA 59.379 47.619 0.00 0.00 38.50 2.24
3215 5574 1.662876 CCGCGTCCACTGTTTCAATTG 60.663 52.381 4.92 0.00 0.00 2.32
3221 5580 4.376008 CGTCCACTGTTTCAATTGACTACG 60.376 45.833 7.89 8.43 0.00 3.51
3228 5587 2.779755 TCAATTGACTACGCCATGGT 57.220 45.000 14.67 0.00 0.00 3.55
3277 5636 2.442212 TGCAATGAAATGGTGTGCAG 57.558 45.000 0.00 0.00 40.14 4.41
3278 5637 1.073177 GCAATGAAATGGTGTGCAGC 58.927 50.000 0.00 0.00 35.28 5.25
3284 5643 2.786512 AAATGGTGTGCAGCGGGGAT 62.787 55.000 0.00 0.00 0.00 3.85
3285 5644 4.720902 TGGTGTGCAGCGGGGATG 62.721 66.667 0.00 0.00 0.00 3.51
3306 5665 2.203552 TCGGGCCCAACAATTGCA 60.204 55.556 24.92 0.00 0.00 4.08
3308 5667 2.048316 GGGCCCAACAATTGCACG 60.048 61.111 19.95 0.00 0.00 5.34
3318 5677 0.381801 CAATTGCACGGGCCTCATAC 59.618 55.000 7.46 0.00 40.13 2.39
3324 5683 0.311165 CACGGGCCTCATACTCTACG 59.689 60.000 0.84 0.00 0.00 3.51
3325 5684 0.822532 ACGGGCCTCATACTCTACGG 60.823 60.000 0.84 0.00 0.00 4.02
3327 5686 1.887088 CGGGCCTCATACTCTACGGAT 60.887 57.143 0.84 0.00 0.00 4.18
3329 5688 2.231721 GGGCCTCATACTCTACGGATTC 59.768 54.545 0.84 0.00 0.00 2.52
3342 5701 1.548719 ACGGATTCAATGTCACGAGGA 59.451 47.619 0.00 0.00 0.00 3.71
3375 5734 2.338809 ACTCAACCAACTCATCCAGGA 58.661 47.619 0.00 0.00 0.00 3.86
3378 5737 2.978978 TCAACCAACTCATCCAGGAAGA 59.021 45.455 0.00 0.00 0.00 2.87
3383 5742 3.193263 CAACTCATCCAGGAAGACATCG 58.807 50.000 0.00 0.00 0.00 3.84
3394 5753 3.463585 GACATCGTACCGGCCCCA 61.464 66.667 0.00 0.00 0.00 4.96
3433 5792 0.684479 TCCAGAGATGGAGGGTCGTG 60.684 60.000 0.00 0.00 33.38 4.35
3470 5829 0.809241 CGAAGAGTCATGGCTCAGGC 60.809 60.000 28.19 15.46 37.94 4.85
3485 5844 1.534235 AGGCATAGTCCCTAGGGCG 60.534 63.158 24.42 9.55 45.54 6.13
3512 5871 4.008933 GGAGGCACGTGCTCTGGT 62.009 66.667 36.84 18.23 41.70 4.00
3522 5881 1.228769 TGCTCTGGTACGACTGGGT 60.229 57.895 0.00 0.00 0.00 4.51
3546 5905 1.153086 GCAGGCTGTAGGGTGATGG 60.153 63.158 17.16 0.00 0.00 3.51
3565 5924 2.801631 GGGCAGGCTCTAGCACGAT 61.802 63.158 4.07 0.00 44.36 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.495572 ACGAACTTTTTCTAGATTCAGAGAATT 57.504 29.630 0.00 0.00 31.91 2.17
20 21 9.145865 GACGAACTTTTTCTAGATTCAGAGAAT 57.854 33.333 0.00 0.00 31.91 2.40
21 22 8.141909 TGACGAACTTTTTCTAGATTCAGAGAA 58.858 33.333 0.00 0.00 0.00 2.87
22 23 7.658261 TGACGAACTTTTTCTAGATTCAGAGA 58.342 34.615 0.00 0.00 0.00 3.10
23 24 7.875316 TGACGAACTTTTTCTAGATTCAGAG 57.125 36.000 0.00 0.00 0.00 3.35
78 79 8.940768 TCCTTTTCAATTTCGATGAACTTTTT 57.059 26.923 0.00 0.00 36.57 1.94
79 80 8.940768 TTCCTTTTCAATTTCGATGAACTTTT 57.059 26.923 0.00 0.00 36.57 2.27
80 81 9.546428 AATTCCTTTTCAATTTCGATGAACTTT 57.454 25.926 0.00 0.00 36.57 2.66
81 82 9.196552 GAATTCCTTTTCAATTTCGATGAACTT 57.803 29.630 0.00 0.00 36.57 2.66
82 83 8.359642 TGAATTCCTTTTCAATTTCGATGAACT 58.640 29.630 2.27 0.00 36.57 3.01
83 84 8.519492 TGAATTCCTTTTCAATTTCGATGAAC 57.481 30.769 2.27 0.00 36.57 3.18
84 85 9.709495 AATGAATTCCTTTTCAATTTCGATGAA 57.291 25.926 2.27 0.00 38.98 2.57
85 86 9.142515 CAATGAATTCCTTTTCAATTTCGATGA 57.857 29.630 2.27 0.00 38.98 2.92
86 87 9.142515 TCAATGAATTCCTTTTCAATTTCGATG 57.857 29.630 2.27 0.00 38.98 3.84
87 88 9.880157 ATCAATGAATTCCTTTTCAATTTCGAT 57.120 25.926 2.27 0.00 38.98 3.59
88 89 9.709495 AATCAATGAATTCCTTTTCAATTTCGA 57.291 25.926 2.27 0.00 38.98 3.71
92 93 9.709495 TCGAAATCAATGAATTCCTTTTCAATT 57.291 25.926 5.56 0.00 38.98 2.32
93 94 9.709495 TTCGAAATCAATGAATTCCTTTTCAAT 57.291 25.926 5.56 0.00 38.98 2.57
94 95 9.539825 TTTCGAAATCAATGAATTCCTTTTCAA 57.460 25.926 6.47 0.00 38.98 2.69
95 96 9.539825 TTTTCGAAATCAATGAATTCCTTTTCA 57.460 25.926 12.12 0.00 39.77 2.69
119 120 9.500785 TCCTTTTTCAAATTCTGTGAACTTTTT 57.499 25.926 0.00 0.00 34.78 1.94
120 121 9.671279 ATCCTTTTTCAAATTCTGTGAACTTTT 57.329 25.926 0.00 0.00 34.78 2.27
121 122 9.101655 CATCCTTTTTCAAATTCTGTGAACTTT 57.898 29.630 0.00 0.00 34.78 2.66
122 123 8.477256 TCATCCTTTTTCAAATTCTGTGAACTT 58.523 29.630 0.00 0.00 34.78 2.66
123 124 8.010733 TCATCCTTTTTCAAATTCTGTGAACT 57.989 30.769 0.00 0.00 34.78 3.01
124 125 7.383300 CCTCATCCTTTTTCAAATTCTGTGAAC 59.617 37.037 0.00 0.00 34.78 3.18
125 126 7.287466 TCCTCATCCTTTTTCAAATTCTGTGAA 59.713 33.333 0.00 0.00 33.21 3.18
126 127 6.777091 TCCTCATCCTTTTTCAAATTCTGTGA 59.223 34.615 0.00 0.00 0.00 3.58
127 128 6.985117 TCCTCATCCTTTTTCAAATTCTGTG 58.015 36.000 0.00 0.00 0.00 3.66
128 129 7.601705 TTCCTCATCCTTTTTCAAATTCTGT 57.398 32.000 0.00 0.00 0.00 3.41
129 130 8.891671 TTTTCCTCATCCTTTTTCAAATTCTG 57.108 30.769 0.00 0.00 0.00 3.02
165 166 8.761575 TTATTATCTACGTCAGTTCGGTTTTT 57.238 30.769 0.00 0.00 34.94 1.94
166 167 8.031277 ACTTATTATCTACGTCAGTTCGGTTTT 58.969 33.333 0.00 0.00 34.94 2.43
167 168 7.542025 ACTTATTATCTACGTCAGTTCGGTTT 58.458 34.615 0.00 0.00 34.94 3.27
168 169 7.093322 ACTTATTATCTACGTCAGTTCGGTT 57.907 36.000 0.00 0.00 34.94 4.44
169 170 6.690194 ACTTATTATCTACGTCAGTTCGGT 57.310 37.500 0.00 0.00 34.94 4.69
170 171 8.341173 ACTTACTTATTATCTACGTCAGTTCGG 58.659 37.037 0.00 0.00 34.94 4.30
171 172 9.156156 CACTTACTTATTATCTACGTCAGTTCG 57.844 37.037 0.00 0.00 0.00 3.95
172 173 9.448294 CCACTTACTTATTATCTACGTCAGTTC 57.552 37.037 0.00 0.00 0.00 3.01
173 174 9.182214 TCCACTTACTTATTATCTACGTCAGTT 57.818 33.333 0.00 0.00 0.00 3.16
174 175 8.619546 GTCCACTTACTTATTATCTACGTCAGT 58.380 37.037 0.00 0.00 0.00 3.41
175 176 8.074972 GGTCCACTTACTTATTATCTACGTCAG 58.925 40.741 0.00 0.00 0.00 3.51
176 177 7.254898 CGGTCCACTTACTTATTATCTACGTCA 60.255 40.741 0.00 0.00 0.00 4.35
177 178 7.041780 TCGGTCCACTTACTTATTATCTACGTC 60.042 40.741 0.00 0.00 0.00 4.34
178 179 6.767902 TCGGTCCACTTACTTATTATCTACGT 59.232 38.462 0.00 0.00 0.00 3.57
179 180 7.194607 TCGGTCCACTTACTTATTATCTACG 57.805 40.000 0.00 0.00 0.00 3.51
180 181 9.978044 ATTTCGGTCCACTTACTTATTATCTAC 57.022 33.333 0.00 0.00 0.00 2.59
192 193 9.938280 CCATTAATAGATATTTCGGTCCACTTA 57.062 33.333 0.00 0.00 0.00 2.24
193 194 8.656806 TCCATTAATAGATATTTCGGTCCACTT 58.343 33.333 0.00 0.00 0.00 3.16
194 195 8.202461 TCCATTAATAGATATTTCGGTCCACT 57.798 34.615 0.00 0.00 0.00 4.00
195 196 8.842358 TTCCATTAATAGATATTTCGGTCCAC 57.158 34.615 0.00 0.00 0.00 4.02
196 197 8.656806 ACTTCCATTAATAGATATTTCGGTCCA 58.343 33.333 0.00 0.00 0.00 4.02
197 198 8.936864 CACTTCCATTAATAGATATTTCGGTCC 58.063 37.037 0.00 0.00 0.00 4.46
198 199 8.936864 CCACTTCCATTAATAGATATTTCGGTC 58.063 37.037 0.00 0.00 0.00 4.79
199 200 8.437575 ACCACTTCCATTAATAGATATTTCGGT 58.562 33.333 0.00 0.00 0.00 4.69
200 201 8.848474 ACCACTTCCATTAATAGATATTTCGG 57.152 34.615 0.00 0.00 0.00 4.30
201 202 9.489084 TGACCACTTCCATTAATAGATATTTCG 57.511 33.333 0.00 0.00 0.00 3.46
204 205 9.745018 CCATGACCACTTCCATTAATAGATATT 57.255 33.333 0.00 0.00 0.00 1.28
205 206 7.831193 GCCATGACCACTTCCATTAATAGATAT 59.169 37.037 0.00 0.00 0.00 1.63
206 207 7.168219 GCCATGACCACTTCCATTAATAGATA 58.832 38.462 0.00 0.00 0.00 1.98
207 208 6.006449 GCCATGACCACTTCCATTAATAGAT 58.994 40.000 0.00 0.00 0.00 1.98
208 209 5.376625 GCCATGACCACTTCCATTAATAGA 58.623 41.667 0.00 0.00 0.00 1.98
209 210 4.520492 GGCCATGACCACTTCCATTAATAG 59.480 45.833 0.00 0.00 0.00 1.73
210 211 4.079500 TGGCCATGACCACTTCCATTAATA 60.080 41.667 0.00 0.00 33.75 0.98
211 212 3.299503 GGCCATGACCACTTCCATTAAT 58.700 45.455 0.00 0.00 0.00 1.40
212 213 2.042297 TGGCCATGACCACTTCCATTAA 59.958 45.455 0.00 0.00 33.75 1.40
213 214 1.638070 TGGCCATGACCACTTCCATTA 59.362 47.619 0.00 0.00 33.75 1.90
214 215 0.409092 TGGCCATGACCACTTCCATT 59.591 50.000 0.00 0.00 33.75 3.16
215 216 0.033796 CTGGCCATGACCACTTCCAT 60.034 55.000 5.51 0.00 35.33 3.41
216 217 1.379916 CTGGCCATGACCACTTCCA 59.620 57.895 5.51 0.00 35.33 3.53
217 218 1.379044 CCTGGCCATGACCACTTCC 60.379 63.158 5.51 0.00 35.33 3.46
218 219 0.962356 CACCTGGCCATGACCACTTC 60.962 60.000 15.66 0.00 35.33 3.01
219 220 1.075482 CACCTGGCCATGACCACTT 59.925 57.895 15.66 0.00 35.33 3.16
220 221 2.759114 CACCTGGCCATGACCACT 59.241 61.111 15.66 0.00 35.33 4.00
221 222 2.361610 CCACCTGGCCATGACCAC 60.362 66.667 15.66 0.00 35.33 4.16
231 232 1.517832 CTTCGTCCTAGCCACCTGG 59.482 63.158 0.00 0.00 38.53 4.45
232 233 1.153549 GCTTCGTCCTAGCCACCTG 60.154 63.158 0.00 0.00 32.45 4.00
233 234 2.711922 CGCTTCGTCCTAGCCACCT 61.712 63.158 0.00 0.00 35.18 4.00
234 235 2.202756 CGCTTCGTCCTAGCCACC 60.203 66.667 0.00 0.00 35.18 4.61
235 236 2.001361 TAGCGCTTCGTCCTAGCCAC 62.001 60.000 18.68 0.00 35.18 5.01
236 237 1.725557 CTAGCGCTTCGTCCTAGCCA 61.726 60.000 18.68 0.00 35.18 4.75
237 238 1.008309 CTAGCGCTTCGTCCTAGCC 60.008 63.158 18.68 0.00 35.18 3.93
238 239 1.659026 GCTAGCGCTTCGTCCTAGC 60.659 63.158 18.68 13.50 36.64 3.42
239 240 0.317436 CAGCTAGCGCTTCGTCCTAG 60.317 60.000 18.68 5.87 46.47 3.02
240 241 1.728069 CAGCTAGCGCTTCGTCCTA 59.272 57.895 18.68 0.00 46.47 2.94
241 242 2.492090 CAGCTAGCGCTTCGTCCT 59.508 61.111 18.68 1.84 46.47 3.85
242 243 3.258290 GCAGCTAGCGCTTCGTCC 61.258 66.667 18.68 0.00 46.47 4.79
251 252 0.103937 AGAACCTCATCGCAGCTAGC 59.896 55.000 6.62 6.62 40.87 3.42
252 253 1.537776 CCAGAACCTCATCGCAGCTAG 60.538 57.143 0.00 0.00 0.00 3.42
253 254 0.461548 CCAGAACCTCATCGCAGCTA 59.538 55.000 0.00 0.00 0.00 3.32
254 255 1.220206 CCAGAACCTCATCGCAGCT 59.780 57.895 0.00 0.00 0.00 4.24
255 256 1.817099 CCCAGAACCTCATCGCAGC 60.817 63.158 0.00 0.00 0.00 5.25
256 257 0.036010 AACCCAGAACCTCATCGCAG 60.036 55.000 0.00 0.00 0.00 5.18
257 258 0.036388 GAACCCAGAACCTCATCGCA 60.036 55.000 0.00 0.00 0.00 5.10
258 259 1.084370 CGAACCCAGAACCTCATCGC 61.084 60.000 0.00 0.00 0.00 4.58
259 260 0.530744 TCGAACCCAGAACCTCATCG 59.469 55.000 0.00 0.00 0.00 3.84
260 261 2.990066 ATCGAACCCAGAACCTCATC 57.010 50.000 0.00 0.00 0.00 2.92
261 262 3.775316 AGTTATCGAACCCAGAACCTCAT 59.225 43.478 0.00 0.00 36.08 2.90
262 263 3.170717 AGTTATCGAACCCAGAACCTCA 58.829 45.455 0.00 0.00 36.08 3.86
263 264 3.889520 AGTTATCGAACCCAGAACCTC 57.110 47.619 0.00 0.00 36.08 3.85
264 265 4.351127 ACTAGTTATCGAACCCAGAACCT 58.649 43.478 0.00 0.00 36.08 3.50
265 266 4.732672 ACTAGTTATCGAACCCAGAACC 57.267 45.455 0.00 0.00 36.08 3.62
266 267 5.107824 GGAACTAGTTATCGAACCCAGAAC 58.892 45.833 8.42 0.00 36.08 3.01
267 268 4.773674 TGGAACTAGTTATCGAACCCAGAA 59.226 41.667 8.42 0.00 36.08 3.02
268 269 4.346730 TGGAACTAGTTATCGAACCCAGA 58.653 43.478 8.42 0.00 36.08 3.86
269 270 4.683832 CTGGAACTAGTTATCGAACCCAG 58.316 47.826 17.84 17.84 35.21 4.45
270 271 3.118884 GCTGGAACTAGTTATCGAACCCA 60.119 47.826 8.42 8.79 36.08 4.51
271 272 3.132467 AGCTGGAACTAGTTATCGAACCC 59.868 47.826 8.42 4.21 36.08 4.11
272 273 4.388378 AGCTGGAACTAGTTATCGAACC 57.612 45.455 8.42 4.97 36.08 3.62
273 274 6.562518 AGTTAGCTGGAACTAGTTATCGAAC 58.437 40.000 8.42 10.00 37.90 3.95
274 275 6.183360 GGAGTTAGCTGGAACTAGTTATCGAA 60.183 42.308 8.42 0.00 39.79 3.71
275 276 5.298777 GGAGTTAGCTGGAACTAGTTATCGA 59.701 44.000 8.42 0.00 39.79 3.59
276 277 5.067413 TGGAGTTAGCTGGAACTAGTTATCG 59.933 44.000 8.42 0.75 39.79 2.92
277 278 6.466885 TGGAGTTAGCTGGAACTAGTTATC 57.533 41.667 8.42 4.85 39.79 1.75
278 279 5.163395 GCTGGAGTTAGCTGGAACTAGTTAT 60.163 44.000 8.42 0.00 39.79 1.89
279 280 4.159879 GCTGGAGTTAGCTGGAACTAGTTA 59.840 45.833 8.42 0.00 39.79 2.24
280 281 3.055747 GCTGGAGTTAGCTGGAACTAGTT 60.056 47.826 8.13 8.13 39.79 2.24
281 282 2.498078 GCTGGAGTTAGCTGGAACTAGT 59.502 50.000 1.81 0.00 39.79 2.57
282 283 2.480416 CGCTGGAGTTAGCTGGAACTAG 60.480 54.545 1.81 0.00 39.79 2.57
283 284 1.476891 CGCTGGAGTTAGCTGGAACTA 59.523 52.381 1.81 0.00 39.79 2.24
284 285 0.247736 CGCTGGAGTTAGCTGGAACT 59.752 55.000 1.40 1.40 42.42 3.01
285 286 0.037232 ACGCTGGAGTTAGCTGGAAC 60.037 55.000 0.00 0.00 41.51 3.62
286 287 0.037326 CACGCTGGAGTTAGCTGGAA 60.037 55.000 0.00 0.00 41.51 3.53
287 288 1.591703 CACGCTGGAGTTAGCTGGA 59.408 57.895 0.00 0.00 41.51 3.86
288 289 2.103042 GCACGCTGGAGTTAGCTGG 61.103 63.158 0.00 0.00 41.51 4.85
289 290 2.447887 CGCACGCTGGAGTTAGCTG 61.448 63.158 0.00 0.00 41.51 4.24
290 291 2.125912 CGCACGCTGGAGTTAGCT 60.126 61.111 0.00 0.00 41.51 3.32
291 292 3.854459 GCGCACGCTGGAGTTAGC 61.854 66.667 7.96 0.00 40.29 3.09
292 293 3.188786 GGCGCACGCTGGAGTTAG 61.189 66.667 15.36 0.00 41.60 2.34
293 294 4.752879 GGGCGCACGCTGGAGTTA 62.753 66.667 15.36 0.00 41.60 2.24
318 319 0.250424 TCATGCCACATATGCGGGAG 60.250 55.000 16.14 6.36 0.00 4.30
319 320 0.401356 ATCATGCCACATATGCGGGA 59.599 50.000 16.14 11.90 0.00 5.14
320 321 1.250328 AATCATGCCACATATGCGGG 58.750 50.000 11.69 10.35 0.00 6.13
321 322 2.293955 TCAAATCATGCCACATATGCGG 59.706 45.455 5.33 5.33 0.00 5.69
322 323 3.629438 TCAAATCATGCCACATATGCG 57.371 42.857 1.58 0.00 0.00 4.73
323 324 4.688879 CCAATCAAATCATGCCACATATGC 59.311 41.667 1.58 0.00 0.00 3.14
324 325 6.091718 TCCAATCAAATCATGCCACATATG 57.908 37.500 0.00 0.00 0.00 1.78
325 326 6.098552 TGTTCCAATCAAATCATGCCACATAT 59.901 34.615 0.00 0.00 0.00 1.78
326 327 5.421374 TGTTCCAATCAAATCATGCCACATA 59.579 36.000 0.00 0.00 0.00 2.29
327 328 4.223255 TGTTCCAATCAAATCATGCCACAT 59.777 37.500 0.00 0.00 0.00 3.21
328 329 3.577415 TGTTCCAATCAAATCATGCCACA 59.423 39.130 0.00 0.00 0.00 4.17
329 330 4.191033 TGTTCCAATCAAATCATGCCAC 57.809 40.909 0.00 0.00 0.00 5.01
330 331 4.886496 TTGTTCCAATCAAATCATGCCA 57.114 36.364 0.00 0.00 0.00 4.92
331 332 6.746745 ATTTTGTTCCAATCAAATCATGCC 57.253 33.333 0.00 0.00 35.25 4.40
332 333 9.153721 TCTTATTTTGTTCCAATCAAATCATGC 57.846 29.630 0.00 0.00 35.25 4.06
334 335 9.657419 GGTCTTATTTTGTTCCAATCAAATCAT 57.343 29.630 0.00 0.00 35.25 2.45
335 336 8.093927 GGGTCTTATTTTGTTCCAATCAAATCA 58.906 33.333 0.00 0.00 35.25 2.57
336 337 7.275560 CGGGTCTTATTTTGTTCCAATCAAATC 59.724 37.037 0.00 0.00 35.25 2.17
337 338 7.096551 CGGGTCTTATTTTGTTCCAATCAAAT 58.903 34.615 0.00 0.00 35.25 2.32
338 339 6.451393 CGGGTCTTATTTTGTTCCAATCAAA 58.549 36.000 0.00 0.00 33.76 2.69
339 340 5.047660 CCGGGTCTTATTTTGTTCCAATCAA 60.048 40.000 0.00 0.00 0.00 2.57
340 341 4.461081 CCGGGTCTTATTTTGTTCCAATCA 59.539 41.667 0.00 0.00 0.00 2.57
341 342 4.461431 ACCGGGTCTTATTTTGTTCCAATC 59.539 41.667 6.32 0.00 0.00 2.67
342 343 4.412843 ACCGGGTCTTATTTTGTTCCAAT 58.587 39.130 6.32 0.00 0.00 3.16
343 344 3.822167 GACCGGGTCTTATTTTGTTCCAA 59.178 43.478 19.92 0.00 0.00 3.53
344 345 3.414269 GACCGGGTCTTATTTTGTTCCA 58.586 45.455 19.92 0.00 0.00 3.53
345 346 2.751259 GGACCGGGTCTTATTTTGTTCC 59.249 50.000 25.39 2.28 32.47 3.62
346 347 2.751259 GGGACCGGGTCTTATTTTGTTC 59.249 50.000 25.39 5.74 32.47 3.18
347 348 2.108601 TGGGACCGGGTCTTATTTTGTT 59.891 45.455 25.39 0.00 32.47 2.83
348 349 1.706305 TGGGACCGGGTCTTATTTTGT 59.294 47.619 25.39 0.00 32.47 2.83
349 350 2.089201 GTGGGACCGGGTCTTATTTTG 58.911 52.381 25.39 0.00 32.47 2.44
350 351 1.005097 GGTGGGACCGGGTCTTATTTT 59.995 52.381 25.39 0.00 32.47 1.82
351 352 0.622136 GGTGGGACCGGGTCTTATTT 59.378 55.000 25.39 0.00 32.47 1.40
352 353 1.276859 GGGTGGGACCGGGTCTTATT 61.277 60.000 25.39 0.00 39.83 1.40
353 354 1.691689 GGGTGGGACCGGGTCTTAT 60.692 63.158 25.39 0.00 39.83 1.73
354 355 2.284847 GGGTGGGACCGGGTCTTA 60.285 66.667 25.39 12.68 39.83 2.10
355 356 2.405522 TAAGGGTGGGACCGGGTCTT 62.406 60.000 25.39 13.63 39.83 3.01
356 357 2.405522 TTAAGGGTGGGACCGGGTCT 62.406 60.000 25.39 7.54 39.83 3.85
357 358 1.491274 TTTAAGGGTGGGACCGGGTC 61.491 60.000 19.06 19.06 39.83 4.46
358 359 1.067173 TTTTAAGGGTGGGACCGGGT 61.067 55.000 6.32 0.00 39.83 5.28
359 360 0.333652 ATTTTAAGGGTGGGACCGGG 59.666 55.000 6.32 0.00 39.83 5.73
360 361 1.004979 TGATTTTAAGGGTGGGACCGG 59.995 52.381 0.00 0.00 39.83 5.28
361 362 2.026636 TCTGATTTTAAGGGTGGGACCG 60.027 50.000 0.00 0.00 39.83 4.79
362 363 3.265995 TCTCTGATTTTAAGGGTGGGACC 59.734 47.826 0.00 0.00 37.60 4.46
363 364 4.518249 CTCTCTGATTTTAAGGGTGGGAC 58.482 47.826 0.00 0.00 0.00 4.46
364 365 3.523564 CCTCTCTGATTTTAAGGGTGGGA 59.476 47.826 0.00 0.00 0.00 4.37
365 366 3.372025 CCCTCTCTGATTTTAAGGGTGGG 60.372 52.174 0.00 0.00 41.37 4.61
366 367 3.372025 CCCCTCTCTGATTTTAAGGGTGG 60.372 52.174 5.11 0.00 44.44 4.61
367 368 3.372025 CCCCCTCTCTGATTTTAAGGGTG 60.372 52.174 5.11 0.00 44.44 4.61
368 369 2.853077 CCCCCTCTCTGATTTTAAGGGT 59.147 50.000 5.11 0.00 44.44 4.34
369 370 3.584733 CCCCCTCTCTGATTTTAAGGG 57.415 52.381 0.00 0.00 45.34 3.95
386 387 8.996651 TTCTTTTTAATCTAATCATCTCCCCC 57.003 34.615 0.00 0.00 0.00 5.40
412 413 6.659242 TCCTGTGACTGTCTTTTTCTCTTTTT 59.341 34.615 9.51 0.00 0.00 1.94
413 414 6.180472 TCCTGTGACTGTCTTTTTCTCTTTT 58.820 36.000 9.51 0.00 0.00 2.27
414 415 5.745227 TCCTGTGACTGTCTTTTTCTCTTT 58.255 37.500 9.51 0.00 0.00 2.52
415 416 5.359194 TCCTGTGACTGTCTTTTTCTCTT 57.641 39.130 9.51 0.00 0.00 2.85
416 417 5.303971 CATCCTGTGACTGTCTTTTTCTCT 58.696 41.667 9.51 0.00 0.00 3.10
417 418 4.453819 CCATCCTGTGACTGTCTTTTTCTC 59.546 45.833 9.51 0.00 0.00 2.87
418 419 4.103153 TCCATCCTGTGACTGTCTTTTTCT 59.897 41.667 9.51 0.00 0.00 2.52
419 420 4.389374 TCCATCCTGTGACTGTCTTTTTC 58.611 43.478 9.51 0.00 0.00 2.29
420 421 4.141390 ACTCCATCCTGTGACTGTCTTTTT 60.141 41.667 9.51 0.00 0.00 1.94
421 422 3.392616 ACTCCATCCTGTGACTGTCTTTT 59.607 43.478 9.51 0.00 0.00 2.27
422 423 2.975489 ACTCCATCCTGTGACTGTCTTT 59.025 45.455 9.51 0.00 0.00 2.52
423 424 2.301296 CACTCCATCCTGTGACTGTCTT 59.699 50.000 9.51 0.00 36.38 3.01
424 425 1.898472 CACTCCATCCTGTGACTGTCT 59.102 52.381 9.51 0.00 36.38 3.41
425 426 1.066573 CCACTCCATCCTGTGACTGTC 60.067 57.143 0.00 0.00 36.38 3.51
426 427 0.979665 CCACTCCATCCTGTGACTGT 59.020 55.000 0.00 0.00 36.38 3.55
427 428 0.251354 CCCACTCCATCCTGTGACTG 59.749 60.000 0.00 0.00 36.38 3.51
428 429 0.117140 TCCCACTCCATCCTGTGACT 59.883 55.000 0.00 0.00 36.38 3.41
429 430 0.539051 CTCCCACTCCATCCTGTGAC 59.461 60.000 0.00 0.00 36.38 3.67
430 431 1.267574 GCTCCCACTCCATCCTGTGA 61.268 60.000 0.00 0.00 36.38 3.58
431 432 1.222936 GCTCCCACTCCATCCTGTG 59.777 63.158 0.00 0.00 0.00 3.66
432 433 1.229625 TGCTCCCACTCCATCCTGT 60.230 57.895 0.00 0.00 0.00 4.00
433 434 1.222936 GTGCTCCCACTCCATCCTG 59.777 63.158 0.00 0.00 38.93 3.86
434 435 1.229625 TGTGCTCCCACTCCATCCT 60.230 57.895 0.00 0.00 42.54 3.24
435 436 1.222936 CTGTGCTCCCACTCCATCC 59.777 63.158 0.00 0.00 42.54 3.51
436 437 0.835941 ATCTGTGCTCCCACTCCATC 59.164 55.000 0.00 0.00 42.54 3.51
437 438 0.545171 CATCTGTGCTCCCACTCCAT 59.455 55.000 0.00 0.00 42.54 3.41
438 439 1.556373 CCATCTGTGCTCCCACTCCA 61.556 60.000 0.00 0.00 42.54 3.86
439 440 1.222936 CCATCTGTGCTCCCACTCC 59.777 63.158 0.00 0.00 42.54 3.85
440 441 1.222936 CCCATCTGTGCTCCCACTC 59.777 63.158 0.00 0.00 42.54 3.51
441 442 0.842030 TTCCCATCTGTGCTCCCACT 60.842 55.000 0.00 0.00 42.54 4.00
442 443 0.678048 GTTCCCATCTGTGCTCCCAC 60.678 60.000 0.00 0.00 42.40 4.61
443 444 1.133181 TGTTCCCATCTGTGCTCCCA 61.133 55.000 0.00 0.00 0.00 4.37
444 445 0.257039 ATGTTCCCATCTGTGCTCCC 59.743 55.000 0.00 0.00 0.00 4.30
445 446 1.386533 CATGTTCCCATCTGTGCTCC 58.613 55.000 0.00 0.00 0.00 4.70
446 447 1.065199 TCCATGTTCCCATCTGTGCTC 60.065 52.381 0.00 0.00 0.00 4.26
447 448 0.994247 TCCATGTTCCCATCTGTGCT 59.006 50.000 0.00 0.00 0.00 4.40
448 449 1.952296 GATCCATGTTCCCATCTGTGC 59.048 52.381 0.00 0.00 0.00 4.57
449 450 2.174210 AGGATCCATGTTCCCATCTGTG 59.826 50.000 15.82 0.00 33.45 3.66
450 451 2.496297 AGGATCCATGTTCCCATCTGT 58.504 47.619 15.82 0.00 33.45 3.41
451 452 3.484407 GAAGGATCCATGTTCCCATCTG 58.516 50.000 15.82 0.00 33.45 2.90
452 453 2.105477 CGAAGGATCCATGTTCCCATCT 59.895 50.000 15.82 0.00 33.45 2.90
453 454 2.158755 ACGAAGGATCCATGTTCCCATC 60.159 50.000 15.82 6.74 33.45 3.51
454 455 1.846439 ACGAAGGATCCATGTTCCCAT 59.154 47.619 15.82 0.00 33.45 4.00
455 456 1.285280 ACGAAGGATCCATGTTCCCA 58.715 50.000 15.82 0.00 33.45 4.37
456 457 2.698797 TCTACGAAGGATCCATGTTCCC 59.301 50.000 15.82 0.00 33.45 3.97
457 458 3.385111 ACTCTACGAAGGATCCATGTTCC 59.615 47.826 15.82 4.17 0.00 3.62
458 459 4.363999 CACTCTACGAAGGATCCATGTTC 58.636 47.826 15.82 8.32 0.00 3.18
459 460 3.133003 CCACTCTACGAAGGATCCATGTT 59.867 47.826 15.82 0.00 0.00 2.71
460 461 2.695666 CCACTCTACGAAGGATCCATGT 59.304 50.000 15.82 11.43 0.00 3.21
461 462 2.036475 CCCACTCTACGAAGGATCCATG 59.964 54.545 15.82 5.39 0.00 3.66
462 463 2.320781 CCCACTCTACGAAGGATCCAT 58.679 52.381 15.82 0.17 0.00 3.41
463 464 1.776662 CCCACTCTACGAAGGATCCA 58.223 55.000 15.82 0.00 0.00 3.41
464 465 0.389757 GCCCACTCTACGAAGGATCC 59.610 60.000 2.48 2.48 0.00 3.36
465 466 1.067821 CAGCCCACTCTACGAAGGATC 59.932 57.143 0.00 0.00 0.00 3.36
466 467 1.115467 CAGCCCACTCTACGAAGGAT 58.885 55.000 0.00 0.00 0.00 3.24
467 468 0.970937 CCAGCCCACTCTACGAAGGA 60.971 60.000 0.00 0.00 0.00 3.36
468 469 1.517832 CCAGCCCACTCTACGAAGG 59.482 63.158 0.00 0.00 0.00 3.46
469 470 1.517832 CCCAGCCCACTCTACGAAG 59.482 63.158 0.00 0.00 0.00 3.79
470 471 2.656069 GCCCAGCCCACTCTACGAA 61.656 63.158 0.00 0.00 0.00 3.85
471 472 3.075005 GCCCAGCCCACTCTACGA 61.075 66.667 0.00 0.00 0.00 3.43
472 473 3.077556 AGCCCAGCCCACTCTACG 61.078 66.667 0.00 0.00 0.00 3.51
473 474 2.586792 CAGCCCAGCCCACTCTAC 59.413 66.667 0.00 0.00 0.00 2.59
474 475 2.688666 CCAGCCCAGCCCACTCTA 60.689 66.667 0.00 0.00 0.00 2.43
484 485 0.621571 AGTCTTATCTGGCCAGCCCA 60.622 55.000 28.91 11.93 42.79 5.36
485 486 1.346068 CTAGTCTTATCTGGCCAGCCC 59.654 57.143 28.91 10.96 34.56 5.19
486 487 2.036604 GACTAGTCTTATCTGGCCAGCC 59.963 54.545 28.91 10.61 0.00 4.85
487 488 2.695666 TGACTAGTCTTATCTGGCCAGC 59.304 50.000 28.91 12.85 0.00 4.85
488 489 5.344743 TTTGACTAGTCTTATCTGGCCAG 57.655 43.478 27.87 27.87 0.00 4.85
497 498 6.422701 CCACGTTGACATTTTGACTAGTCTTA 59.577 38.462 23.01 9.07 32.41 2.10
503 504 2.550606 GGCCACGTTGACATTTTGACTA 59.449 45.455 0.00 0.00 0.00 2.59
554 555 0.750546 TGACGTATGGGTCTCCCTCG 60.751 60.000 6.38 10.16 45.70 4.63
568 569 5.992729 ACGCTTTAAACATGTTTATGACGT 58.007 33.333 28.59 28.59 37.73 4.34
569 570 6.795114 AGAACGCTTTAAACATGTTTATGACG 59.205 34.615 27.14 27.51 37.73 4.35
579 580 5.064325 GGACGGATAAGAACGCTTTAAACAT 59.936 40.000 0.00 0.00 35.56 2.71
675 680 2.194889 GGGACGGGTTTGCCGAAAA 61.195 57.895 0.00 0.00 34.97 2.29
698 703 0.105760 AATTGCAGGAACCCACCACA 60.106 50.000 0.00 0.00 0.00 4.17
709 714 1.202687 TGCGGATCTAGGAATTGCAGG 60.203 52.381 0.00 0.00 0.00 4.85
713 718 4.065321 ACTTCTGCGGATCTAGGAATTG 57.935 45.455 0.00 0.00 0.00 2.32
737 742 1.235281 ATGCGCATATGCTCTGCCTG 61.235 55.000 24.02 8.93 39.32 4.85
763 768 1.970917 CTCGTAGGCCAAAGCGCAAG 61.971 60.000 11.47 0.00 41.24 4.01
768 773 1.300481 GGATTCTCGTAGGCCAAAGC 58.700 55.000 5.01 0.00 38.76 3.51
785 790 1.688735 CAAGAGGTCAGATATGGCGGA 59.311 52.381 0.00 0.00 0.00 5.54
869 874 1.291132 GCTCGTTGATTAGCTCCACC 58.709 55.000 0.00 0.00 35.80 4.61
875 880 1.262683 GATGCCTGCTCGTTGATTAGC 59.737 52.381 0.00 0.00 39.25 3.09
903 920 4.065088 GTGTTTTGACTCCTGTGATAGCA 58.935 43.478 0.00 0.00 0.00 3.49
906 923 4.594123 TCGTGTTTTGACTCCTGTGATA 57.406 40.909 0.00 0.00 0.00 2.15
913 930 2.287103 GGTGTCTTCGTGTTTTGACTCC 59.713 50.000 0.00 0.00 36.42 3.85
996 1021 1.000955 CGAGGAGGTAGCGCCATTATT 59.999 52.381 17.31 0.00 40.61 1.40
997 1022 0.603569 CGAGGAGGTAGCGCCATTAT 59.396 55.000 17.31 0.00 40.61 1.28
998 1023 0.754217 ACGAGGAGGTAGCGCCATTA 60.754 55.000 17.31 0.00 40.61 1.90
1010 1035 0.814457 CACCAGAAGGAGACGAGGAG 59.186 60.000 0.00 0.00 38.69 3.69
1048 1076 3.827898 GTCCGCCTCTCCGGTGAG 61.828 72.222 23.74 23.74 46.58 3.51
1119 1147 2.643272 GTGTCGGTGAGCGAGTCA 59.357 61.111 7.11 0.00 0.00 3.41
1293 1340 4.095932 CAGTATAGTAGTGCAGGTCAACGA 59.904 45.833 0.00 0.00 0.00 3.85
1319 1369 8.340618 ACAAGACATAATTGTGAGCTTGTATT 57.659 30.769 28.08 15.53 41.51 1.89
1340 1390 0.679002 CTCCACTGCATCCCCACAAG 60.679 60.000 0.00 0.00 0.00 3.16
1507 2974 0.735632 CTCGTCTGGTTGCTGAGAGC 60.736 60.000 0.00 0.00 42.82 4.09
1563 3030 1.740585 GTACATTGCATACCGTTGCCA 59.259 47.619 0.00 0.00 42.06 4.92
1583 3501 3.526931 ATCAAGGACCGTGATGTACAG 57.473 47.619 20.49 0.00 34.40 2.74
1584 3502 3.259625 TGAATCAAGGACCGTGATGTACA 59.740 43.478 21.64 17.96 35.87 2.90
1585 3503 3.857052 TGAATCAAGGACCGTGATGTAC 58.143 45.455 21.64 16.05 35.87 2.90
1586 3504 4.161377 TCATGAATCAAGGACCGTGATGTA 59.839 41.667 21.64 14.43 35.87 2.29
1587 3505 3.055167 TCATGAATCAAGGACCGTGATGT 60.055 43.478 21.64 12.62 35.87 3.06
1588 3506 3.534554 TCATGAATCAAGGACCGTGATG 58.465 45.455 21.64 12.04 35.87 3.07
1597 3515 6.128336 GCGAATAAGGATCTCATGAATCAAGG 60.128 42.308 15.30 0.00 0.00 3.61
1601 3519 6.791887 TTGCGAATAAGGATCTCATGAATC 57.208 37.500 0.00 3.34 0.00 2.52
1602 3520 7.572523 TTTTGCGAATAAGGATCTCATGAAT 57.427 32.000 0.00 0.00 0.00 2.57
1603 3521 7.389803 TTTTTGCGAATAAGGATCTCATGAA 57.610 32.000 0.00 0.00 0.00 2.57
1628 3546 6.773976 TTGGCGGATCTCATAAATCTTTTT 57.226 33.333 0.00 0.00 0.00 1.94
1629 3547 6.966534 ATTGGCGGATCTCATAAATCTTTT 57.033 33.333 0.00 0.00 0.00 2.27
1630 3548 6.547141 TGAATTGGCGGATCTCATAAATCTTT 59.453 34.615 0.00 0.00 0.00 2.52
1631 3549 6.064060 TGAATTGGCGGATCTCATAAATCTT 58.936 36.000 0.00 0.00 0.00 2.40
1632 3550 5.624159 TGAATTGGCGGATCTCATAAATCT 58.376 37.500 0.00 0.00 0.00 2.40
1637 3555 6.950842 AGAATATGAATTGGCGGATCTCATA 58.049 36.000 0.00 0.00 34.44 2.15
1656 3578 6.016527 GTGTCATCATGGACCGTACTAGAATA 60.017 42.308 0.00 0.00 36.97 1.75
1660 3582 3.548214 CGTGTCATCATGGACCGTACTAG 60.548 52.174 0.00 0.00 36.97 2.57
1663 3585 1.133598 TCGTGTCATCATGGACCGTAC 59.866 52.381 0.00 0.00 36.97 3.67
1675 3597 1.784856 CGAAACGTGAACTCGTGTCAT 59.215 47.619 16.06 0.81 45.09 3.06
1676 3598 1.193644 CGAAACGTGAACTCGTGTCA 58.806 50.000 16.06 0.00 45.09 3.58
1677 3599 0.111835 GCGAAACGTGAACTCGTGTC 60.112 55.000 8.82 8.82 43.38 3.67
1679 3601 0.299300 TTGCGAAACGTGAACTCGTG 59.701 50.000 10.15 0.00 43.38 4.35
1738 3709 1.153289 ATCTTGCGCTGCCCTGTAG 60.153 57.895 9.73 0.00 0.00 2.74
1930 3901 1.559065 TTAGCTAGGGTGGGTGTGGC 61.559 60.000 0.00 0.00 0.00 5.01
1963 3935 1.277557 AGAATGAGACAGGTGAGGTGC 59.722 52.381 0.00 0.00 0.00 5.01
1964 3936 4.403752 TCATAGAATGAGACAGGTGAGGTG 59.596 45.833 0.00 0.00 33.59 4.00
1979 3951 3.274393 GCGTCCTGCGTCATAGAAT 57.726 52.632 0.00 0.00 43.66 2.40
2223 4195 2.189521 GTGATGGGGCGGTACAGG 59.810 66.667 0.00 0.00 0.00 4.00
2250 4222 1.202651 CCGTATTTTCTGGGCGAGGAT 60.203 52.381 0.00 0.00 0.00 3.24
2321 4293 8.488651 AAACCATACATTAGTTAGAACCGAAG 57.511 34.615 0.00 0.00 0.00 3.79
2334 4306 3.129638 GCGCCAAGGAAAACCATACATTA 59.870 43.478 0.00 0.00 0.00 1.90
2361 4334 2.430465 CCTGCCACAGATATACATGCC 58.570 52.381 0.00 0.00 32.44 4.40
2487 4463 2.126189 GAAACGGACCTCGACGGG 60.126 66.667 0.00 0.00 42.43 5.28
2495 4471 1.743995 CCATCCCACGAAACGGACC 60.744 63.158 0.00 0.00 0.00 4.46
2568 4544 4.083537 TGTTCGTTGATGGCTCATTACAAC 60.084 41.667 0.00 0.00 37.87 3.32
2596 4572 1.064017 TGTTGTCCAGGCCTTCTTTGT 60.064 47.619 0.00 0.00 0.00 2.83
2601 4577 1.515521 CCGTTGTTGTCCAGGCCTTC 61.516 60.000 0.00 0.00 0.00 3.46
2721 4728 9.145865 CAACACAATTACACAAACCTTAAACTT 57.854 29.630 0.00 0.00 0.00 2.66
2741 4748 5.335269 CGTAACATTTAGGGATTGCAACACA 60.335 40.000 0.00 0.00 0.00 3.72
2742 4749 5.092781 CGTAACATTTAGGGATTGCAACAC 58.907 41.667 0.00 0.00 0.00 3.32
2743 4750 5.004448 TCGTAACATTTAGGGATTGCAACA 58.996 37.500 0.00 0.00 0.00 3.33
2744 4751 5.329493 GTCGTAACATTTAGGGATTGCAAC 58.671 41.667 0.00 0.00 0.00 4.17
2745 4752 4.396790 GGTCGTAACATTTAGGGATTGCAA 59.603 41.667 0.00 0.00 0.00 4.08
2746 4753 3.942748 GGTCGTAACATTTAGGGATTGCA 59.057 43.478 0.00 0.00 0.00 4.08
2747 4754 3.314357 GGGTCGTAACATTTAGGGATTGC 59.686 47.826 0.00 0.00 0.00 3.56
2748 4755 4.519213 TGGGTCGTAACATTTAGGGATTG 58.481 43.478 0.00 0.00 0.00 2.67
2751 4758 4.637387 TTTGGGTCGTAACATTTAGGGA 57.363 40.909 0.00 0.00 0.00 4.20
2759 4766 4.023021 GCCTTTATGTTTTGGGTCGTAACA 60.023 41.667 0.00 0.00 36.35 2.41
2760 4767 4.478699 GCCTTTATGTTTTGGGTCGTAAC 58.521 43.478 0.00 0.00 0.00 2.50
2761 4768 3.506844 GGCCTTTATGTTTTGGGTCGTAA 59.493 43.478 0.00 0.00 0.00 3.18
2765 4772 4.341487 AGTAGGCCTTTATGTTTTGGGTC 58.659 43.478 12.58 0.00 0.00 4.46
2766 4773 4.044191 AGAGTAGGCCTTTATGTTTTGGGT 59.956 41.667 12.58 0.00 0.00 4.51
2789 4796 2.106074 GCATTCCGTCATGCCACGA 61.106 57.895 8.40 0.00 43.38 4.35
2792 4799 3.507924 GCGCATTCCGTCATGCCA 61.508 61.111 0.30 0.00 45.95 4.92
2793 4800 3.204827 AGCGCATTCCGTCATGCC 61.205 61.111 11.47 4.23 45.95 4.40
2794 4801 2.023741 CAGCGCATTCCGTCATGC 59.976 61.111 11.47 6.07 45.34 4.06
2800 4807 1.811266 ACTAGTGCAGCGCATTCCG 60.811 57.895 11.47 0.00 41.91 4.30
2822 4829 2.103601 GAGGGCCTTAACATAACCGCTA 59.896 50.000 7.89 0.00 0.00 4.26
2830 4837 3.954258 GTGCAATAAGAGGGCCTTAACAT 59.046 43.478 7.89 0.00 40.45 2.71
2841 4848 3.498397 ACAGTTTCGGTGTGCAATAAGAG 59.502 43.478 0.00 0.00 0.00 2.85
2842 4849 3.472652 ACAGTTTCGGTGTGCAATAAGA 58.527 40.909 0.00 0.00 0.00 2.10
2848 4855 1.870402 CACATACAGTTTCGGTGTGCA 59.130 47.619 0.00 0.00 34.50 4.57
2856 4863 5.389516 GGTTCACGTCATCACATACAGTTTC 60.390 44.000 0.00 0.00 0.00 2.78
2861 4868 3.669251 TGGTTCACGTCATCACATACA 57.331 42.857 0.00 0.00 0.00 2.29
2862 4869 4.433615 AGATGGTTCACGTCATCACATAC 58.566 43.478 15.04 0.47 41.45 2.39
2865 4872 2.298729 TGAGATGGTTCACGTCATCACA 59.701 45.455 15.04 12.40 41.45 3.58
2887 5207 9.755804 TGTGATGATACATTAAAAAGTTTTGCA 57.244 25.926 0.61 0.00 0.00 4.08
2929 5288 4.377022 GCGAACATCATAACACACGACTTT 60.377 41.667 0.00 0.00 0.00 2.66
2960 5319 7.663905 TGCAGCCTGAAAAACTTTCTACTATTA 59.336 33.333 0.00 0.00 0.00 0.98
2988 5347 0.535335 TGCGATGGGTAGAGGTCAAC 59.465 55.000 0.00 0.00 0.00 3.18
3140 5499 0.246635 GCTAGCGTCAAAGTGGAGGA 59.753 55.000 0.00 0.00 0.00 3.71
3142 5501 2.941453 TAGCTAGCGTCAAAGTGGAG 57.059 50.000 9.55 0.00 0.00 3.86
3145 5504 3.542704 CGTACTTAGCTAGCGTCAAAGTG 59.457 47.826 25.06 13.62 32.85 3.16
3146 5505 3.756069 CGTACTTAGCTAGCGTCAAAGT 58.244 45.455 22.40 22.40 34.86 2.66
3150 5509 0.027194 CGCGTACTTAGCTAGCGTCA 59.973 55.000 9.55 0.00 44.96 4.35
3151 5510 2.768313 CGCGTACTTAGCTAGCGTC 58.232 57.895 9.55 5.37 44.96 5.19
3164 5523 4.501714 GGATGTCACCCGCGCGTA 62.502 66.667 29.95 8.25 0.00 4.42
3172 5531 0.605319 TTGACCGCTTGGATGTCACC 60.605 55.000 0.00 0.00 38.64 4.02
3174 5533 0.396435 AGTTGACCGCTTGGATGTCA 59.604 50.000 0.00 0.00 37.24 3.58
3194 5553 0.534203 ATTGAAACAGTGGACGCGGT 60.534 50.000 12.47 0.00 0.00 5.68
3197 5556 2.290641 AGTCAATTGAAACAGTGGACGC 59.709 45.455 10.35 0.00 0.00 5.19
3284 5643 2.648613 AATTGTTGGGCCCGACCACA 62.649 55.000 35.21 22.91 41.03 4.17
3285 5644 1.906333 AATTGTTGGGCCCGACCAC 60.906 57.895 35.21 20.68 41.03 4.16
3306 5665 0.822532 CCGTAGAGTATGAGGCCCGT 60.823 60.000 0.00 0.00 0.00 5.28
3308 5667 1.926108 ATCCGTAGAGTATGAGGCCC 58.074 55.000 0.00 0.00 0.00 5.80
3318 5677 4.028852 TCGTGACATTGAATCCGTAGAG 57.971 45.455 0.00 0.00 0.00 2.43
3324 5683 2.555199 CCTCCTCGTGACATTGAATCC 58.445 52.381 0.00 0.00 0.00 3.01
3325 5684 2.555199 CCCTCCTCGTGACATTGAATC 58.445 52.381 0.00 0.00 0.00 2.52
3327 5686 0.036388 GCCCTCCTCGTGACATTGAA 60.036 55.000 0.00 0.00 0.00 2.69
3329 5688 1.811266 CGCCCTCCTCGTGACATTG 60.811 63.158 0.00 0.00 0.00 2.82
3359 5718 2.711009 TGTCTTCCTGGATGAGTTGGTT 59.289 45.455 12.16 0.00 0.00 3.67
3360 5719 2.338809 TGTCTTCCTGGATGAGTTGGT 58.661 47.619 12.16 0.00 0.00 3.67
3383 5742 2.582978 GAACTCTGGGGCCGGTAC 59.417 66.667 1.90 0.00 0.00 3.34
3433 5792 1.202722 TCGGTTTTGAGTTGGAGGTCC 60.203 52.381 0.00 0.00 0.00 4.46
3449 5808 0.534412 CTGAGCCATGACTCTTCGGT 59.466 55.000 10.57 0.00 37.58 4.69
3470 5829 0.898320 CCATCGCCCTAGGGACTATG 59.102 60.000 33.21 26.23 41.70 2.23
3472 5831 1.155390 CCCATCGCCCTAGGGACTA 59.845 63.158 33.21 15.67 45.80 2.59
3485 5844 4.129148 GTGCCTCCCACCCCCATC 62.129 72.222 0.00 0.00 38.55 3.51
3497 5856 2.657237 GTACCAGAGCACGTGCCT 59.343 61.111 35.51 27.56 43.38 4.75
3546 5905 4.537433 CGTGCTAGAGCCTGCCCC 62.537 72.222 0.00 0.00 41.18 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.