Multiple sequence alignment - TraesCS6A01G276900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G276900 chr6A 100.000 4227 0 0 692 4918 503821195 503825421 0.000000e+00 7806.0
1 TraesCS6A01G276900 chr6A 100.000 354 0 0 1 354 503820504 503820857 0.000000e+00 654.0
2 TraesCS6A01G276900 chr6A 88.450 329 35 3 4549 4876 184350286 184350612 1.280000e-105 394.0
3 TraesCS6A01G276900 chr6A 87.719 57 6 1 1088 1144 163208043 163207988 1.140000e-06 65.8
4 TraesCS6A01G276900 chr6B 91.746 3901 192 42 692 4553 545270784 545274593 0.000000e+00 5301.0
5 TraesCS6A01G276900 chr6B 96.610 354 12 0 1 354 545270371 545270724 5.480000e-164 588.0
6 TraesCS6A01G276900 chr6D 94.721 2614 96 9 692 3290 363259389 363261975 0.000000e+00 4024.0
7 TraesCS6A01G276900 chr6D 92.530 1071 63 13 3426 4493 363262110 363263166 0.000000e+00 1519.0
8 TraesCS6A01G276900 chr6D 96.893 354 11 0 1 354 363258979 363259332 1.180000e-165 593.0
9 TraesCS6A01G276900 chr2A 91.463 328 24 3 4543 4870 488931686 488932009 9.710000e-122 448.0
10 TraesCS6A01G276900 chr2A 78.238 193 26 10 996 1184 710789608 710789428 5.200000e-20 110.0
11 TraesCS6A01G276900 chr5A 90.769 325 25 3 4550 4874 621835625 621835944 3.520000e-116 429.0
12 TraesCS6A01G276900 chr3A 90.654 321 25 3 4550 4870 700815363 700815048 5.890000e-114 422.0
13 TraesCS6A01G276900 chr3A 89.164 323 31 4 4550 4870 496991378 496991698 2.760000e-107 399.0
14 TraesCS6A01G276900 chr3B 90.343 321 28 2 4550 4870 24919599 24919282 7.610000e-113 418.0
15 TraesCS6A01G276900 chr7D 89.130 322 29 4 4550 4870 631017520 631017836 3.570000e-106 396.0
16 TraesCS6A01G276900 chr5B 88.288 333 36 2 4545 4877 610340217 610339888 3.570000e-106 396.0
17 TraesCS6A01G276900 chr1A 88.131 337 33 6 4546 4881 544997914 544998244 1.280000e-105 394.0
18 TraesCS6A01G276900 chr1D 79.500 200 25 9 996 1192 354724013 354724199 1.440000e-25 128.0
19 TraesCS6A01G276900 chr1B 79.167 192 25 8 996 1184 39905419 39905240 8.650000e-23 119.0
20 TraesCS6A01G276900 chr4B 78.238 193 26 9 996 1184 51669002 51669182 5.200000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G276900 chr6A 503820504 503825421 4917 False 4230.000000 7806 100.000000 1 4918 2 chr6A.!!$F2 4917
1 TraesCS6A01G276900 chr6B 545270371 545274593 4222 False 2944.500000 5301 94.178000 1 4553 2 chr6B.!!$F1 4552
2 TraesCS6A01G276900 chr6D 363258979 363263166 4187 False 2045.333333 4024 94.714667 1 4493 3 chr6D.!!$F1 4492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 980 0.395724 GGCGGGATCCCAACTGAATT 60.396 55.0 30.42 0.0 35.37 2.17 F
2414 2434 0.249447 TATGATGCCGCGAGACCAAG 60.249 55.0 8.23 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2820 2840 0.393808 TTAACGCTCTGCCCCAATCC 60.394 55.0 0.0 0.0 0.0 3.01 R
4386 4508 0.466372 AGACGGGATGCGATCTCTCA 60.466 55.0 0.0 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 1.822371 TCGATGATGAGGTTCCACGAA 59.178 47.619 0.00 0.00 0.00 3.85
300 301 2.735772 GGAGGCCAGGATCTCGCAA 61.736 63.158 5.01 0.00 0.00 4.85
321 322 3.090532 AGACGGATCTTGGGGGCC 61.091 66.667 0.00 0.00 0.00 5.80
952 958 4.379243 ACCAAGGCCGAGCAGACG 62.379 66.667 0.00 0.00 0.00 4.18
974 980 0.395724 GGCGGGATCCCAACTGAATT 60.396 55.000 30.42 0.00 35.37 2.17
1189 1200 2.872842 GCCGCTCAGGTAAAAACTACCA 60.873 50.000 3.88 0.00 43.70 3.25
1210 1221 0.595095 CCTCCAGTGCTTGTCTTTGC 59.405 55.000 0.00 0.00 0.00 3.68
1249 1260 8.345565 AGAAAACTGTAGAACTATTTGTTGCTG 58.654 33.333 0.00 0.00 39.30 4.41
1288 1303 6.957150 ACTGCAATGTATACTACGAGTAGAC 58.043 40.000 16.27 7.32 41.80 2.59
1385 1400 6.390721 CATGTGATAGGGTAAATCTACGAGG 58.609 44.000 0.00 0.00 0.00 4.63
1389 1404 3.111741 AGGGTAAATCTACGAGGTGGT 57.888 47.619 0.00 0.00 0.00 4.16
1399 1414 2.452767 CGAGGTGGTTCGTTTAGCC 58.547 57.895 0.00 0.00 35.91 3.93
1410 1425 4.201881 GGTTCGTTTAGCCAATGGTGTATC 60.202 45.833 0.00 0.00 0.00 2.24
1447 1466 7.289084 TGGGTTATACTACTGCACATCATCTTA 59.711 37.037 0.00 0.00 0.00 2.10
1455 1474 4.697352 ACTGCACATCATCTTAACAGTTCC 59.303 41.667 0.00 0.00 33.31 3.62
1473 1492 5.047872 CAGTTCCCACAATGTTGATTCATGA 60.048 40.000 0.00 0.00 0.00 3.07
1481 1500 7.601130 CCACAATGTTGATTCATGACAGAATTT 59.399 33.333 0.00 0.00 38.30 1.82
1494 1513 7.814107 TCATGACAGAATTTCCTTAAATTGCAC 59.186 33.333 0.00 0.00 43.69 4.57
1520 1539 2.967362 TGGGTAGTTTACATCTGCGTG 58.033 47.619 0.00 0.00 0.00 5.34
1532 1551 4.681744 ACATCTGCGTGTTTGAAAAATGT 58.318 34.783 0.00 0.00 0.00 2.71
1584 1603 8.045176 AGAAAAATGCCACTCTAAAGTATGAC 57.955 34.615 0.00 0.00 33.25 3.06
1727 1746 3.887716 AGCAATTGATGGGCTGTAAGATC 59.112 43.478 10.34 0.00 36.34 2.75
1742 1761 0.965866 AGATCGGGAACTCGCTCACA 60.966 55.000 1.10 0.00 0.00 3.58
1769 1788 3.375299 GTGCTGCTAATCTTTCGACCATT 59.625 43.478 0.00 0.00 0.00 3.16
1775 1794 5.880332 TGCTAATCTTTCGACCATTAAGCTT 59.120 36.000 3.48 3.48 0.00 3.74
1869 1889 3.614630 CGGAAAATGCCTTGATGCTGAAA 60.615 43.478 0.00 0.00 0.00 2.69
2058 2078 4.852991 AGGATAGATTGTAGGGGAGGAA 57.147 45.455 0.00 0.00 0.00 3.36
2208 2228 3.528597 ACAGAGGAATTTCTACGGCTC 57.471 47.619 0.00 0.00 0.00 4.70
2255 2275 8.849543 AGGTATAGGTTATCCTTGTTTGTCTA 57.150 34.615 0.00 0.00 42.12 2.59
2370 2390 1.478510 ACTGACATAGGAAGACTGGCG 59.521 52.381 0.00 0.00 0.00 5.69
2373 2393 0.456221 ACATAGGAAGACTGGCGTCG 59.544 55.000 4.34 0.00 44.93 5.12
2414 2434 0.249447 TATGATGCCGCGAGACCAAG 60.249 55.000 8.23 0.00 0.00 3.61
2491 2511 8.567285 ACAACTTCTTGAGGTAAATTATCTGG 57.433 34.615 0.00 0.00 0.00 3.86
2523 2543 5.592104 AGAAAAACTGTTTTACCCAGTGG 57.408 39.130 17.97 0.63 42.17 4.00
2526 2546 5.529581 AAAACTGTTTTACCCAGTGGATG 57.470 39.130 16.35 0.00 42.17 3.51
2596 2616 5.757886 TGTAGAAAATCTCGCTTTGGTTTG 58.242 37.500 0.00 0.00 0.00 2.93
2800 2820 3.124297 GTCTTTCTCGTCTCTGCCATTTG 59.876 47.826 0.00 0.00 0.00 2.32
2820 2840 3.325870 TGTACCAACTGATTCTTCTGCG 58.674 45.455 0.00 0.00 0.00 5.18
2878 2898 1.547372 CAAAGGGGCTGTTGAGGAATG 59.453 52.381 0.00 0.00 0.00 2.67
3156 3183 5.185056 AGTTAGCGCCCAAGTGATAAAAATT 59.815 36.000 2.29 0.00 36.22 1.82
3198 3225 5.467035 TCCCACCATCAACTTGAAAATTC 57.533 39.130 0.00 0.00 0.00 2.17
3241 3268 7.194607 ACCTGATAATGTTCAGATTAATGCG 57.805 36.000 6.71 0.00 44.88 4.73
3268 3295 4.574674 TCCCTAGCAAGTGACATCAAAT 57.425 40.909 0.00 0.00 0.00 2.32
3298 3325 3.193479 CACTAAAACAATGGAAGGGCCTC 59.807 47.826 6.46 0.00 37.63 4.70
3300 3327 3.825908 AAAACAATGGAAGGGCCTCTA 57.174 42.857 6.46 0.00 37.63 2.43
3301 3328 4.337264 AAAACAATGGAAGGGCCTCTAT 57.663 40.909 6.46 0.85 37.63 1.98
3302 3329 3.584733 AACAATGGAAGGGCCTCTATC 57.415 47.619 6.46 0.00 37.63 2.08
3303 3330 2.492025 ACAATGGAAGGGCCTCTATCA 58.508 47.619 6.46 3.33 37.63 2.15
3304 3331 3.059097 ACAATGGAAGGGCCTCTATCAT 58.941 45.455 6.46 5.78 37.63 2.45
3305 3332 4.242811 ACAATGGAAGGGCCTCTATCATA 58.757 43.478 6.46 0.00 37.63 2.15
3350 3377 7.436376 AGTTTGAAATCAAGCTTTAAGCAGTTC 59.564 33.333 19.63 13.15 43.37 3.01
3356 3383 6.787085 TCAAGCTTTAAGCAGTTCTAGTTC 57.213 37.500 19.63 0.00 45.56 3.01
3364 3391 3.131396 AGCAGTTCTAGTTCGTTTGGTG 58.869 45.455 0.00 0.00 0.00 4.17
3433 3460 9.507280 CAAATCGATTGTGCTGATATTAAAACT 57.493 29.630 12.25 0.00 34.16 2.66
3441 3468 6.816134 TGCTGATATTAAAACTGAAGCACA 57.184 33.333 0.00 0.00 34.68 4.57
3445 3544 8.801913 GCTGATATTAAAACTGAAGCACATTTC 58.198 33.333 0.00 0.00 0.00 2.17
3465 3564 1.300971 CCTGTGTGTGCTGATTCCCG 61.301 60.000 0.00 0.00 0.00 5.14
3478 3577 3.517602 TGATTCCCGTAATTGTCTGTCG 58.482 45.455 0.00 0.00 0.00 4.35
3558 3657 5.008118 AGCACAGAAGAAGCTTCTAAACAAC 59.992 40.000 28.67 16.74 36.28 3.32
3564 3663 7.749570 CAGAAGAAGCTTCTAAACAACATGATG 59.250 37.037 28.67 11.52 36.28 3.07
3567 3666 4.081406 AGCTTCTAAACAACATGATGCCA 58.919 39.130 0.00 0.00 32.36 4.92
3568 3667 4.523943 AGCTTCTAAACAACATGATGCCAA 59.476 37.500 0.00 0.00 32.36 4.52
3632 3732 6.573434 CCATGTAGCTACTTGTGATCTTACA 58.427 40.000 28.28 8.87 31.59 2.41
3654 3754 1.077212 AGTGGCCTGCATGTCATCC 60.077 57.895 3.32 0.00 0.00 3.51
3668 3768 3.153130 TGTCATCCGAGAATTTTGCCAA 58.847 40.909 0.00 0.00 0.00 4.52
3685 3785 1.743394 CCAAATAGTGGCGAAGAACCC 59.257 52.381 0.00 0.00 41.72 4.11
3741 3859 9.528018 CCAAGTTAAATTTGTATTGTCTGTGTT 57.472 29.630 0.00 0.00 0.00 3.32
3755 3873 7.503521 TTGTCTGTGTTGTTGCTGATAATAA 57.496 32.000 0.00 0.00 0.00 1.40
3903 4021 1.883926 TCGTCGACAGGAATCTTGTCA 59.116 47.619 22.34 9.25 33.20 3.58
3996 4115 3.050275 GGAGAACCGTGCAGCACC 61.050 66.667 20.16 5.67 0.00 5.01
4013 4132 3.132646 AGCACCGTAATGTAAACCCGATA 59.867 43.478 0.00 0.00 0.00 2.92
4033 4152 1.191535 TAGACCGGTTCCTGGTGATG 58.808 55.000 9.42 0.00 40.63 3.07
4036 4155 0.836400 ACCGGTTCCTGGTGATGTCT 60.836 55.000 0.00 0.00 38.60 3.41
4041 4160 2.613977 GGTTCCTGGTGATGTCTGTCAG 60.614 54.545 0.00 0.00 0.00 3.51
4070 4189 6.845280 CGTTTTTCCATTTTGCTGTAAACATG 59.155 34.615 0.00 0.00 0.00 3.21
4114 4233 7.416777 GGCATTATAGAAGTGGAAGAAAAAGGG 60.417 40.741 0.00 0.00 0.00 3.95
4116 4235 3.312736 AGAAGTGGAAGAAAAAGGGCA 57.687 42.857 0.00 0.00 0.00 5.36
4154 4273 6.070653 TGCCTGAGAAAATGGCTTTTGATATT 60.071 34.615 0.00 0.00 46.23 1.28
4174 4293 2.032681 GCTATCGGGGATGGGTGC 59.967 66.667 0.00 0.00 0.00 5.01
4192 4311 1.668419 GCTCTTGGCATCGTACCATT 58.332 50.000 0.00 0.00 41.35 3.16
4197 4316 2.700722 TGGCATCGTACCATTGCTTA 57.299 45.000 8.64 0.00 36.62 3.09
4198 4317 3.207265 TGGCATCGTACCATTGCTTAT 57.793 42.857 8.64 0.00 36.62 1.73
4199 4318 2.877786 TGGCATCGTACCATTGCTTATG 59.122 45.455 8.64 0.00 36.62 1.90
4216 4335 2.978156 ATGATGATTATTGGGCGGGT 57.022 45.000 0.00 0.00 0.00 5.28
4361 4483 2.078914 GTCGTACAGGCGTGACACG 61.079 63.158 23.43 23.43 45.88 4.49
4402 4524 0.039617 GACTGAGAGATCGCATCCCG 60.040 60.000 0.00 0.00 38.61 5.14
4412 4534 1.153369 CGCATCCCGTCTTCATGGT 60.153 57.895 0.00 0.00 0.00 3.55
4440 4562 2.130193 CCATGGATCCTTCCCTTCTCA 58.870 52.381 14.23 0.00 41.83 3.27
4473 4595 1.147376 TACTGCCAAGTGCCAACGT 59.853 52.632 0.00 0.00 40.16 3.99
4534 4659 0.594796 CAACACGCAAAAGTGGCCTC 60.595 55.000 3.32 0.00 45.80 4.70
4553 4678 1.279271 TCTCTTTTAGGCACTCAGGGC 59.721 52.381 0.00 0.00 41.75 5.19
4554 4679 1.003580 CTCTTTTAGGCACTCAGGGCA 59.996 52.381 0.00 0.00 41.75 5.36
4555 4680 1.635487 TCTTTTAGGCACTCAGGGCAT 59.365 47.619 0.00 0.00 41.75 4.40
4556 4681 1.747355 CTTTTAGGCACTCAGGGCATG 59.253 52.381 0.00 0.00 41.75 4.06
4557 4682 0.698238 TTTAGGCACTCAGGGCATGT 59.302 50.000 0.00 0.00 41.75 3.21
4558 4683 1.578897 TTAGGCACTCAGGGCATGTA 58.421 50.000 0.00 0.00 41.75 2.29
4559 4684 0.830648 TAGGCACTCAGGGCATGTAC 59.169 55.000 0.00 0.00 41.75 2.90
4560 4685 1.200760 AGGCACTCAGGGCATGTACA 61.201 55.000 0.00 0.00 35.46 2.90
4561 4686 0.322456 GGCACTCAGGGCATGTACAA 60.322 55.000 0.00 0.00 0.00 2.41
4562 4687 1.683011 GGCACTCAGGGCATGTACAAT 60.683 52.381 0.00 0.00 0.00 2.71
4563 4688 1.402968 GCACTCAGGGCATGTACAATG 59.597 52.381 0.00 0.12 0.00 2.82
4564 4689 2.019249 CACTCAGGGCATGTACAATGG 58.981 52.381 0.00 0.00 0.00 3.16
4565 4690 1.635487 ACTCAGGGCATGTACAATGGT 59.365 47.619 0.00 0.00 0.00 3.55
4566 4691 2.019249 CTCAGGGCATGTACAATGGTG 58.981 52.381 0.00 0.00 0.00 4.17
4567 4692 1.105457 CAGGGCATGTACAATGGTGG 58.895 55.000 0.00 0.00 0.00 4.61
4568 4693 0.684153 AGGGCATGTACAATGGTGGC 60.684 55.000 11.25 11.25 36.52 5.01
4569 4694 0.969917 GGGCATGTACAATGGTGGCA 60.970 55.000 18.87 0.00 38.72 4.92
4570 4695 1.113788 GGCATGTACAATGGTGGCAT 58.886 50.000 14.01 0.00 37.14 4.40
4571 4696 2.305928 GGCATGTACAATGGTGGCATA 58.694 47.619 14.01 0.00 37.14 3.14
4572 4697 2.892852 GGCATGTACAATGGTGGCATAT 59.107 45.455 14.01 0.00 37.14 1.78
4573 4698 3.305539 GGCATGTACAATGGTGGCATATG 60.306 47.826 14.01 0.00 37.14 1.78
4574 4699 3.305539 GCATGTACAATGGTGGCATATGG 60.306 47.826 0.00 0.00 0.00 2.74
4575 4700 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
4576 4701 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
4577 4702 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
4578 4703 6.138391 TGTACAATGGTGGCATATGGATAT 57.862 37.500 4.56 0.00 0.00 1.63
4579 4704 7.264294 TGTACAATGGTGGCATATGGATATA 57.736 36.000 4.56 0.00 0.00 0.86
4580 4705 7.337938 TGTACAATGGTGGCATATGGATATAG 58.662 38.462 4.56 0.00 0.00 1.31
4581 4706 6.641161 ACAATGGTGGCATATGGATATAGA 57.359 37.500 4.56 0.00 0.00 1.98
4582 4707 7.217028 ACAATGGTGGCATATGGATATAGAT 57.783 36.000 4.56 0.00 0.00 1.98
4583 4708 7.058525 ACAATGGTGGCATATGGATATAGATG 58.941 38.462 4.56 0.00 0.00 2.90
4584 4709 5.039920 TGGTGGCATATGGATATAGATGC 57.960 43.478 4.56 0.00 0.00 3.91
4585 4710 4.723285 TGGTGGCATATGGATATAGATGCT 59.277 41.667 4.56 0.00 35.57 3.79
4586 4711 5.192321 TGGTGGCATATGGATATAGATGCTT 59.808 40.000 4.56 0.00 35.57 3.91
4587 4712 5.762218 GGTGGCATATGGATATAGATGCTTC 59.238 44.000 4.56 0.00 35.57 3.86
4588 4713 6.351711 GTGGCATATGGATATAGATGCTTCA 58.648 40.000 4.56 0.00 35.57 3.02
4589 4714 6.996879 GTGGCATATGGATATAGATGCTTCAT 59.003 38.462 4.56 0.00 35.57 2.57
4590 4715 6.996282 TGGCATATGGATATAGATGCTTCATG 59.004 38.462 4.56 0.00 35.57 3.07
4591 4716 7.147444 TGGCATATGGATATAGATGCTTCATGA 60.147 37.037 4.56 0.00 35.57 3.07
4592 4717 7.883833 GGCATATGGATATAGATGCTTCATGAT 59.116 37.037 4.56 0.00 35.57 2.45
4593 4718 9.939802 GCATATGGATATAGATGCTTCATGATA 57.060 33.333 4.56 0.00 32.80 2.15
4642 4767 2.837532 TTTTTCTCCCCAATGCAAGC 57.162 45.000 0.00 0.00 0.00 4.01
4643 4768 2.014010 TTTTCTCCCCAATGCAAGCT 57.986 45.000 0.00 0.00 0.00 3.74
4644 4769 2.897271 TTTCTCCCCAATGCAAGCTA 57.103 45.000 0.00 0.00 0.00 3.32
4645 4770 2.128771 TTCTCCCCAATGCAAGCTAC 57.871 50.000 0.00 0.00 0.00 3.58
4646 4771 1.289160 TCTCCCCAATGCAAGCTACT 58.711 50.000 0.00 0.00 0.00 2.57
4647 4772 2.477245 TCTCCCCAATGCAAGCTACTA 58.523 47.619 0.00 0.00 0.00 1.82
4648 4773 2.170607 TCTCCCCAATGCAAGCTACTAC 59.829 50.000 0.00 0.00 0.00 2.73
4649 4774 2.171448 CTCCCCAATGCAAGCTACTACT 59.829 50.000 0.00 0.00 0.00 2.57
4650 4775 3.380393 TCCCCAATGCAAGCTACTACTA 58.620 45.455 0.00 0.00 0.00 1.82
4651 4776 3.388024 TCCCCAATGCAAGCTACTACTAG 59.612 47.826 0.00 0.00 0.00 2.57
4652 4777 3.134804 CCCCAATGCAAGCTACTACTAGT 59.865 47.826 0.00 0.00 0.00 2.57
4653 4778 4.122776 CCCAATGCAAGCTACTACTAGTG 58.877 47.826 5.39 0.00 0.00 2.74
4654 4779 4.122776 CCAATGCAAGCTACTACTAGTGG 58.877 47.826 5.39 4.89 0.00 4.00
4655 4780 4.122776 CAATGCAAGCTACTACTAGTGGG 58.877 47.826 11.30 3.83 0.00 4.61
4656 4781 1.480954 TGCAAGCTACTACTAGTGGGC 59.519 52.381 11.30 5.34 0.00 5.36
4657 4782 1.202545 GCAAGCTACTACTAGTGGGCC 60.203 57.143 11.30 0.00 31.83 5.80
4658 4783 2.389715 CAAGCTACTACTAGTGGGCCT 58.610 52.381 11.30 0.89 31.83 5.19
4659 4784 2.766828 CAAGCTACTACTAGTGGGCCTT 59.233 50.000 11.30 6.80 31.83 4.35
4660 4785 3.958798 CAAGCTACTACTAGTGGGCCTTA 59.041 47.826 11.30 0.00 31.83 2.69
4661 4786 4.472690 AGCTACTACTAGTGGGCCTTAT 57.527 45.455 11.30 0.00 31.83 1.73
4662 4787 4.409187 AGCTACTACTAGTGGGCCTTATC 58.591 47.826 11.30 0.00 31.83 1.75
4663 4788 4.140994 AGCTACTACTAGTGGGCCTTATCA 60.141 45.833 11.30 0.00 31.83 2.15
4664 4789 4.587684 GCTACTACTAGTGGGCCTTATCAA 59.412 45.833 11.30 0.00 0.00 2.57
4665 4790 5.070047 GCTACTACTAGTGGGCCTTATCAAA 59.930 44.000 11.30 0.00 0.00 2.69
4666 4791 6.407752 GCTACTACTAGTGGGCCTTATCAAAA 60.408 42.308 11.30 0.00 0.00 2.44
4667 4792 6.382919 ACTACTAGTGGGCCTTATCAAAAA 57.617 37.500 11.30 0.00 0.00 1.94
4696 4821 5.869753 AAAGTGACTCTCATTACACATGC 57.130 39.130 0.00 0.00 35.97 4.06
4697 4822 4.541973 AGTGACTCTCATTACACATGCA 57.458 40.909 0.00 0.00 35.97 3.96
4698 4823 5.095145 AGTGACTCTCATTACACATGCAT 57.905 39.130 0.00 0.00 35.97 3.96
4699 4824 5.114780 AGTGACTCTCATTACACATGCATC 58.885 41.667 0.00 0.00 35.97 3.91
4700 4825 4.272018 GTGACTCTCATTACACATGCATCC 59.728 45.833 0.00 0.00 34.05 3.51
4701 4826 3.812053 GACTCTCATTACACATGCATCCC 59.188 47.826 0.00 0.00 0.00 3.85
4702 4827 3.457380 ACTCTCATTACACATGCATCCCT 59.543 43.478 0.00 0.00 0.00 4.20
4703 4828 4.063689 CTCTCATTACACATGCATCCCTC 58.936 47.826 0.00 0.00 0.00 4.30
4704 4829 3.144506 CTCATTACACATGCATCCCTCC 58.855 50.000 0.00 0.00 0.00 4.30
4705 4830 2.779430 TCATTACACATGCATCCCTCCT 59.221 45.455 0.00 0.00 0.00 3.69
4706 4831 3.144506 CATTACACATGCATCCCTCCTC 58.855 50.000 0.00 0.00 0.00 3.71
4707 4832 2.180946 TACACATGCATCCCTCCTCT 57.819 50.000 0.00 0.00 0.00 3.69
4708 4833 1.293062 ACACATGCATCCCTCCTCTT 58.707 50.000 0.00 0.00 0.00 2.85
4709 4834 1.211457 ACACATGCATCCCTCCTCTTC 59.789 52.381 0.00 0.00 0.00 2.87
4710 4835 0.467384 ACATGCATCCCTCCTCTTCG 59.533 55.000 0.00 0.00 0.00 3.79
4711 4836 0.883814 CATGCATCCCTCCTCTTCGC 60.884 60.000 0.00 0.00 0.00 4.70
4712 4837 1.053264 ATGCATCCCTCCTCTTCGCT 61.053 55.000 0.00 0.00 0.00 4.93
4713 4838 1.267574 TGCATCCCTCCTCTTCGCTT 61.268 55.000 0.00 0.00 0.00 4.68
4714 4839 0.531753 GCATCCCTCCTCTTCGCTTC 60.532 60.000 0.00 0.00 0.00 3.86
4715 4840 0.826715 CATCCCTCCTCTTCGCTTCA 59.173 55.000 0.00 0.00 0.00 3.02
4716 4841 1.208052 CATCCCTCCTCTTCGCTTCAA 59.792 52.381 0.00 0.00 0.00 2.69
4717 4842 0.608640 TCCCTCCTCTTCGCTTCAAC 59.391 55.000 0.00 0.00 0.00 3.18
4718 4843 0.610687 CCCTCCTCTTCGCTTCAACT 59.389 55.000 0.00 0.00 0.00 3.16
4719 4844 1.002544 CCCTCCTCTTCGCTTCAACTT 59.997 52.381 0.00 0.00 0.00 2.66
4720 4845 2.551071 CCCTCCTCTTCGCTTCAACTTT 60.551 50.000 0.00 0.00 0.00 2.66
4721 4846 3.142174 CCTCCTCTTCGCTTCAACTTTT 58.858 45.455 0.00 0.00 0.00 2.27
4722 4847 3.565902 CCTCCTCTTCGCTTCAACTTTTT 59.434 43.478 0.00 0.00 0.00 1.94
4723 4848 4.319839 CCTCCTCTTCGCTTCAACTTTTTC 60.320 45.833 0.00 0.00 0.00 2.29
4724 4849 3.564225 TCCTCTTCGCTTCAACTTTTTCC 59.436 43.478 0.00 0.00 0.00 3.13
4725 4850 3.315191 CCTCTTCGCTTCAACTTTTTCCA 59.685 43.478 0.00 0.00 0.00 3.53
4726 4851 4.202010 CCTCTTCGCTTCAACTTTTTCCAA 60.202 41.667 0.00 0.00 0.00 3.53
4727 4852 4.668289 TCTTCGCTTCAACTTTTTCCAAC 58.332 39.130 0.00 0.00 0.00 3.77
4728 4853 4.398044 TCTTCGCTTCAACTTTTTCCAACT 59.602 37.500 0.00 0.00 0.00 3.16
4729 4854 4.712122 TCGCTTCAACTTTTTCCAACTT 57.288 36.364 0.00 0.00 0.00 2.66
4730 4855 5.066968 TCGCTTCAACTTTTTCCAACTTT 57.933 34.783 0.00 0.00 0.00 2.66
4731 4856 6.197364 TCGCTTCAACTTTTTCCAACTTTA 57.803 33.333 0.00 0.00 0.00 1.85
4732 4857 6.801575 TCGCTTCAACTTTTTCCAACTTTAT 58.198 32.000 0.00 0.00 0.00 1.40
4733 4858 6.695278 TCGCTTCAACTTTTTCCAACTTTATG 59.305 34.615 0.00 0.00 0.00 1.90
4734 4859 6.562086 CGCTTCAACTTTTTCCAACTTTATGC 60.562 38.462 0.00 0.00 0.00 3.14
4735 4860 6.257630 GCTTCAACTTTTTCCAACTTTATGCA 59.742 34.615 0.00 0.00 0.00 3.96
4736 4861 7.041848 GCTTCAACTTTTTCCAACTTTATGCAT 60.042 33.333 3.79 3.79 0.00 3.96
4737 4862 7.945033 TCAACTTTTTCCAACTTTATGCATC 57.055 32.000 0.19 0.00 0.00 3.91
4738 4863 6.640499 TCAACTTTTTCCAACTTTATGCATCG 59.360 34.615 0.19 0.00 0.00 3.84
4739 4864 5.469479 ACTTTTTCCAACTTTATGCATCGG 58.531 37.500 0.19 0.00 0.00 4.18
4740 4865 5.242838 ACTTTTTCCAACTTTATGCATCGGA 59.757 36.000 0.19 0.00 0.00 4.55
4741 4866 4.695217 TTTCCAACTTTATGCATCGGAC 57.305 40.909 0.19 0.00 0.00 4.79
4742 4867 2.639065 TCCAACTTTATGCATCGGACC 58.361 47.619 0.19 0.00 0.00 4.46
4743 4868 2.026729 TCCAACTTTATGCATCGGACCA 60.027 45.455 0.19 0.00 0.00 4.02
4744 4869 2.097466 CCAACTTTATGCATCGGACCAC 59.903 50.000 0.19 0.00 0.00 4.16
4745 4870 2.746904 CAACTTTATGCATCGGACCACA 59.253 45.455 0.19 0.00 0.00 4.17
4746 4871 3.281727 ACTTTATGCATCGGACCACAT 57.718 42.857 0.19 0.00 0.00 3.21
4747 4872 3.620488 ACTTTATGCATCGGACCACATT 58.380 40.909 0.19 0.00 0.00 2.71
4748 4873 4.016444 ACTTTATGCATCGGACCACATTT 58.984 39.130 0.19 0.00 0.00 2.32
4749 4874 4.462483 ACTTTATGCATCGGACCACATTTT 59.538 37.500 0.19 0.00 0.00 1.82
4750 4875 5.047377 ACTTTATGCATCGGACCACATTTTT 60.047 36.000 0.19 0.00 0.00 1.94
4751 4876 3.508744 ATGCATCGGACCACATTTTTC 57.491 42.857 0.00 0.00 0.00 2.29
4752 4877 2.513753 TGCATCGGACCACATTTTTCT 58.486 42.857 0.00 0.00 0.00 2.52
4753 4878 2.487762 TGCATCGGACCACATTTTTCTC 59.512 45.455 0.00 0.00 0.00 2.87
4754 4879 2.749621 GCATCGGACCACATTTTTCTCT 59.250 45.455 0.00 0.00 0.00 3.10
4755 4880 3.181506 GCATCGGACCACATTTTTCTCTC 60.182 47.826 0.00 0.00 0.00 3.20
4756 4881 4.256920 CATCGGACCACATTTTTCTCTCT 58.743 43.478 0.00 0.00 0.00 3.10
4757 4882 5.419542 CATCGGACCACATTTTTCTCTCTA 58.580 41.667 0.00 0.00 0.00 2.43
4758 4883 5.477607 TCGGACCACATTTTTCTCTCTAA 57.522 39.130 0.00 0.00 0.00 2.10
4759 4884 5.479306 TCGGACCACATTTTTCTCTCTAAG 58.521 41.667 0.00 0.00 0.00 2.18
4760 4885 4.093556 CGGACCACATTTTTCTCTCTAAGC 59.906 45.833 0.00 0.00 0.00 3.09
4761 4886 5.003804 GGACCACATTTTTCTCTCTAAGCA 58.996 41.667 0.00 0.00 0.00 3.91
4762 4887 5.106515 GGACCACATTTTTCTCTCTAAGCAC 60.107 44.000 0.00 0.00 0.00 4.40
4763 4888 5.625150 ACCACATTTTTCTCTCTAAGCACT 58.375 37.500 0.00 0.00 0.00 4.40
4764 4889 5.703130 ACCACATTTTTCTCTCTAAGCACTC 59.297 40.000 0.00 0.00 0.00 3.51
4765 4890 5.163913 CCACATTTTTCTCTCTAAGCACTCG 60.164 44.000 0.00 0.00 0.00 4.18
4766 4891 5.406780 CACATTTTTCTCTCTAAGCACTCGT 59.593 40.000 0.00 0.00 0.00 4.18
4767 4892 5.635700 ACATTTTTCTCTCTAAGCACTCGTC 59.364 40.000 0.00 0.00 0.00 4.20
4768 4893 5.455056 TTTTTCTCTCTAAGCACTCGTCT 57.545 39.130 0.00 0.00 0.00 4.18
4769 4894 5.455056 TTTTCTCTCTAAGCACTCGTCTT 57.545 39.130 0.00 0.00 0.00 3.01
4770 4895 4.688511 TTCTCTCTAAGCACTCGTCTTC 57.311 45.455 0.00 0.00 0.00 2.87
4771 4896 3.945346 TCTCTCTAAGCACTCGTCTTCT 58.055 45.455 0.00 0.00 0.00 2.85
4772 4897 3.687212 TCTCTCTAAGCACTCGTCTTCTG 59.313 47.826 0.00 0.00 0.00 3.02
4773 4898 2.750166 TCTCTAAGCACTCGTCTTCTGG 59.250 50.000 0.00 0.00 0.00 3.86
4774 4899 2.750166 CTCTAAGCACTCGTCTTCTGGA 59.250 50.000 0.00 0.00 0.00 3.86
4775 4900 2.750166 TCTAAGCACTCGTCTTCTGGAG 59.250 50.000 0.00 0.00 36.36 3.86
4776 4901 1.621992 AAGCACTCGTCTTCTGGAGA 58.378 50.000 0.00 0.00 34.40 3.71
4777 4902 1.173043 AGCACTCGTCTTCTGGAGAG 58.827 55.000 0.00 0.00 34.31 3.20
4778 4903 0.172352 GCACTCGTCTTCTGGAGAGG 59.828 60.000 0.00 0.00 40.74 3.69
4779 4904 1.827681 CACTCGTCTTCTGGAGAGGA 58.172 55.000 8.02 8.02 44.62 3.71
4780 4905 2.374184 CACTCGTCTTCTGGAGAGGAT 58.626 52.381 8.69 0.00 45.39 3.24
4781 4906 2.357637 CACTCGTCTTCTGGAGAGGATC 59.642 54.545 8.69 0.00 45.39 3.36
4782 4907 1.953686 CTCGTCTTCTGGAGAGGATCC 59.046 57.143 8.69 2.48 45.39 3.36
4789 4914 3.884318 GGAGAGGATCCTGCTCCC 58.116 66.667 31.03 19.34 45.64 4.30
4790 4915 1.841103 GGAGAGGATCCTGCTCCCC 60.841 68.421 31.03 18.63 45.64 4.81
4791 4916 1.841103 GAGAGGATCCTGCTCCCCC 60.841 68.421 22.02 2.07 35.21 5.40
4792 4917 2.040464 GAGGATCCTGCTCCCCCA 60.040 66.667 22.02 0.00 35.79 4.96
4793 4918 1.463018 GAGGATCCTGCTCCCCCAT 60.463 63.158 22.02 0.00 35.79 4.00
4794 4919 1.463018 AGGATCCTGCTCCCCCATC 60.463 63.158 15.29 0.00 35.79 3.51
4795 4920 2.533463 GGATCCTGCTCCCCCATCC 61.533 68.421 3.84 0.00 0.00 3.51
4796 4921 2.851102 ATCCTGCTCCCCCATCCG 60.851 66.667 0.00 0.00 0.00 4.18
4797 4922 3.410788 ATCCTGCTCCCCCATCCGA 62.411 63.158 0.00 0.00 0.00 4.55
4798 4923 2.914734 ATCCTGCTCCCCCATCCGAA 62.915 60.000 0.00 0.00 0.00 4.30
4799 4924 2.190578 CTGCTCCCCCATCCGAAC 59.809 66.667 0.00 0.00 0.00 3.95
4800 4925 3.406595 CTGCTCCCCCATCCGAACC 62.407 68.421 0.00 0.00 0.00 3.62
4801 4926 3.090532 GCTCCCCCATCCGAACCT 61.091 66.667 0.00 0.00 0.00 3.50
4802 4927 1.764854 GCTCCCCCATCCGAACCTA 60.765 63.158 0.00 0.00 0.00 3.08
4803 4928 2.041206 GCTCCCCCATCCGAACCTAC 62.041 65.000 0.00 0.00 0.00 3.18
4804 4929 0.398664 CTCCCCCATCCGAACCTACT 60.399 60.000 0.00 0.00 0.00 2.57
4805 4930 0.043637 TCCCCCATCCGAACCTACTT 59.956 55.000 0.00 0.00 0.00 2.24
4806 4931 0.916809 CCCCCATCCGAACCTACTTT 59.083 55.000 0.00 0.00 0.00 2.66
4807 4932 1.283905 CCCCCATCCGAACCTACTTTT 59.716 52.381 0.00 0.00 0.00 2.27
4808 4933 2.291346 CCCCCATCCGAACCTACTTTTT 60.291 50.000 0.00 0.00 0.00 1.94
4809 4934 3.014623 CCCCATCCGAACCTACTTTTTC 58.985 50.000 0.00 0.00 0.00 2.29
4810 4935 3.308188 CCCCATCCGAACCTACTTTTTCT 60.308 47.826 0.00 0.00 0.00 2.52
4811 4936 3.689649 CCCATCCGAACCTACTTTTTCTG 59.310 47.826 0.00 0.00 0.00 3.02
4812 4937 4.324267 CCATCCGAACCTACTTTTTCTGT 58.676 43.478 0.00 0.00 0.00 3.41
4813 4938 4.392138 CCATCCGAACCTACTTTTTCTGTC 59.608 45.833 0.00 0.00 0.00 3.51
4814 4939 4.675976 TCCGAACCTACTTTTTCTGTCA 57.324 40.909 0.00 0.00 0.00 3.58
4815 4940 5.223449 TCCGAACCTACTTTTTCTGTCAT 57.777 39.130 0.00 0.00 0.00 3.06
4816 4941 5.235516 TCCGAACCTACTTTTTCTGTCATC 58.764 41.667 0.00 0.00 0.00 2.92
4817 4942 4.392138 CCGAACCTACTTTTTCTGTCATCC 59.608 45.833 0.00 0.00 0.00 3.51
4818 4943 4.091509 CGAACCTACTTTTTCTGTCATCCG 59.908 45.833 0.00 0.00 0.00 4.18
4819 4944 4.884668 ACCTACTTTTTCTGTCATCCGA 57.115 40.909 0.00 0.00 0.00 4.55
4820 4945 5.422214 ACCTACTTTTTCTGTCATCCGAT 57.578 39.130 0.00 0.00 0.00 4.18
4821 4946 5.420409 ACCTACTTTTTCTGTCATCCGATC 58.580 41.667 0.00 0.00 0.00 3.69
4822 4947 4.811557 CCTACTTTTTCTGTCATCCGATCC 59.188 45.833 0.00 0.00 0.00 3.36
4823 4948 4.559862 ACTTTTTCTGTCATCCGATCCT 57.440 40.909 0.00 0.00 0.00 3.24
4824 4949 5.677319 ACTTTTTCTGTCATCCGATCCTA 57.323 39.130 0.00 0.00 0.00 2.94
4825 4950 6.240549 ACTTTTTCTGTCATCCGATCCTAT 57.759 37.500 0.00 0.00 0.00 2.57
4826 4951 7.361457 ACTTTTTCTGTCATCCGATCCTATA 57.639 36.000 0.00 0.00 0.00 1.31
4827 4952 7.967908 ACTTTTTCTGTCATCCGATCCTATAT 58.032 34.615 0.00 0.00 0.00 0.86
4828 4953 7.875041 ACTTTTTCTGTCATCCGATCCTATATG 59.125 37.037 0.00 0.00 0.00 1.78
4829 4954 5.921962 TTCTGTCATCCGATCCTATATGG 57.078 43.478 0.00 0.00 37.10 2.74
4830 4955 3.701542 TCTGTCATCCGATCCTATATGGC 59.298 47.826 0.00 0.00 35.26 4.40
4831 4956 3.440127 TGTCATCCGATCCTATATGGCA 58.560 45.455 0.00 0.00 31.88 4.92
4832 4957 4.033009 TGTCATCCGATCCTATATGGCAT 58.967 43.478 4.88 4.88 29.48 4.40
4833 4958 4.141869 TGTCATCCGATCCTATATGGCATG 60.142 45.833 10.98 0.00 29.48 4.06
4834 4959 4.033009 TCATCCGATCCTATATGGCATGT 58.967 43.478 10.98 6.03 35.26 3.21
4835 4960 3.893326 TCCGATCCTATATGGCATGTG 57.107 47.619 10.98 0.00 35.26 3.21
4836 4961 2.501316 TCCGATCCTATATGGCATGTGG 59.499 50.000 10.98 5.30 35.26 4.17
4837 4962 2.420547 CCGATCCTATATGGCATGTGGG 60.421 54.545 18.66 18.66 35.26 4.61
4838 4963 2.420547 CGATCCTATATGGCATGTGGGG 60.421 54.545 23.01 16.24 35.26 4.96
4839 4964 0.698238 TCCTATATGGCATGTGGGGC 59.302 55.000 23.01 0.00 35.26 5.80
4844 4969 2.362760 TGGCATGTGGGGCATCAC 60.363 61.111 0.00 3.68 38.55 3.06
4845 4970 3.149648 GGCATGTGGGGCATCACC 61.150 66.667 7.56 0.00 35.19 4.02
4854 4979 3.096495 GGCATCACCCTGGGGCTA 61.096 66.667 18.88 1.65 39.32 3.93
4855 4980 2.464403 GGCATCACCCTGGGGCTAT 61.464 63.158 18.88 4.24 39.32 2.97
4856 4981 1.228367 GCATCACCCTGGGGCTATG 60.228 63.158 18.88 17.03 39.32 2.23
4857 4982 1.228367 CATCACCCTGGGGCTATGC 60.228 63.158 18.88 0.00 39.32 3.14
4858 4983 1.697394 ATCACCCTGGGGCTATGCA 60.697 57.895 18.88 0.00 39.32 3.96
4859 4984 1.070127 ATCACCCTGGGGCTATGCAT 61.070 55.000 18.88 3.79 39.32 3.96
4860 4985 1.231068 CACCCTGGGGCTATGCATT 59.769 57.895 18.88 0.00 39.32 3.56
4861 4986 1.111116 CACCCTGGGGCTATGCATTG 61.111 60.000 18.88 3.55 39.32 2.82
4862 4987 1.532316 CCCTGGGGCTATGCATTGG 60.532 63.158 3.54 0.00 0.00 3.16
4863 4988 2.205152 CCTGGGGCTATGCATTGGC 61.205 63.158 23.20 23.20 41.68 4.52
4864 4989 2.123338 TGGGGCTATGCATTGGCC 60.123 61.111 35.14 35.14 45.04 5.36
4865 4990 2.123338 GGGGCTATGCATTGGCCA 60.123 61.111 39.75 0.00 46.96 5.36
4866 4991 1.534717 GGGGCTATGCATTGGCCAT 60.535 57.895 39.75 7.48 46.96 4.40
4867 4992 1.669440 GGGCTATGCATTGGCCATG 59.331 57.895 36.79 8.63 46.87 3.66
4878 5003 2.182537 GGCCATGCCTTCAAAGCG 59.817 61.111 0.00 0.00 46.69 4.68
4879 5004 2.639327 GGCCATGCCTTCAAAGCGT 61.639 57.895 0.00 0.00 46.69 5.07
4880 5005 1.444895 GCCATGCCTTCAAAGCGTG 60.445 57.895 0.00 0.00 45.03 5.34
4881 5006 4.874534 CATGCCTTCAAAGCGTGG 57.125 55.556 0.00 0.00 42.36 4.94
4882 5007 1.213537 CATGCCTTCAAAGCGTGGG 59.786 57.895 0.00 0.00 42.36 4.61
4883 5008 1.228552 ATGCCTTCAAAGCGTGGGT 60.229 52.632 0.00 0.00 0.00 4.51
4884 5009 1.526575 ATGCCTTCAAAGCGTGGGTG 61.527 55.000 0.00 0.00 0.00 4.61
4885 5010 2.644992 CCTTCAAAGCGTGGGTGC 59.355 61.111 0.00 0.00 0.00 5.01
4886 5011 2.252260 CTTCAAAGCGTGGGTGCG 59.748 61.111 0.00 0.00 40.67 5.34
4887 5012 2.515057 TTCAAAGCGTGGGTGCGT 60.515 55.556 0.00 0.00 40.67 5.24
4888 5013 2.443957 CTTCAAAGCGTGGGTGCGTC 62.444 60.000 0.00 0.00 40.67 5.19
4889 5014 4.368808 CAAAGCGTGGGTGCGTCG 62.369 66.667 0.00 0.00 40.67 5.12
4897 5022 3.782443 GGGTGCGTCGGGAAGGAT 61.782 66.667 0.00 0.00 0.00 3.24
4898 5023 2.428925 GGGTGCGTCGGGAAGGATA 61.429 63.158 0.00 0.00 0.00 2.59
4899 5024 1.518774 GGTGCGTCGGGAAGGATAA 59.481 57.895 0.00 0.00 0.00 1.75
4900 5025 0.106149 GGTGCGTCGGGAAGGATAAT 59.894 55.000 0.00 0.00 0.00 1.28
4901 5026 1.474498 GGTGCGTCGGGAAGGATAATT 60.474 52.381 0.00 0.00 0.00 1.40
4902 5027 1.865340 GTGCGTCGGGAAGGATAATTC 59.135 52.381 0.00 0.00 0.00 2.17
4903 5028 1.760613 TGCGTCGGGAAGGATAATTCT 59.239 47.619 0.00 0.00 0.00 2.40
4904 5029 2.169769 TGCGTCGGGAAGGATAATTCTT 59.830 45.455 0.00 0.00 0.00 2.52
4905 5030 3.203716 GCGTCGGGAAGGATAATTCTTT 58.796 45.455 0.00 0.00 0.00 2.52
4906 5031 3.626217 GCGTCGGGAAGGATAATTCTTTT 59.374 43.478 0.00 0.00 0.00 2.27
4907 5032 4.495844 GCGTCGGGAAGGATAATTCTTTTG 60.496 45.833 0.00 0.00 0.00 2.44
4908 5033 4.873827 CGTCGGGAAGGATAATTCTTTTGA 59.126 41.667 0.00 0.00 0.00 2.69
4909 5034 5.353123 CGTCGGGAAGGATAATTCTTTTGAA 59.647 40.000 0.00 0.00 43.30 2.69
4910 5035 6.456988 CGTCGGGAAGGATAATTCTTTTGAAG 60.457 42.308 0.00 0.00 42.30 3.02
4911 5036 6.374613 GTCGGGAAGGATAATTCTTTTGAAGT 59.625 38.462 0.00 0.00 42.30 3.01
4912 5037 6.946009 TCGGGAAGGATAATTCTTTTGAAGTT 59.054 34.615 0.00 0.00 42.30 2.66
4913 5038 7.029563 CGGGAAGGATAATTCTTTTGAAGTTG 58.970 38.462 0.00 0.00 42.30 3.16
4914 5039 7.309194 CGGGAAGGATAATTCTTTTGAAGTTGT 60.309 37.037 0.00 0.00 42.30 3.32
4915 5040 8.367911 GGGAAGGATAATTCTTTTGAAGTTGTT 58.632 33.333 0.00 0.00 42.30 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.627550 GCAAGAACCGCCTCTTCGAC 61.628 60.000 0.00 0.00 33.25 4.20
120 121 1.694169 CCACCAGCACTCCCCCTAT 60.694 63.158 0.00 0.00 0.00 2.57
300 301 0.983378 CCCCCAAGATCCGTCTCCTT 60.983 60.000 0.00 0.00 32.15 3.36
802 803 4.760047 CCTTGGCCACGTCTCCGG 62.760 72.222 3.88 0.00 38.78 5.14
1102 1108 4.785453 CACCAGCTTCGGGGGAGC 62.785 72.222 0.00 0.00 40.43 4.70
1189 1200 2.787994 CAAAGACAAGCACTGGAGGAT 58.212 47.619 0.00 0.00 0.00 3.24
1249 1260 1.871126 GCAGTCCAGCCTTGGCTTTC 61.871 60.000 11.99 5.53 44.63 2.62
1385 1400 1.883926 ACCATTGGCTAAACGAACCAC 59.116 47.619 1.54 0.00 31.83 4.16
1389 1404 3.619483 CGATACACCATTGGCTAAACGAA 59.381 43.478 1.54 0.00 0.00 3.85
1399 1414 6.432936 CCAATTGAATCTCGATACACCATTG 58.567 40.000 7.12 0.00 0.00 2.82
1410 1425 7.095607 GCAGTAGTATAACCCAATTGAATCTCG 60.096 40.741 7.12 0.00 0.00 4.04
1447 1466 4.648762 TGAATCAACATTGTGGGAACTGTT 59.351 37.500 0.00 0.00 32.27 3.16
1455 1474 5.632244 TCTGTCATGAATCAACATTGTGG 57.368 39.130 0.00 0.00 0.00 4.17
1473 1492 7.014615 ACTGAGTGCAATTTAAGGAAATTCTGT 59.985 33.333 0.00 0.00 42.22 3.41
1481 1500 3.826157 CCCAACTGAGTGCAATTTAAGGA 59.174 43.478 0.00 0.00 0.00 3.36
1489 1508 3.290948 AAACTACCCAACTGAGTGCAA 57.709 42.857 0.00 0.00 0.00 4.08
1494 1513 4.631813 GCAGATGTAAACTACCCAACTGAG 59.368 45.833 0.00 0.00 0.00 3.35
1556 1575 6.959639 ACTTTAGAGTGGCATTTTTCTCAA 57.040 33.333 5.06 0.00 33.99 3.02
1727 1746 0.108615 ATTCTGTGAGCGAGTTCCCG 60.109 55.000 0.00 0.00 0.00 5.14
1742 1761 4.331168 GTCGAAAGATTAGCAGCACATTCT 59.669 41.667 0.00 0.00 45.19 2.40
1775 1794 9.280174 CAAAGGTATTTTACTTTACTGGTCTCA 57.720 33.333 0.00 0.00 35.32 3.27
2058 2078 3.264450 CCATTCCAGGTAAGACTCCAAGT 59.736 47.826 0.00 0.00 0.00 3.16
2208 2228 0.534412 CCCTCTCAGTAGCACCAGTG 59.466 60.000 0.00 0.00 0.00 3.66
2255 2275 2.507058 TCCTGAGTGAATGCAAGGCTAT 59.493 45.455 0.00 0.00 0.00 2.97
2370 2390 2.092211 CAGTTTCAGTAACGATGGCGAC 59.908 50.000 0.00 0.00 41.78 5.19
2373 2393 4.946784 AATCAGTTTCAGTAACGATGGC 57.053 40.909 0.00 0.00 41.78 4.40
2379 2399 6.907212 CGGCATCATAAATCAGTTTCAGTAAC 59.093 38.462 0.00 0.00 36.99 2.50
2414 2434 5.464030 TCTTACTTCACCAGTTCTACCAC 57.536 43.478 0.00 0.00 36.88 4.16
2510 2530 5.359576 TGAATATGCATCCACTGGGTAAAAC 59.640 40.000 0.19 0.00 34.93 2.43
2596 2616 1.135575 CGCAAGTTTTGAGGGATCAGC 60.136 52.381 0.00 0.00 0.00 4.26
2652 2672 0.461961 ATCTTAGCGCAGAGGACACC 59.538 55.000 11.47 0.00 0.00 4.16
2730 2750 1.425066 TGGTGCATTTCAGAAGGGTCT 59.575 47.619 0.00 0.00 32.85 3.85
2800 2820 2.673368 CCGCAGAAGAATCAGTTGGTAC 59.327 50.000 0.00 0.00 0.00 3.34
2820 2840 0.393808 TTAACGCTCTGCCCCAATCC 60.394 55.000 0.00 0.00 0.00 3.01
3241 3268 1.807142 GTCACTTGCTAGGGAAACTGC 59.193 52.381 0.38 0.00 35.03 4.40
3321 3348 7.264221 TGCTTAAAGCTTGATTTCAAACTGAA 58.736 30.769 0.00 0.00 42.97 3.02
3327 3354 7.042797 AGAACTGCTTAAAGCTTGATTTCAA 57.957 32.000 0.00 0.00 42.97 2.69
3350 3377 1.135689 GGCATGCACCAAACGAACTAG 60.136 52.381 21.36 0.00 0.00 2.57
3356 3383 0.940519 CAAGTGGCATGCACCAAACG 60.941 55.000 21.36 0.00 42.70 3.60
3378 3405 1.032014 TGAGAAACAGTTGGCTTGGC 58.968 50.000 0.00 0.00 0.00 4.52
3441 3468 2.592102 ATCAGCACACACAGGGAAAT 57.408 45.000 0.00 0.00 0.00 2.17
3445 3544 0.962356 GGGAATCAGCACACACAGGG 60.962 60.000 0.00 0.00 0.00 4.45
3478 3577 5.784177 TCTCACAGTTTGTATGGAGAAGTC 58.216 41.667 0.00 0.00 0.00 3.01
3540 3639 6.525976 GCATCATGTTGTTTAGAAGCTTCTTC 59.474 38.462 32.70 22.09 38.70 2.87
3668 3768 2.987232 GAAGGGTTCTTCGCCACTATT 58.013 47.619 0.00 0.00 39.82 1.73
3685 3785 8.896744 TCATATACTCTTGCAAAAATCTGGAAG 58.103 33.333 0.00 0.00 43.85 3.46
3741 3859 4.634004 CAGGTCGGTTTATTATCAGCAACA 59.366 41.667 0.00 0.00 0.00 3.33
3755 3873 3.581332 TCAGATAAAGGAACAGGTCGGTT 59.419 43.478 0.00 0.00 0.00 4.44
3954 4073 1.264288 GTTTGGTTTCTCGAGCCTGTG 59.736 52.381 7.81 0.00 0.00 3.66
3985 4104 0.738063 TACATTACGGTGCTGCACGG 60.738 55.000 30.81 30.81 39.91 4.94
3987 4106 2.413634 GGTTTACATTACGGTGCTGCAC 60.414 50.000 24.02 24.02 0.00 4.57
3988 4107 1.807742 GGTTTACATTACGGTGCTGCA 59.192 47.619 0.00 0.00 0.00 4.41
3989 4108 1.131693 GGGTTTACATTACGGTGCTGC 59.868 52.381 0.00 0.00 0.00 5.25
3996 4115 5.796935 CGGTCTATATCGGGTTTACATTACG 59.203 44.000 0.00 0.00 0.00 3.18
4013 4132 1.762957 CATCACCAGGAACCGGTCTAT 59.237 52.381 8.04 0.00 33.25 1.98
4033 4152 2.548057 TGGAAAAACGATGCTGACAGAC 59.452 45.455 6.65 0.00 0.00 3.51
4036 4155 4.582701 AAATGGAAAAACGATGCTGACA 57.417 36.364 0.00 0.00 0.00 3.58
4041 4160 3.494251 ACAGCAAAATGGAAAAACGATGC 59.506 39.130 0.00 0.00 0.00 3.91
4114 4233 1.135199 CAGGCATTTCATGTGGACTGC 60.135 52.381 0.00 0.00 34.95 4.40
4116 4235 2.306805 TCTCAGGCATTTCATGTGGACT 59.693 45.455 0.00 0.00 0.00 3.85
4154 4273 2.529136 CCCATCCCCGATAGCCCA 60.529 66.667 0.00 0.00 0.00 5.36
4174 4293 1.331756 GCAATGGTACGATGCCAAGAG 59.668 52.381 5.19 0.00 39.72 2.85
4192 4311 3.758023 CCGCCCAATAATCATCATAAGCA 59.242 43.478 0.00 0.00 0.00 3.91
4197 4316 2.517959 CACCCGCCCAATAATCATCAT 58.482 47.619 0.00 0.00 0.00 2.45
4198 4317 1.478471 CCACCCGCCCAATAATCATCA 60.478 52.381 0.00 0.00 0.00 3.07
4199 4318 1.202879 TCCACCCGCCCAATAATCATC 60.203 52.381 0.00 0.00 0.00 2.92
4216 4335 1.227823 CCAACACTCACGCCTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
4338 4460 4.748679 ACGCCTGTACGACGACGC 62.749 66.667 7.30 0.00 43.96 5.19
4345 4467 2.803670 CCGTGTCACGCCTGTACG 60.804 66.667 20.01 0.43 40.91 3.67
4346 4468 2.431942 CCCGTGTCACGCCTGTAC 60.432 66.667 20.01 0.00 40.91 2.90
4347 4469 3.687102 CCCCGTGTCACGCCTGTA 61.687 66.667 20.01 0.00 40.91 2.74
4361 4483 4.530857 CACCGCCAGATCGTCCCC 62.531 72.222 0.00 0.00 0.00 4.81
4386 4508 0.466372 AGACGGGATGCGATCTCTCA 60.466 55.000 0.00 0.00 0.00 3.27
4402 4524 1.718757 GGCGGCATCACCATGAAGAC 61.719 60.000 3.07 0.00 39.03 3.01
4412 4534 1.998444 AAGGATCCATGGCGGCATCA 61.998 55.000 23.19 12.12 33.14 3.07
4424 4546 0.466124 CCGTGAGAAGGGAAGGATCC 59.534 60.000 2.48 2.48 45.77 3.36
4440 4562 2.277084 GCAGTACCGATTGATTTCCGT 58.723 47.619 0.00 0.00 0.00 4.69
4501 4626 4.793071 TGCGTGTTGTCCTAATGAAATTG 58.207 39.130 0.00 0.00 36.99 2.32
4506 4631 3.880490 ACTTTTGCGTGTTGTCCTAATGA 59.120 39.130 0.00 0.00 0.00 2.57
4509 4634 2.356382 CCACTTTTGCGTGTTGTCCTAA 59.644 45.455 0.00 0.00 33.07 2.69
4534 4659 1.003580 TGCCCTGAGTGCCTAAAAGAG 59.996 52.381 0.00 0.00 0.00 2.85
4549 4674 0.684153 GCCACCATTGTACATGCCCT 60.684 55.000 0.00 0.00 0.00 5.19
4550 4675 0.969917 TGCCACCATTGTACATGCCC 60.970 55.000 0.00 0.00 0.00 5.36
4553 4678 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
4554 4679 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
4555 4680 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
4556 4681 7.564793 TCTATATCCATATGCCACCATTGTAC 58.435 38.462 0.00 0.00 32.85 2.90
4557 4682 7.747809 TCTATATCCATATGCCACCATTGTA 57.252 36.000 0.00 0.00 32.85 2.41
4558 4683 6.641161 TCTATATCCATATGCCACCATTGT 57.359 37.500 0.00 0.00 32.85 2.71
4559 4684 6.016527 GCATCTATATCCATATGCCACCATTG 60.017 42.308 0.00 0.00 39.01 2.82
4560 4685 6.066690 GCATCTATATCCATATGCCACCATT 58.933 40.000 0.00 0.00 39.01 3.16
4561 4686 5.371769 AGCATCTATATCCATATGCCACCAT 59.628 40.000 0.00 0.00 44.57 3.55
4562 4687 4.723285 AGCATCTATATCCATATGCCACCA 59.277 41.667 0.00 0.00 44.57 4.17
4563 4688 5.301835 AGCATCTATATCCATATGCCACC 57.698 43.478 0.00 0.00 44.57 4.61
4564 4689 6.351711 TGAAGCATCTATATCCATATGCCAC 58.648 40.000 0.00 0.00 44.57 5.01
4565 4690 6.564557 TGAAGCATCTATATCCATATGCCA 57.435 37.500 0.00 0.00 44.57 4.92
4566 4691 7.222161 TCATGAAGCATCTATATCCATATGCC 58.778 38.462 0.00 0.00 44.57 4.40
4567 4692 8.850007 ATCATGAAGCATCTATATCCATATGC 57.150 34.615 0.00 0.00 43.97 3.14
4623 4748 2.328319 AGCTTGCATTGGGGAGAAAAA 58.672 42.857 0.00 0.00 0.00 1.94
4624 4749 2.014010 AGCTTGCATTGGGGAGAAAA 57.986 45.000 0.00 0.00 0.00 2.29
4625 4750 2.041620 AGTAGCTTGCATTGGGGAGAAA 59.958 45.455 0.00 0.00 0.00 2.52
4626 4751 1.635487 AGTAGCTTGCATTGGGGAGAA 59.365 47.619 0.00 0.00 0.00 2.87
4627 4752 1.289160 AGTAGCTTGCATTGGGGAGA 58.711 50.000 0.00 0.00 0.00 3.71
4628 4753 2.171448 AGTAGTAGCTTGCATTGGGGAG 59.829 50.000 0.00 0.00 0.00 4.30
4629 4754 2.196595 AGTAGTAGCTTGCATTGGGGA 58.803 47.619 0.00 0.00 0.00 4.81
4630 4755 2.717639 AGTAGTAGCTTGCATTGGGG 57.282 50.000 0.00 0.00 0.00 4.96
4631 4756 4.122776 CACTAGTAGTAGCTTGCATTGGG 58.877 47.826 1.57 0.00 0.00 4.12
4632 4757 4.122776 CCACTAGTAGTAGCTTGCATTGG 58.877 47.826 1.57 0.00 0.00 3.16
4633 4758 4.122776 CCCACTAGTAGTAGCTTGCATTG 58.877 47.826 1.57 0.00 0.00 2.82
4634 4759 3.432326 GCCCACTAGTAGTAGCTTGCATT 60.432 47.826 14.39 0.00 0.00 3.56
4635 4760 2.103263 GCCCACTAGTAGTAGCTTGCAT 59.897 50.000 14.39 0.00 0.00 3.96
4636 4761 1.480954 GCCCACTAGTAGTAGCTTGCA 59.519 52.381 14.39 0.00 0.00 4.08
4637 4762 1.202545 GGCCCACTAGTAGTAGCTTGC 60.203 57.143 18.83 10.58 30.14 4.01
4638 4763 2.389715 AGGCCCACTAGTAGTAGCTTG 58.610 52.381 18.83 2.08 30.14 4.01
4639 4764 2.850695 AGGCCCACTAGTAGTAGCTT 57.149 50.000 18.83 11.98 30.14 3.74
4640 4765 2.850695 AAGGCCCACTAGTAGTAGCT 57.149 50.000 18.83 0.00 30.14 3.32
4641 4766 4.150359 TGATAAGGCCCACTAGTAGTAGC 58.850 47.826 13.62 13.62 0.00 3.58
4642 4767 6.726490 TTTGATAAGGCCCACTAGTAGTAG 57.274 41.667 1.57 2.87 0.00 2.57
4643 4768 7.499200 TTTTTGATAAGGCCCACTAGTAGTA 57.501 36.000 1.57 0.00 0.00 1.82
4644 4769 6.382919 TTTTTGATAAGGCCCACTAGTAGT 57.617 37.500 0.00 0.00 0.00 2.73
4670 4795 8.454106 GCATGTGTAATGAGAGTCACTTTTTAT 58.546 33.333 0.00 0.00 0.00 1.40
4671 4796 7.443879 TGCATGTGTAATGAGAGTCACTTTTTA 59.556 33.333 0.00 0.00 0.00 1.52
4672 4797 6.262944 TGCATGTGTAATGAGAGTCACTTTTT 59.737 34.615 0.00 0.00 0.00 1.94
4673 4798 5.764686 TGCATGTGTAATGAGAGTCACTTTT 59.235 36.000 0.00 0.00 0.00 2.27
4674 4799 5.308014 TGCATGTGTAATGAGAGTCACTTT 58.692 37.500 0.00 0.00 0.00 2.66
4675 4800 4.898320 TGCATGTGTAATGAGAGTCACTT 58.102 39.130 0.00 0.00 0.00 3.16
4676 4801 4.541973 TGCATGTGTAATGAGAGTCACT 57.458 40.909 0.00 0.00 0.00 3.41
4677 4802 4.272018 GGATGCATGTGTAATGAGAGTCAC 59.728 45.833 2.46 0.00 0.00 3.67
4678 4803 4.445453 GGATGCATGTGTAATGAGAGTCA 58.555 43.478 2.46 0.00 0.00 3.41
4679 4804 3.812053 GGGATGCATGTGTAATGAGAGTC 59.188 47.826 2.46 0.00 0.00 3.36
4680 4805 3.457380 AGGGATGCATGTGTAATGAGAGT 59.543 43.478 2.46 0.00 0.00 3.24
4681 4806 4.063689 GAGGGATGCATGTGTAATGAGAG 58.936 47.826 2.46 0.00 0.00 3.20
4682 4807 3.181451 GGAGGGATGCATGTGTAATGAGA 60.181 47.826 2.46 0.00 0.00 3.27
4683 4808 3.144506 GGAGGGATGCATGTGTAATGAG 58.855 50.000 2.46 0.00 0.00 2.90
4684 4809 2.779430 AGGAGGGATGCATGTGTAATGA 59.221 45.455 2.46 0.00 0.00 2.57
4685 4810 3.144506 GAGGAGGGATGCATGTGTAATG 58.855 50.000 2.46 0.00 0.00 1.90
4686 4811 3.051581 AGAGGAGGGATGCATGTGTAAT 58.948 45.455 2.46 0.00 0.00 1.89
4687 4812 2.481441 AGAGGAGGGATGCATGTGTAA 58.519 47.619 2.46 0.00 0.00 2.41
4688 4813 2.180946 AGAGGAGGGATGCATGTGTA 57.819 50.000 2.46 0.00 0.00 2.90
4689 4814 1.211457 GAAGAGGAGGGATGCATGTGT 59.789 52.381 2.46 0.00 0.00 3.72
4690 4815 1.809271 CGAAGAGGAGGGATGCATGTG 60.809 57.143 2.46 0.00 0.00 3.21
4691 4816 0.467384 CGAAGAGGAGGGATGCATGT 59.533 55.000 2.46 0.00 0.00 3.21
4692 4817 0.883814 GCGAAGAGGAGGGATGCATG 60.884 60.000 2.46 0.00 0.00 4.06
4693 4818 1.053264 AGCGAAGAGGAGGGATGCAT 61.053 55.000 0.00 0.00 0.00 3.96
4694 4819 1.267574 AAGCGAAGAGGAGGGATGCA 61.268 55.000 0.00 0.00 0.00 3.96
4695 4820 0.531753 GAAGCGAAGAGGAGGGATGC 60.532 60.000 0.00 0.00 0.00 3.91
4696 4821 0.826715 TGAAGCGAAGAGGAGGGATG 59.173 55.000 0.00 0.00 0.00 3.51
4697 4822 1.208293 GTTGAAGCGAAGAGGAGGGAT 59.792 52.381 0.00 0.00 0.00 3.85
4698 4823 0.608640 GTTGAAGCGAAGAGGAGGGA 59.391 55.000 0.00 0.00 0.00 4.20
4699 4824 0.610687 AGTTGAAGCGAAGAGGAGGG 59.389 55.000 0.00 0.00 0.00 4.30
4700 4825 2.464157 AAGTTGAAGCGAAGAGGAGG 57.536 50.000 0.00 0.00 0.00 4.30
4701 4826 4.319839 GGAAAAAGTTGAAGCGAAGAGGAG 60.320 45.833 0.00 0.00 0.00 3.69
4702 4827 3.564225 GGAAAAAGTTGAAGCGAAGAGGA 59.436 43.478 0.00 0.00 0.00 3.71
4703 4828 3.315191 TGGAAAAAGTTGAAGCGAAGAGG 59.685 43.478 0.00 0.00 0.00 3.69
4704 4829 4.552166 TGGAAAAAGTTGAAGCGAAGAG 57.448 40.909 0.00 0.00 0.00 2.85
4705 4830 4.398044 AGTTGGAAAAAGTTGAAGCGAAGA 59.602 37.500 0.00 0.00 0.00 2.87
4706 4831 4.672409 AGTTGGAAAAAGTTGAAGCGAAG 58.328 39.130 0.00 0.00 0.00 3.79
4707 4832 4.712122 AGTTGGAAAAAGTTGAAGCGAA 57.288 36.364 0.00 0.00 0.00 4.70
4708 4833 4.712122 AAGTTGGAAAAAGTTGAAGCGA 57.288 36.364 0.00 0.00 0.00 4.93
4709 4834 6.562086 GCATAAAGTTGGAAAAAGTTGAAGCG 60.562 38.462 0.00 0.00 0.00 4.68
4710 4835 6.257630 TGCATAAAGTTGGAAAAAGTTGAAGC 59.742 34.615 0.00 0.00 0.00 3.86
4711 4836 7.769272 TGCATAAAGTTGGAAAAAGTTGAAG 57.231 32.000 0.00 0.00 0.00 3.02
4712 4837 7.168972 CGATGCATAAAGTTGGAAAAAGTTGAA 59.831 33.333 0.00 0.00 0.00 2.69
4713 4838 6.640499 CGATGCATAAAGTTGGAAAAAGTTGA 59.360 34.615 0.00 0.00 0.00 3.18
4714 4839 6.128849 CCGATGCATAAAGTTGGAAAAAGTTG 60.129 38.462 0.00 0.00 0.00 3.16
4715 4840 5.925969 CCGATGCATAAAGTTGGAAAAAGTT 59.074 36.000 0.00 0.00 0.00 2.66
4716 4841 5.242838 TCCGATGCATAAAGTTGGAAAAAGT 59.757 36.000 0.00 0.00 0.00 2.66
4717 4842 5.572896 GTCCGATGCATAAAGTTGGAAAAAG 59.427 40.000 0.00 0.00 0.00 2.27
4718 4843 5.465935 GTCCGATGCATAAAGTTGGAAAAA 58.534 37.500 0.00 0.00 0.00 1.94
4719 4844 4.082463 GGTCCGATGCATAAAGTTGGAAAA 60.082 41.667 0.00 0.00 0.00 2.29
4720 4845 3.442273 GGTCCGATGCATAAAGTTGGAAA 59.558 43.478 0.00 0.00 0.00 3.13
4721 4846 3.013921 GGTCCGATGCATAAAGTTGGAA 58.986 45.455 0.00 0.00 0.00 3.53
4722 4847 2.026729 TGGTCCGATGCATAAAGTTGGA 60.027 45.455 0.00 0.00 0.00 3.53
4723 4848 2.097466 GTGGTCCGATGCATAAAGTTGG 59.903 50.000 0.00 0.00 0.00 3.77
4724 4849 2.746904 TGTGGTCCGATGCATAAAGTTG 59.253 45.455 0.00 0.00 0.00 3.16
4725 4850 3.066291 TGTGGTCCGATGCATAAAGTT 57.934 42.857 0.00 0.00 0.00 2.66
4726 4851 2.779755 TGTGGTCCGATGCATAAAGT 57.220 45.000 0.00 0.00 0.00 2.66
4727 4852 4.637483 AAATGTGGTCCGATGCATAAAG 57.363 40.909 0.00 0.00 0.00 1.85
4728 4853 5.184864 AGAAAAATGTGGTCCGATGCATAAA 59.815 36.000 0.00 0.00 0.00 1.40
4729 4854 4.704540 AGAAAAATGTGGTCCGATGCATAA 59.295 37.500 0.00 0.00 0.00 1.90
4730 4855 4.269183 AGAAAAATGTGGTCCGATGCATA 58.731 39.130 0.00 0.00 0.00 3.14
4731 4856 3.091545 AGAAAAATGTGGTCCGATGCAT 58.908 40.909 0.00 0.00 0.00 3.96
4732 4857 2.487762 GAGAAAAATGTGGTCCGATGCA 59.512 45.455 0.00 0.00 0.00 3.96
4733 4858 2.749621 AGAGAAAAATGTGGTCCGATGC 59.250 45.455 0.00 0.00 0.00 3.91
4734 4859 4.256920 AGAGAGAAAAATGTGGTCCGATG 58.743 43.478 0.00 0.00 0.00 3.84
4735 4860 4.559862 AGAGAGAAAAATGTGGTCCGAT 57.440 40.909 0.00 0.00 0.00 4.18
4736 4861 5.477607 TTAGAGAGAAAAATGTGGTCCGA 57.522 39.130 0.00 0.00 0.00 4.55
4737 4862 4.093556 GCTTAGAGAGAAAAATGTGGTCCG 59.906 45.833 0.00 0.00 0.00 4.79
4738 4863 5.003804 TGCTTAGAGAGAAAAATGTGGTCC 58.996 41.667 0.00 0.00 0.00 4.46
4739 4864 5.703130 AGTGCTTAGAGAGAAAAATGTGGTC 59.297 40.000 0.00 0.00 0.00 4.02
4740 4865 5.625150 AGTGCTTAGAGAGAAAAATGTGGT 58.375 37.500 0.00 0.00 0.00 4.16
4741 4866 5.163913 CGAGTGCTTAGAGAGAAAAATGTGG 60.164 44.000 0.00 0.00 0.00 4.17
4742 4867 5.406780 ACGAGTGCTTAGAGAGAAAAATGTG 59.593 40.000 0.00 0.00 0.00 3.21
4743 4868 5.542779 ACGAGTGCTTAGAGAGAAAAATGT 58.457 37.500 0.00 0.00 0.00 2.71
4744 4869 5.866633 AGACGAGTGCTTAGAGAGAAAAATG 59.133 40.000 0.00 0.00 0.00 2.32
4745 4870 6.031751 AGACGAGTGCTTAGAGAGAAAAAT 57.968 37.500 0.00 0.00 0.00 1.82
4746 4871 5.455056 AGACGAGTGCTTAGAGAGAAAAA 57.545 39.130 0.00 0.00 0.00 1.94
4747 4872 5.241949 AGAAGACGAGTGCTTAGAGAGAAAA 59.758 40.000 0.00 0.00 0.00 2.29
4748 4873 4.762765 AGAAGACGAGTGCTTAGAGAGAAA 59.237 41.667 0.00 0.00 0.00 2.52
4749 4874 4.155099 CAGAAGACGAGTGCTTAGAGAGAA 59.845 45.833 0.00 0.00 0.00 2.87
4750 4875 3.687212 CAGAAGACGAGTGCTTAGAGAGA 59.313 47.826 0.00 0.00 0.00 3.10
4751 4876 3.181501 CCAGAAGACGAGTGCTTAGAGAG 60.182 52.174 0.00 0.00 0.00 3.20
4752 4877 2.750166 CCAGAAGACGAGTGCTTAGAGA 59.250 50.000 0.00 0.00 0.00 3.10
4753 4878 2.750166 TCCAGAAGACGAGTGCTTAGAG 59.250 50.000 0.00 0.00 0.00 2.43
4754 4879 2.750166 CTCCAGAAGACGAGTGCTTAGA 59.250 50.000 0.00 0.00 0.00 2.10
4755 4880 2.750166 TCTCCAGAAGACGAGTGCTTAG 59.250 50.000 0.00 0.00 0.00 2.18
4756 4881 2.750166 CTCTCCAGAAGACGAGTGCTTA 59.250 50.000 0.00 0.00 0.00 3.09
4757 4882 1.543802 CTCTCCAGAAGACGAGTGCTT 59.456 52.381 0.00 0.00 0.00 3.91
4758 4883 1.173043 CTCTCCAGAAGACGAGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
4759 4884 0.172352 CCTCTCCAGAAGACGAGTGC 59.828 60.000 0.00 0.00 0.00 4.40
4760 4885 1.827681 TCCTCTCCAGAAGACGAGTG 58.172 55.000 0.00 0.00 0.00 3.51
4761 4886 2.650322 GATCCTCTCCAGAAGACGAGT 58.350 52.381 0.00 0.00 0.00 4.18
4762 4887 1.953686 GGATCCTCTCCAGAAGACGAG 59.046 57.143 3.84 0.00 44.26 4.18
4763 4888 2.060050 GGATCCTCTCCAGAAGACGA 57.940 55.000 3.84 0.00 44.26 4.20
4772 4897 1.841103 GGGGAGCAGGATCCTCTCC 60.841 68.421 32.16 32.16 42.38 3.71
4773 4898 1.841103 GGGGGAGCAGGATCCTCTC 60.841 68.421 22.99 22.99 40.03 3.20
4774 4899 1.983035 ATGGGGGAGCAGGATCCTCT 61.983 60.000 12.69 12.27 40.03 3.69
4775 4900 1.463018 ATGGGGGAGCAGGATCCTC 60.463 63.158 12.69 7.20 39.34 3.71
4776 4901 1.463018 GATGGGGGAGCAGGATCCT 60.463 63.158 9.02 9.02 39.50 3.24
4777 4902 2.533463 GGATGGGGGAGCAGGATCC 61.533 68.421 2.48 2.48 38.76 3.36
4778 4903 2.888447 CGGATGGGGGAGCAGGATC 61.888 68.421 0.00 0.00 0.00 3.36
4779 4904 2.851102 CGGATGGGGGAGCAGGAT 60.851 66.667 0.00 0.00 0.00 3.24
4780 4905 3.634157 TTCGGATGGGGGAGCAGGA 62.634 63.158 0.00 0.00 0.00 3.86
4781 4906 3.089874 TTCGGATGGGGGAGCAGG 61.090 66.667 0.00 0.00 0.00 4.85
4782 4907 2.190578 GTTCGGATGGGGGAGCAG 59.809 66.667 0.00 0.00 0.00 4.24
4783 4908 2.539277 TAGGTTCGGATGGGGGAGCA 62.539 60.000 0.00 0.00 0.00 4.26
4784 4909 1.764854 TAGGTTCGGATGGGGGAGC 60.765 63.158 0.00 0.00 0.00 4.70
4785 4910 0.398664 AGTAGGTTCGGATGGGGGAG 60.399 60.000 0.00 0.00 0.00 4.30
4786 4911 0.043637 AAGTAGGTTCGGATGGGGGA 59.956 55.000 0.00 0.00 0.00 4.81
4787 4912 0.916809 AAAGTAGGTTCGGATGGGGG 59.083 55.000 0.00 0.00 0.00 5.40
4788 4913 2.801077 AAAAGTAGGTTCGGATGGGG 57.199 50.000 0.00 0.00 0.00 4.96
4789 4914 3.689649 CAGAAAAAGTAGGTTCGGATGGG 59.310 47.826 0.00 0.00 0.00 4.00
4790 4915 4.324267 ACAGAAAAAGTAGGTTCGGATGG 58.676 43.478 0.00 0.00 0.00 3.51
4791 4916 4.994852 TGACAGAAAAAGTAGGTTCGGATG 59.005 41.667 0.00 0.00 0.00 3.51
4792 4917 5.223449 TGACAGAAAAAGTAGGTTCGGAT 57.777 39.130 0.00 0.00 0.00 4.18
4793 4918 4.675976 TGACAGAAAAAGTAGGTTCGGA 57.324 40.909 0.00 0.00 0.00 4.55
4794 4919 4.392138 GGATGACAGAAAAAGTAGGTTCGG 59.608 45.833 0.00 0.00 0.00 4.30
4795 4920 4.091509 CGGATGACAGAAAAAGTAGGTTCG 59.908 45.833 0.00 0.00 0.00 3.95
4796 4921 5.235516 TCGGATGACAGAAAAAGTAGGTTC 58.764 41.667 0.00 0.00 0.00 3.62
4797 4922 5.223449 TCGGATGACAGAAAAAGTAGGTT 57.777 39.130 0.00 0.00 0.00 3.50
4798 4923 4.884668 TCGGATGACAGAAAAAGTAGGT 57.115 40.909 0.00 0.00 0.00 3.08
4799 4924 4.811557 GGATCGGATGACAGAAAAAGTAGG 59.188 45.833 0.00 0.00 0.00 3.18
4800 4925 5.665459 AGGATCGGATGACAGAAAAAGTAG 58.335 41.667 0.00 0.00 0.00 2.57
4801 4926 5.677319 AGGATCGGATGACAGAAAAAGTA 57.323 39.130 0.00 0.00 0.00 2.24
4802 4927 4.559862 AGGATCGGATGACAGAAAAAGT 57.440 40.909 0.00 0.00 0.00 2.66
4803 4928 7.332926 CCATATAGGATCGGATGACAGAAAAAG 59.667 40.741 0.00 0.00 41.22 2.27
4804 4929 7.161404 CCATATAGGATCGGATGACAGAAAAA 58.839 38.462 0.00 0.00 41.22 1.94
4805 4930 6.701340 CCATATAGGATCGGATGACAGAAAA 58.299 40.000 0.00 0.00 41.22 2.29
4806 4931 5.337571 GCCATATAGGATCGGATGACAGAAA 60.338 44.000 0.00 0.00 41.22 2.52
4807 4932 4.160439 GCCATATAGGATCGGATGACAGAA 59.840 45.833 0.00 0.00 41.22 3.02
4808 4933 3.701542 GCCATATAGGATCGGATGACAGA 59.298 47.826 0.00 0.00 41.22 3.41
4809 4934 3.448660 TGCCATATAGGATCGGATGACAG 59.551 47.826 0.00 0.00 41.22 3.51
4810 4935 3.440127 TGCCATATAGGATCGGATGACA 58.560 45.455 0.00 0.00 41.22 3.58
4811 4936 4.141846 ACATGCCATATAGGATCGGATGAC 60.142 45.833 0.00 0.00 41.22 3.06
4812 4937 4.033009 ACATGCCATATAGGATCGGATGA 58.967 43.478 0.00 0.00 41.22 2.92
4813 4938 4.124970 CACATGCCATATAGGATCGGATG 58.875 47.826 0.00 0.00 41.22 3.51
4814 4939 3.135348 CCACATGCCATATAGGATCGGAT 59.865 47.826 0.00 0.00 41.22 4.18
4815 4940 2.501316 CCACATGCCATATAGGATCGGA 59.499 50.000 0.00 0.00 41.22 4.55
4816 4941 2.420547 CCCACATGCCATATAGGATCGG 60.421 54.545 0.00 0.00 41.22 4.18
4817 4942 2.420547 CCCCACATGCCATATAGGATCG 60.421 54.545 0.00 0.00 41.22 3.69
4818 4943 2.684927 GCCCCACATGCCATATAGGATC 60.685 54.545 0.00 0.00 41.22 3.36
4819 4944 1.285962 GCCCCACATGCCATATAGGAT 59.714 52.381 0.00 0.00 41.22 3.24
4820 4945 0.698238 GCCCCACATGCCATATAGGA 59.302 55.000 0.00 0.00 41.22 2.94
4821 4946 0.405198 TGCCCCACATGCCATATAGG 59.595 55.000 0.00 0.00 41.84 2.57
4822 4947 2.291089 TGATGCCCCACATGCCATATAG 60.291 50.000 0.00 0.00 39.84 1.31
4823 4948 1.709679 TGATGCCCCACATGCCATATA 59.290 47.619 0.00 0.00 39.84 0.86
4824 4949 0.483770 TGATGCCCCACATGCCATAT 59.516 50.000 0.00 0.00 39.84 1.78
4825 4950 0.467844 GTGATGCCCCACATGCCATA 60.468 55.000 0.00 0.00 39.84 2.74
4826 4951 1.759299 GTGATGCCCCACATGCCAT 60.759 57.895 0.00 0.00 39.84 4.40
4827 4952 2.362760 GTGATGCCCCACATGCCA 60.363 61.111 0.00 0.00 39.84 4.92
4828 4953 3.149648 GGTGATGCCCCACATGCC 61.150 66.667 7.69 0.00 39.84 4.40
4837 4962 2.464403 ATAGCCCCAGGGTGATGCC 61.464 63.158 4.22 0.00 37.65 4.40
4838 4963 1.228367 CATAGCCCCAGGGTGATGC 60.228 63.158 4.22 0.00 37.65 3.91
4839 4964 1.228367 GCATAGCCCCAGGGTGATG 60.228 63.158 4.22 9.26 37.65 3.07
4840 4965 1.070127 ATGCATAGCCCCAGGGTGAT 61.070 55.000 4.22 0.00 37.65 3.06
4841 4966 1.288508 AATGCATAGCCCCAGGGTGA 61.289 55.000 4.22 0.00 37.65 4.02
4842 4967 1.111116 CAATGCATAGCCCCAGGGTG 61.111 60.000 4.22 0.00 37.65 4.61
4843 4968 1.231068 CAATGCATAGCCCCAGGGT 59.769 57.895 4.22 0.00 37.65 4.34
4844 4969 1.532316 CCAATGCATAGCCCCAGGG 60.532 63.158 0.00 0.00 38.57 4.45
4845 4970 2.205152 GCCAATGCATAGCCCCAGG 61.205 63.158 0.00 0.00 37.47 4.45
4846 4971 2.205152 GGCCAATGCATAGCCCCAG 61.205 63.158 23.94 0.85 41.00 4.45
4847 4972 2.123338 GGCCAATGCATAGCCCCA 60.123 61.111 23.94 0.00 41.00 4.96
4848 4973 1.534717 ATGGCCAATGCATAGCCCC 60.535 57.895 28.68 15.48 46.55 5.80
4849 4974 1.669440 CATGGCCAATGCATAGCCC 59.331 57.895 28.68 16.97 46.55 5.19
4862 4987 1.444895 CACGCTTTGAAGGCATGGC 60.445 57.895 12.14 12.14 0.00 4.40
4863 4988 1.213537 CCACGCTTTGAAGGCATGG 59.786 57.895 0.00 0.00 36.72 3.66
4864 4989 1.213537 CCCACGCTTTGAAGGCATG 59.786 57.895 0.00 0.00 0.00 4.06
4865 4990 1.228552 ACCCACGCTTTGAAGGCAT 60.229 52.632 0.00 0.00 0.00 4.40
4866 4991 2.192861 CACCCACGCTTTGAAGGCA 61.193 57.895 0.00 0.00 0.00 4.75
4867 4992 2.644992 CACCCACGCTTTGAAGGC 59.355 61.111 0.00 0.00 0.00 4.35
4868 4993 2.644992 GCACCCACGCTTTGAAGG 59.355 61.111 0.00 0.00 0.00 3.46
4869 4994 2.252260 CGCACCCACGCTTTGAAG 59.748 61.111 0.00 0.00 0.00 3.02
4870 4995 2.515057 ACGCACCCACGCTTTGAA 60.515 55.556 0.00 0.00 36.19 2.69
4871 4996 2.970324 GACGCACCCACGCTTTGA 60.970 61.111 0.00 0.00 36.19 2.69
4872 4997 4.368808 CGACGCACCCACGCTTTG 62.369 66.667 0.00 0.00 36.19 2.77
4880 5005 1.963464 TTATCCTTCCCGACGCACCC 61.963 60.000 0.00 0.00 0.00 4.61
4881 5006 0.106149 ATTATCCTTCCCGACGCACC 59.894 55.000 0.00 0.00 0.00 5.01
4882 5007 1.865340 GAATTATCCTTCCCGACGCAC 59.135 52.381 0.00 0.00 0.00 5.34
4883 5008 1.760613 AGAATTATCCTTCCCGACGCA 59.239 47.619 0.00 0.00 0.00 5.24
4884 5009 2.528041 AGAATTATCCTTCCCGACGC 57.472 50.000 0.00 0.00 0.00 5.19
4885 5010 4.873827 TCAAAAGAATTATCCTTCCCGACG 59.126 41.667 0.00 0.00 0.00 5.12
4886 5011 6.374613 ACTTCAAAAGAATTATCCTTCCCGAC 59.625 38.462 0.00 0.00 0.00 4.79
4887 5012 6.481643 ACTTCAAAAGAATTATCCTTCCCGA 58.518 36.000 0.00 0.00 0.00 5.14
4888 5013 6.759497 ACTTCAAAAGAATTATCCTTCCCG 57.241 37.500 0.00 0.00 0.00 5.14
4889 5014 7.896811 ACAACTTCAAAAGAATTATCCTTCCC 58.103 34.615 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.