Multiple sequence alignment - TraesCS6A01G276300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G276300 chr6A 100.000 4887 0 0 1 4887 503424200 503429086 0.000000e+00 9025.0
1 TraesCS6A01G276300 chr6D 89.260 3324 184 82 538 3725 362986442 362989728 0.000000e+00 4000.0
2 TraesCS6A01G276300 chr6D 91.240 605 33 12 3730 4317 362989763 362990364 0.000000e+00 806.0
3 TraesCS6A01G276300 chr6D 87.952 581 35 11 1 551 362985847 362986422 0.000000e+00 652.0
4 TraesCS6A01G276300 chr6D 93.033 244 11 3 4304 4547 362990387 362990624 7.780000e-93 351.0
5 TraesCS6A01G276300 chr6B 92.793 1457 67 19 2290 3727 544404220 544405657 0.000000e+00 2074.0
6 TraesCS6A01G276300 chr6B 91.160 1448 71 26 814 2235 544402405 544403821 0.000000e+00 1912.0
7 TraesCS6A01G276300 chr6B 87.414 1017 59 28 3730 4696 544405689 544406686 0.000000e+00 1105.0
8 TraesCS6A01G276300 chr6B 85.428 549 43 15 1 523 544394934 544395471 2.000000e-148 536.0
9 TraesCS6A01G276300 chr6B 88.660 194 15 2 4689 4882 544408988 544409174 3.800000e-56 230.0
10 TraesCS6A01G276300 chr7D 78.304 802 130 33 2645 3425 191492654 191491876 1.230000e-130 477.0
11 TraesCS6A01G276300 chr7D 90.830 229 19 2 2002 2229 191493347 191493120 6.150000e-79 305.0
12 TraesCS6A01G276300 chr7D 88.940 217 20 4 2002 2216 191557849 191557635 1.040000e-66 265.0
13 TraesCS6A01G276300 chr7D 79.464 224 39 7 2660 2881 191555908 191555690 8.470000e-33 152.0
14 TraesCS6A01G276300 chr7A 78.218 808 126 40 2645 3425 200032008 200031224 5.730000e-129 472.0
15 TraesCS6A01G276300 chr7A 91.304 230 17 3 2002 2229 200032714 200032486 1.320000e-80 311.0
16 TraesCS6A01G276300 chr7A 89.815 216 20 2 2002 2216 200064996 200064782 4.820000e-70 276.0
17 TraesCS6A01G276300 chr7A 78.571 224 41 7 2660 2881 200061783 200061565 1.830000e-29 141.0
18 TraesCS6A01G276300 chr7B 91.163 215 19 0 2002 2216 336647530 336647316 4.780000e-75 292.0
19 TraesCS6A01G276300 chr7B 87.552 241 25 4 2645 2884 336646837 336646601 1.730000e-69 274.0
20 TraesCS6A01G276300 chr7B 88.426 216 23 2 2002 2216 336718601 336718387 4.850000e-65 259.0
21 TraesCS6A01G276300 chr7B 78.125 224 42 7 2660 2881 336703415 336703197 8.530000e-28 135.0
22 TraesCS6A01G276300 chr5B 80.892 157 30 0 2060 2216 532933233 532933077 1.850000e-24 124.0
23 TraesCS6A01G276300 chr2A 77.193 171 39 0 2658 2828 203904286 203904116 3.110000e-17 100.0
24 TraesCS6A01G276300 chr4A 81.818 99 14 4 2969 3065 460239338 460239242 4.050000e-11 80.5
25 TraesCS6A01G276300 chr4D 80.808 99 15 4 2969 3065 116271046 116271142 1.890000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G276300 chr6A 503424200 503429086 4886 False 9025.00 9025 100.00000 1 4887 1 chr6A.!!$F1 4886
1 TraesCS6A01G276300 chr6D 362985847 362990624 4777 False 1452.25 4000 90.37125 1 4547 4 chr6D.!!$F1 4546
2 TraesCS6A01G276300 chr6B 544402405 544409174 6769 False 1330.25 2074 90.00675 814 4882 4 chr6B.!!$F2 4068
3 TraesCS6A01G276300 chr6B 544394934 544395471 537 False 536.00 536 85.42800 1 523 1 chr6B.!!$F1 522
4 TraesCS6A01G276300 chr7D 191491876 191493347 1471 True 391.00 477 84.56700 2002 3425 2 chr7D.!!$R1 1423
5 TraesCS6A01G276300 chr7D 191555690 191557849 2159 True 208.50 265 84.20200 2002 2881 2 chr7D.!!$R2 879
6 TraesCS6A01G276300 chr7A 200031224 200032714 1490 True 391.50 472 84.76100 2002 3425 2 chr7A.!!$R1 1423
7 TraesCS6A01G276300 chr7A 200061565 200064996 3431 True 208.50 276 84.19300 2002 2881 2 chr7A.!!$R2 879
8 TraesCS6A01G276300 chr7B 336646601 336647530 929 True 283.00 292 89.35750 2002 2884 2 chr7B.!!$R3 882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 568 0.170561 CAATGGACAAGAGCAGCAGC 59.829 55.0 0.0 0.00 42.56 5.25 F
1207 1299 0.037605 ACCAGTAGTAGCACCAACGC 60.038 55.0 0.0 0.00 0.00 4.84 F
1616 1739 0.037232 GCACCCTCTTCTACTGCGTT 60.037 55.0 0.0 0.00 0.00 4.84 F
1909 2040 0.179145 CCGTCTACAGGGTACAAGCG 60.179 60.0 0.0 0.00 0.00 4.68 F
1983 2119 0.455815 GATTAAACCAGCTTGGCCGG 59.544 55.0 0.0 0.00 42.67 6.13 F
2892 6214 0.583438 CATAGTAAGCGCGCAATGCT 59.417 50.0 35.1 29.18 46.68 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1445 0.110486 GGCGATTCCACCATGGGTAT 59.890 55.000 18.09 3.22 38.32 2.73 R
2216 2360 0.391793 GGAGGAAAGGGAAGCGACTG 60.392 60.000 0.00 0.00 0.00 3.51 R
2900 6222 0.670546 ACACGGCCTGAAGAACATCG 60.671 55.000 0.00 0.00 0.00 3.84 R
2901 6223 0.798776 CACACGGCCTGAAGAACATC 59.201 55.000 0.00 0.00 0.00 3.06 R
3243 6604 1.080093 GACGCGTCCATGAACTCCA 60.080 57.895 28.61 0.00 0.00 3.86 R
4632 8101 0.179070 GCCTTCCTCCAATCCTCGTC 60.179 60.000 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 94 3.200593 GCTCAGCGCCACCATCAG 61.201 66.667 2.29 0.00 0.00 2.90
91 95 2.267006 CTCAGCGCCACCATCAGT 59.733 61.111 2.29 0.00 0.00 3.41
94 98 3.321648 AGCGCCACCATCAGTCCA 61.322 61.111 2.29 0.00 0.00 4.02
95 99 2.124570 GCGCCACCATCAGTCCAT 60.125 61.111 0.00 0.00 0.00 3.41
105 117 1.267574 ATCAGTCCATCACCCTGCGT 61.268 55.000 0.00 0.00 0.00 5.24
204 236 2.022129 GGCGTCCTCTGTTCACACG 61.022 63.158 0.00 0.00 0.00 4.49
226 258 1.743772 GCACGTCCTAAGCATGGTCAT 60.744 52.381 0.00 0.00 0.00 3.06
241 273 5.620205 GCATGGTCATAGGAGATACGTACTG 60.620 48.000 0.00 0.00 0.00 2.74
283 315 5.011533 AGGAGCTGAGATAAGATAATGCGTT 59.988 40.000 0.00 0.00 0.00 4.84
298 332 1.303236 CGTTGGGTGCCCTGATTGA 60.303 57.895 8.91 0.00 36.94 2.57
350 384 0.315869 GTGTGCCGACGTGTGAAAAG 60.316 55.000 0.00 0.00 0.00 2.27
376 412 2.637025 CGCGTGGTTTCAAGTGGG 59.363 61.111 0.00 0.00 31.01 4.61
383 419 0.605589 GGTTTCAAGTGGGAGGGACG 60.606 60.000 0.00 0.00 0.00 4.79
499 539 7.084486 GTGTAAAAACAATCTGTTGGAGATCC 58.916 38.462 0.00 0.00 40.14 3.36
515 556 0.853530 ATCCTTAGGGGGCAATGGAC 59.146 55.000 0.00 0.00 35.33 4.02
523 564 1.318158 GGGGCAATGGACAAGAGCAG 61.318 60.000 0.00 0.00 0.00 4.24
524 565 1.509923 GGCAATGGACAAGAGCAGC 59.490 57.895 0.00 0.00 0.00 5.25
527 568 0.170561 CAATGGACAAGAGCAGCAGC 59.829 55.000 0.00 0.00 42.56 5.25
532 573 0.321475 GACAAGAGCAGCAGCCTCTT 60.321 55.000 7.84 7.84 43.56 2.85
564 643 9.096160 TGGCGATAGAACGTTTTGTTATTTATA 57.904 29.630 0.46 0.00 42.09 0.98
599 678 8.732413 TGTAAGTAGTCAACACGTTGTATAAG 57.268 34.615 9.60 0.00 41.16 1.73
601 680 4.855388 AGTAGTCAACACGTTGTATAAGCG 59.145 41.667 9.60 0.00 41.16 4.68
603 682 1.727880 TCAACACGTTGTATAAGCGGC 59.272 47.619 9.60 0.00 41.16 6.53
609 688 3.002246 CACGTTGTATAAGCGGCAATGAT 59.998 43.478 1.45 0.00 34.36 2.45
622 702 3.015327 GGCAATGATCAAACAGAGCTCT 58.985 45.455 11.45 11.45 32.67 4.09
626 706 1.285578 GATCAAACAGAGCTCTCGCC 58.714 55.000 14.96 0.00 36.60 5.54
634 714 4.775977 AGCTCTCGCCAGCCTCCT 62.776 66.667 2.11 0.00 40.65 3.69
661 741 7.903995 AAAAATGAGCAAAAAGTGTGAAGAA 57.096 28.000 0.00 0.00 0.00 2.52
664 744 5.384063 TGAGCAAAAAGTGTGAAGAACAA 57.616 34.783 0.00 0.00 41.57 2.83
667 747 6.531240 TGAGCAAAAAGTGTGAAGAACAATTC 59.469 34.615 0.00 0.00 45.91 2.17
683 763 8.095937 AGAACAATTCTTTTTAACCGGTCTAG 57.904 34.615 8.04 1.01 36.36 2.43
698 780 4.403585 GGTCTAGACCCCTTTCATGTAC 57.596 50.000 28.87 1.06 45.68 2.90
704 786 5.456921 AGACCCCTTTCATGTACATTCAT 57.543 39.130 5.37 0.00 0.00 2.57
764 847 3.002042 CGACATCATCAGCATCAGAAACC 59.998 47.826 0.00 0.00 0.00 3.27
771 854 2.821378 TCAGCATCAGAAACCCAATGTG 59.179 45.455 0.00 0.00 0.00 3.21
792 875 1.431488 GCATCCGCAATCGAAGAGCA 61.431 55.000 7.67 0.00 38.01 4.26
795 878 2.705826 CGCAATCGAAGAGCAGGC 59.294 61.111 7.67 0.00 43.63 4.85
798 881 1.760268 GCAATCGAAGAGCAGGCTCG 61.760 60.000 15.02 5.44 46.90 5.03
800 883 0.532573 AATCGAAGAGCAGGCTCGAA 59.467 50.000 15.02 3.51 46.90 3.71
808 894 2.104451 AGAGCAGGCTCGAAATCATCAT 59.896 45.455 15.02 0.00 46.90 2.45
820 906 7.482654 TCGAAATCATCATCATCAGTAAACC 57.517 36.000 0.00 0.00 0.00 3.27
858 944 0.758123 TCGGATCACATAGCATGGCA 59.242 50.000 0.00 0.00 33.60 4.92
863 949 2.609427 TCACATAGCATGGCACTCTC 57.391 50.000 0.00 0.00 33.60 3.20
912 1000 2.765699 AGTAAATCATTTGCCGCCCAAT 59.234 40.909 0.00 0.00 32.49 3.16
924 1012 2.855370 GCCGCCCAATGTTAAAATAACG 59.145 45.455 0.00 0.00 0.00 3.18
955 1044 4.156739 CACTGAGCAATAGAAAAGGGGTTC 59.843 45.833 0.00 0.00 0.00 3.62
994 1084 2.224992 TGCAGGGCCAAGTTCAAGATTA 60.225 45.455 6.18 0.00 0.00 1.75
998 1088 2.621668 GGGCCAAGTTCAAGATTAGGCT 60.622 50.000 4.39 0.00 40.40 4.58
1002 1092 4.326826 CCAAGTTCAAGATTAGGCTGTCA 58.673 43.478 0.00 0.00 0.00 3.58
1018 1108 4.947388 GGCTGTCATAAAAGGACCAACATA 59.053 41.667 0.00 0.00 34.36 2.29
1083 1173 3.036959 TCCCCTCCCTCTCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
1135 1225 1.607225 TGAGTGATGGCCCCCTATTT 58.393 50.000 0.00 0.00 0.00 1.40
1192 1282 4.712425 GCGCCAGCAGCAAACCAG 62.712 66.667 0.00 0.00 44.04 4.00
1193 1283 3.289834 CGCCAGCAGCAAACCAGT 61.290 61.111 0.00 0.00 44.04 4.00
1207 1299 0.037605 ACCAGTAGTAGCACCAACGC 60.038 55.000 0.00 0.00 0.00 4.84
1222 1314 3.869272 CGCATCTCGCAAGCCACC 61.869 66.667 0.00 0.00 42.60 4.61
1226 1318 3.958147 ATCTCGCAAGCCACCGGTG 62.958 63.158 28.26 28.26 37.18 4.94
1227 1319 4.988598 CTCGCAAGCCACCGGTGT 62.989 66.667 31.80 13.15 37.18 4.16
1228 1320 4.980805 TCGCAAGCCACCGGTGTC 62.981 66.667 31.80 21.62 37.18 3.67
1310 1402 0.466739 AACAAGGAACGAACACCCCC 60.467 55.000 0.00 0.00 0.00 5.40
1352 1444 0.820871 CAGAGGAAGACCGGGAAGAG 59.179 60.000 6.32 0.00 41.83 2.85
1353 1445 0.705253 AGAGGAAGACCGGGAAGAGA 59.295 55.000 6.32 0.00 41.83 3.10
1354 1446 1.289530 AGAGGAAGACCGGGAAGAGAT 59.710 52.381 6.32 0.00 41.83 2.75
1408 1518 4.082523 CCGGCTGATGGACACCGT 62.083 66.667 0.00 0.00 39.58 4.83
1412 1522 2.665000 CTGATGGACACCGTGCCT 59.335 61.111 11.65 0.79 0.00 4.75
1438 1548 2.041976 CGAGCGGTGATCCAGGTAT 58.958 57.895 0.00 0.00 0.00 2.73
1487 1607 6.535150 ACATGTAGTATGTGAATGGTTCTTCG 59.465 38.462 0.00 0.00 0.00 3.79
1490 1610 4.906618 AGTATGTGAATGGTTCTTCGGTT 58.093 39.130 0.00 0.00 0.00 4.44
1513 1633 4.137543 GAGGAAGGTGATTGAGTTGTTGT 58.862 43.478 0.00 0.00 0.00 3.32
1514 1634 4.536765 AGGAAGGTGATTGAGTTGTTGTT 58.463 39.130 0.00 0.00 0.00 2.83
1515 1635 4.339247 AGGAAGGTGATTGAGTTGTTGTTG 59.661 41.667 0.00 0.00 0.00 3.33
1616 1739 0.037232 GCACCCTCTTCTACTGCGTT 60.037 55.000 0.00 0.00 0.00 4.84
1668 1799 1.732917 CCCTCTCTCTAGCTGTGCG 59.267 63.158 0.00 0.00 0.00 5.34
1673 1804 2.357323 CTCTCTCTAGCTGTGCGATTGA 59.643 50.000 0.00 0.00 0.00 2.57
1674 1805 2.357323 TCTCTCTAGCTGTGCGATTGAG 59.643 50.000 0.00 0.00 0.00 3.02
1680 1811 0.926846 GCTGTGCGATTGAGCTAGTC 59.073 55.000 0.00 0.00 38.13 2.59
1698 1829 1.813753 CGGGCGTGATGTTGGTAGG 60.814 63.158 0.00 0.00 0.00 3.18
1699 1830 1.600107 GGGCGTGATGTTGGTAGGA 59.400 57.895 0.00 0.00 0.00 2.94
1700 1831 0.462047 GGGCGTGATGTTGGTAGGAG 60.462 60.000 0.00 0.00 0.00 3.69
1721 1852 2.119801 ACTAGCACTGGAATTGGCTG 57.880 50.000 0.00 0.00 37.17 4.85
1750 1881 4.027945 GCGAACTTTTTGGTTCTTCGTTTC 60.028 41.667 0.00 0.00 42.20 2.78
1822 1953 2.187946 CTGCCGGTGATGGACCTC 59.812 66.667 1.90 0.00 43.55 3.85
1909 2040 0.179145 CCGTCTACAGGGTACAAGCG 60.179 60.000 0.00 0.00 0.00 4.68
1926 2057 1.293498 CGCCGCCATATCCTAGCTT 59.707 57.895 0.00 0.00 0.00 3.74
1942 2078 2.555199 AGCTTTGAGATGATACGTGCC 58.445 47.619 0.00 0.00 0.00 5.01
1983 2119 0.455815 GATTAAACCAGCTTGGCCGG 59.544 55.000 0.00 0.00 42.67 6.13
2216 2360 1.153804 GACGCCTTCCTCTTCGGTC 60.154 63.158 0.00 0.00 0.00 4.79
2217 2361 1.874345 GACGCCTTCCTCTTCGGTCA 61.874 60.000 0.00 0.00 0.00 4.02
2236 2554 1.078356 GTCGCTTCCCTTTCCTCCC 60.078 63.158 0.00 0.00 0.00 4.30
2237 2555 2.272471 CGCTTCCCTTTCCTCCCC 59.728 66.667 0.00 0.00 0.00 4.81
2238 2556 2.602676 CGCTTCCCTTTCCTCCCCA 61.603 63.158 0.00 0.00 0.00 4.96
2283 3193 1.880186 GTGTAACACGCCAATGGGG 59.120 57.895 15.21 15.21 41.67 4.96
2317 4197 2.683362 GGAGGTTGATTGGGTTCGATTC 59.317 50.000 0.00 0.00 0.00 2.52
2354 5091 4.214758 GCATAGCATATGCACATGACTGAA 59.785 41.667 31.09 8.73 44.00 3.02
2363 5100 3.384146 TGCACATGACTGAACCAAATTGT 59.616 39.130 0.00 0.00 0.00 2.71
2372 5109 4.278419 ACTGAACCAAATTGTTACAGCTCC 59.722 41.667 9.23 0.00 31.94 4.70
2378 5115 3.525800 AATTGTTACAGCTCCTGGGTT 57.474 42.857 0.00 0.00 35.51 4.11
2498 5456 2.408835 CATGGGAATTCGTGCGGC 59.591 61.111 0.00 0.00 0.00 6.53
2500 5458 3.969250 ATGGGAATTCGTGCGGCGT 62.969 57.895 9.37 0.00 42.13 5.68
2591 5850 5.968387 ATGAACTCCGCTAAAAGTTATCG 57.032 39.130 0.00 0.00 35.90 2.92
2888 6210 1.003851 GGAACATAGTAAGCGCGCAA 58.996 50.000 35.10 18.72 0.00 4.85
2892 6214 0.583438 CATAGTAAGCGCGCAATGCT 59.417 50.000 35.10 29.18 46.68 3.79
2893 6215 1.792367 CATAGTAAGCGCGCAATGCTA 59.208 47.619 35.10 30.25 43.14 3.49
2894 6216 1.487482 TAGTAAGCGCGCAATGCTAG 58.513 50.000 35.10 0.00 43.14 3.42
2896 6218 0.650512 GTAAGCGCGCAATGCTAGAA 59.349 50.000 35.10 1.99 43.14 2.10
2899 6221 1.297158 GCGCGCAATGCTAGAACAG 60.297 57.895 29.10 0.00 43.27 3.16
2954 6288 1.673665 GGTGCTGACCTGAAGCTGG 60.674 63.158 0.00 0.00 41.42 4.85
3157 6501 1.328680 CTCCATGAAAATCGCTCACGG 59.671 52.381 0.00 0.00 40.63 4.94
3178 6523 4.614535 CGGAATGCAAGTTTTCTCCTTCTG 60.615 45.833 0.00 0.00 0.00 3.02
3243 6604 4.070552 GAGCGAGGACAAGGCGGT 62.071 66.667 0.00 0.00 38.56 5.68
3289 6650 1.588082 GTCGTACGCCAAGGAGGAA 59.412 57.895 11.24 0.00 41.22 3.36
3631 6997 2.908688 TGTCCATACACGATGATGGG 57.091 50.000 12.20 0.00 42.56 4.00
3678 7044 0.803380 TGACAGCATGAGCATCGTCG 60.803 55.000 0.00 0.00 45.49 5.12
3725 7091 1.402325 CCCGGCGAGGTTGAATTTTTC 60.402 52.381 9.30 0.00 38.74 2.29
3727 7093 2.414161 CCGGCGAGGTTGAATTTTTCTC 60.414 50.000 9.30 0.00 34.51 2.87
3728 7094 2.225491 CGGCGAGGTTGAATTTTTCTCA 59.775 45.455 0.00 0.00 0.00 3.27
3749 7145 8.547481 TCTCACCCTGTAAATATCTCATTACA 57.453 34.615 0.00 0.00 39.12 2.41
3764 7160 5.079689 TCATTACAGTTTCGGTAGCATCA 57.920 39.130 0.00 0.00 0.00 3.07
3801 7197 4.999950 TGCACAGAAAAAGCAAAGGAAAAA 59.000 33.333 0.00 0.00 34.97 1.94
3805 7201 7.404203 CACAGAAAAAGCAAAGGAAAAATGAG 58.596 34.615 0.00 0.00 0.00 2.90
3814 7210 8.181904 AGCAAAGGAAAAATGAGAAGATAACA 57.818 30.769 0.00 0.00 0.00 2.41
3820 7216 7.031975 GGAAAAATGAGAAGATAACAGGCTTG 58.968 38.462 0.00 0.00 0.00 4.01
3849 7245 2.438385 ATTTTCGCGCACCGTGACAC 62.438 55.000 8.75 0.00 45.96 3.67
3878 7276 1.536766 TGGAGATGCTTTGAACTTGCG 59.463 47.619 0.00 0.00 0.00 4.85
3882 7280 1.916000 GATGCTTTGAACTTGCGATGC 59.084 47.619 0.00 0.00 0.00 3.91
3895 7293 3.781079 TGCGATGCCAAAATTAAGGAG 57.219 42.857 0.48 0.00 0.00 3.69
3924 7322 4.000325 CCACCGTGATGTTGTGAAGATAA 59.000 43.478 0.00 0.00 31.66 1.75
4111 7510 0.321387 CCCATCATCATCAGAGGCCG 60.321 60.000 0.00 0.00 0.00 6.13
4126 7525 2.291190 GAGGCCGCTAGACTTGTAGTAG 59.709 54.545 0.00 0.00 0.00 2.57
4368 7837 4.436998 GACCCCAGTCGTGAGCGG 62.437 72.222 0.00 0.00 38.89 5.52
4441 7910 2.539274 GCTGATGATGAGAAGCTTCGAC 59.461 50.000 20.43 17.90 32.82 4.20
4445 7914 1.751351 TGATGAGAAGCTTCGACCGAT 59.249 47.619 20.43 9.20 0.00 4.18
4446 7915 2.223595 TGATGAGAAGCTTCGACCGATC 60.224 50.000 20.43 16.63 0.00 3.69
4468 7937 4.712425 CGCTTGGCCTGTTGCTGC 62.712 66.667 3.32 0.00 40.92 5.25
4505 7974 0.686789 TGCCATGGACTCCCGATATG 59.313 55.000 18.40 0.00 34.29 1.78
4515 7984 0.952280 TCCCGATATGTCTCTGCGAC 59.048 55.000 0.00 0.00 43.14 5.19
4551 8020 1.375396 CTCCGGAAATGACACCGCA 60.375 57.895 5.23 0.00 46.59 5.69
4578 8047 9.553064 CCTTCTTCTCTGTATATTAACAGCATT 57.447 33.333 1.33 0.00 45.34 3.56
4581 8050 9.755804 TCTTCTCTGTATATTAACAGCATTCTG 57.244 33.333 1.33 0.00 45.34 3.02
4582 8051 9.755804 CTTCTCTGTATATTAACAGCATTCTGA 57.244 33.333 0.00 0.00 45.34 3.27
4584 8053 9.702494 TCTCTGTATATTAACAGCATTCTGATG 57.298 33.333 0.00 0.00 45.34 3.07
4613 8082 3.084039 TCCAGGACTTGCATCACATTTC 58.916 45.455 0.00 0.00 0.00 2.17
4614 8083 2.165030 CCAGGACTTGCATCACATTTCC 59.835 50.000 0.00 0.00 32.09 3.13
4617 8086 3.896888 AGGACTTGCATCACATTTCCAAA 59.103 39.130 0.00 0.00 33.67 3.28
4627 8096 3.443329 TCACATTTCCAAACCGATCATGG 59.557 43.478 0.00 0.00 35.49 3.66
4632 8101 1.439353 CCAAACCGATCATGGAGCCG 61.439 60.000 0.00 0.00 36.27 5.52
4639 8108 1.455773 ATCATGGAGCCGACGAGGA 60.456 57.895 0.00 0.00 45.00 3.71
4641 8110 1.043116 TCATGGAGCCGACGAGGATT 61.043 55.000 0.00 0.00 39.82 3.01
4648 8117 1.956629 GCCGACGAGGATTGGAGGAA 61.957 60.000 0.00 0.00 45.00 3.36
4649 8118 0.103208 CCGACGAGGATTGGAGGAAG 59.897 60.000 0.00 0.00 45.00 3.46
4651 8120 0.179070 GACGAGGATTGGAGGAAGGC 60.179 60.000 0.00 0.00 0.00 4.35
4652 8121 1.227380 CGAGGATTGGAGGAAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
4672 8154 0.667792 GCGCGAGAACTGAGAAGGTT 60.668 55.000 12.10 0.00 0.00 3.50
4681 8163 5.301555 AGAACTGAGAAGGTTAAGAACAGC 58.698 41.667 0.00 0.00 0.00 4.40
4726 10516 2.510691 CCACCGTACCATGCGTCC 60.511 66.667 0.00 0.00 0.00 4.79
4727 10517 2.577059 CACCGTACCATGCGTCCT 59.423 61.111 0.00 0.00 0.00 3.85
4737 10527 5.062183 CGTACCATGCGTCCTGATAATTATG 59.938 44.000 1.78 0.00 0.00 1.90
4753 10543 0.539518 TATGCGTGGCCTAGCTTGAA 59.460 50.000 20.50 4.33 0.00 2.69
4772 10562 2.895372 CCTATCGGGTTGCGTGGC 60.895 66.667 0.00 0.00 0.00 5.01
4773 10563 2.895372 CTATCGGGTTGCGTGGCC 60.895 66.667 0.00 0.00 0.00 5.36
4774 10564 3.385749 CTATCGGGTTGCGTGGCCT 62.386 63.158 3.32 0.00 0.00 5.19
4847 10637 1.150081 GGGTAGGCTGCATGCTCAT 59.850 57.895 20.33 10.85 42.39 2.90
4882 10672 2.158959 CACGTGGCTCCGACGATTC 61.159 63.158 7.95 0.00 39.21 2.52
4883 10673 2.582498 CGTGGCTCCGACGATTCC 60.582 66.667 0.00 0.00 39.21 3.01
4884 10674 2.202892 GTGGCTCCGACGATTCCC 60.203 66.667 0.00 0.00 0.00 3.97
4885 10675 2.363795 TGGCTCCGACGATTCCCT 60.364 61.111 0.00 0.00 0.00 4.20
4886 10676 1.987855 TGGCTCCGACGATTCCCTT 60.988 57.895 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 84 0.749454 GGTGATGGACTGATGGTGGC 60.749 60.000 0.00 0.00 0.00 5.01
90 94 0.460284 CACTACGCAGGGTGATGGAC 60.460 60.000 0.00 0.00 37.50 4.02
91 95 1.897423 CACTACGCAGGGTGATGGA 59.103 57.895 0.00 0.00 37.50 3.41
94 98 1.517832 GAGCACTACGCAGGGTGAT 59.482 57.895 0.00 0.00 46.13 3.06
95 99 2.646175 GGAGCACTACGCAGGGTGA 61.646 63.158 0.00 0.00 46.13 4.02
105 117 2.439507 GGAATCATTGGAGGGAGCACTA 59.560 50.000 0.00 0.00 0.00 2.74
141 154 7.495901 TGCAATACTTTCATTTCCTTTTGACA 58.504 30.769 0.00 0.00 0.00 3.58
154 167 3.475575 TGTCACAGCTGCAATACTTTCA 58.524 40.909 15.27 0.00 0.00 2.69
204 236 1.819632 CCATGCTTAGGACGTGCCC 60.820 63.158 2.38 0.00 37.37 5.36
214 246 5.077564 ACGTATCTCCTATGACCATGCTTA 58.922 41.667 0.00 0.00 0.00 3.09
226 258 2.103771 AGGCGACAGTACGTATCTCCTA 59.896 50.000 4.72 0.00 35.59 2.94
241 273 4.493708 GCTCCTAATTAAAAACGAGGCGAC 60.494 45.833 0.00 0.00 0.00 5.19
350 384 2.742710 GAAACCACGCGGGAAAAGCC 62.743 60.000 11.66 0.00 41.15 4.35
357 393 2.637025 CACTTGAAACCACGCGGG 59.363 61.111 12.47 6.05 44.81 6.13
376 412 3.589495 AACTACTACAAAGCGTCCCTC 57.411 47.619 0.00 0.00 0.00 4.30
499 539 1.284785 TCTTGTCCATTGCCCCCTAAG 59.715 52.381 0.00 0.00 0.00 2.18
515 556 0.321387 TGAAGAGGCTGCTGCTCTTG 60.321 55.000 24.16 0.00 37.06 3.02
523 564 1.783031 CGCCATGATGAAGAGGCTGC 61.783 60.000 0.00 0.00 44.85 5.25
524 565 0.179065 TCGCCATGATGAAGAGGCTG 60.179 55.000 0.00 0.00 44.85 4.85
527 568 3.949842 TCTATCGCCATGATGAAGAGG 57.050 47.619 0.00 0.00 37.99 3.69
532 573 3.452755 AACGTTCTATCGCCATGATGA 57.547 42.857 0.00 0.00 37.99 2.92
589 668 3.247411 TGATCATTGCCGCTTATACAACG 59.753 43.478 0.00 0.00 0.00 4.10
599 678 1.796617 GCTCTGTTTGATCATTGCCGC 60.797 52.381 0.00 0.00 0.00 6.53
601 680 3.015327 AGAGCTCTGTTTGATCATTGCC 58.985 45.455 17.42 0.00 0.00 4.52
603 682 4.517641 CGAGAGCTCTGTTTGATCATTG 57.482 45.455 23.91 0.00 0.00 2.82
622 702 1.454104 TTTTTCAGGAGGCTGGCGA 59.546 52.632 0.00 0.00 0.00 5.54
659 739 8.013947 GTCTAGACCGGTTAAAAAGAATTGTTC 58.986 37.037 9.42 0.00 0.00 3.18
661 741 6.429078 GGTCTAGACCGGTTAAAAAGAATTGT 59.571 38.462 25.83 0.00 42.29 2.71
683 763 6.828785 AGTTATGAATGTACATGAAAGGGGTC 59.171 38.462 9.63 0.99 0.00 4.46
704 786 5.188163 TCTCCCGTTTCATGGTATTCAGTTA 59.812 40.000 0.00 0.00 0.00 2.24
715 797 2.675348 GCTCTTTCTCTCCCGTTTCATG 59.325 50.000 0.00 0.00 0.00 3.07
719 801 0.966920 TCGCTCTTTCTCTCCCGTTT 59.033 50.000 0.00 0.00 0.00 3.60
792 875 4.202336 ACTGATGATGATGATTTCGAGCCT 60.202 41.667 0.00 0.00 0.00 4.58
795 878 7.307632 GGGTTTACTGATGATGATGATTTCGAG 60.308 40.741 0.00 0.00 0.00 4.04
798 881 7.284034 AGTGGGTTTACTGATGATGATGATTTC 59.716 37.037 0.00 0.00 0.00 2.17
800 883 6.666678 AGTGGGTTTACTGATGATGATGATT 58.333 36.000 0.00 0.00 0.00 2.57
858 944 1.133823 TGGTGCAATGGTGTTGAGAGT 60.134 47.619 0.00 0.00 0.00 3.24
863 949 0.038892 GAGCTGGTGCAATGGTGTTG 60.039 55.000 0.00 0.00 42.74 3.33
912 1000 8.659925 TCAGTGGAGTTTACGTTATTTTAACA 57.340 30.769 0.00 0.00 0.00 2.41
924 1012 7.361286 CCTTTTCTATTGCTCAGTGGAGTTTAC 60.361 40.741 0.00 0.00 43.37 2.01
955 1044 4.380233 CCTGCAAGAGCTTTAACATCAAGG 60.380 45.833 0.00 0.00 42.74 3.61
958 1047 3.084039 CCCTGCAAGAGCTTTAACATCA 58.916 45.455 0.00 0.00 42.74 3.07
994 1084 3.181434 TGTTGGTCCTTTTATGACAGCCT 60.181 43.478 0.00 0.00 34.36 4.58
998 1088 8.239038 TGTTTTATGTTGGTCCTTTTATGACA 57.761 30.769 0.00 0.00 34.36 3.58
1002 1092 7.606073 GCCAATGTTTTATGTTGGTCCTTTTAT 59.394 33.333 5.39 0.00 43.34 1.40
1018 1108 2.101640 AGGGTTCCTGCCAATGTTTT 57.898 45.000 0.00 0.00 29.57 2.43
1054 1144 1.450312 GAGGGGACGTTGATGCCTG 60.450 63.158 0.00 0.00 0.00 4.85
1083 1173 4.988598 AAGCGTCGCAGGTGTGGG 62.989 66.667 21.09 0.00 37.98 4.61
1135 1225 4.967084 TTTGTACAGCTTGGTTAGGAGA 57.033 40.909 0.00 0.00 0.00 3.71
1191 1281 1.825474 AGATGCGTTGGTGCTACTACT 59.175 47.619 0.00 0.00 35.36 2.57
1192 1282 2.194271 GAGATGCGTTGGTGCTACTAC 58.806 52.381 0.00 0.00 35.36 2.73
1193 1283 1.202256 CGAGATGCGTTGGTGCTACTA 60.202 52.381 0.00 0.00 35.36 1.82
1207 1299 3.197790 CCGGTGGCTTGCGAGATG 61.198 66.667 4.70 0.00 0.00 2.90
1235 1327 4.966366 GTCGTACTTGTATAGTTAGCCACG 59.034 45.833 0.00 0.00 38.33 4.94
1310 1402 0.104120 TGAGCCGTGGGAATCGTATG 59.896 55.000 0.00 0.00 0.00 2.39
1352 1444 1.523758 GCGATTCCACCATGGGTATC 58.476 55.000 18.09 11.41 38.32 2.24
1353 1445 0.110486 GGCGATTCCACCATGGGTAT 59.890 55.000 18.09 3.22 38.32 2.73
1354 1446 1.529796 GGCGATTCCACCATGGGTA 59.470 57.895 18.09 0.00 38.32 3.69
1438 1548 3.888323 TGCAACAAAGCAAGAACTGGATA 59.112 39.130 0.00 0.00 42.46 2.59
1461 1579 7.064609 CGAAGAACCATTCACATACTACATGTT 59.935 37.037 2.30 0.00 0.00 2.71
1487 1607 3.425162 ACTCAATCACCTTCCTCAACC 57.575 47.619 0.00 0.00 0.00 3.77
1490 1610 4.136796 CAACAACTCAATCACCTTCCTCA 58.863 43.478 0.00 0.00 0.00 3.86
1513 1633 2.422231 GCTGCAACACACCACCCAA 61.422 57.895 0.00 0.00 0.00 4.12
1514 1634 2.832661 GCTGCAACACACCACCCA 60.833 61.111 0.00 0.00 0.00 4.51
1515 1635 3.964875 CGCTGCAACACACCACCC 61.965 66.667 0.00 0.00 0.00 4.61
1616 1739 2.550277 TCCTCCATCTCCAGCAGTAA 57.450 50.000 0.00 0.00 0.00 2.24
1668 1799 0.872021 CACGCCCGACTAGCTCAATC 60.872 60.000 0.00 0.00 0.00 2.67
1673 1804 1.605058 AACATCACGCCCGACTAGCT 61.605 55.000 0.00 0.00 0.00 3.32
1674 1805 1.153628 AACATCACGCCCGACTAGC 60.154 57.895 0.00 0.00 0.00 3.42
1680 1811 1.813753 CCTACCAACATCACGCCCG 60.814 63.158 0.00 0.00 0.00 6.13
1698 1829 3.118592 AGCCAATTCCAGTGCTAGTACTC 60.119 47.826 10.90 0.00 30.97 2.59
1699 1830 2.840651 AGCCAATTCCAGTGCTAGTACT 59.159 45.455 7.78 7.78 30.97 2.73
1700 1831 2.939103 CAGCCAATTCCAGTGCTAGTAC 59.061 50.000 2.24 2.24 31.69 2.73
1721 1852 3.305964 GAACCAAAAAGTTCGCTTAGCC 58.694 45.455 0.00 0.00 37.04 3.93
1750 1881 3.123620 GCCCTCTTCACAGCTGCG 61.124 66.667 15.27 3.95 0.00 5.18
1909 2040 1.160137 CAAAGCTAGGATATGGCGGC 58.840 55.000 0.00 0.00 41.06 6.53
1916 2047 6.570571 GCACGTATCATCTCAAAGCTAGGATA 60.571 42.308 0.00 0.00 0.00 2.59
1942 2078 1.421485 GCGATCTCACCAGCAAACG 59.579 57.895 0.00 0.00 0.00 3.60
2216 2360 0.391793 GGAGGAAAGGGAAGCGACTG 60.392 60.000 0.00 0.00 0.00 3.51
2217 2361 1.554583 GGGAGGAAAGGGAAGCGACT 61.555 60.000 0.00 0.00 0.00 4.18
2236 2554 7.710907 TCGAGTAAATAATTGGACAAGAGATGG 59.289 37.037 0.00 0.00 0.00 3.51
2237 2555 8.648557 TCGAGTAAATAATTGGACAAGAGATG 57.351 34.615 0.00 0.00 0.00 2.90
2238 2556 9.482627 GATCGAGTAAATAATTGGACAAGAGAT 57.517 33.333 0.00 0.00 0.00 2.75
2281 3191 1.132500 CCTCCACACCTAATCTCCCC 58.868 60.000 0.00 0.00 0.00 4.81
2283 3193 2.838202 TCAACCTCCACACCTAATCTCC 59.162 50.000 0.00 0.00 0.00 3.71
2317 4197 0.815213 CTATGCCCCATGTGTCACCG 60.815 60.000 0.00 0.00 0.00 4.94
2354 5091 3.157087 CCAGGAGCTGTAACAATTTGGT 58.843 45.455 0.00 0.00 0.00 3.67
2363 5100 0.770557 ACCCAACCCAGGAGCTGTAA 60.771 55.000 0.00 0.00 0.00 2.41
2372 5109 0.890996 GACTGCAGAACCCAACCCAG 60.891 60.000 23.35 0.00 0.00 4.45
2378 5115 1.067295 AATGGAGACTGCAGAACCCA 58.933 50.000 23.35 21.99 0.00 4.51
2496 5454 3.909662 ATGAAGCACATGGACGCC 58.090 55.556 0.00 0.00 37.87 5.68
2589 5832 9.917129 TTTCATCAAGTTACTAATAGTTCACGA 57.083 29.630 0.00 0.00 0.00 4.35
2620 5942 2.024414 GGTACCTGATGAATTGCACCC 58.976 52.381 4.06 0.00 0.00 4.61
2621 5943 2.684881 CTGGTACCTGATGAATTGCACC 59.315 50.000 14.36 0.00 0.00 5.01
2896 6218 0.674895 GGCCTGAAGAACATCGCTGT 60.675 55.000 0.00 0.00 37.12 4.40
2899 6221 1.741770 ACGGCCTGAAGAACATCGC 60.742 57.895 0.00 0.00 0.00 4.58
2900 6222 0.670546 ACACGGCCTGAAGAACATCG 60.671 55.000 0.00 0.00 0.00 3.84
2901 6223 0.798776 CACACGGCCTGAAGAACATC 59.201 55.000 0.00 0.00 0.00 3.06
2951 6285 1.421382 CCGCTGCATTTTTCAACCAG 58.579 50.000 0.00 0.00 0.00 4.00
2954 6288 2.287909 TGTACCCGCTGCATTTTTCAAC 60.288 45.455 0.00 0.00 0.00 3.18
3157 6501 4.279420 ACCAGAAGGAGAAAACTTGCATTC 59.721 41.667 0.00 0.00 38.69 2.67
3243 6604 1.080093 GACGCGTCCATGAACTCCA 60.080 57.895 28.61 0.00 0.00 3.86
3631 6997 1.985895 TCTTTCTTCCAACCTCCTCCC 59.014 52.381 0.00 0.00 0.00 4.30
3725 7091 8.824159 CTGTAATGAGATATTTACAGGGTGAG 57.176 38.462 13.74 0.00 45.91 3.51
3749 7145 1.134818 TCGCATGATGCTACCGAAACT 60.135 47.619 16.17 0.00 42.25 2.66
3764 7160 2.031516 GTGCAGTCACAGCTCGCAT 61.032 57.895 0.00 0.00 42.66 4.73
3783 7179 8.260114 TCTTCTCATTTTTCCTTTGCTTTTTCT 58.740 29.630 0.00 0.00 0.00 2.52
3801 7197 3.944015 GCACAAGCCTGTTATCTTCTCAT 59.056 43.478 0.00 0.00 31.64 2.90
3805 7201 2.076863 ACGCACAAGCCTGTTATCTTC 58.923 47.619 0.00 0.00 37.52 2.87
3814 7210 1.609208 AAATTCAGACGCACAAGCCT 58.391 45.000 0.00 0.00 37.52 4.58
3878 7276 7.150640 GGAATCATCTCCTTAATTTTGGCATC 58.849 38.462 0.00 0.00 32.21 3.91
3882 7280 6.460123 CGGTGGAATCATCTCCTTAATTTTGG 60.460 42.308 0.00 0.00 36.35 3.28
3895 7293 3.009723 ACAACATCACGGTGGAATCATC 58.990 45.455 8.50 0.00 0.00 2.92
3924 7322 6.719829 AGTCCCTTACCAAAAAGATCGATTTT 59.280 34.615 0.00 0.00 33.86 1.82
3985 7383 2.032528 CTTTCAGCCTGCGGGTCA 59.967 61.111 14.55 0.00 34.45 4.02
3992 7390 1.025647 GCCTCTCTGCTTTCAGCCTG 61.026 60.000 0.00 0.00 41.51 4.85
3996 7394 1.083242 GCTCGCCTCTCTGCTTTCAG 61.083 60.000 0.00 0.00 41.67 3.02
4041 7440 1.639722 TGACCTCGTGGGAGATCAAA 58.360 50.000 8.63 0.00 39.96 2.69
4111 7510 7.499895 ACTCCAGTATTCTACTACAAGTCTAGC 59.500 40.741 0.00 0.00 37.23 3.42
4126 7525 5.578727 CACAAAGCAGAGTACTCCAGTATTC 59.421 44.000 19.38 1.87 37.47 1.75
4132 7531 3.133901 TCAACACAAAGCAGAGTACTCCA 59.866 43.478 19.38 0.00 0.00 3.86
4134 7533 3.185391 GCTCAACACAAAGCAGAGTACTC 59.815 47.826 15.41 15.41 38.42 2.59
4135 7534 3.134458 GCTCAACACAAAGCAGAGTACT 58.866 45.455 0.00 0.00 38.42 2.73
4212 7642 1.569653 AGTTGGAGTAGTAGGTGGCC 58.430 55.000 0.00 0.00 0.00 5.36
4279 7710 7.192232 TCATTATGATCTTGATATCTCGCGAG 58.808 38.462 30.03 30.03 0.00 5.03
4448 7917 2.256461 GCAACAGGCCAAGCGAAG 59.744 61.111 5.01 0.00 36.11 3.79
4449 7918 2.203337 AGCAACAGGCCAAGCGAA 60.203 55.556 5.01 0.00 46.50 4.70
4468 7937 1.002134 ATGGAGCCAACCGGACAAG 60.002 57.895 9.46 0.00 0.00 3.16
4505 7974 0.729816 GGTTCAGTCGTCGCAGAGAC 60.730 60.000 0.00 0.00 46.16 3.36
4515 7984 2.611518 GAGTTCCATCTGGTTCAGTCG 58.388 52.381 0.00 0.00 36.34 4.18
4551 8020 8.079211 TGCTGTTAATATACAGAGAAGAAGGT 57.921 34.615 9.41 0.00 46.72 3.50
4578 8047 3.053019 AGTCCTGGAGATCAGACATCAGA 60.053 47.826 0.00 0.00 46.18 3.27
4579 8048 3.298619 AGTCCTGGAGATCAGACATCAG 58.701 50.000 0.00 0.00 46.18 2.90
4580 8049 3.395054 AGTCCTGGAGATCAGACATCA 57.605 47.619 0.00 0.00 46.18 3.07
4581 8050 3.740764 GCAAGTCCTGGAGATCAGACATC 60.741 52.174 0.00 0.00 46.18 3.06
4582 8051 2.170187 GCAAGTCCTGGAGATCAGACAT 59.830 50.000 0.00 0.00 46.18 3.06
4583 8052 1.552337 GCAAGTCCTGGAGATCAGACA 59.448 52.381 0.00 0.00 46.18 3.41
4584 8053 1.552337 TGCAAGTCCTGGAGATCAGAC 59.448 52.381 0.00 0.00 46.18 3.51
4613 8082 1.439353 CGGCTCCATGATCGGTTTGG 61.439 60.000 0.00 0.00 0.00 3.28
4614 8083 0.461870 TCGGCTCCATGATCGGTTTG 60.462 55.000 0.00 0.00 0.00 2.93
4617 8086 2.815308 GTCGGCTCCATGATCGGT 59.185 61.111 0.00 0.00 0.00 4.69
4627 8096 1.066587 CTCCAATCCTCGTCGGCTC 59.933 63.158 0.00 0.00 0.00 4.70
4632 8101 0.179070 GCCTTCCTCCAATCCTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
4651 8120 2.126463 TTCTCAGTTCTCGCGCCG 60.126 61.111 0.00 0.00 0.00 6.46
4652 8121 1.807573 CCTTCTCAGTTCTCGCGCC 60.808 63.158 0.00 0.00 0.00 6.53
4665 8147 2.553247 GCCCAGCTGTTCTTAACCTTCT 60.553 50.000 13.81 0.00 0.00 2.85
4666 8148 1.813178 GCCCAGCTGTTCTTAACCTTC 59.187 52.381 13.81 0.00 0.00 3.46
4708 10498 3.192922 GACGCATGGTACGGTGGC 61.193 66.667 0.00 0.00 34.00 5.01
4726 10516 3.372206 GCTAGGCCACGCATAATTATCAG 59.628 47.826 5.01 0.00 0.00 2.90
4727 10517 3.007940 AGCTAGGCCACGCATAATTATCA 59.992 43.478 17.16 0.00 0.00 2.15
4737 10527 1.502190 GTTTCAAGCTAGGCCACGC 59.498 57.895 5.01 6.88 0.00 5.34
4809 10599 2.569059 CCGTAGTAGGTAGCACTAGCA 58.431 52.381 9.36 0.00 45.49 3.49
4810 10600 1.878734 CCCGTAGTAGGTAGCACTAGC 59.121 57.143 0.00 0.00 42.56 3.42
4811 10601 2.158696 ACCCCGTAGTAGGTAGCACTAG 60.159 54.545 0.00 0.00 33.52 2.57
4812 10602 1.846439 ACCCCGTAGTAGGTAGCACTA 59.154 52.381 0.00 0.00 33.52 2.74
4813 10603 0.627986 ACCCCGTAGTAGGTAGCACT 59.372 55.000 0.00 0.00 33.52 4.40
4814 10604 2.225467 CTACCCCGTAGTAGGTAGCAC 58.775 57.143 3.43 0.00 46.75 4.40
4855 10645 1.534175 CGGAGCCACGTGAGAATAGAC 60.534 57.143 19.30 0.00 0.00 2.59
4858 10648 0.454600 GTCGGAGCCACGTGAGAATA 59.545 55.000 19.30 0.00 34.94 1.75
4859 10649 1.215647 GTCGGAGCCACGTGAGAAT 59.784 57.895 19.30 0.00 34.94 2.40
4864 10654 2.126071 AATCGTCGGAGCCACGTG 60.126 61.111 9.08 9.08 38.45 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.