Multiple sequence alignment - TraesCS6A01G276100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G276100 chr6A 100.000 2520 0 0 1 2520 502928063 502930582 0.000000e+00 4654.0
1 TraesCS6A01G276100 chr6A 86.551 1041 77 20 968 1979 503229976 503230982 0.000000e+00 1088.0
2 TraesCS6A01G276100 chr6A 88.226 654 59 7 986 1633 503248753 503249394 0.000000e+00 765.0
3 TraesCS6A01G276100 chr6A 95.000 260 12 1 1720 1978 503249453 503249712 9.930000e-110 407.0
4 TraesCS6A01G276100 chr6A 88.755 249 22 2 1008 1256 516341753 516341995 1.730000e-77 300.0
5 TraesCS6A01G276100 chr6A 92.500 120 8 1 132 251 503229448 503229566 1.420000e-38 171.0
6 TraesCS6A01G276100 chr6A 92.593 108 8 0 2 109 185249915 185249808 3.970000e-34 156.0
7 TraesCS6A01G276100 chr6A 91.667 108 9 0 2 109 60429782 60429889 1.850000e-32 150.0
8 TraesCS6A01G276100 chr6A 100.000 59 0 0 2917 2975 502930979 502931037 3.140000e-20 110.0
9 TraesCS6A01G276100 chr6A 95.238 63 3 0 2003 2065 503231044 503231106 1.890000e-17 100.0
10 TraesCS6A01G276100 chr6D 90.204 2062 112 25 524 2518 362859045 362861083 0.000000e+00 2606.0
11 TraesCS6A01G276100 chr6D 93.515 1357 57 5 524 1865 362633931 362635271 0.000000e+00 1989.0
12 TraesCS6A01G276100 chr6D 89.767 1114 82 18 973 2080 362887991 362889078 0.000000e+00 1397.0
13 TraesCS6A01G276100 chr6D 86.305 1161 106 30 956 2079 362953814 362954958 0.000000e+00 1214.0
14 TraesCS6A01G276100 chr6D 84.593 701 61 13 1860 2518 362635372 362636067 0.000000e+00 652.0
15 TraesCS6A01G276100 chr6D 95.890 146 5 1 108 252 362633789 362633934 4.960000e-58 235.0
16 TraesCS6A01G276100 chr6D 85.446 213 29 2 2104 2314 362232349 362232561 1.390000e-53 220.0
17 TraesCS6A01G276100 chr6D 91.111 90 8 0 149 238 362953351 362953440 4.030000e-24 122.0
18 TraesCS6A01G276100 chr6D 91.667 48 3 1 2148 2195 362954965 362955011 6.880000e-07 65.8
19 TraesCS6A01G276100 chr6B 89.726 2044 122 31 532 2516 543825113 543827127 0.000000e+00 2531.0
20 TraesCS6A01G276100 chr6B 83.715 1136 104 39 973 2079 544092088 544093171 0.000000e+00 998.0
21 TraesCS6A01G276100 chr6B 85.019 514 55 10 1341 1833 543940450 543940962 1.230000e-138 503.0
22 TraesCS6A01G276100 chr6B 87.812 320 23 6 524 828 543909736 543910054 7.840000e-96 361.0
23 TraesCS6A01G276100 chr6B 88.559 236 19 6 1833 2064 543959893 543960124 2.260000e-71 279.0
24 TraesCS6A01G276100 chr6B 78.138 494 71 18 2058 2518 543960615 543961104 2.260000e-71 279.0
25 TraesCS6A01G276100 chr6B 92.806 139 7 2 115 252 543824977 543825113 6.500000e-47 198.0
26 TraesCS6A01G276100 chr6B 91.803 122 9 1 116 236 544091553 544091674 5.100000e-38 169.0
27 TraesCS6A01G276100 chr6B 92.105 114 8 1 139 252 543909627 543909739 3.070000e-35 159.0
28 TraesCS6A01G276100 chr2B 88.147 599 59 6 895 1493 774846094 774846680 0.000000e+00 702.0
29 TraesCS6A01G276100 chr5B 99.283 279 2 0 249 527 687998958 687998680 3.420000e-139 505.0
30 TraesCS6A01G276100 chr5B 98.239 284 5 0 251 534 595668496 595668213 5.730000e-137 497.0
31 TraesCS6A01G276100 chr5A 99.635 274 1 0 251 524 437291079 437290806 4.430000e-138 501.0
32 TraesCS6A01G276100 chr5A 93.519 108 7 0 2 109 119906883 119906776 8.530000e-36 161.0
33 TraesCS6A01G276100 chr3B 99.635 274 1 0 251 524 438378451 438378724 4.430000e-138 501.0
34 TraesCS6A01G276100 chr3B 97.578 289 7 0 243 531 1424093 1424381 2.060000e-136 496.0
35 TraesCS6A01G276100 chr1B 99.635 274 1 0 251 524 13064851 13065124 4.430000e-138 501.0
36 TraesCS6A01G276100 chr1B 98.577 281 3 1 251 530 593922791 593922511 2.060000e-136 496.0
37 TraesCS6A01G276100 chr2A 97.611 293 4 3 241 530 715927454 715927162 1.590000e-137 499.0
38 TraesCS6A01G276100 chr2A 91.743 109 9 0 2 110 479503593 479503485 5.140000e-33 152.0
39 TraesCS6A01G276100 chr1A 97.603 292 5 2 236 526 441762636 441762346 1.590000e-137 499.0
40 TraesCS6A01G276100 chr3A 94.444 108 6 0 2 109 215352225 215352332 1.830000e-37 167.0
41 TraesCS6A01G276100 chr3A 93.578 109 7 0 1 109 596505811 596505919 2.370000e-36 163.0
42 TraesCS6A01G276100 chr3A 91.743 109 9 0 2 110 571805898 571805790 5.140000e-33 152.0
43 TraesCS6A01G276100 chr7D 91.743 109 9 0 2 110 265887106 265887214 5.140000e-33 152.0
44 TraesCS6A01G276100 chr4A 91.743 109 9 0 1 109 683490843 683490951 5.140000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G276100 chr6A 502928063 502931037 2974 False 2382.000000 4654 100.000000 1 2975 2 chr6A.!!$F3 2974
1 TraesCS6A01G276100 chr6A 503248753 503249712 959 False 586.000000 765 91.613000 986 1978 2 chr6A.!!$F5 992
2 TraesCS6A01G276100 chr6A 503229448 503231106 1658 False 453.000000 1088 91.429667 132 2065 3 chr6A.!!$F4 1933
3 TraesCS6A01G276100 chr6D 362859045 362861083 2038 False 2606.000000 2606 90.204000 524 2518 1 chr6D.!!$F2 1994
4 TraesCS6A01G276100 chr6D 362887991 362889078 1087 False 1397.000000 1397 89.767000 973 2080 1 chr6D.!!$F3 1107
5 TraesCS6A01G276100 chr6D 362633789 362636067 2278 False 958.666667 1989 91.332667 108 2518 3 chr6D.!!$F4 2410
6 TraesCS6A01G276100 chr6D 362953351 362955011 1660 False 467.266667 1214 89.694333 149 2195 3 chr6D.!!$F5 2046
7 TraesCS6A01G276100 chr6B 543824977 543827127 2150 False 1364.500000 2531 91.266000 115 2516 2 chr6B.!!$F2 2401
8 TraesCS6A01G276100 chr6B 544091553 544093171 1618 False 583.500000 998 87.759000 116 2079 2 chr6B.!!$F5 1963
9 TraesCS6A01G276100 chr6B 543940450 543940962 512 False 503.000000 503 85.019000 1341 1833 1 chr6B.!!$F1 492
10 TraesCS6A01G276100 chr6B 543959893 543961104 1211 False 279.000000 279 83.348500 1833 2518 2 chr6B.!!$F4 685
11 TraesCS6A01G276100 chr2B 774846094 774846680 586 False 702.000000 702 88.147000 895 1493 1 chr2B.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 410 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 3047 0.041312 CACAAAGAACGCTCGTTGGG 60.041 55.0 16.82 10.38 43.08 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.674263 TCATTAATTGGATGTTTTTGCAAACT 57.326 26.923 12.39 0.00 42.61 2.66
26 27 9.770097 TCATTAATTGGATGTTTTTGCAAACTA 57.230 25.926 12.39 0.00 42.61 2.24
27 28 9.810231 CATTAATTGGATGTTTTTGCAAACTAC 57.190 29.630 12.39 13.36 42.61 2.73
28 29 8.948631 TTAATTGGATGTTTTTGCAAACTACA 57.051 26.923 21.80 21.80 42.61 2.74
29 30 7.856145 AATTGGATGTTTTTGCAAACTACAA 57.144 28.000 22.81 16.05 42.61 2.41
30 31 7.856145 ATTGGATGTTTTTGCAAACTACAAA 57.144 28.000 22.81 15.93 42.61 2.83
31 32 7.672983 TTGGATGTTTTTGCAAACTACAAAA 57.327 28.000 22.81 16.58 43.33 2.44
60 61 8.915057 ATTTTACCACTCATCATCTATCTTGG 57.085 34.615 0.00 0.00 0.00 3.61
61 62 7.437713 TTTACCACTCATCATCTATCTTGGT 57.562 36.000 0.00 0.00 39.44 3.67
62 63 5.965033 ACCACTCATCATCTATCTTGGTT 57.035 39.130 0.00 0.00 31.99 3.67
63 64 5.678583 ACCACTCATCATCTATCTTGGTTG 58.321 41.667 0.00 0.00 31.99 3.77
64 65 5.061853 CCACTCATCATCTATCTTGGTTGG 58.938 45.833 0.00 0.00 0.00 3.77
65 66 5.397221 CCACTCATCATCTATCTTGGTTGGT 60.397 44.000 0.00 0.00 0.00 3.67
66 67 5.526479 CACTCATCATCTATCTTGGTTGGTG 59.474 44.000 0.00 0.00 0.00 4.17
67 68 5.426509 ACTCATCATCTATCTTGGTTGGTGA 59.573 40.000 0.00 0.00 0.00 4.02
68 69 5.922053 TCATCATCTATCTTGGTTGGTGAG 58.078 41.667 0.00 0.00 0.00 3.51
69 70 5.662657 TCATCATCTATCTTGGTTGGTGAGA 59.337 40.000 0.00 0.00 0.00 3.27
70 71 6.328410 TCATCATCTATCTTGGTTGGTGAGAT 59.672 38.462 0.00 0.00 34.67 2.75
71 72 6.566079 TCATCTATCTTGGTTGGTGAGATT 57.434 37.500 0.00 0.00 32.68 2.40
72 73 6.962182 TCATCTATCTTGGTTGGTGAGATTT 58.038 36.000 0.00 0.00 32.68 2.17
73 74 7.405292 TCATCTATCTTGGTTGGTGAGATTTT 58.595 34.615 0.00 0.00 32.68 1.82
74 75 7.890127 TCATCTATCTTGGTTGGTGAGATTTTT 59.110 33.333 0.00 0.00 32.68 1.94
75 76 7.452880 TCTATCTTGGTTGGTGAGATTTTTG 57.547 36.000 0.00 0.00 32.68 2.44
76 77 7.230747 TCTATCTTGGTTGGTGAGATTTTTGA 58.769 34.615 0.00 0.00 32.68 2.69
77 78 6.729690 ATCTTGGTTGGTGAGATTTTTGAA 57.270 33.333 0.00 0.00 0.00 2.69
78 79 6.729690 TCTTGGTTGGTGAGATTTTTGAAT 57.270 33.333 0.00 0.00 0.00 2.57
79 80 7.123355 TCTTGGTTGGTGAGATTTTTGAATT 57.877 32.000 0.00 0.00 0.00 2.17
80 81 6.985645 TCTTGGTTGGTGAGATTTTTGAATTG 59.014 34.615 0.00 0.00 0.00 2.32
81 82 6.477053 TGGTTGGTGAGATTTTTGAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
82 83 6.514947 TGGTTGGTGAGATTTTTGAATTGAG 58.485 36.000 0.00 0.00 0.00 3.02
83 84 6.098124 TGGTTGGTGAGATTTTTGAATTGAGT 59.902 34.615 0.00 0.00 0.00 3.41
84 85 6.642540 GGTTGGTGAGATTTTTGAATTGAGTC 59.357 38.462 0.00 0.00 0.00 3.36
85 86 7.428826 GTTGGTGAGATTTTTGAATTGAGTCT 58.571 34.615 0.00 0.00 0.00 3.24
86 87 7.587037 TGGTGAGATTTTTGAATTGAGTCTT 57.413 32.000 0.00 0.00 0.00 3.01
87 88 8.690203 TGGTGAGATTTTTGAATTGAGTCTTA 57.310 30.769 0.00 0.00 0.00 2.10
88 89 9.300681 TGGTGAGATTTTTGAATTGAGTCTTAT 57.699 29.630 0.00 0.00 0.00 1.73
117 119 0.250513 AAAAGGGAGTAGCTGAGCCG 59.749 55.000 0.00 0.00 0.00 5.52
227 229 4.060667 CCTCCCCGCCACCCAAAT 62.061 66.667 0.00 0.00 0.00 2.32
248 250 1.292541 GTCGCCGTTCCTCTTCCTT 59.707 57.895 0.00 0.00 0.00 3.36
249 251 0.736672 GTCGCCGTTCCTCTTCCTTC 60.737 60.000 0.00 0.00 0.00 3.46
250 252 1.183030 TCGCCGTTCCTCTTCCTTCA 61.183 55.000 0.00 0.00 0.00 3.02
251 253 0.737715 CGCCGTTCCTCTTCCTTCAG 60.738 60.000 0.00 0.00 0.00 3.02
252 254 0.391793 GCCGTTCCTCTTCCTTCAGG 60.392 60.000 0.00 0.00 0.00 3.86
253 255 0.391793 CCGTTCCTCTTCCTTCAGGC 60.392 60.000 0.00 0.00 34.44 4.85
254 256 0.610687 CGTTCCTCTTCCTTCAGGCT 59.389 55.000 0.00 0.00 34.44 4.58
255 257 1.674221 CGTTCCTCTTCCTTCAGGCTG 60.674 57.143 8.58 8.58 34.44 4.85
256 258 0.987294 TTCCTCTTCCTTCAGGCTGG 59.013 55.000 15.73 0.00 34.44 4.85
257 259 0.178891 TCCTCTTCCTTCAGGCTGGT 60.179 55.000 15.73 0.00 34.44 4.00
258 260 0.251634 CCTCTTCCTTCAGGCTGGTC 59.748 60.000 15.73 0.00 34.44 4.02
259 261 0.979665 CTCTTCCTTCAGGCTGGTCA 59.020 55.000 15.73 0.00 34.44 4.02
260 262 0.687354 TCTTCCTTCAGGCTGGTCAC 59.313 55.000 15.73 0.00 34.44 3.67
261 263 0.397941 CTTCCTTCAGGCTGGTCACA 59.602 55.000 15.73 0.00 34.44 3.58
262 264 0.843309 TTCCTTCAGGCTGGTCACAA 59.157 50.000 15.73 0.00 34.44 3.33
263 265 1.067295 TCCTTCAGGCTGGTCACAAT 58.933 50.000 15.73 0.00 34.44 2.71
264 266 1.171308 CCTTCAGGCTGGTCACAATG 58.829 55.000 15.73 0.00 0.00 2.82
265 267 1.171308 CTTCAGGCTGGTCACAATGG 58.829 55.000 15.73 0.00 0.00 3.16
266 268 0.251297 TTCAGGCTGGTCACAATGGG 60.251 55.000 15.73 0.00 0.00 4.00
267 269 2.036256 AGGCTGGTCACAATGGGC 59.964 61.111 0.00 0.00 0.00 5.36
268 270 2.283101 GGCTGGTCACAATGGGCA 60.283 61.111 0.00 0.00 0.00 5.36
269 271 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
270 272 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
271 273 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
272 274 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
273 275 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
274 276 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
275 277 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
276 278 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
277 279 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
278 280 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
279 281 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
280 282 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
281 283 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
282 284 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
283 285 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
284 286 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
285 287 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
286 288 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
287 289 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
288 290 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
289 291 6.037281 GGGCAAGAACATAAGCTAGTAACTTC 59.963 42.308 0.00 0.00 0.00 3.01
290 292 6.594159 GGCAAGAACATAAGCTAGTAACTTCA 59.406 38.462 0.00 0.00 0.00 3.02
291 293 7.413109 GGCAAGAACATAAGCTAGTAACTTCAC 60.413 40.741 0.00 0.00 0.00 3.18
292 294 7.117812 GCAAGAACATAAGCTAGTAACTTCACA 59.882 37.037 0.00 0.00 0.00 3.58
293 295 8.436200 CAAGAACATAAGCTAGTAACTTCACAC 58.564 37.037 0.00 0.00 0.00 3.82
294 296 7.897864 AGAACATAAGCTAGTAACTTCACACT 58.102 34.615 0.00 0.00 0.00 3.55
295 297 8.368668 AGAACATAAGCTAGTAACTTCACACTT 58.631 33.333 0.00 0.00 0.00 3.16
296 298 8.535690 AACATAAGCTAGTAACTTCACACTTC 57.464 34.615 0.00 0.00 0.00 3.01
297 299 7.097834 ACATAAGCTAGTAACTTCACACTTCC 58.902 38.462 0.00 0.00 0.00 3.46
298 300 4.538746 AGCTAGTAACTTCACACTTCCC 57.461 45.455 0.00 0.00 0.00 3.97
299 301 4.161102 AGCTAGTAACTTCACACTTCCCT 58.839 43.478 0.00 0.00 0.00 4.20
300 302 5.331069 AGCTAGTAACTTCACACTTCCCTA 58.669 41.667 0.00 0.00 0.00 3.53
301 303 5.419471 AGCTAGTAACTTCACACTTCCCTAG 59.581 44.000 0.00 0.00 0.00 3.02
302 304 5.418209 GCTAGTAACTTCACACTTCCCTAGA 59.582 44.000 0.00 0.00 0.00 2.43
303 305 5.725325 AGTAACTTCACACTTCCCTAGAC 57.275 43.478 0.00 0.00 0.00 2.59
304 306 5.395611 AGTAACTTCACACTTCCCTAGACT 58.604 41.667 0.00 0.00 0.00 3.24
305 307 6.550163 AGTAACTTCACACTTCCCTAGACTA 58.450 40.000 0.00 0.00 0.00 2.59
306 308 7.183460 AGTAACTTCACACTTCCCTAGACTAT 58.817 38.462 0.00 0.00 0.00 2.12
307 309 5.923733 ACTTCACACTTCCCTAGACTATG 57.076 43.478 0.00 0.00 0.00 2.23
308 310 5.334421 ACTTCACACTTCCCTAGACTATGT 58.666 41.667 0.00 0.00 0.00 2.29
309 311 5.780793 ACTTCACACTTCCCTAGACTATGTT 59.219 40.000 0.00 0.00 0.00 2.71
310 312 6.952358 ACTTCACACTTCCCTAGACTATGTTA 59.048 38.462 0.00 0.00 0.00 2.41
311 313 6.770746 TCACACTTCCCTAGACTATGTTAC 57.229 41.667 0.00 0.00 0.00 2.50
312 314 6.491383 TCACACTTCCCTAGACTATGTTACT 58.509 40.000 0.00 0.00 0.00 2.24
313 315 7.636579 TCACACTTCCCTAGACTATGTTACTA 58.363 38.462 0.00 0.00 0.00 1.82
314 316 7.555554 TCACACTTCCCTAGACTATGTTACTAC 59.444 40.741 0.00 0.00 0.00 2.73
315 317 6.832900 ACACTTCCCTAGACTATGTTACTACC 59.167 42.308 0.00 0.00 0.00 3.18
316 318 7.061688 CACTTCCCTAGACTATGTTACTACCT 58.938 42.308 0.00 0.00 0.00 3.08
317 319 7.229106 CACTTCCCTAGACTATGTTACTACCTC 59.771 44.444 0.00 0.00 0.00 3.85
318 320 6.198237 TCCCTAGACTATGTTACTACCTCC 57.802 45.833 0.00 0.00 0.00 4.30
319 321 5.673574 TCCCTAGACTATGTTACTACCTCCA 59.326 44.000 0.00 0.00 0.00 3.86
320 322 6.334774 TCCCTAGACTATGTTACTACCTCCAT 59.665 42.308 0.00 0.00 0.00 3.41
321 323 7.518653 TCCCTAGACTATGTTACTACCTCCATA 59.481 40.741 0.00 0.00 0.00 2.74
322 324 7.830201 CCCTAGACTATGTTACTACCTCCATAG 59.170 44.444 0.00 0.00 41.50 2.23
324 326 9.221933 CTAGACTATGTTACTACCTCCATAGTG 57.778 40.741 14.01 0.00 46.02 2.74
325 327 7.005296 AGACTATGTTACTACCTCCATAGTGG 58.995 42.308 14.01 0.00 46.02 4.00
326 328 6.075984 ACTATGTTACTACCTCCATAGTGGG 58.924 44.000 9.63 0.00 44.96 4.61
327 329 4.341863 TGTTACTACCTCCATAGTGGGT 57.658 45.455 0.00 0.00 38.32 4.51
328 330 5.470755 TGTTACTACCTCCATAGTGGGTA 57.529 43.478 0.00 0.00 38.32 3.69
331 333 3.897657 CTACCTCCATAGTGGGTAGGA 57.102 52.381 9.90 0.00 45.09 2.94
332 334 4.194678 CTACCTCCATAGTGGGTAGGAA 57.805 50.000 9.90 0.00 45.09 3.36
333 335 2.760581 ACCTCCATAGTGGGTAGGAAC 58.239 52.381 9.90 0.00 38.32 3.62
334 336 2.045326 ACCTCCATAGTGGGTAGGAACA 59.955 50.000 9.90 0.00 38.32 3.18
335 337 3.311402 ACCTCCATAGTGGGTAGGAACAT 60.311 47.826 9.90 0.00 38.32 2.71
336 338 3.325135 CCTCCATAGTGGGTAGGAACATC 59.675 52.174 0.00 0.00 38.32 3.06
337 339 4.227197 CTCCATAGTGGGTAGGAACATCT 58.773 47.826 0.00 0.00 38.32 2.90
338 340 5.394738 CTCCATAGTGGGTAGGAACATCTA 58.605 45.833 0.00 0.00 38.32 1.98
339 341 5.977533 TCCATAGTGGGTAGGAACATCTAT 58.022 41.667 0.00 0.00 38.32 1.98
340 342 5.780282 TCCATAGTGGGTAGGAACATCTATG 59.220 44.000 0.00 0.00 38.32 2.23
341 343 5.544176 CCATAGTGGGTAGGAACATCTATGT 59.456 44.000 0.00 0.00 36.83 2.29
342 344 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
343 345 7.093727 CCATAGTGGGTAGGAACATCTATGTAG 60.094 44.444 0.00 0.00 35.14 2.74
344 346 5.778542 AGTGGGTAGGAACATCTATGTAGT 58.221 41.667 0.00 0.00 40.80 2.73
345 347 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
346 348 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
347 349 5.597182 TGGGTAGGAACATCTATGTAGTGTC 59.403 44.000 0.00 0.00 40.80 3.67
348 350 5.597182 GGGTAGGAACATCTATGTAGTGTCA 59.403 44.000 0.00 0.00 40.80 3.58
349 351 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
350 352 7.148641 GGTAGGAACATCTATGTAGTGTCATG 58.851 42.308 0.00 0.00 40.80 3.07
351 353 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
352 354 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
353 355 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
354 356 6.484643 GGAACATCTATGTAGTGTCATGCAAT 59.515 38.462 0.00 0.00 40.80 3.56
355 357 6.856135 ACATCTATGTAGTGTCATGCAATG 57.144 37.500 0.00 0.00 42.25 2.82
356 358 6.585416 ACATCTATGTAGTGTCATGCAATGA 58.415 36.000 0.00 0.00 45.34 2.57
391 393 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
392 394 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
393 395 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
394 396 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
395 397 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
396 398 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
397 399 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
398 400 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
399 401 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
400 402 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
401 403 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
402 404 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
403 405 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
404 406 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
405 407 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
406 408 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
407 409 1.800586 CTTGGAGTGTGTGATGTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
408 410 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
409 411 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.000 0.00 0.00 0.00 5.28
410 412 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
411 413 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
412 414 2.735134 GAGTGTGTGATGTTCCGGTAAC 59.265 50.000 0.00 5.56 38.67 2.50
413 415 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
414 416 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
415 417 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
416 418 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
417 419 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
418 420 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
419 421 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
420 422 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
421 423 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
423 425 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
432 434 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
433 435 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
434 436 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
435 437 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
436 438 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
437 439 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
438 440 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
439 441 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
440 442 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
441 443 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
442 444 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
443 445 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
444 446 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
445 447 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
446 448 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
447 449 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
448 450 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
449 451 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
450 452 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
451 453 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
452 454 7.550906 ACAAGCACCTCTCTCTTCATTAAATAC 59.449 37.037 0.00 0.00 0.00 1.89
453 455 7.187824 AGCACCTCTCTCTTCATTAAATACA 57.812 36.000 0.00 0.00 0.00 2.29
454 456 7.800092 AGCACCTCTCTCTTCATTAAATACAT 58.200 34.615 0.00 0.00 0.00 2.29
455 457 7.714377 AGCACCTCTCTCTTCATTAAATACATG 59.286 37.037 0.00 0.00 0.00 3.21
456 458 7.519649 GCACCTCTCTCTTCATTAAATACATGC 60.520 40.741 0.00 0.00 0.00 4.06
457 459 6.995091 ACCTCTCTCTTCATTAAATACATGCC 59.005 38.462 0.00 0.00 0.00 4.40
458 460 6.994496 CCTCTCTCTTCATTAAATACATGCCA 59.006 38.462 0.00 0.00 0.00 4.92
459 461 7.041508 CCTCTCTCTTCATTAAATACATGCCAC 60.042 40.741 0.00 0.00 0.00 5.01
460 462 7.337938 TCTCTCTTCATTAAATACATGCCACA 58.662 34.615 0.00 0.00 0.00 4.17
461 463 7.994911 TCTCTCTTCATTAAATACATGCCACAT 59.005 33.333 0.00 0.00 0.00 3.21
462 464 9.276590 CTCTCTTCATTAAATACATGCCACATA 57.723 33.333 0.00 0.00 0.00 2.29
463 465 9.625747 TCTCTTCATTAAATACATGCCACATAA 57.374 29.630 0.00 0.00 0.00 1.90
464 466 9.888878 CTCTTCATTAAATACATGCCACATAAG 57.111 33.333 0.00 0.00 0.00 1.73
465 467 8.352201 TCTTCATTAAATACATGCCACATAAGC 58.648 33.333 0.00 0.00 0.00 3.09
466 468 7.579761 TCATTAAATACATGCCACATAAGCA 57.420 32.000 0.00 0.00 45.94 3.91
467 469 8.005192 TCATTAAATACATGCCACATAAGCAA 57.995 30.769 0.00 0.00 44.83 3.91
468 470 8.473219 TCATTAAATACATGCCACATAAGCAAA 58.527 29.630 0.00 0.00 44.83 3.68
469 471 8.757789 CATTAAATACATGCCACATAAGCAAAG 58.242 33.333 0.00 0.00 44.83 2.77
470 472 5.920193 AATACATGCCACATAAGCAAAGT 57.080 34.783 0.00 0.00 44.83 2.66
471 473 5.920193 ATACATGCCACATAAGCAAAGTT 57.080 34.783 0.00 0.00 44.83 2.66
472 474 3.916761 ACATGCCACATAAGCAAAGTTG 58.083 40.909 0.00 0.00 44.83 3.16
473 475 3.321682 ACATGCCACATAAGCAAAGTTGT 59.678 39.130 0.00 0.00 44.83 3.32
474 476 4.522405 ACATGCCACATAAGCAAAGTTGTA 59.478 37.500 0.00 0.00 44.83 2.41
475 477 5.185635 ACATGCCACATAAGCAAAGTTGTAT 59.814 36.000 0.00 0.00 44.83 2.29
476 478 5.720371 TGCCACATAAGCAAAGTTGTATT 57.280 34.783 0.00 0.00 37.28 1.89
477 479 5.468592 TGCCACATAAGCAAAGTTGTATTG 58.531 37.500 0.00 0.00 37.28 1.90
478 480 4.864247 GCCACATAAGCAAAGTTGTATTGG 59.136 41.667 0.00 0.00 0.00 3.16
479 481 5.336372 GCCACATAAGCAAAGTTGTATTGGA 60.336 40.000 0.00 0.00 0.00 3.53
480 482 6.324819 CCACATAAGCAAAGTTGTATTGGAG 58.675 40.000 0.00 0.00 0.00 3.86
481 483 6.071952 CCACATAAGCAAAGTTGTATTGGAGT 60.072 38.462 0.00 0.00 0.00 3.85
482 484 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
483 485 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
484 486 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
485 487 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
486 488 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
487 489 4.036262 GCAAAGTTGTATTGGAGTGTGTGA 59.964 41.667 0.00 0.00 0.00 3.58
488 490 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
489 491 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
490 492 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
491 493 5.376625 AGTTGTATTGGAGTGTGTGATGTT 58.623 37.500 0.00 0.00 0.00 2.71
492 494 6.530120 AGTTGTATTGGAGTGTGTGATGTTA 58.470 36.000 0.00 0.00 0.00 2.41
493 495 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
494 496 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
495 497 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
501 503 6.026947 GAGTGTGTGATGTTACTCCTAAGT 57.973 41.667 0.00 0.00 39.66 2.24
502 504 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
503 505 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
504 506 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
505 507 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
506 508 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
507 509 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
508 510 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
509 511 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
510 512 3.181404 TGTTACTCCTAAGTTCCTCCCCA 60.181 47.826 0.00 0.00 36.92 4.96
511 513 1.954035 ACTCCTAAGTTCCTCCCCAC 58.046 55.000 0.00 0.00 28.74 4.61
512 514 1.437547 ACTCCTAAGTTCCTCCCCACT 59.562 52.381 0.00 0.00 28.74 4.00
513 515 1.834263 CTCCTAAGTTCCTCCCCACTG 59.166 57.143 0.00 0.00 0.00 3.66
514 516 1.151413 TCCTAAGTTCCTCCCCACTGT 59.849 52.381 0.00 0.00 0.00 3.55
515 517 1.279271 CCTAAGTTCCTCCCCACTGTG 59.721 57.143 0.00 0.00 0.00 3.66
516 518 2.257207 CTAAGTTCCTCCCCACTGTGA 58.743 52.381 9.86 0.00 0.00 3.58
517 519 0.765510 AAGTTCCTCCCCACTGTGAC 59.234 55.000 9.86 0.00 0.00 3.67
518 520 1.128188 AGTTCCTCCCCACTGTGACC 61.128 60.000 9.86 0.00 0.00 4.02
519 521 1.074090 TTCCTCCCCACTGTGACCA 60.074 57.895 9.86 0.00 0.00 4.02
520 522 1.127567 TTCCTCCCCACTGTGACCAG 61.128 60.000 9.86 1.37 44.68 4.00
521 523 2.348998 CTCCCCACTGTGACCAGC 59.651 66.667 9.86 0.00 42.81 4.85
522 524 3.249189 TCCCCACTGTGACCAGCC 61.249 66.667 9.86 0.00 42.81 4.85
547 549 2.045926 GGTTGGATCCGCACTGCT 60.046 61.111 7.39 0.00 0.00 4.24
572 574 2.307098 ACAATCCCTCCTTCAGTCCTTG 59.693 50.000 0.00 0.00 0.00 3.61
929 985 8.409358 TCTGCTAGATTACATCACATAGCTAA 57.591 34.615 0.00 0.00 37.21 3.09
964 1020 1.897398 GCCACGCACGGAAACTACTG 61.897 60.000 0.00 0.00 0.00 2.74
1037 1100 1.206745 CCGATGGTGATGTACGACGC 61.207 60.000 0.00 0.00 0.00 5.19
1398 1467 0.607620 GCTTCAGCCTGACTCAGAGT 59.392 55.000 1.46 1.46 32.44 3.24
1449 1518 3.642503 TTCCCGGGCACGTCCAAT 61.643 61.111 18.49 0.00 38.78 3.16
1665 1774 5.063564 ACCGAATCTTTTTACTGCTCGAATC 59.936 40.000 0.00 0.00 0.00 2.52
1672 1781 9.778741 ATCTTTTTACTGCTCGAATCCATTATA 57.221 29.630 0.00 0.00 0.00 0.98
1696 1806 1.253100 GCGTTTCCTTGGGGATTTCA 58.747 50.000 0.00 0.00 41.87 2.69
1697 1807 1.616374 GCGTTTCCTTGGGGATTTCAA 59.384 47.619 0.00 0.00 41.87 2.69
1699 1809 3.493524 GCGTTTCCTTGGGGATTTCAAAA 60.494 43.478 0.00 0.00 41.87 2.44
1724 1850 4.331356 ACGTACCGTTCTGTGTGC 57.669 55.556 0.00 0.00 36.35 4.57
1933 2165 3.322466 CCCAGGTGAAGGAGGCGT 61.322 66.667 0.00 0.00 0.00 5.68
2074 2851 3.303990 GGAGGCATATGCAAACGTACATG 60.304 47.826 28.07 0.00 44.36 3.21
2090 2867 3.618690 ACATGCTCTGGTTTACTCTCC 57.381 47.619 0.00 0.00 0.00 3.71
2101 2878 5.343715 TGGTTTACTCTCCCCACTATGTAA 58.656 41.667 0.00 0.00 0.00 2.41
2135 2919 6.271624 AGGGGACTTAGGTTGCGTTATATATT 59.728 38.462 0.00 0.00 37.44 1.28
2155 2939 3.443099 TCGTACTTGATCTGATGCAGG 57.557 47.619 0.00 0.00 31.51 4.85
2260 3049 8.764558 AGTTAATTAAATTGAACCCCAATACCC 58.235 33.333 0.00 0.00 44.28 3.69
2262 3051 7.575499 AATTAAATTGAACCCCAATACCCAA 57.425 32.000 0.00 0.00 44.28 4.12
2266 3055 1.003812 TGAACCCCAATACCCAACGAG 59.996 52.381 0.00 0.00 0.00 4.18
2268 3057 1.817941 CCCCAATACCCAACGAGCG 60.818 63.158 0.00 0.00 0.00 5.03
2272 3061 1.674817 CCAATACCCAACGAGCGTTCT 60.675 52.381 5.15 0.00 36.00 3.01
2273 3062 2.073816 CAATACCCAACGAGCGTTCTT 58.926 47.619 5.15 0.00 36.00 2.52
2290 3079 1.203112 TCTTTGTGGGGCTTGGCAATA 60.203 47.619 0.00 0.00 0.00 1.90
2291 3080 1.622811 CTTTGTGGGGCTTGGCAATAA 59.377 47.619 0.00 0.00 0.00 1.40
2314 3103 4.230657 CGAACGTTTTCCATGGCAAATTA 58.769 39.130 12.82 0.00 0.00 1.40
2349 3154 5.801947 CCAATGTCGAAACTGGATTTGAATC 59.198 40.000 0.00 0.00 34.66 2.52
2358 3163 7.065085 CGAAACTGGATTTGAATCTACATGACT 59.935 37.037 0.00 0.00 35.73 3.41
2359 3164 9.383519 GAAACTGGATTTGAATCTACATGACTA 57.616 33.333 0.00 0.00 35.73 2.59
2360 3165 9.739276 AAACTGGATTTGAATCTACATGACTAA 57.261 29.630 0.00 0.00 35.73 2.24
2361 3166 9.911788 AACTGGATTTGAATCTACATGACTAAT 57.088 29.630 0.00 0.00 35.73 1.73
2362 3167 9.334947 ACTGGATTTGAATCTACATGACTAATG 57.665 33.333 0.00 0.00 37.64 1.90
2363 3168 8.158169 TGGATTTGAATCTACATGACTAATGC 57.842 34.615 0.00 0.00 36.37 3.56
2364 3169 7.994911 TGGATTTGAATCTACATGACTAATGCT 59.005 33.333 0.00 0.00 36.37 3.79
2365 3170 8.844244 GGATTTGAATCTACATGACTAATGCTT 58.156 33.333 0.00 0.00 36.37 3.91
2366 3171 9.661187 GATTTGAATCTACATGACTAATGCTTG 57.339 33.333 0.00 0.00 34.70 4.01
2427 3253 7.787028 TGCCTTTATAAAAGGTTGTTTTCAGT 58.213 30.769 17.40 0.00 39.60 3.41
2428 3254 8.915036 TGCCTTTATAAAAGGTTGTTTTCAGTA 58.085 29.630 17.40 0.00 39.60 2.74
2429 3255 9.188588 GCCTTTATAAAAGGTTGTTTTCAGTAC 57.811 33.333 17.40 0.00 39.60 2.73
2444 3270 6.938698 TTTCAGTACTTAGGGAATACCACA 57.061 37.500 0.00 0.00 43.89 4.17
2459 3285 6.201615 GGAATACCACAAGTACGCTAATTACC 59.798 42.308 0.00 0.00 32.46 2.85
2461 3287 3.261390 ACCACAAGTACGCTAATTACCCA 59.739 43.478 0.00 0.00 0.00 4.51
2464 3290 4.873827 CACAAGTACGCTAATTACCCATGT 59.126 41.667 0.00 0.00 0.00 3.21
2935 3767 2.787601 TATCGTTATCTCACCCGCAC 57.212 50.000 0.00 0.00 0.00 5.34
2936 3768 0.821517 ATCGTTATCTCACCCGCACA 59.178 50.000 0.00 0.00 0.00 4.57
2937 3769 0.108992 TCGTTATCTCACCCGCACAC 60.109 55.000 0.00 0.00 0.00 3.82
2938 3770 0.108804 CGTTATCTCACCCGCACACT 60.109 55.000 0.00 0.00 0.00 3.55
2939 3771 1.671850 CGTTATCTCACCCGCACACTT 60.672 52.381 0.00 0.00 0.00 3.16
2940 3772 2.000447 GTTATCTCACCCGCACACTTC 59.000 52.381 0.00 0.00 0.00 3.01
2941 3773 1.557099 TATCTCACCCGCACACTTCT 58.443 50.000 0.00 0.00 0.00 2.85
2942 3774 0.687354 ATCTCACCCGCACACTTCTT 59.313 50.000 0.00 0.00 0.00 2.52
2943 3775 0.033504 TCTCACCCGCACACTTCTTC 59.966 55.000 0.00 0.00 0.00 2.87
2944 3776 0.034059 CTCACCCGCACACTTCTTCT 59.966 55.000 0.00 0.00 0.00 2.85
2945 3777 1.272490 CTCACCCGCACACTTCTTCTA 59.728 52.381 0.00 0.00 0.00 2.10
2946 3778 1.272490 TCACCCGCACACTTCTTCTAG 59.728 52.381 0.00 0.00 0.00 2.43
2947 3779 0.037232 ACCCGCACACTTCTTCTAGC 60.037 55.000 0.00 0.00 0.00 3.42
2948 3780 0.247736 CCCGCACACTTCTTCTAGCT 59.752 55.000 0.00 0.00 0.00 3.32
2949 3781 1.338200 CCCGCACACTTCTTCTAGCTT 60.338 52.381 0.00 0.00 0.00 3.74
2950 3782 1.996191 CCGCACACTTCTTCTAGCTTC 59.004 52.381 0.00 0.00 0.00 3.86
2951 3783 2.610479 CCGCACACTTCTTCTAGCTTCA 60.610 50.000 0.00 0.00 0.00 3.02
2952 3784 3.257393 CGCACACTTCTTCTAGCTTCAT 58.743 45.455 0.00 0.00 0.00 2.57
2953 3785 3.061831 CGCACACTTCTTCTAGCTTCATG 59.938 47.826 0.00 0.00 0.00 3.07
2954 3786 3.181512 GCACACTTCTTCTAGCTTCATGC 60.182 47.826 0.00 0.00 43.29 4.06
2969 3801 6.761731 GCTTCATGCTACTACTTGTATGAG 57.238 41.667 0.00 0.00 36.83 2.90
2970 3802 5.176590 GCTTCATGCTACTACTTGTATGAGC 59.823 44.000 0.00 6.96 36.83 4.26
2971 3803 5.201713 TCATGCTACTACTTGTATGAGCC 57.798 43.478 9.88 0.00 32.08 4.70
2972 3804 4.649218 TCATGCTACTACTTGTATGAGCCA 59.351 41.667 9.88 0.00 32.08 4.75
2973 3805 5.305386 TCATGCTACTACTTGTATGAGCCAT 59.695 40.000 9.88 0.00 32.08 4.40
2974 3806 4.948847 TGCTACTACTTGTATGAGCCATG 58.051 43.478 9.88 0.00 29.22 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.674263 AGTTTGCAAAAACATCCAATTAATGA 57.326 26.923 14.67 0.00 35.20 2.57
2 3 9.553064 TGTAGTTTGCAAAAACATCCAATTAAT 57.447 25.926 14.67 0.00 35.20 1.40
3 4 8.948631 TGTAGTTTGCAAAAACATCCAATTAA 57.051 26.923 14.67 0.00 35.20 1.40
4 5 8.948631 TTGTAGTTTGCAAAAACATCCAATTA 57.051 26.923 22.35 8.85 35.20 1.40
5 6 7.856145 TTGTAGTTTGCAAAAACATCCAATT 57.144 28.000 22.35 0.00 35.20 2.32
6 7 7.856145 TTTGTAGTTTGCAAAAACATCCAAT 57.144 28.000 22.35 0.00 33.51 3.16
7 8 7.672983 TTTTGTAGTTTGCAAAAACATCCAA 57.327 28.000 22.35 14.46 41.18 3.53
8 9 7.672983 TTTTTGTAGTTTGCAAAAACATCCA 57.327 28.000 22.35 10.48 45.24 3.41
35 36 8.497745 ACCAAGATAGATGATGAGTGGTAAAAT 58.502 33.333 0.00 0.00 36.38 1.82
36 37 7.861629 ACCAAGATAGATGATGAGTGGTAAAA 58.138 34.615 0.00 0.00 36.38 1.52
37 38 7.437713 ACCAAGATAGATGATGAGTGGTAAA 57.562 36.000 0.00 0.00 36.38 2.01
38 39 7.275183 CAACCAAGATAGATGATGAGTGGTAA 58.725 38.462 0.00 0.00 37.14 2.85
39 40 6.183361 CCAACCAAGATAGATGATGAGTGGTA 60.183 42.308 0.00 0.00 37.14 3.25
40 41 5.397221 CCAACCAAGATAGATGATGAGTGGT 60.397 44.000 0.00 0.00 39.79 4.16
41 42 5.061853 CCAACCAAGATAGATGATGAGTGG 58.938 45.833 0.00 0.00 0.00 4.00
42 43 5.526479 CACCAACCAAGATAGATGATGAGTG 59.474 44.000 0.00 0.00 0.00 3.51
43 44 5.426509 TCACCAACCAAGATAGATGATGAGT 59.573 40.000 0.00 0.00 0.00 3.41
44 45 5.922053 TCACCAACCAAGATAGATGATGAG 58.078 41.667 0.00 0.00 0.00 2.90
45 46 5.662657 TCTCACCAACCAAGATAGATGATGA 59.337 40.000 0.00 0.00 0.00 2.92
46 47 5.922053 TCTCACCAACCAAGATAGATGATG 58.078 41.667 0.00 0.00 0.00 3.07
47 48 6.760440 ATCTCACCAACCAAGATAGATGAT 57.240 37.500 0.00 0.00 0.00 2.45
48 49 6.566079 AATCTCACCAACCAAGATAGATGA 57.434 37.500 0.00 0.00 0.00 2.92
49 50 7.636150 AAAATCTCACCAACCAAGATAGATG 57.364 36.000 0.00 0.00 0.00 2.90
50 51 7.890127 TCAAAAATCTCACCAACCAAGATAGAT 59.110 33.333 0.00 0.00 0.00 1.98
51 52 7.230747 TCAAAAATCTCACCAACCAAGATAGA 58.769 34.615 0.00 0.00 0.00 1.98
52 53 7.452880 TCAAAAATCTCACCAACCAAGATAG 57.547 36.000 0.00 0.00 0.00 2.08
53 54 7.831691 TTCAAAAATCTCACCAACCAAGATA 57.168 32.000 0.00 0.00 0.00 1.98
54 55 6.729690 TTCAAAAATCTCACCAACCAAGAT 57.270 33.333 0.00 0.00 0.00 2.40
55 56 6.729690 ATTCAAAAATCTCACCAACCAAGA 57.270 33.333 0.00 0.00 0.00 3.02
56 57 6.985645 TCAATTCAAAAATCTCACCAACCAAG 59.014 34.615 0.00 0.00 0.00 3.61
57 58 6.882656 TCAATTCAAAAATCTCACCAACCAA 58.117 32.000 0.00 0.00 0.00 3.67
58 59 6.098124 ACTCAATTCAAAAATCTCACCAACCA 59.902 34.615 0.00 0.00 0.00 3.67
59 60 6.515832 ACTCAATTCAAAAATCTCACCAACC 58.484 36.000 0.00 0.00 0.00 3.77
60 61 7.428826 AGACTCAATTCAAAAATCTCACCAAC 58.571 34.615 0.00 0.00 0.00 3.77
61 62 7.587037 AGACTCAATTCAAAAATCTCACCAA 57.413 32.000 0.00 0.00 0.00 3.67
62 63 7.587037 AAGACTCAATTCAAAAATCTCACCA 57.413 32.000 0.00 0.00 0.00 4.17
97 98 1.339151 CGGCTCAGCTACTCCCTTTTT 60.339 52.381 0.00 0.00 0.00 1.94
98 99 0.250513 CGGCTCAGCTACTCCCTTTT 59.749 55.000 0.00 0.00 0.00 2.27
99 100 1.901085 CGGCTCAGCTACTCCCTTT 59.099 57.895 0.00 0.00 0.00 3.11
100 101 2.726351 GCGGCTCAGCTACTCCCTT 61.726 63.158 0.00 0.00 0.00 3.95
101 102 3.151022 GCGGCTCAGCTACTCCCT 61.151 66.667 0.00 0.00 0.00 4.20
102 103 4.577246 CGCGGCTCAGCTACTCCC 62.577 72.222 0.00 0.00 34.40 4.30
104 105 4.200283 AGCGCGGCTCAGCTACTC 62.200 66.667 8.83 0.00 42.60 2.59
105 106 4.504916 CAGCGCGGCTCAGCTACT 62.505 66.667 8.83 0.00 42.52 2.57
227 229 2.920912 AAGAGGAACGGCGACCCA 60.921 61.111 16.62 0.00 0.00 4.51
248 250 1.379916 CCCATTGTGACCAGCCTGA 59.620 57.895 0.00 0.00 0.00 3.86
249 251 2.345760 GCCCATTGTGACCAGCCTG 61.346 63.158 0.00 0.00 0.00 4.85
250 252 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
251 253 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
252 254 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
253 255 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
254 256 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
255 257 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
256 258 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
257 259 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
258 260 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
259 261 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
260 262 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
261 263 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
262 264 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
263 265 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
264 266 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
265 267 6.594159 TGAAGTTACTAGCTTATGTTCTTGCC 59.406 38.462 0.00 0.00 0.00 4.52
266 268 7.117812 TGTGAAGTTACTAGCTTATGTTCTTGC 59.882 37.037 0.00 0.00 0.00 4.01
267 269 8.436200 GTGTGAAGTTACTAGCTTATGTTCTTG 58.564 37.037 0.00 0.00 0.00 3.02
268 270 8.368668 AGTGTGAAGTTACTAGCTTATGTTCTT 58.631 33.333 0.00 0.00 0.00 2.52
269 271 7.897864 AGTGTGAAGTTACTAGCTTATGTTCT 58.102 34.615 0.00 0.00 0.00 3.01
270 272 8.535690 AAGTGTGAAGTTACTAGCTTATGTTC 57.464 34.615 0.00 0.00 0.00 3.18
271 273 7.603024 GGAAGTGTGAAGTTACTAGCTTATGTT 59.397 37.037 0.00 0.00 0.00 2.71
272 274 7.097834 GGAAGTGTGAAGTTACTAGCTTATGT 58.902 38.462 0.00 0.00 0.00 2.29
273 275 6.535508 GGGAAGTGTGAAGTTACTAGCTTATG 59.464 42.308 0.00 0.00 0.00 1.90
274 276 6.440965 AGGGAAGTGTGAAGTTACTAGCTTAT 59.559 38.462 0.00 0.00 0.00 1.73
275 277 5.778750 AGGGAAGTGTGAAGTTACTAGCTTA 59.221 40.000 0.00 0.00 0.00 3.09
276 278 4.593634 AGGGAAGTGTGAAGTTACTAGCTT 59.406 41.667 0.00 0.00 0.00 3.74
277 279 4.161102 AGGGAAGTGTGAAGTTACTAGCT 58.839 43.478 0.00 0.00 0.00 3.32
278 280 4.538746 AGGGAAGTGTGAAGTTACTAGC 57.461 45.455 0.00 0.00 0.00 3.42
279 281 6.660094 AGTCTAGGGAAGTGTGAAGTTACTAG 59.340 42.308 0.00 0.00 0.00 2.57
280 282 6.550163 AGTCTAGGGAAGTGTGAAGTTACTA 58.450 40.000 0.00 0.00 0.00 1.82
281 283 5.395611 AGTCTAGGGAAGTGTGAAGTTACT 58.604 41.667 0.00 0.00 0.00 2.24
282 284 5.725325 AGTCTAGGGAAGTGTGAAGTTAC 57.275 43.478 0.00 0.00 0.00 2.50
283 285 6.952358 ACATAGTCTAGGGAAGTGTGAAGTTA 59.048 38.462 0.00 0.00 0.00 2.24
284 286 5.780793 ACATAGTCTAGGGAAGTGTGAAGTT 59.219 40.000 0.00 0.00 0.00 2.66
285 287 5.334421 ACATAGTCTAGGGAAGTGTGAAGT 58.666 41.667 0.00 0.00 0.00 3.01
286 288 5.923733 ACATAGTCTAGGGAAGTGTGAAG 57.076 43.478 0.00 0.00 0.00 3.02
287 289 6.952358 AGTAACATAGTCTAGGGAAGTGTGAA 59.048 38.462 0.00 0.00 0.00 3.18
288 290 6.491383 AGTAACATAGTCTAGGGAAGTGTGA 58.509 40.000 0.00 0.00 0.00 3.58
289 291 6.777213 AGTAACATAGTCTAGGGAAGTGTG 57.223 41.667 0.00 0.00 0.00 3.82
290 292 6.832900 GGTAGTAACATAGTCTAGGGAAGTGT 59.167 42.308 0.00 0.00 0.00 3.55
291 293 7.061688 AGGTAGTAACATAGTCTAGGGAAGTG 58.938 42.308 0.00 0.00 0.00 3.16
292 294 7.223472 AGGTAGTAACATAGTCTAGGGAAGT 57.777 40.000 0.00 0.00 0.00 3.01
293 295 6.716173 GGAGGTAGTAACATAGTCTAGGGAAG 59.284 46.154 0.00 0.00 0.00 3.46
294 296 6.160992 TGGAGGTAGTAACATAGTCTAGGGAA 59.839 42.308 0.00 0.00 0.00 3.97
295 297 5.673574 TGGAGGTAGTAACATAGTCTAGGGA 59.326 44.000 0.00 0.00 0.00 4.20
296 298 5.950023 TGGAGGTAGTAACATAGTCTAGGG 58.050 45.833 0.00 0.00 0.00 3.53
297 299 8.795842 CTATGGAGGTAGTAACATAGTCTAGG 57.204 42.308 0.00 0.00 38.48 3.02
303 305 6.075984 ACCCACTATGGAGGTAGTAACATAG 58.924 44.000 8.52 8.52 45.07 2.23
304 306 6.034442 ACCCACTATGGAGGTAGTAACATA 57.966 41.667 0.00 0.00 40.96 2.29
305 307 4.892198 ACCCACTATGGAGGTAGTAACAT 58.108 43.478 0.00 0.00 40.96 2.71
306 308 4.341863 ACCCACTATGGAGGTAGTAACA 57.658 45.455 0.00 0.00 40.96 2.41
312 314 3.272818 TGTTCCTACCCACTATGGAGGTA 59.727 47.826 0.00 3.53 40.96 3.08
313 315 2.045326 TGTTCCTACCCACTATGGAGGT 59.955 50.000 0.00 1.66 40.96 3.85
314 316 2.759355 TGTTCCTACCCACTATGGAGG 58.241 52.381 0.00 0.00 40.96 4.30
315 317 4.227197 AGATGTTCCTACCCACTATGGAG 58.773 47.826 0.00 0.00 40.96 3.86
316 318 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
317 319 5.544176 ACATAGATGTTCCTACCCACTATGG 59.456 44.000 0.81 0.00 37.90 2.74
318 320 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
319 321 7.451877 CACTACATAGATGTTCCTACCCACTAT 59.548 40.741 0.00 0.00 41.97 2.12
320 322 6.776116 CACTACATAGATGTTCCTACCCACTA 59.224 42.308 0.00 0.00 41.97 2.74
321 323 5.598830 CACTACATAGATGTTCCTACCCACT 59.401 44.000 0.00 0.00 41.97 4.00
322 324 5.363005 ACACTACATAGATGTTCCTACCCAC 59.637 44.000 0.00 0.00 41.97 4.61
323 325 5.525484 ACACTACATAGATGTTCCTACCCA 58.475 41.667 0.00 0.00 41.97 4.51
324 326 5.597182 TGACACTACATAGATGTTCCTACCC 59.403 44.000 0.00 0.00 41.97 3.69
325 327 6.710597 TGACACTACATAGATGTTCCTACC 57.289 41.667 0.00 0.00 41.97 3.18
326 328 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
327 329 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
328 330 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
329 331 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
330 332 6.908870 TTGCATGACACTACATAGATGTTC 57.091 37.500 0.00 0.00 41.97 3.18
331 333 7.049754 TCATTGCATGACACTACATAGATGTT 58.950 34.615 0.00 0.00 36.98 2.71
332 334 6.585416 TCATTGCATGACACTACATAGATGT 58.415 36.000 0.00 0.08 38.37 3.06
333 335 7.172703 ACATCATTGCATGACACTACATAGATG 59.827 37.037 0.00 0.00 43.01 2.90
334 336 7.222161 ACATCATTGCATGACACTACATAGAT 58.778 34.615 0.00 0.00 43.01 1.98
335 337 6.585416 ACATCATTGCATGACACTACATAGA 58.415 36.000 0.00 0.00 43.01 1.98
336 338 6.856135 ACATCATTGCATGACACTACATAG 57.144 37.500 0.00 0.00 43.01 2.23
337 339 8.907222 AATACATCATTGCATGACACTACATA 57.093 30.769 0.00 0.00 43.01 2.29
338 340 7.812690 AATACATCATTGCATGACACTACAT 57.187 32.000 0.00 0.00 43.01 2.29
339 341 7.628769 AAATACATCATTGCATGACACTACA 57.371 32.000 0.00 0.00 43.01 2.74
343 345 9.616634 CCTAATAAATACATCATTGCATGACAC 57.383 33.333 0.00 0.00 43.01 3.67
344 346 9.353431 ACCTAATAAATACATCATTGCATGACA 57.647 29.630 0.00 0.00 43.01 3.58
365 367 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
366 368 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
367 369 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
368 370 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
369 371 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
370 372 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
371 373 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
372 374 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
373 375 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
374 376 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
375 377 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
376 378 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
377 379 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
378 380 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
379 381 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
380 382 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
381 383 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
382 384 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
383 385 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
384 386 3.882888 GGAACATCACACACTCCAAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
385 387 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
386 388 2.547855 CGGAACATCACACACTCCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
387 389 1.800586 CGGAACATCACACACTCCAAG 59.199 52.381 0.00 0.00 0.00 3.61
388 390 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
389 391 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
390 392 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
391 393 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
392 394 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
393 395 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
394 396 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
395 397 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
396 398 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
397 399 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
398 400 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
399 401 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
400 402 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
417 419 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
418 420 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
419 421 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
420 422 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
421 423 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
422 424 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
423 425 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
424 426 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
425 427 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
426 428 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
427 429 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
428 430 7.624549 TGTATTTAATGAAGAGAGAGGTGCTT 58.375 34.615 0.00 0.00 0.00 3.91
429 431 7.187824 TGTATTTAATGAAGAGAGAGGTGCT 57.812 36.000 0.00 0.00 0.00 4.40
430 432 7.519649 GCATGTATTTAATGAAGAGAGAGGTGC 60.520 40.741 0.00 0.00 0.00 5.01
431 433 7.041508 GGCATGTATTTAATGAAGAGAGAGGTG 60.042 40.741 0.00 0.00 0.00 4.00
432 434 6.995091 GGCATGTATTTAATGAAGAGAGAGGT 59.005 38.462 0.00 0.00 0.00 3.85
433 435 6.994496 TGGCATGTATTTAATGAAGAGAGAGG 59.006 38.462 0.00 0.00 0.00 3.69
434 436 7.496920 TGTGGCATGTATTTAATGAAGAGAGAG 59.503 37.037 0.00 0.00 0.00 3.20
435 437 7.337938 TGTGGCATGTATTTAATGAAGAGAGA 58.662 34.615 0.00 0.00 0.00 3.10
436 438 7.558161 TGTGGCATGTATTTAATGAAGAGAG 57.442 36.000 0.00 0.00 0.00 3.20
437 439 9.625747 TTATGTGGCATGTATTTAATGAAGAGA 57.374 29.630 0.00 0.00 0.00 3.10
438 440 9.888878 CTTATGTGGCATGTATTTAATGAAGAG 57.111 33.333 0.00 0.00 0.00 2.85
439 441 8.352201 GCTTATGTGGCATGTATTTAATGAAGA 58.648 33.333 0.00 0.00 0.00 2.87
440 442 8.136800 TGCTTATGTGGCATGTATTTAATGAAG 58.863 33.333 0.00 0.00 34.56 3.02
441 443 8.005192 TGCTTATGTGGCATGTATTTAATGAA 57.995 30.769 0.00 0.00 34.56 2.57
442 444 7.579761 TGCTTATGTGGCATGTATTTAATGA 57.420 32.000 0.00 0.00 34.56 2.57
443 445 8.645730 TTTGCTTATGTGGCATGTATTTAATG 57.354 30.769 0.00 0.00 39.54 1.90
444 446 8.477256 ACTTTGCTTATGTGGCATGTATTTAAT 58.523 29.630 0.00 0.00 39.54 1.40
445 447 7.835822 ACTTTGCTTATGTGGCATGTATTTAA 58.164 30.769 0.00 0.00 39.54 1.52
446 448 7.403312 ACTTTGCTTATGTGGCATGTATTTA 57.597 32.000 0.00 0.00 39.54 1.40
447 449 6.284891 ACTTTGCTTATGTGGCATGTATTT 57.715 33.333 0.00 0.00 39.54 1.40
448 450 5.920193 ACTTTGCTTATGTGGCATGTATT 57.080 34.783 0.00 0.00 39.54 1.89
449 451 5.185635 ACAACTTTGCTTATGTGGCATGTAT 59.814 36.000 0.00 0.00 39.54 2.29
450 452 4.522405 ACAACTTTGCTTATGTGGCATGTA 59.478 37.500 0.00 0.00 39.54 2.29
451 453 3.321682 ACAACTTTGCTTATGTGGCATGT 59.678 39.130 0.00 0.00 39.54 3.21
452 454 3.916761 ACAACTTTGCTTATGTGGCATG 58.083 40.909 0.00 0.00 39.54 4.06
453 455 5.920193 ATACAACTTTGCTTATGTGGCAT 57.080 34.783 0.00 0.00 39.54 4.40
454 456 5.468592 CAATACAACTTTGCTTATGTGGCA 58.531 37.500 0.00 0.00 37.97 4.92
455 457 4.864247 CCAATACAACTTTGCTTATGTGGC 59.136 41.667 0.00 0.00 0.00 5.01
456 458 6.071952 ACTCCAATACAACTTTGCTTATGTGG 60.072 38.462 0.00 0.00 0.00 4.17
457 459 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
458 460 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
459 461 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
460 462 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
461 463 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
462 464 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
463 465 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
464 466 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
465 467 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
466 468 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
467 469 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
468 470 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
469 471 5.689383 AACATCACACACTCCAATACAAC 57.311 39.130 0.00 0.00 0.00 3.32
470 472 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
471 473 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
472 474 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
478 480 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
479 481 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
480 482 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
481 483 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
482 484 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
483 485 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
484 486 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
485 487 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
486 488 4.101274 GGGGAGGAACTTAGGAGTAACATC 59.899 50.000 0.00 0.00 41.55 3.06
487 489 4.038633 GGGGAGGAACTTAGGAGTAACAT 58.961 47.826 0.00 0.00 41.55 2.71
488 490 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
489 491 3.197333 GTGGGGAGGAACTTAGGAGTAAC 59.803 52.174 0.00 0.00 41.55 2.50
490 492 3.078612 AGTGGGGAGGAACTTAGGAGTAA 59.921 47.826 0.00 0.00 41.55 2.24
491 493 2.658489 AGTGGGGAGGAACTTAGGAGTA 59.342 50.000 0.00 0.00 41.55 2.59
492 494 1.437547 AGTGGGGAGGAACTTAGGAGT 59.562 52.381 0.00 0.00 41.55 3.85
493 495 1.834263 CAGTGGGGAGGAACTTAGGAG 59.166 57.143 0.00 0.00 41.55 3.69
494 496 1.151413 ACAGTGGGGAGGAACTTAGGA 59.849 52.381 0.00 0.00 41.55 2.94
495 497 1.279271 CACAGTGGGGAGGAACTTAGG 59.721 57.143 0.00 0.00 41.55 2.69
496 498 2.028020 GTCACAGTGGGGAGGAACTTAG 60.028 54.545 0.00 0.00 41.55 2.18
497 499 1.975680 GTCACAGTGGGGAGGAACTTA 59.024 52.381 0.00 0.00 41.55 2.24
498 500 0.765510 GTCACAGTGGGGAGGAACTT 59.234 55.000 0.00 0.00 41.55 2.66
500 502 1.375326 GGTCACAGTGGGGAGGAAC 59.625 63.158 0.00 0.00 0.00 3.62
501 503 1.074090 TGGTCACAGTGGGGAGGAA 60.074 57.895 0.00 0.00 0.00 3.36
502 504 1.536418 CTGGTCACAGTGGGGAGGA 60.536 63.158 0.00 0.00 39.92 3.71
503 505 3.072476 CTGGTCACAGTGGGGAGG 58.928 66.667 0.00 0.00 39.92 4.30
504 506 2.348998 GCTGGTCACAGTGGGGAG 59.651 66.667 0.00 0.00 46.62 4.30
505 507 3.249189 GGCTGGTCACAGTGGGGA 61.249 66.667 0.00 0.00 46.62 4.81
506 508 3.252284 AGGCTGGTCACAGTGGGG 61.252 66.667 0.00 0.00 46.62 4.96
507 509 2.348998 GAGGCTGGTCACAGTGGG 59.651 66.667 0.00 0.00 46.62 4.61
508 510 1.004080 CTGAGGCTGGTCACAGTGG 60.004 63.158 0.00 0.00 46.62 4.00
509 511 0.107456 AACTGAGGCTGGTCACAGTG 59.893 55.000 6.57 0.00 46.62 3.66
510 512 0.394565 GAACTGAGGCTGGTCACAGT 59.605 55.000 0.00 0.00 46.62 3.55
512 514 1.367471 CGAACTGAGGCTGGTCACA 59.633 57.895 0.00 0.00 0.00 3.58
513 515 1.374758 CCGAACTGAGGCTGGTCAC 60.375 63.158 0.00 0.00 0.00 3.67
514 516 1.407656 AACCGAACTGAGGCTGGTCA 61.408 55.000 0.00 0.00 31.17 4.02
515 517 0.951040 CAACCGAACTGAGGCTGGTC 60.951 60.000 0.00 0.00 31.17 4.02
516 518 1.071471 CAACCGAACTGAGGCTGGT 59.929 57.895 0.00 0.00 33.45 4.00
517 519 1.672356 CCAACCGAACTGAGGCTGG 60.672 63.158 0.00 0.00 38.48 4.85
518 520 0.036010 ATCCAACCGAACTGAGGCTG 60.036 55.000 0.00 0.00 0.00 4.85
519 521 0.250513 GATCCAACCGAACTGAGGCT 59.749 55.000 0.00 0.00 0.00 4.58
520 522 0.744771 GGATCCAACCGAACTGAGGC 60.745 60.000 6.95 0.00 0.00 4.70
521 523 3.460648 GGATCCAACCGAACTGAGG 57.539 57.895 6.95 0.00 0.00 3.86
547 549 2.303022 GACTGAAGGAGGGATTGTGTGA 59.697 50.000 0.00 0.00 0.00 3.58
586 588 1.523758 ATCGGGTTTGTTCACTCAGC 58.476 50.000 0.00 0.00 0.00 4.26
929 985 0.178992 TGGCAGCAGCTAAACCAAGT 60.179 50.000 8.25 0.00 41.70 3.16
1438 1507 3.499737 CGAGCCATTGGACGTGCC 61.500 66.667 6.95 0.43 37.10 5.01
1525 1612 2.594592 GCACGGCTTCTTGGTGGT 60.595 61.111 0.00 0.00 32.42 4.16
1652 1761 7.095229 GCAATGTATAATGGATTCGAGCAGTAA 60.095 37.037 0.00 0.00 0.00 2.24
1665 1774 5.280945 CCAAGGAAACGCAATGTATAATGG 58.719 41.667 0.00 0.00 0.00 3.16
1672 1781 0.178975 TCCCCAAGGAAACGCAATGT 60.179 50.000 0.00 0.00 40.08 2.71
1933 2165 2.218953 GACGATAAGATGGCGTCCAA 57.781 50.000 2.37 0.00 46.15 3.53
2074 2851 1.066071 GTGGGGAGAGTAAACCAGAGC 60.066 57.143 0.00 0.00 32.84 4.09
2090 2867 5.190677 CCCTGTAAAAGGTTACATAGTGGG 58.809 45.833 7.07 7.07 46.57 4.61
2101 2878 3.605879 ACCTAAGTCCCCTGTAAAAGGT 58.394 45.455 0.00 0.00 45.78 3.50
2117 2894 9.184062 CAAGTACGAATATATAACGCAACCTAA 57.816 33.333 10.69 0.00 0.00 2.69
2135 2919 2.101415 CCCTGCATCAGATCAAGTACGA 59.899 50.000 0.00 0.00 32.44 3.43
2155 2939 3.322191 AACCTCTCTCCCTCTACATCC 57.678 52.381 0.00 0.00 0.00 3.51
2246 3035 1.003812 CTCGTTGGGTATTGGGGTTCA 59.996 52.381 0.00 0.00 0.00 3.18
2258 3047 0.041312 CACAAAGAACGCTCGTTGGG 60.041 55.000 16.82 10.38 43.08 4.12
2260 3049 0.041312 CCCACAAAGAACGCTCGTTG 60.041 55.000 12.66 12.06 44.01 4.10
2262 3051 1.597027 CCCCACAAAGAACGCTCGT 60.597 57.895 0.00 0.00 0.00 4.18
2266 3055 1.007387 CAAGCCCCACAAAGAACGC 60.007 57.895 0.00 0.00 0.00 4.84
2268 3057 1.367471 GCCAAGCCCCACAAAGAAC 59.633 57.895 0.00 0.00 0.00 3.01
2272 3061 1.346068 GTTATTGCCAAGCCCCACAAA 59.654 47.619 0.00 0.00 0.00 2.83
2273 3062 0.972883 GTTATTGCCAAGCCCCACAA 59.027 50.000 0.00 0.00 0.00 3.33
2290 3079 1.025812 TGCCATGGAAAACGTTCGTT 58.974 45.000 18.40 4.72 34.28 3.85
2291 3080 1.025812 TTGCCATGGAAAACGTTCGT 58.974 45.000 18.40 0.00 34.28 3.85
2314 3103 1.086696 CGACATTGGGCTTGACGAAT 58.913 50.000 0.00 0.00 34.91 3.34
2399 3222 8.424918 TGAAAACAACCTTTTATAAAGGCATGA 58.575 29.630 21.62 5.71 41.10 3.07
2417 3243 7.662669 GTGGTATTCCCTAAGTACTGAAAACAA 59.337 37.037 0.00 0.00 0.00 2.83
2427 3253 5.163519 GCGTACTTGTGGTATTCCCTAAGTA 60.164 44.000 9.20 9.20 38.69 2.24
2428 3254 4.382362 GCGTACTTGTGGTATTCCCTAAGT 60.382 45.833 10.66 10.66 39.96 2.24
2429 3255 4.117685 GCGTACTTGTGGTATTCCCTAAG 58.882 47.826 0.00 1.70 34.22 2.18
2444 3270 5.599656 TCCTACATGGGTAATTAGCGTACTT 59.400 40.000 8.49 0.00 36.20 2.24
2459 3285 5.959618 TGTAGTCGTCATATCCTACATGG 57.040 43.478 0.00 0.00 35.95 3.66
2916 3748 2.025898 TGTGCGGGTGAGATAACGATA 58.974 47.619 0.00 0.00 0.00 2.92
2917 3749 0.821517 TGTGCGGGTGAGATAACGAT 59.178 50.000 0.00 0.00 0.00 3.73
2918 3750 0.108992 GTGTGCGGGTGAGATAACGA 60.109 55.000 0.00 0.00 0.00 3.85
2919 3751 0.108804 AGTGTGCGGGTGAGATAACG 60.109 55.000 0.00 0.00 0.00 3.18
2920 3752 2.000447 GAAGTGTGCGGGTGAGATAAC 59.000 52.381 0.00 0.00 0.00 1.89
2921 3753 1.899814 AGAAGTGTGCGGGTGAGATAA 59.100 47.619 0.00 0.00 0.00 1.75
2922 3754 1.557099 AGAAGTGTGCGGGTGAGATA 58.443 50.000 0.00 0.00 0.00 1.98
2923 3755 0.687354 AAGAAGTGTGCGGGTGAGAT 59.313 50.000 0.00 0.00 0.00 2.75
2924 3756 0.033504 GAAGAAGTGTGCGGGTGAGA 59.966 55.000 0.00 0.00 0.00 3.27
2925 3757 0.034059 AGAAGAAGTGTGCGGGTGAG 59.966 55.000 0.00 0.00 0.00 3.51
2926 3758 1.272490 CTAGAAGAAGTGTGCGGGTGA 59.728 52.381 0.00 0.00 0.00 4.02
2927 3759 1.714794 CTAGAAGAAGTGTGCGGGTG 58.285 55.000 0.00 0.00 0.00 4.61
2928 3760 0.037232 GCTAGAAGAAGTGTGCGGGT 60.037 55.000 0.00 0.00 0.00 5.28
2929 3761 0.247736 AGCTAGAAGAAGTGTGCGGG 59.752 55.000 0.00 0.00 0.00 6.13
2930 3762 1.996191 GAAGCTAGAAGAAGTGTGCGG 59.004 52.381 0.00 0.00 0.00 5.69
2931 3763 2.677199 TGAAGCTAGAAGAAGTGTGCG 58.323 47.619 0.00 0.00 0.00 5.34
2932 3764 3.181512 GCATGAAGCTAGAAGAAGTGTGC 60.182 47.826 0.00 0.00 41.15 4.57
2933 3765 4.596801 GCATGAAGCTAGAAGAAGTGTG 57.403 45.455 0.00 0.00 41.15 3.82
2946 3778 5.176590 GCTCATACAAGTAGTAGCATGAAGC 59.823 44.000 0.00 0.00 46.19 3.86
2947 3779 5.694006 GGCTCATACAAGTAGTAGCATGAAG 59.306 44.000 14.62 0.00 35.85 3.02
2948 3780 5.128663 TGGCTCATACAAGTAGTAGCATGAA 59.871 40.000 14.62 0.00 35.85 2.57
2949 3781 4.649218 TGGCTCATACAAGTAGTAGCATGA 59.351 41.667 14.62 1.58 35.85 3.07
2950 3782 4.948847 TGGCTCATACAAGTAGTAGCATG 58.051 43.478 14.62 0.00 35.85 4.06
2951 3783 5.545588 CATGGCTCATACAAGTAGTAGCAT 58.454 41.667 14.62 7.04 35.85 3.79
2952 3784 4.948847 CATGGCTCATACAAGTAGTAGCA 58.051 43.478 14.62 5.63 35.85 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.