Multiple sequence alignment - TraesCS6A01G275900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G275900 chr6A 100.000 2843 0 0 1 2843 502545262 502542420 0.000000e+00 5251.0
1 TraesCS6A01G275900 chr6B 95.598 886 31 5 1201 2081 543082069 543081187 0.000000e+00 1413.0
2 TraesCS6A01G275900 chr6B 97.561 451 10 1 627 1077 543082519 543082070 0.000000e+00 771.0
3 TraesCS6A01G275900 chr6B 87.196 453 39 11 2079 2512 678090909 678090457 5.470000e-137 497.0
4 TraesCS6A01G275900 chr6B 88.571 350 17 14 281 614 543082960 543082618 1.230000e-108 403.0
5 TraesCS6A01G275900 chr6B 82.133 375 36 16 2079 2435 642074105 642074466 2.770000e-75 292.0
6 TraesCS6A01G275900 chr5A 93.792 886 47 4 1201 2081 66825530 66826412 0.000000e+00 1325.0
7 TraesCS6A01G275900 chr5A 96.009 451 16 2 627 1077 66825081 66825529 0.000000e+00 732.0
8 TraesCS6A01G275900 chr5A 91.852 135 11 0 136 270 524961063 524961197 3.740000e-44 189.0
9 TraesCS6A01G275900 chr5A 93.023 129 7 2 1077 1205 256167407 256167533 1.340000e-43 187.0
10 TraesCS6A01G275900 chr5A 93.651 126 2 3 493 614 66824864 66824987 1.740000e-42 183.0
11 TraesCS6A01G275900 chr5A 94.318 88 4 1 392 479 66822450 66822536 1.780000e-27 134.0
12 TraesCS6A01G275900 chr5A 85.294 102 2 2 1 89 524960961 524961062 3.020000e-15 93.5
13 TraesCS6A01G275900 chr6D 95.699 744 29 2 1208 1951 361414532 361413792 0.000000e+00 1194.0
14 TraesCS6A01G275900 chr6D 98.004 451 8 1 627 1077 361416189 361415740 0.000000e+00 782.0
15 TraesCS6A01G275900 chr6D 88.840 457 30 4 2077 2512 55115525 55115981 2.490000e-150 542.0
16 TraesCS6A01G275900 chr6D 93.814 291 15 2 2221 2509 400471203 400471492 4.350000e-118 435.0
17 TraesCS6A01G275900 chr6D 90.129 233 6 7 392 614 361416504 361416279 1.290000e-73 287.0
18 TraesCS6A01G275900 chr7D 92.184 435 31 2 2080 2512 55870669 55870236 1.870000e-171 612.0
19 TraesCS6A01G275900 chr7D 89.738 458 23 4 2079 2512 185381002 185381459 5.320000e-157 564.0
20 TraesCS6A01G275900 chr7D 89.716 457 23 6 2080 2512 44653317 44652861 1.910000e-156 562.0
21 TraesCS6A01G275900 chr7D 98.131 321 6 0 2523 2843 590516613 590516293 6.880000e-156 560.0
22 TraesCS6A01G275900 chr7D 97.196 321 9 0 2523 2843 44651937 44651617 6.930000e-151 544.0
23 TraesCS6A01G275900 chr7D 97.196 321 9 0 2523 2843 631179494 631179174 6.930000e-151 544.0
24 TraesCS6A01G275900 chr7D 91.003 289 14 3 2224 2512 631180692 631180416 2.070000e-101 379.0
25 TraesCS6A01G275900 chr5D 97.248 327 9 0 2517 2843 526966885 526967211 3.200000e-154 555.0
26 TraesCS6A01G275900 chr5D 89.183 453 29 3 2080 2512 526965519 526965971 5.350000e-152 547.0
27 TraesCS6A01G275900 chr5D 97.196 321 9 0 2523 2843 385873029 385872709 6.930000e-151 544.0
28 TraesCS6A01G275900 chr5D 96.636 327 11 0 2517 2843 543539794 543540120 6.930000e-151 544.0
29 TraesCS6A01G275900 chr5D 92.437 238 18 0 37 274 334001762 334001525 9.750000e-90 340.0
30 TraesCS6A01G275900 chr4D 97.819 321 7 0 2523 2843 85891200 85891520 3.200000e-154 555.0
31 TraesCS6A01G275900 chr4D 97.508 321 8 0 2523 2843 456037876 456037556 1.490000e-152 549.0
32 TraesCS6A01G275900 chr3D 97.806 319 7 0 2525 2843 38329026 38328708 4.140000e-153 551.0
33 TraesCS6A01G275900 chr3D 88.036 443 37 11 2080 2512 20533465 20533029 7.030000e-141 510.0
34 TraesCS6A01G275900 chr2D 86.184 456 28 8 2079 2512 50939670 50939228 7.180000e-126 460.0
35 TraesCS6A01G275900 chr2D 86.093 453 28 12 2080 2512 605327071 605326634 3.340000e-124 455.0
36 TraesCS6A01G275900 chr5B 83.370 457 42 14 2079 2512 528022297 528021852 2.660000e-105 392.0
37 TraesCS6A01G275900 chr5B 89.922 129 12 1 1077 1205 21593077 21592950 6.300000e-37 165.0
38 TraesCS6A01G275900 chr5B 80.172 116 16 7 1077 1188 348195769 348195881 2.350000e-11 80.5
39 TraesCS6A01G275900 chr3A 91.941 273 8 8 1 273 694944913 694944655 1.240000e-98 370.0
40 TraesCS6A01G275900 chrUn 89.850 266 22 5 37 298 29894273 29894009 1.260000e-88 337.0
41 TraesCS6A01G275900 chrUn 91.228 114 8 2 1076 1188 161607662 161607774 1.360000e-33 154.0
42 TraesCS6A01G275900 chrUn 95.556 45 2 0 1076 1120 161604717 161604761 3.930000e-09 73.1
43 TraesCS6A01G275900 chr7B 83.110 373 35 15 2079 2433 677807874 677808236 5.910000e-82 315.0
44 TraesCS6A01G275900 chr7B 82.086 374 32 12 2080 2435 658478702 658479058 1.290000e-73 287.0
45 TraesCS6A01G275900 chr7B 87.919 149 12 2 97 245 394829022 394828880 1.350000e-38 171.0
46 TraesCS6A01G275900 chr3B 91.743 109 7 2 1076 1183 57245579 57245472 1.760000e-32 150.0
47 TraesCS6A01G275900 chr3B 91.743 109 7 2 1076 1183 57272572 57272465 1.760000e-32 150.0
48 TraesCS6A01G275900 chr3B 88.034 117 12 2 1076 1191 57316040 57315925 1.370000e-28 137.0
49 TraesCS6A01G275900 chr2B 80.000 115 17 6 1080 1191 19425785 19425674 2.350000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G275900 chr6A 502542420 502545262 2842 True 5251.000000 5251 100.000000 1 2843 1 chr6A.!!$R1 2842
1 TraesCS6A01G275900 chr6B 543081187 543082960 1773 True 862.333333 1413 93.910000 281 2081 3 chr6B.!!$R2 1800
2 TraesCS6A01G275900 chr5A 66822450 66826412 3962 False 593.500000 1325 94.442500 392 2081 4 chr5A.!!$F2 1689
3 TraesCS6A01G275900 chr6D 361413792 361416504 2712 True 754.333333 1194 94.610667 392 1951 3 chr6D.!!$R1 1559
4 TraesCS6A01G275900 chr7D 44651617 44653317 1700 True 553.000000 562 93.456000 2080 2843 2 chr7D.!!$R3 763
5 TraesCS6A01G275900 chr7D 631179174 631180692 1518 True 461.500000 544 94.099500 2224 2843 2 chr7D.!!$R4 619
6 TraesCS6A01G275900 chr5D 526965519 526967211 1692 False 551.000000 555 93.215500 2080 2843 2 chr5D.!!$F2 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.032403 TACACACACAGCCCACGTAC 59.968 55.0 0.0 0.0 0.0 3.67 F
272 273 0.106217 CACCAAAACCCCACACTCCT 60.106 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 3600 0.179018 GCCCACTCGCCCATAATTCT 60.179 55.0 0.00 0.0 0.0 2.40 R
2227 5854 0.179051 TCGGCGTTTGTAGGGTTTGT 60.179 50.0 6.85 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.813908 GGACGACCCGTGCATCAC 60.814 66.667 6.15 0.00 46.80 3.06
19 20 2.813908 GACGACCCGTGCATCACC 60.814 66.667 0.00 0.00 41.37 4.02
20 21 3.296709 GACGACCCGTGCATCACCT 62.297 63.158 0.00 0.00 41.37 4.00
21 22 2.509336 CGACCCGTGCATCACCTC 60.509 66.667 0.00 0.00 0.00 3.85
22 23 2.125106 GACCCGTGCATCACCTCC 60.125 66.667 0.00 0.00 0.00 4.30
23 24 2.927856 ACCCGTGCATCACCTCCA 60.928 61.111 0.00 0.00 0.00 3.86
24 25 2.350895 CCCGTGCATCACCTCCAA 59.649 61.111 0.00 0.00 0.00 3.53
25 26 1.746615 CCCGTGCATCACCTCCAAG 60.747 63.158 0.00 0.00 0.00 3.61
26 27 1.003355 CCGTGCATCACCTCCAAGT 60.003 57.895 0.00 0.00 0.00 3.16
27 28 0.249120 CCGTGCATCACCTCCAAGTA 59.751 55.000 0.00 0.00 0.00 2.24
28 29 1.338674 CCGTGCATCACCTCCAAGTAA 60.339 52.381 0.00 0.00 0.00 2.24
29 30 2.422597 CGTGCATCACCTCCAAGTAAA 58.577 47.619 0.00 0.00 0.00 2.01
30 31 3.009723 CGTGCATCACCTCCAAGTAAAT 58.990 45.455 0.00 0.00 0.00 1.40
31 32 3.181507 CGTGCATCACCTCCAAGTAAATG 60.182 47.826 0.00 0.00 0.00 2.32
32 33 3.758554 GTGCATCACCTCCAAGTAAATGT 59.241 43.478 0.00 0.00 0.00 2.71
33 34 4.941263 GTGCATCACCTCCAAGTAAATGTA 59.059 41.667 0.00 0.00 0.00 2.29
34 35 5.414454 GTGCATCACCTCCAAGTAAATGTAA 59.586 40.000 0.00 0.00 0.00 2.41
35 36 5.414454 TGCATCACCTCCAAGTAAATGTAAC 59.586 40.000 0.00 0.00 0.00 2.50
36 37 5.447279 GCATCACCTCCAAGTAAATGTAACG 60.447 44.000 0.00 0.00 0.00 3.18
37 38 4.571919 TCACCTCCAAGTAAATGTAACGG 58.428 43.478 0.00 0.00 0.00 4.44
38 39 3.687698 CACCTCCAAGTAAATGTAACGGG 59.312 47.826 0.00 0.00 0.00 5.28
39 40 2.681344 CCTCCAAGTAAATGTAACGGGC 59.319 50.000 0.00 0.00 0.00 6.13
40 41 2.681344 CTCCAAGTAAATGTAACGGGCC 59.319 50.000 0.00 0.00 0.00 5.80
41 42 2.040012 TCCAAGTAAATGTAACGGGCCA 59.960 45.455 4.39 0.00 0.00 5.36
42 43 3.020984 CCAAGTAAATGTAACGGGCCAT 58.979 45.455 4.39 0.00 0.00 4.40
43 44 3.066203 CCAAGTAAATGTAACGGGCCATC 59.934 47.826 4.39 0.00 0.00 3.51
44 45 2.927028 AGTAAATGTAACGGGCCATCC 58.073 47.619 4.39 0.00 0.00 3.51
45 46 2.240160 AGTAAATGTAACGGGCCATCCA 59.760 45.455 4.39 0.00 34.36 3.41
46 47 2.452600 AAATGTAACGGGCCATCCAT 57.547 45.000 4.39 0.00 34.36 3.41
47 48 3.586470 AAATGTAACGGGCCATCCATA 57.414 42.857 4.39 0.00 34.36 2.74
48 49 2.859165 ATGTAACGGGCCATCCATAG 57.141 50.000 4.39 0.00 34.36 2.23
49 50 0.107831 TGTAACGGGCCATCCATAGC 59.892 55.000 4.39 0.00 34.36 2.97
50 51 0.107831 GTAACGGGCCATCCATAGCA 59.892 55.000 4.39 0.00 34.36 3.49
51 52 1.064003 TAACGGGCCATCCATAGCAT 58.936 50.000 4.39 0.00 34.36 3.79
52 53 0.185901 AACGGGCCATCCATAGCATT 59.814 50.000 4.39 0.00 34.36 3.56
53 54 0.185901 ACGGGCCATCCATAGCATTT 59.814 50.000 4.39 0.00 34.36 2.32
54 55 1.423541 ACGGGCCATCCATAGCATTTA 59.576 47.619 4.39 0.00 34.36 1.40
55 56 2.158534 ACGGGCCATCCATAGCATTTAA 60.159 45.455 4.39 0.00 34.36 1.52
56 57 3.091545 CGGGCCATCCATAGCATTTAAT 58.908 45.455 4.39 0.00 34.36 1.40
57 58 3.119388 CGGGCCATCCATAGCATTTAATG 60.119 47.826 4.39 0.00 34.36 1.90
58 59 4.088634 GGGCCATCCATAGCATTTAATGA 58.911 43.478 9.36 0.00 35.00 2.57
59 60 4.082026 GGGCCATCCATAGCATTTAATGAC 60.082 45.833 9.36 0.45 35.00 3.06
60 61 4.523943 GGCCATCCATAGCATTTAATGACA 59.476 41.667 9.36 0.00 0.00 3.58
61 62 5.464168 GCCATCCATAGCATTTAATGACAC 58.536 41.667 9.36 0.00 0.00 3.67
62 63 5.009911 GCCATCCATAGCATTTAATGACACA 59.990 40.000 9.36 0.00 0.00 3.72
63 64 6.441274 CCATCCATAGCATTTAATGACACAC 58.559 40.000 9.36 0.00 0.00 3.82
64 65 6.441274 CATCCATAGCATTTAATGACACACC 58.559 40.000 9.36 0.00 0.00 4.16
65 66 5.504853 TCCATAGCATTTAATGACACACCA 58.495 37.500 9.36 0.00 0.00 4.17
66 67 5.589855 TCCATAGCATTTAATGACACACCAG 59.410 40.000 9.36 0.00 0.00 4.00
67 68 5.221106 CCATAGCATTTAATGACACACCAGG 60.221 44.000 9.36 0.00 0.00 4.45
68 69 3.766545 AGCATTTAATGACACACCAGGT 58.233 40.909 9.36 0.00 0.00 4.00
69 70 3.758554 AGCATTTAATGACACACCAGGTC 59.241 43.478 9.36 0.00 35.83 3.85
70 71 3.426159 GCATTTAATGACACACCAGGTCG 60.426 47.826 9.36 0.00 38.10 4.79
71 72 2.465860 TTAATGACACACCAGGTCGG 57.534 50.000 0.00 0.00 38.10 4.79
72 73 0.036765 TAATGACACACCAGGTCGGC 60.037 55.000 0.00 0.00 39.03 5.54
73 74 2.748058 AATGACACACCAGGTCGGCC 62.748 60.000 0.00 0.00 39.03 6.13
74 75 4.699522 GACACACCAGGTCGGCCC 62.700 72.222 0.08 0.00 39.03 5.80
76 77 3.000819 CACACCAGGTCGGCCCTA 61.001 66.667 0.08 0.00 43.86 3.53
77 78 2.683933 ACACCAGGTCGGCCCTAG 60.684 66.667 0.08 0.00 43.86 3.02
78 79 4.162690 CACCAGGTCGGCCCTAGC 62.163 72.222 0.08 0.00 43.86 3.42
79 80 4.715130 ACCAGGTCGGCCCTAGCA 62.715 66.667 0.08 0.00 43.86 3.49
80 81 4.162690 CCAGGTCGGCCCTAGCAC 62.163 72.222 0.08 0.00 43.86 4.40
81 82 4.162690 CAGGTCGGCCCTAGCACC 62.163 72.222 0.08 0.00 43.86 5.01
82 83 4.715130 AGGTCGGCCCTAGCACCA 62.715 66.667 0.08 0.00 43.87 4.17
83 84 4.468689 GGTCGGCCCTAGCACCAC 62.469 72.222 0.00 0.00 42.56 4.16
84 85 3.702048 GTCGGCCCTAGCACCACA 61.702 66.667 0.00 0.00 42.56 4.17
85 86 3.702048 TCGGCCCTAGCACCACAC 61.702 66.667 0.00 0.00 42.56 3.82
87 88 4.016706 GGCCCTAGCACCACACGT 62.017 66.667 0.00 0.00 42.56 4.49
88 89 2.742372 GCCCTAGCACCACACGTG 60.742 66.667 15.48 15.48 46.03 4.49
89 90 3.056458 CCCTAGCACCACACGTGA 58.944 61.111 25.01 0.00 46.20 4.35
90 91 1.369692 CCCTAGCACCACACGTGAA 59.630 57.895 25.01 0.00 46.20 3.18
91 92 0.250124 CCCTAGCACCACACGTGAAA 60.250 55.000 25.01 0.00 46.20 2.69
92 93 1.588674 CCTAGCACCACACGTGAAAA 58.411 50.000 25.01 0.00 46.20 2.29
93 94 1.944024 CCTAGCACCACACGTGAAAAA 59.056 47.619 25.01 0.00 46.20 1.94
94 95 2.552315 CCTAGCACCACACGTGAAAAAT 59.448 45.455 25.01 5.88 46.20 1.82
95 96 3.004315 CCTAGCACCACACGTGAAAAATT 59.996 43.478 25.01 6.08 46.20 1.82
96 97 3.078594 AGCACCACACGTGAAAAATTC 57.921 42.857 25.01 4.82 46.20 2.17
97 98 1.778591 GCACCACACGTGAAAAATTCG 59.221 47.619 25.01 3.05 46.20 3.34
98 99 2.380660 CACCACACGTGAAAAATTCGG 58.619 47.619 25.01 10.85 46.20 4.30
99 100 2.018515 ACCACACGTGAAAAATTCGGT 58.981 42.857 25.01 11.46 0.00 4.69
100 101 2.424246 ACCACACGTGAAAAATTCGGTT 59.576 40.909 25.01 0.00 0.00 4.44
101 102 3.626670 ACCACACGTGAAAAATTCGGTTA 59.373 39.130 25.01 0.00 0.00 2.85
102 103 3.969981 CCACACGTGAAAAATTCGGTTAC 59.030 43.478 25.01 0.00 0.00 2.50
103 104 4.496010 CCACACGTGAAAAATTCGGTTACA 60.496 41.667 25.01 0.00 0.00 2.41
104 105 4.435231 CACACGTGAAAAATTCGGTTACAC 59.565 41.667 25.01 0.00 0.00 2.90
105 106 4.094590 ACACGTGAAAAATTCGGTTACACA 59.905 37.500 25.01 0.00 0.00 3.72
106 107 4.435231 CACGTGAAAAATTCGGTTACACAC 59.565 41.667 10.90 0.00 0.00 3.82
107 108 4.094590 ACGTGAAAAATTCGGTTACACACA 59.905 37.500 0.00 0.00 0.00 3.72
108 109 4.435231 CGTGAAAAATTCGGTTACACACAC 59.565 41.667 0.00 0.00 0.00 3.82
109 110 5.333513 GTGAAAAATTCGGTTACACACACA 58.666 37.500 0.00 0.00 0.00 3.72
110 111 5.454232 GTGAAAAATTCGGTTACACACACAG 59.546 40.000 0.00 0.00 0.00 3.66
111 112 3.619233 AAATTCGGTTACACACACAGC 57.381 42.857 0.00 0.00 0.00 4.40
112 113 1.519408 ATTCGGTTACACACACAGCC 58.481 50.000 0.00 0.00 0.00 4.85
113 114 0.533308 TTCGGTTACACACACAGCCC 60.533 55.000 0.00 0.00 0.00 5.19
114 115 1.227704 CGGTTACACACACAGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
115 116 1.503818 CGGTTACACACACAGCCCAC 61.504 60.000 0.00 0.00 0.00 4.61
116 117 1.503818 GGTTACACACACAGCCCACG 61.504 60.000 0.00 0.00 0.00 4.94
117 118 0.812412 GTTACACACACAGCCCACGT 60.812 55.000 0.00 0.00 0.00 4.49
118 119 0.751452 TTACACACACAGCCCACGTA 59.249 50.000 0.00 0.00 0.00 3.57
119 120 0.032403 TACACACACAGCCCACGTAC 59.968 55.000 0.00 0.00 0.00 3.67
120 121 1.227409 CACACACAGCCCACGTACA 60.227 57.895 0.00 0.00 0.00 2.90
121 122 0.812014 CACACACAGCCCACGTACAA 60.812 55.000 0.00 0.00 0.00 2.41
122 123 0.107831 ACACACAGCCCACGTACAAT 59.892 50.000 0.00 0.00 0.00 2.71
123 124 0.516877 CACACAGCCCACGTACAATG 59.483 55.000 0.00 0.00 0.00 2.82
124 125 1.234615 ACACAGCCCACGTACAATGC 61.235 55.000 0.00 0.00 0.00 3.56
125 126 0.955428 CACAGCCCACGTACAATGCT 60.955 55.000 0.00 0.00 0.00 3.79
126 127 0.611200 ACAGCCCACGTACAATGCTA 59.389 50.000 0.00 0.00 0.00 3.49
127 128 1.290203 CAGCCCACGTACAATGCTAG 58.710 55.000 0.00 0.00 0.00 3.42
128 129 0.462047 AGCCCACGTACAATGCTAGC 60.462 55.000 8.10 8.10 0.00 3.42
129 130 0.742990 GCCCACGTACAATGCTAGCA 60.743 55.000 21.85 21.85 0.00 3.49
130 131 1.006832 CCCACGTACAATGCTAGCAC 58.993 55.000 22.07 5.82 0.00 4.40
131 132 1.674519 CCCACGTACAATGCTAGCACA 60.675 52.381 22.07 2.53 0.00 4.57
132 133 1.660607 CCACGTACAATGCTAGCACAG 59.339 52.381 22.07 17.71 0.00 3.66
141 142 2.889503 CTAGCACAGCAGCGAGGC 60.890 66.667 0.00 0.00 40.15 4.70
142 143 4.457496 TAGCACAGCAGCGAGGCC 62.457 66.667 0.00 0.00 40.15 5.19
150 151 3.536917 CAGCGAGGCCCCGATGTA 61.537 66.667 17.55 0.00 40.58 2.29
151 152 2.524394 AGCGAGGCCCCGATGTAT 60.524 61.111 12.36 0.00 0.00 2.29
152 153 2.140792 AGCGAGGCCCCGATGTATT 61.141 57.895 12.36 0.00 0.00 1.89
153 154 1.227853 GCGAGGCCCCGATGTATTT 60.228 57.895 12.36 0.00 0.00 1.40
154 155 0.818040 GCGAGGCCCCGATGTATTTT 60.818 55.000 12.36 0.00 0.00 1.82
155 156 0.944386 CGAGGCCCCGATGTATTTTG 59.056 55.000 0.00 0.00 0.00 2.44
156 157 1.474320 CGAGGCCCCGATGTATTTTGA 60.474 52.381 0.00 0.00 0.00 2.69
157 158 1.947456 GAGGCCCCGATGTATTTTGAC 59.053 52.381 0.00 0.00 0.00 3.18
158 159 1.564348 AGGCCCCGATGTATTTTGACT 59.436 47.619 0.00 0.00 0.00 3.41
159 160 2.025321 AGGCCCCGATGTATTTTGACTT 60.025 45.455 0.00 0.00 0.00 3.01
160 161 2.758423 GGCCCCGATGTATTTTGACTTT 59.242 45.455 0.00 0.00 0.00 2.66
161 162 3.949113 GGCCCCGATGTATTTTGACTTTA 59.051 43.478 0.00 0.00 0.00 1.85
162 163 4.036380 GGCCCCGATGTATTTTGACTTTAG 59.964 45.833 0.00 0.00 0.00 1.85
163 164 4.497507 GCCCCGATGTATTTTGACTTTAGC 60.498 45.833 0.00 0.00 0.00 3.09
164 165 4.638421 CCCCGATGTATTTTGACTTTAGCA 59.362 41.667 0.00 0.00 0.00 3.49
165 166 5.124776 CCCCGATGTATTTTGACTTTAGCAA 59.875 40.000 0.00 0.00 0.00 3.91
166 167 6.183360 CCCCGATGTATTTTGACTTTAGCAAT 60.183 38.462 0.00 0.00 0.00 3.56
167 168 6.912591 CCCGATGTATTTTGACTTTAGCAATC 59.087 38.462 0.00 0.00 0.00 2.67
168 169 6.912591 CCGATGTATTTTGACTTTAGCAATCC 59.087 38.462 0.00 0.00 0.00 3.01
169 170 6.912591 CGATGTATTTTGACTTTAGCAATCCC 59.087 38.462 0.00 0.00 0.00 3.85
170 171 6.524101 TGTATTTTGACTTTAGCAATCCCC 57.476 37.500 0.00 0.00 0.00 4.81
171 172 4.718940 ATTTTGACTTTAGCAATCCCCG 57.281 40.909 0.00 0.00 0.00 5.73
172 173 2.871096 TTGACTTTAGCAATCCCCGT 57.129 45.000 0.00 0.00 0.00 5.28
173 174 3.985019 TTGACTTTAGCAATCCCCGTA 57.015 42.857 0.00 0.00 0.00 4.02
174 175 4.497291 TTGACTTTAGCAATCCCCGTAT 57.503 40.909 0.00 0.00 0.00 3.06
175 176 5.617528 TTGACTTTAGCAATCCCCGTATA 57.382 39.130 0.00 0.00 0.00 1.47
176 177 5.209818 TGACTTTAGCAATCCCCGTATAG 57.790 43.478 0.00 0.00 0.00 1.31
177 178 3.995048 GACTTTAGCAATCCCCGTATAGC 59.005 47.826 0.00 0.00 0.00 2.97
178 179 3.646637 ACTTTAGCAATCCCCGTATAGCT 59.353 43.478 0.00 0.00 36.20 3.32
179 180 4.836736 ACTTTAGCAATCCCCGTATAGCTA 59.163 41.667 0.00 0.00 33.83 3.32
180 181 4.796038 TTAGCAATCCCCGTATAGCTAC 57.204 45.455 0.00 0.00 34.65 3.58
184 185 1.542492 ATCCCCGTATAGCTACGTGG 58.458 55.000 4.34 4.34 46.48 4.94
190 191 2.378806 CGTATAGCTACGTGGAAACGG 58.621 52.381 1.81 0.00 44.49 4.44
191 192 2.735823 GTATAGCTACGTGGAAACGGG 58.264 52.381 1.81 0.00 37.45 5.28
192 193 0.179092 ATAGCTACGTGGAAACGGGC 60.179 55.000 1.81 6.77 37.45 6.13
193 194 1.534336 TAGCTACGTGGAAACGGGCA 61.534 55.000 1.81 4.83 37.99 5.36
194 195 2.674084 GCTACGTGGAAACGGGCAC 61.674 63.158 1.81 0.00 36.54 5.01
198 199 4.322385 GTGGAAACGGGCACGCAC 62.322 66.667 9.12 4.29 46.04 5.34
199 200 4.858680 TGGAAACGGGCACGCACA 62.859 61.111 9.12 0.00 46.04 4.57
200 201 4.322385 GGAAACGGGCACGCACAC 62.322 66.667 9.12 0.00 46.04 3.82
201 202 3.578272 GAAACGGGCACGCACACA 61.578 61.111 9.12 0.00 46.04 3.72
202 203 2.903547 GAAACGGGCACGCACACAT 61.904 57.895 9.12 0.00 46.04 3.21
203 204 2.780149 GAAACGGGCACGCACACATC 62.780 60.000 9.12 0.00 46.04 3.06
212 213 4.489795 GCACACATCGCGACGCTG 62.490 66.667 12.93 9.16 0.00 5.18
213 214 4.489795 CACACATCGCGACGCTGC 62.490 66.667 12.93 0.00 0.00 5.25
215 216 3.557479 CACATCGCGACGCTGCAT 61.557 61.111 12.93 4.11 34.15 3.96
216 217 2.815211 ACATCGCGACGCTGCATT 60.815 55.556 12.93 0.00 34.15 3.56
217 218 2.350425 CATCGCGACGCTGCATTG 60.350 61.111 12.93 0.00 34.15 2.82
218 219 4.228097 ATCGCGACGCTGCATTGC 62.228 61.111 12.93 0.46 34.15 3.56
241 242 4.838152 GCGAGATTCCGGCCTGCA 62.838 66.667 0.00 0.00 0.00 4.41
242 243 2.892425 CGAGATTCCGGCCTGCAC 60.892 66.667 0.00 0.00 0.00 4.57
243 244 2.892425 GAGATTCCGGCCTGCACG 60.892 66.667 0.00 0.00 0.00 5.34
262 263 1.652563 GTGCTCCGTCACCAAAACC 59.347 57.895 0.00 0.00 0.00 3.27
263 264 1.527380 TGCTCCGTCACCAAAACCC 60.527 57.895 0.00 0.00 0.00 4.11
264 265 2.265904 GCTCCGTCACCAAAACCCC 61.266 63.158 0.00 0.00 0.00 4.95
265 266 1.149627 CTCCGTCACCAAAACCCCA 59.850 57.895 0.00 0.00 0.00 4.96
266 267 1.152922 TCCGTCACCAAAACCCCAC 60.153 57.895 0.00 0.00 0.00 4.61
267 268 1.454111 CCGTCACCAAAACCCCACA 60.454 57.895 0.00 0.00 0.00 4.17
268 269 1.730451 CCGTCACCAAAACCCCACAC 61.730 60.000 0.00 0.00 0.00 3.82
269 270 0.750182 CGTCACCAAAACCCCACACT 60.750 55.000 0.00 0.00 0.00 3.55
270 271 1.029681 GTCACCAAAACCCCACACTC 58.970 55.000 0.00 0.00 0.00 3.51
271 272 0.106419 TCACCAAAACCCCACACTCC 60.106 55.000 0.00 0.00 0.00 3.85
272 273 0.106217 CACCAAAACCCCACACTCCT 60.106 55.000 0.00 0.00 0.00 3.69
273 274 1.144093 CACCAAAACCCCACACTCCTA 59.856 52.381 0.00 0.00 0.00 2.94
274 275 2.070573 ACCAAAACCCCACACTCCTAT 58.929 47.619 0.00 0.00 0.00 2.57
275 276 2.041216 ACCAAAACCCCACACTCCTATC 59.959 50.000 0.00 0.00 0.00 2.08
276 277 2.308866 CCAAAACCCCACACTCCTATCT 59.691 50.000 0.00 0.00 0.00 1.98
277 278 3.521937 CCAAAACCCCACACTCCTATCTA 59.478 47.826 0.00 0.00 0.00 1.98
278 279 4.384208 CCAAAACCCCACACTCCTATCTAG 60.384 50.000 0.00 0.00 0.00 2.43
279 280 2.777459 ACCCCACACTCCTATCTAGG 57.223 55.000 0.00 0.00 45.02 3.02
329 330 1.045407 ACTGCTTACCTTGACGTCCA 58.955 50.000 14.12 0.00 0.00 4.02
331 332 2.002586 CTGCTTACCTTGACGTCCATG 58.997 52.381 14.12 1.28 0.00 3.66
351 352 0.956410 CTCTCCTCGTCACCTCGTGT 60.956 60.000 0.00 0.00 34.79 4.49
383 384 5.358442 TCTGCTTCTACTACTCTAGGCTTTG 59.642 44.000 0.00 0.00 0.00 2.77
444 445 8.692615 GCTTTATATAAGCTCGAACTTAGTCAC 58.307 37.037 13.31 0.00 40.01 3.67
473 476 9.166126 CTTGTGTATAGAAAAAGGAAAACGAAC 57.834 33.333 0.00 0.00 0.00 3.95
490 503 3.942748 ACGAACCGTGGCATTGTAATTAT 59.057 39.130 0.00 0.00 39.18 1.28
491 504 5.117584 ACGAACCGTGGCATTGTAATTATA 58.882 37.500 0.00 0.00 39.18 0.98
495 2809 7.322699 CGAACCGTGGCATTGTAATTATAAATC 59.677 37.037 0.00 0.00 0.00 2.17
496 2810 6.664515 ACCGTGGCATTGTAATTATAAATCG 58.335 36.000 0.00 1.33 0.00 3.34
497 2811 6.083630 CCGTGGCATTGTAATTATAAATCGG 58.916 40.000 0.00 5.78 0.00 4.18
498 2812 6.293735 CCGTGGCATTGTAATTATAAATCGGT 60.294 38.462 0.00 0.00 0.00 4.69
499 2813 6.577055 CGTGGCATTGTAATTATAAATCGGTG 59.423 38.462 0.00 0.00 0.00 4.94
500 2814 7.519168 CGTGGCATTGTAATTATAAATCGGTGA 60.519 37.037 0.00 0.00 0.00 4.02
501 2815 7.589954 GTGGCATTGTAATTATAAATCGGTGAC 59.410 37.037 0.00 0.00 0.00 3.67
579 2898 3.180584 GCTCATAAGTTACGCACGAGATG 59.819 47.826 0.00 0.00 0.00 2.90
614 2933 4.072088 GGGTTGCTCGCGACGTTG 62.072 66.667 3.71 0.00 0.00 4.10
615 2934 3.033764 GGTTGCTCGCGACGTTGA 61.034 61.111 3.71 0.00 0.00 3.18
616 2935 2.591311 GGTTGCTCGCGACGTTGAA 61.591 57.895 3.71 0.00 0.00 2.69
617 2936 1.274476 GTTGCTCGCGACGTTGAAA 59.726 52.632 3.71 0.00 0.00 2.69
618 2937 0.315544 GTTGCTCGCGACGTTGAAAA 60.316 50.000 3.71 0.00 0.00 2.29
619 2938 0.374063 TTGCTCGCGACGTTGAAAAA 59.626 45.000 3.71 0.00 0.00 1.94
817 3222 1.530013 AACGTGCGGTACTACAGCCT 61.530 55.000 8.61 0.00 38.55 4.58
920 3325 3.132111 TGACGCTATGCATGAAGAACCTA 59.868 43.478 10.16 0.00 0.00 3.08
933 3338 0.173708 GAACCTAGTCCTCACGGCAG 59.826 60.000 0.00 0.00 0.00 4.85
1031 3436 1.990563 CGTAGGATGTTTGGTGTCGAC 59.009 52.381 9.11 9.11 0.00 4.20
1035 3440 1.069227 GGATGTTTGGTGTCGACAAGC 60.069 52.381 21.95 14.30 0.00 4.01
1077 3482 1.526464 GCCCGTTGCATCAAAAACAAG 59.474 47.619 0.00 0.00 40.77 3.16
1078 3483 2.134346 CCCGTTGCATCAAAAACAAGG 58.866 47.619 0.00 0.00 0.00 3.61
1079 3484 2.134346 CCGTTGCATCAAAAACAAGGG 58.866 47.619 0.00 0.00 41.35 3.95
1080 3485 1.526464 CGTTGCATCAAAAACAAGGGC 59.474 47.619 0.00 0.00 0.00 5.19
1081 3486 2.559440 GTTGCATCAAAAACAAGGGCA 58.441 42.857 0.00 0.00 0.00 5.36
1082 3487 2.941720 GTTGCATCAAAAACAAGGGCAA 59.058 40.909 0.00 0.00 37.43 4.52
1083 3488 3.488778 TGCATCAAAAACAAGGGCAAT 57.511 38.095 0.00 0.00 0.00 3.56
1084 3489 3.139850 TGCATCAAAAACAAGGGCAATG 58.860 40.909 0.00 0.00 0.00 2.82
1085 3490 2.095617 GCATCAAAAACAAGGGCAATGC 60.096 45.455 0.00 0.00 0.00 3.56
1086 3491 3.404899 CATCAAAAACAAGGGCAATGCT 58.595 40.909 4.82 0.00 0.00 3.79
1087 3492 4.567971 CATCAAAAACAAGGGCAATGCTA 58.432 39.130 4.82 0.00 0.00 3.49
1088 3493 3.988819 TCAAAAACAAGGGCAATGCTAC 58.011 40.909 4.82 0.00 0.00 3.58
1089 3494 3.386078 TCAAAAACAAGGGCAATGCTACA 59.614 39.130 4.82 0.00 0.00 2.74
1090 3495 3.385193 AAAACAAGGGCAATGCTACAC 57.615 42.857 4.82 0.00 0.00 2.90
1091 3496 2.292828 AACAAGGGCAATGCTACACT 57.707 45.000 4.82 0.00 0.00 3.55
1092 3497 2.292828 ACAAGGGCAATGCTACACTT 57.707 45.000 4.82 2.37 0.00 3.16
1093 3498 3.433306 ACAAGGGCAATGCTACACTTA 57.567 42.857 4.82 0.00 0.00 2.24
1094 3499 3.081804 ACAAGGGCAATGCTACACTTAC 58.918 45.455 4.82 0.00 0.00 2.34
1095 3500 2.024176 AGGGCAATGCTACACTTACG 57.976 50.000 4.82 0.00 0.00 3.18
1096 3501 1.278127 AGGGCAATGCTACACTTACGT 59.722 47.619 4.82 0.00 0.00 3.57
1097 3502 2.498481 AGGGCAATGCTACACTTACGTA 59.502 45.455 4.82 0.00 0.00 3.57
1098 3503 3.055675 AGGGCAATGCTACACTTACGTAA 60.056 43.478 7.94 7.94 0.00 3.18
1099 3504 3.685756 GGGCAATGCTACACTTACGTAAA 59.314 43.478 9.68 0.00 0.00 2.01
1100 3505 4.201783 GGGCAATGCTACACTTACGTAAAG 60.202 45.833 9.68 7.59 41.33 1.85
1101 3506 4.628333 GGCAATGCTACACTTACGTAAAGA 59.372 41.667 9.68 0.00 38.67 2.52
1102 3507 5.293569 GGCAATGCTACACTTACGTAAAGAT 59.706 40.000 9.68 0.13 38.67 2.40
1103 3508 6.183360 GGCAATGCTACACTTACGTAAAGATT 60.183 38.462 9.68 3.83 38.67 2.40
1104 3509 6.682863 GCAATGCTACACTTACGTAAAGATTG 59.317 38.462 9.68 13.99 38.67 2.67
1105 3510 7.623506 GCAATGCTACACTTACGTAAAGATTGT 60.624 37.037 9.68 11.83 38.67 2.71
1106 3511 7.900782 ATGCTACACTTACGTAAAGATTGTT 57.099 32.000 9.68 0.00 38.67 2.83
1107 3512 8.991243 ATGCTACACTTACGTAAAGATTGTTA 57.009 30.769 9.68 2.51 38.67 2.41
1108 3513 8.456904 TGCTACACTTACGTAAAGATTGTTAG 57.543 34.615 9.68 8.64 38.67 2.34
1109 3514 7.543172 TGCTACACTTACGTAAAGATTGTTAGG 59.457 37.037 9.68 0.00 38.67 2.69
1110 3515 7.543520 GCTACACTTACGTAAAGATTGTTAGGT 59.456 37.037 9.68 0.00 38.67 3.08
1112 3517 8.748380 ACACTTACGTAAAGATTGTTAGGTAC 57.252 34.615 9.68 0.00 38.67 3.34
1113 3518 7.814587 ACACTTACGTAAAGATTGTTAGGTACC 59.185 37.037 9.68 2.73 38.67 3.34
1114 3519 8.031277 CACTTACGTAAAGATTGTTAGGTACCT 58.969 37.037 20.57 20.57 38.67 3.08
1115 3520 8.588472 ACTTACGTAAAGATTGTTAGGTACCTT 58.412 33.333 22.11 0.00 38.67 3.50
1117 3522 9.855021 TTACGTAAAGATTGTTAGGTACCTTAC 57.145 33.333 22.11 21.82 35.28 2.34
1118 3523 7.029563 ACGTAAAGATTGTTAGGTACCTTACG 58.970 38.462 24.79 24.79 31.96 3.18
1119 3524 7.029563 CGTAAAGATTGTTAGGTACCTTACGT 58.970 38.462 22.11 13.72 0.00 3.57
1120 3525 8.181573 CGTAAAGATTGTTAGGTACCTTACGTA 58.818 37.037 22.11 13.41 0.00 3.57
1121 3526 9.855021 GTAAAGATTGTTAGGTACCTTACGTAA 57.145 33.333 22.11 12.64 36.87 3.18
1125 3530 8.854117 AGATTGTTAGGTACCTTACGTAATAGG 58.146 37.037 22.11 10.10 40.02 2.57
1126 3531 6.391227 TGTTAGGTACCTTACGTAATAGGC 57.609 41.667 22.11 0.00 40.02 3.93
1127 3532 5.890985 TGTTAGGTACCTTACGTAATAGGCA 59.109 40.000 22.11 0.00 40.02 4.75
1128 3533 6.379703 TGTTAGGTACCTTACGTAATAGGCAA 59.620 38.462 22.11 0.00 40.02 4.52
1129 3534 5.268118 AGGTACCTTACGTAATAGGCAAC 57.732 43.478 9.21 9.18 34.79 4.17
1130 3535 4.044426 GGTACCTTACGTAATAGGCAACG 58.956 47.826 8.76 0.00 44.47 4.10
1136 3541 1.999048 CGTAATAGGCAACGTGGACA 58.001 50.000 0.00 0.00 46.39 4.02
1137 3542 2.339418 CGTAATAGGCAACGTGGACAA 58.661 47.619 0.00 0.00 46.39 3.18
1138 3543 2.347452 CGTAATAGGCAACGTGGACAAG 59.653 50.000 0.00 0.00 46.39 3.16
1139 3544 2.561478 AATAGGCAACGTGGACAAGT 57.439 45.000 0.00 0.00 46.39 3.16
1140 3545 3.688694 AATAGGCAACGTGGACAAGTA 57.311 42.857 0.00 0.00 46.39 2.24
1141 3546 3.688694 ATAGGCAACGTGGACAAGTAA 57.311 42.857 0.00 0.00 46.39 2.24
1142 3547 1.878953 AGGCAACGTGGACAAGTAAG 58.121 50.000 0.00 0.00 46.39 2.34
1143 3548 1.414919 AGGCAACGTGGACAAGTAAGA 59.585 47.619 0.00 0.00 46.39 2.10
1144 3549 2.038557 AGGCAACGTGGACAAGTAAGAT 59.961 45.455 0.00 0.00 46.39 2.40
1145 3550 2.812011 GGCAACGTGGACAAGTAAGATT 59.188 45.455 0.00 0.00 0.00 2.40
1146 3551 3.364964 GGCAACGTGGACAAGTAAGATTG 60.365 47.826 0.00 0.00 36.22 2.67
1147 3552 3.364964 GCAACGTGGACAAGTAAGATTGG 60.365 47.826 0.00 0.00 34.36 3.16
1148 3553 4.062293 CAACGTGGACAAGTAAGATTGGA 58.938 43.478 0.00 0.00 34.36 3.53
1149 3554 4.553330 ACGTGGACAAGTAAGATTGGAT 57.447 40.909 0.00 0.00 34.36 3.41
1150 3555 4.253685 ACGTGGACAAGTAAGATTGGATG 58.746 43.478 0.00 0.00 34.36 3.51
1151 3556 4.253685 CGTGGACAAGTAAGATTGGATGT 58.746 43.478 0.00 0.00 34.36 3.06
1152 3557 5.046878 ACGTGGACAAGTAAGATTGGATGTA 60.047 40.000 0.00 0.00 34.36 2.29
1153 3558 5.872617 CGTGGACAAGTAAGATTGGATGTAA 59.127 40.000 0.00 0.00 34.36 2.41
1154 3559 6.370442 CGTGGACAAGTAAGATTGGATGTAAA 59.630 38.462 0.00 0.00 34.36 2.01
1155 3560 7.094975 CGTGGACAAGTAAGATTGGATGTAAAA 60.095 37.037 0.00 0.00 34.36 1.52
1156 3561 8.573035 GTGGACAAGTAAGATTGGATGTAAAAA 58.427 33.333 0.00 0.00 34.36 1.94
1157 3562 8.792633 TGGACAAGTAAGATTGGATGTAAAAAG 58.207 33.333 0.00 0.00 34.36 2.27
1158 3563 9.010029 GGACAAGTAAGATTGGATGTAAAAAGA 57.990 33.333 0.00 0.00 34.36 2.52
1165 3570 7.651027 AGATTGGATGTAAAAAGATTGAGGG 57.349 36.000 0.00 0.00 0.00 4.30
1166 3571 6.608808 AGATTGGATGTAAAAAGATTGAGGGG 59.391 38.462 0.00 0.00 0.00 4.79
1167 3572 4.023291 TGGATGTAAAAAGATTGAGGGGC 58.977 43.478 0.00 0.00 0.00 5.80
1168 3573 3.384789 GGATGTAAAAAGATTGAGGGGCC 59.615 47.826 0.00 0.00 0.00 5.80
1169 3574 2.815158 TGTAAAAAGATTGAGGGGCCC 58.185 47.619 17.12 17.12 0.00 5.80
1170 3575 2.110899 TGTAAAAAGATTGAGGGGCCCA 59.889 45.455 27.72 3.88 0.00 5.36
1171 3576 1.644509 AAAAAGATTGAGGGGCCCAC 58.355 50.000 27.72 20.67 0.00 4.61
1172 3577 0.252239 AAAAGATTGAGGGGCCCACC 60.252 55.000 27.72 16.81 39.11 4.61
1182 3587 4.559148 GGCCCACCCCTTGAAAAT 57.441 55.556 0.00 0.00 0.00 1.82
1183 3588 2.286826 GGCCCACCCCTTGAAAATC 58.713 57.895 0.00 0.00 0.00 2.17
1184 3589 0.544120 GGCCCACCCCTTGAAAATCA 60.544 55.000 0.00 0.00 0.00 2.57
1185 3590 0.897621 GCCCACCCCTTGAAAATCAG 59.102 55.000 0.00 0.00 0.00 2.90
1186 3591 1.560505 CCCACCCCTTGAAAATCAGG 58.439 55.000 0.00 0.00 0.00 3.86
1187 3592 1.560505 CCACCCCTTGAAAATCAGGG 58.439 55.000 1.75 1.75 42.66 4.45
1188 3593 1.077005 CCACCCCTTGAAAATCAGGGA 59.923 52.381 9.83 0.00 45.53 4.20
1189 3594 2.450476 CACCCCTTGAAAATCAGGGAG 58.550 52.381 9.83 0.00 45.53 4.30
1190 3595 1.359130 ACCCCTTGAAAATCAGGGAGG 59.641 52.381 9.83 10.94 45.53 4.30
1191 3596 1.359130 CCCCTTGAAAATCAGGGAGGT 59.641 52.381 9.83 0.00 45.53 3.85
1192 3597 2.450476 CCCTTGAAAATCAGGGAGGTG 58.550 52.381 9.83 0.00 45.53 4.00
1193 3598 2.041620 CCCTTGAAAATCAGGGAGGTGA 59.958 50.000 9.83 0.00 45.53 4.02
1194 3599 3.350833 CCTTGAAAATCAGGGAGGTGAG 58.649 50.000 2.55 0.00 45.53 3.51
1195 3600 3.009473 CCTTGAAAATCAGGGAGGTGAGA 59.991 47.826 2.55 0.00 45.53 3.27
1196 3601 3.988976 TGAAAATCAGGGAGGTGAGAG 57.011 47.619 0.00 0.00 0.00 3.20
1197 3602 3.520696 TGAAAATCAGGGAGGTGAGAGA 58.479 45.455 0.00 0.00 0.00 3.10
1198 3603 3.909995 TGAAAATCAGGGAGGTGAGAGAA 59.090 43.478 0.00 0.00 0.00 2.87
1199 3604 4.537688 TGAAAATCAGGGAGGTGAGAGAAT 59.462 41.667 0.00 0.00 0.00 2.40
1248 4853 1.305930 GGTGGTTTGATCCAGACGGC 61.306 60.000 0.00 0.00 38.23 5.68
1260 4865 0.609131 CAGACGGCCCAATGTTTCCT 60.609 55.000 0.00 0.00 0.00 3.36
1265 4870 0.898326 GGCCCAATGTTTCCTCCGTT 60.898 55.000 0.00 0.00 0.00 4.44
1283 4888 1.202348 GTTGCCAGATTGTAACCCAGC 59.798 52.381 0.00 0.00 0.00 4.85
1285 4890 1.075374 TGCCAGATTGTAACCCAGCTT 59.925 47.619 0.00 0.00 0.00 3.74
1313 4918 2.769663 ACGGCTTGATGTACCTATTGGA 59.230 45.455 0.00 0.00 37.04 3.53
1404 5009 3.057315 CCAACAGCTTTGGATTCGAATGT 60.057 43.478 16.96 2.90 42.06 2.71
1558 5163 3.872459 GGAGATCCCAATTCACTGGAT 57.128 47.619 0.00 0.00 41.54 3.41
1579 5184 1.144969 GTTGTCGACGGCAATGAAGA 58.855 50.000 18.98 0.00 0.00 2.87
1640 5245 2.918712 AGGTTCTATGATTGGCCTCG 57.081 50.000 3.32 0.00 0.00 4.63
1641 5246 1.417890 AGGTTCTATGATTGGCCTCGG 59.582 52.381 3.32 0.00 0.00 4.63
1642 5247 1.416401 GGTTCTATGATTGGCCTCGGA 59.584 52.381 3.32 0.00 0.00 4.55
1643 5248 2.548920 GGTTCTATGATTGGCCTCGGAG 60.549 54.545 3.32 0.00 0.00 4.63
1663 5268 0.883833 GACCGTCCTCGTTGACCTTA 59.116 55.000 2.35 0.00 35.01 2.69
1797 5402 4.769345 AGCAAAGGAATTTTGGGAAACA 57.231 36.364 2.28 0.00 45.09 2.83
1802 5407 6.218746 CAAAGGAATTTTGGGAAACAGAGAG 58.781 40.000 0.00 0.00 41.99 3.20
2033 5642 1.142060 TCCAATATCGCGGACCCAAAT 59.858 47.619 6.13 0.00 0.00 2.32
2046 5655 4.616953 GGACCCAAATGCCGTTAAATATG 58.383 43.478 0.00 0.00 0.00 1.78
2047 5656 4.339814 GGACCCAAATGCCGTTAAATATGA 59.660 41.667 0.00 0.00 0.00 2.15
2106 5715 1.070038 GAATTTTCACGTACGCCGGA 58.930 50.000 16.72 8.02 42.24 5.14
2129 5738 4.742201 TGCTCTTCGCCGAGTGCC 62.742 66.667 5.81 0.00 35.78 5.01
2137 5746 2.829206 CGCCGAGTGCCAAAACACA 61.829 57.895 0.00 0.00 43.23 3.72
2175 5784 5.111293 CAAACTTTGCCAAGTGTCATTCTT 58.889 37.500 3.60 0.00 42.89 2.52
2177 5786 3.953612 ACTTTGCCAAGTGTCATTCTTGA 59.046 39.130 1.73 0.00 42.05 3.02
2194 5803 2.595124 TGACAAACTCAGCTTCACGA 57.405 45.000 0.00 0.00 0.00 4.35
2204 5813 1.082756 GCTTCACGACAAACTGCCG 60.083 57.895 0.00 0.00 0.00 5.69
2206 5815 1.493772 CTTCACGACAAACTGCCGTA 58.506 50.000 0.00 0.00 33.27 4.02
2227 5854 4.357947 GCCGTCACTGCCTCACGA 62.358 66.667 0.00 0.00 35.49 4.35
2236 5863 0.320374 CTGCCTCACGACAAACCCTA 59.680 55.000 0.00 0.00 0.00 3.53
2239 5866 1.541670 GCCTCACGACAAACCCTACAA 60.542 52.381 0.00 0.00 0.00 2.41
2248 5875 0.604511 AAACCCTACAAACGCCGAGG 60.605 55.000 0.00 0.00 0.00 4.63
2335 5962 0.864797 GTACTTTACCGAGAGCCGCG 60.865 60.000 0.00 0.00 36.84 6.46
2336 5963 1.026182 TACTTTACCGAGAGCCGCGA 61.026 55.000 8.23 0.00 36.84 5.87
2415 6047 2.024176 ACTGACATGTGGTCCCACTA 57.976 50.000 16.91 4.80 46.38 2.74
2512 6145 1.227497 CTCTCGGCAATCCTCCTGC 60.227 63.158 0.00 0.00 39.16 4.85
2513 6146 1.964608 CTCTCGGCAATCCTCCTGCA 61.965 60.000 0.00 0.00 41.78 4.41
2514 6147 1.523258 CTCGGCAATCCTCCTGCAG 60.523 63.158 6.78 6.78 41.78 4.41
2515 6148 3.207669 CGGCAATCCTCCTGCAGC 61.208 66.667 8.66 0.00 41.78 5.25
2516 6149 2.274760 GGCAATCCTCCTGCAGCT 59.725 61.111 8.66 0.00 41.78 4.24
2518 6151 1.664321 GGCAATCCTCCTGCAGCTTG 61.664 60.000 8.66 7.41 41.78 4.01
2519 6152 1.807886 CAATCCTCCTGCAGCTTGC 59.192 57.895 8.66 1.70 45.29 4.01
2568 7137 1.437573 CTTGCGATGCGAGGAGGTA 59.562 57.895 0.00 0.00 36.48 3.08
2670 7239 1.515736 GGACGTAGGTTCGGCTTCG 60.516 63.158 0.00 0.00 39.03 3.79
2739 7308 2.510238 GCCGACTCGCTGCAGAAT 60.510 61.111 20.43 0.00 0.00 2.40
2833 7402 5.627503 GCCTCCTGCAAAATTAACCATCAAT 60.628 40.000 0.00 0.00 40.77 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.813908 GTGATGCACGGGTCGTCC 60.814 66.667 0.00 0.00 38.32 4.79
2 3 2.813908 GGTGATGCACGGGTCGTC 60.814 66.667 0.00 0.00 38.32 4.20
3 4 3.296709 GAGGTGATGCACGGGTCGT 62.297 63.158 0.00 0.00 42.36 4.34
4 5 2.509336 GAGGTGATGCACGGGTCG 60.509 66.667 0.00 0.00 34.83 4.79
5 6 2.125106 GGAGGTGATGCACGGGTC 60.125 66.667 0.00 0.00 34.83 4.46
6 7 2.469465 CTTGGAGGTGATGCACGGGT 62.469 60.000 0.00 0.00 34.83 5.28
7 8 1.746615 CTTGGAGGTGATGCACGGG 60.747 63.158 0.00 0.00 34.83 5.28
8 9 0.249120 TACTTGGAGGTGATGCACGG 59.751 55.000 0.00 0.00 34.83 4.94
9 10 2.093306 TTACTTGGAGGTGATGCACG 57.907 50.000 0.00 0.00 34.83 5.34
10 11 3.758554 ACATTTACTTGGAGGTGATGCAC 59.241 43.478 0.00 0.00 0.00 4.57
11 12 4.032960 ACATTTACTTGGAGGTGATGCA 57.967 40.909 0.00 0.00 0.00 3.96
12 13 5.447279 CGTTACATTTACTTGGAGGTGATGC 60.447 44.000 0.00 0.00 0.00 3.91
13 14 5.064707 CCGTTACATTTACTTGGAGGTGATG 59.935 44.000 0.00 0.00 0.00 3.07
14 15 5.183228 CCGTTACATTTACTTGGAGGTGAT 58.817 41.667 0.00 0.00 0.00 3.06
15 16 4.563993 CCCGTTACATTTACTTGGAGGTGA 60.564 45.833 0.00 0.00 0.00 4.02
16 17 3.687698 CCCGTTACATTTACTTGGAGGTG 59.312 47.826 0.00 0.00 0.00 4.00
17 18 3.871074 GCCCGTTACATTTACTTGGAGGT 60.871 47.826 0.00 0.00 0.00 3.85
18 19 2.681344 GCCCGTTACATTTACTTGGAGG 59.319 50.000 0.00 0.00 0.00 4.30
19 20 2.681344 GGCCCGTTACATTTACTTGGAG 59.319 50.000 0.00 0.00 0.00 3.86
20 21 2.040012 TGGCCCGTTACATTTACTTGGA 59.960 45.455 0.00 0.00 0.00 3.53
21 22 2.438411 TGGCCCGTTACATTTACTTGG 58.562 47.619 0.00 0.00 0.00 3.61
22 23 3.066203 GGATGGCCCGTTACATTTACTTG 59.934 47.826 0.00 0.00 0.00 3.16
23 24 3.284617 GGATGGCCCGTTACATTTACTT 58.715 45.455 0.00 0.00 0.00 2.24
24 25 2.240160 TGGATGGCCCGTTACATTTACT 59.760 45.455 0.00 0.00 37.93 2.24
25 26 2.645802 TGGATGGCCCGTTACATTTAC 58.354 47.619 0.00 0.00 37.93 2.01
26 27 3.586470 ATGGATGGCCCGTTACATTTA 57.414 42.857 0.00 0.00 37.93 1.40
27 28 2.452600 ATGGATGGCCCGTTACATTT 57.547 45.000 0.00 0.00 37.93 2.32
28 29 2.814097 GCTATGGATGGCCCGTTACATT 60.814 50.000 0.00 0.00 37.93 2.71
29 30 1.271379 GCTATGGATGGCCCGTTACAT 60.271 52.381 0.00 0.00 37.93 2.29
30 31 0.107831 GCTATGGATGGCCCGTTACA 59.892 55.000 0.00 0.00 37.93 2.41
31 32 0.107831 TGCTATGGATGGCCCGTTAC 59.892 55.000 0.00 0.00 37.93 2.50
32 33 1.064003 ATGCTATGGATGGCCCGTTA 58.936 50.000 0.00 0.00 37.93 3.18
33 34 0.185901 AATGCTATGGATGGCCCGTT 59.814 50.000 0.00 0.00 37.93 4.44
34 35 0.185901 AAATGCTATGGATGGCCCGT 59.814 50.000 0.00 0.00 37.93 5.28
35 36 2.198827 TAAATGCTATGGATGGCCCG 57.801 50.000 0.00 0.00 37.93 6.13
36 37 4.082026 GTCATTAAATGCTATGGATGGCCC 60.082 45.833 0.00 0.00 32.80 5.80
37 38 4.523943 TGTCATTAAATGCTATGGATGGCC 59.476 41.667 0.00 0.00 32.80 5.36
38 39 5.009911 TGTGTCATTAAATGCTATGGATGGC 59.990 40.000 0.00 0.00 34.56 4.40
39 40 6.441274 GTGTGTCATTAAATGCTATGGATGG 58.559 40.000 0.00 0.00 0.00 3.51
40 41 6.039605 TGGTGTGTCATTAAATGCTATGGATG 59.960 38.462 0.00 0.00 0.00 3.51
41 42 6.128486 TGGTGTGTCATTAAATGCTATGGAT 58.872 36.000 0.00 0.00 0.00 3.41
42 43 5.504853 TGGTGTGTCATTAAATGCTATGGA 58.495 37.500 0.00 0.00 0.00 3.41
43 44 5.221106 CCTGGTGTGTCATTAAATGCTATGG 60.221 44.000 0.00 0.00 0.00 2.74
44 45 5.357878 ACCTGGTGTGTCATTAAATGCTATG 59.642 40.000 0.00 0.00 0.00 2.23
45 46 5.509498 ACCTGGTGTGTCATTAAATGCTAT 58.491 37.500 0.00 0.00 0.00 2.97
46 47 4.917385 ACCTGGTGTGTCATTAAATGCTA 58.083 39.130 0.00 0.00 0.00 3.49
47 48 3.758554 GACCTGGTGTGTCATTAAATGCT 59.241 43.478 2.82 0.00 32.91 3.79
48 49 3.426159 CGACCTGGTGTGTCATTAAATGC 60.426 47.826 2.82 0.00 32.91 3.56
49 50 3.126858 CCGACCTGGTGTGTCATTAAATG 59.873 47.826 2.82 0.00 32.91 2.32
50 51 3.343617 CCGACCTGGTGTGTCATTAAAT 58.656 45.455 2.82 0.00 32.91 1.40
51 52 2.773487 CCGACCTGGTGTGTCATTAAA 58.227 47.619 2.82 0.00 32.91 1.52
52 53 1.609580 GCCGACCTGGTGTGTCATTAA 60.610 52.381 2.82 0.00 41.21 1.40
53 54 0.036765 GCCGACCTGGTGTGTCATTA 60.037 55.000 2.82 0.00 41.21 1.90
54 55 1.302511 GCCGACCTGGTGTGTCATT 60.303 57.895 2.82 0.00 41.21 2.57
55 56 2.347490 GCCGACCTGGTGTGTCAT 59.653 61.111 2.82 0.00 41.21 3.06
56 57 3.936203 GGCCGACCTGGTGTGTCA 61.936 66.667 2.82 0.00 41.21 3.58
57 58 4.699522 GGGCCGACCTGGTGTGTC 62.700 72.222 2.82 0.00 41.21 3.67
66 67 4.468689 GTGGTGCTAGGGCCGACC 62.469 72.222 0.00 3.91 35.74 4.79
67 68 3.702048 TGTGGTGCTAGGGCCGAC 61.702 66.667 0.00 0.00 37.74 4.79
68 69 3.702048 GTGTGGTGCTAGGGCCGA 61.702 66.667 0.00 0.00 37.74 5.54
70 71 4.016706 ACGTGTGGTGCTAGGGCC 62.017 66.667 0.00 0.00 37.74 5.80
71 72 2.725203 TTCACGTGTGGTGCTAGGGC 62.725 60.000 16.51 0.00 46.56 5.19
72 73 0.250124 TTTCACGTGTGGTGCTAGGG 60.250 55.000 16.51 0.00 46.56 3.53
73 74 1.588674 TTTTCACGTGTGGTGCTAGG 58.411 50.000 16.51 0.00 46.56 3.02
74 75 3.896648 ATTTTTCACGTGTGGTGCTAG 57.103 42.857 16.51 0.00 46.56 3.42
75 76 3.303461 CGAATTTTTCACGTGTGGTGCTA 60.303 43.478 16.51 0.00 46.56 3.49
76 77 2.540769 CGAATTTTTCACGTGTGGTGCT 60.541 45.455 16.51 0.00 46.56 4.40
77 78 1.778591 CGAATTTTTCACGTGTGGTGC 59.221 47.619 16.51 0.00 46.56 5.01
79 80 2.018515 ACCGAATTTTTCACGTGTGGT 58.981 42.857 16.51 8.69 0.00 4.16
80 81 2.766970 ACCGAATTTTTCACGTGTGG 57.233 45.000 16.51 8.11 0.00 4.17
81 82 4.435231 GTGTAACCGAATTTTTCACGTGTG 59.565 41.667 16.51 0.00 0.00 3.82
82 83 4.094590 TGTGTAACCGAATTTTTCACGTGT 59.905 37.500 16.51 0.00 34.36 4.49
83 84 4.435231 GTGTGTAACCGAATTTTTCACGTG 59.565 41.667 9.94 9.94 34.36 4.49
84 85 4.094590 TGTGTGTAACCGAATTTTTCACGT 59.905 37.500 0.00 0.00 34.36 4.49
85 86 4.435231 GTGTGTGTAACCGAATTTTTCACG 59.565 41.667 0.00 0.00 34.36 4.35
86 87 5.333513 TGTGTGTGTAACCGAATTTTTCAC 58.666 37.500 0.00 0.00 34.36 3.18
87 88 5.562506 TGTGTGTGTAACCGAATTTTTCA 57.437 34.783 0.00 0.00 34.36 2.69
88 89 4.439776 GCTGTGTGTGTAACCGAATTTTTC 59.560 41.667 0.00 0.00 34.36 2.29
89 90 4.356289 GCTGTGTGTGTAACCGAATTTTT 58.644 39.130 0.00 0.00 34.36 1.94
90 91 3.243267 GGCTGTGTGTGTAACCGAATTTT 60.243 43.478 0.00 0.00 34.36 1.82
91 92 2.292292 GGCTGTGTGTGTAACCGAATTT 59.708 45.455 0.00 0.00 34.36 1.82
92 93 1.877443 GGCTGTGTGTGTAACCGAATT 59.123 47.619 0.00 0.00 34.36 2.17
93 94 1.519408 GGCTGTGTGTGTAACCGAAT 58.481 50.000 0.00 0.00 34.36 3.34
94 95 0.533308 GGGCTGTGTGTGTAACCGAA 60.533 55.000 0.00 0.00 34.36 4.30
95 96 1.070105 GGGCTGTGTGTGTAACCGA 59.930 57.895 0.00 0.00 34.36 4.69
96 97 1.227704 TGGGCTGTGTGTGTAACCG 60.228 57.895 0.00 0.00 34.36 4.44
97 98 1.503818 CGTGGGCTGTGTGTGTAACC 61.504 60.000 0.00 0.00 34.36 2.85
98 99 0.812412 ACGTGGGCTGTGTGTGTAAC 60.812 55.000 0.00 0.00 37.35 2.50
99 100 0.751452 TACGTGGGCTGTGTGTGTAA 59.249 50.000 0.00 0.00 0.00 2.41
100 101 0.032403 GTACGTGGGCTGTGTGTGTA 59.968 55.000 0.00 0.00 0.00 2.90
101 102 1.227438 GTACGTGGGCTGTGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
102 103 0.812014 TTGTACGTGGGCTGTGTGTG 60.812 55.000 0.00 0.00 0.00 3.82
103 104 0.107831 ATTGTACGTGGGCTGTGTGT 59.892 50.000 0.00 0.00 0.00 3.72
104 105 0.516877 CATTGTACGTGGGCTGTGTG 59.483 55.000 0.00 0.00 0.00 3.82
105 106 1.234615 GCATTGTACGTGGGCTGTGT 61.235 55.000 0.00 0.00 0.00 3.72
106 107 0.955428 AGCATTGTACGTGGGCTGTG 60.955 55.000 0.00 0.00 32.76 3.66
107 108 0.611200 TAGCATTGTACGTGGGCTGT 59.389 50.000 0.00 0.00 36.10 4.40
108 109 1.290203 CTAGCATTGTACGTGGGCTG 58.710 55.000 0.00 0.00 36.10 4.85
109 110 0.462047 GCTAGCATTGTACGTGGGCT 60.462 55.000 10.63 2.31 38.55 5.19
110 111 0.742990 TGCTAGCATTGTACGTGGGC 60.743 55.000 14.93 0.00 0.00 5.36
111 112 1.006832 GTGCTAGCATTGTACGTGGG 58.993 55.000 22.51 0.00 0.00 4.61
112 113 1.660607 CTGTGCTAGCATTGTACGTGG 59.339 52.381 22.51 0.00 0.00 4.94
124 125 2.889503 GCCTCGCTGCTGTGCTAG 60.890 66.667 0.00 0.00 0.00 3.42
125 126 4.457496 GGCCTCGCTGCTGTGCTA 62.457 66.667 0.00 0.00 0.00 3.49
133 134 2.383245 AATACATCGGGGCCTCGCTG 62.383 60.000 26.62 26.62 33.22 5.18
134 135 1.696097 AAATACATCGGGGCCTCGCT 61.696 55.000 23.67 8.34 0.00 4.93
135 136 0.818040 AAAATACATCGGGGCCTCGC 60.818 55.000 23.67 0.00 0.00 5.03
136 137 0.944386 CAAAATACATCGGGGCCTCG 59.056 55.000 22.26 22.26 0.00 4.63
137 138 1.947456 GTCAAAATACATCGGGGCCTC 59.053 52.381 0.84 0.00 0.00 4.70
138 139 1.564348 AGTCAAAATACATCGGGGCCT 59.436 47.619 0.84 0.00 0.00 5.19
139 140 2.052782 AGTCAAAATACATCGGGGCC 57.947 50.000 0.00 0.00 0.00 5.80
140 141 4.497507 GCTAAAGTCAAAATACATCGGGGC 60.498 45.833 0.00 0.00 0.00 5.80
141 142 4.638421 TGCTAAAGTCAAAATACATCGGGG 59.362 41.667 0.00 0.00 0.00 5.73
142 143 5.811399 TGCTAAAGTCAAAATACATCGGG 57.189 39.130 0.00 0.00 0.00 5.14
143 144 6.912591 GGATTGCTAAAGTCAAAATACATCGG 59.087 38.462 0.00 0.00 0.00 4.18
144 145 6.912591 GGGATTGCTAAAGTCAAAATACATCG 59.087 38.462 0.00 0.00 0.00 3.84
145 146 7.203218 GGGGATTGCTAAAGTCAAAATACATC 58.797 38.462 0.00 0.00 0.00 3.06
146 147 6.183360 CGGGGATTGCTAAAGTCAAAATACAT 60.183 38.462 0.00 0.00 0.00 2.29
147 148 5.124776 CGGGGATTGCTAAAGTCAAAATACA 59.875 40.000 0.00 0.00 0.00 2.29
148 149 5.124936 ACGGGGATTGCTAAAGTCAAAATAC 59.875 40.000 0.00 0.00 0.00 1.89
149 150 5.258051 ACGGGGATTGCTAAAGTCAAAATA 58.742 37.500 0.00 0.00 0.00 1.40
150 151 4.086457 ACGGGGATTGCTAAAGTCAAAAT 58.914 39.130 0.00 0.00 0.00 1.82
151 152 3.492337 ACGGGGATTGCTAAAGTCAAAA 58.508 40.909 0.00 0.00 0.00 2.44
152 153 3.149005 ACGGGGATTGCTAAAGTCAAA 57.851 42.857 0.00 0.00 0.00 2.69
153 154 2.871096 ACGGGGATTGCTAAAGTCAA 57.129 45.000 0.00 0.00 0.00 3.18
154 155 4.502604 GCTATACGGGGATTGCTAAAGTCA 60.503 45.833 0.00 0.00 0.00 3.41
155 156 3.995048 GCTATACGGGGATTGCTAAAGTC 59.005 47.826 0.00 0.00 0.00 3.01
156 157 3.646637 AGCTATACGGGGATTGCTAAAGT 59.353 43.478 0.00 0.00 36.35 2.66
157 158 4.273148 AGCTATACGGGGATTGCTAAAG 57.727 45.455 0.00 0.00 36.35 1.85
158 159 5.143376 GTAGCTATACGGGGATTGCTAAA 57.857 43.478 8.32 0.00 40.32 1.85
159 160 4.796038 GTAGCTATACGGGGATTGCTAA 57.204 45.455 8.32 0.00 40.32 3.09
171 172 2.735823 CCCGTTTCCACGTAGCTATAC 58.264 52.381 0.00 0.00 45.62 1.47
172 173 1.067516 GCCCGTTTCCACGTAGCTATA 59.932 52.381 0.00 0.00 45.62 1.31
173 174 0.179092 GCCCGTTTCCACGTAGCTAT 60.179 55.000 0.00 0.00 45.62 2.97
174 175 1.216178 GCCCGTTTCCACGTAGCTA 59.784 57.895 0.00 0.00 45.62 3.32
175 176 2.047560 GCCCGTTTCCACGTAGCT 60.048 61.111 0.00 0.00 45.62 3.32
176 177 2.357760 TGCCCGTTTCCACGTAGC 60.358 61.111 0.00 0.00 45.62 3.58
177 178 2.377310 CGTGCCCGTTTCCACGTAG 61.377 63.158 5.13 0.00 46.90 3.51
178 179 2.356075 CGTGCCCGTTTCCACGTA 60.356 61.111 5.13 0.00 46.90 3.57
181 182 4.322385 GTGCGTGCCCGTTTCCAC 62.322 66.667 0.00 0.00 36.15 4.02
182 183 4.858680 TGTGCGTGCCCGTTTCCA 62.859 61.111 0.00 0.00 36.15 3.53
183 184 4.322385 GTGTGCGTGCCCGTTTCC 62.322 66.667 0.00 0.00 36.15 3.13
184 185 2.780149 GATGTGTGCGTGCCCGTTTC 62.780 60.000 0.00 0.00 36.15 2.78
185 186 2.903547 GATGTGTGCGTGCCCGTTT 61.904 57.895 0.00 0.00 36.15 3.60
186 187 3.353836 GATGTGTGCGTGCCCGTT 61.354 61.111 0.00 0.00 36.15 4.44
195 196 4.489795 CAGCGTCGCGATGTGTGC 62.490 66.667 27.70 18.52 38.50 4.57
196 197 4.489795 GCAGCGTCGCGATGTGTG 62.490 66.667 27.70 24.22 45.34 3.82
198 199 3.087273 AATGCAGCGTCGCGATGTG 62.087 57.895 27.70 23.16 45.34 3.21
199 200 2.815211 AATGCAGCGTCGCGATGT 60.815 55.556 27.70 13.07 45.34 3.06
200 201 2.350425 CAATGCAGCGTCGCGATG 60.350 61.111 23.84 23.84 46.35 3.84
201 202 4.228097 GCAATGCAGCGTCGCGAT 62.228 61.111 14.06 2.53 33.35 4.58
224 225 4.838152 TGCAGGCCGGAATCTCGC 62.838 66.667 5.05 6.52 0.00 5.03
225 226 2.892425 GTGCAGGCCGGAATCTCG 60.892 66.667 5.05 0.00 0.00 4.04
226 227 2.892425 CGTGCAGGCCGGAATCTC 60.892 66.667 5.05 0.00 0.00 2.75
244 245 1.652563 GGTTTTGGTGACGGAGCAC 59.347 57.895 0.00 0.00 38.05 4.40
245 246 1.527380 GGGTTTTGGTGACGGAGCA 60.527 57.895 0.00 0.00 0.00 4.26
246 247 2.265904 GGGGTTTTGGTGACGGAGC 61.266 63.158 0.00 0.00 0.00 4.70
247 248 1.149627 TGGGGTTTTGGTGACGGAG 59.850 57.895 0.00 0.00 0.00 4.63
248 249 1.152922 GTGGGGTTTTGGTGACGGA 60.153 57.895 0.00 0.00 0.00 4.69
249 250 1.454111 TGTGGGGTTTTGGTGACGG 60.454 57.895 0.00 0.00 0.00 4.79
250 251 0.750182 AGTGTGGGGTTTTGGTGACG 60.750 55.000 0.00 0.00 0.00 4.35
251 252 1.029681 GAGTGTGGGGTTTTGGTGAC 58.970 55.000 0.00 0.00 0.00 3.67
252 253 0.106419 GGAGTGTGGGGTTTTGGTGA 60.106 55.000 0.00 0.00 0.00 4.02
253 254 0.106217 AGGAGTGTGGGGTTTTGGTG 60.106 55.000 0.00 0.00 0.00 4.17
254 255 1.525175 TAGGAGTGTGGGGTTTTGGT 58.475 50.000 0.00 0.00 0.00 3.67
255 256 2.308866 AGATAGGAGTGTGGGGTTTTGG 59.691 50.000 0.00 0.00 0.00 3.28
256 257 3.721087 AGATAGGAGTGTGGGGTTTTG 57.279 47.619 0.00 0.00 0.00 2.44
257 258 3.780850 CCTAGATAGGAGTGTGGGGTTTT 59.219 47.826 0.00 0.00 46.63 2.43
258 259 3.246387 ACCTAGATAGGAGTGTGGGGTTT 60.246 47.826 12.90 0.00 46.63 3.27
259 260 2.318207 ACCTAGATAGGAGTGTGGGGTT 59.682 50.000 12.90 0.00 46.63 4.11
260 261 1.938069 ACCTAGATAGGAGTGTGGGGT 59.062 52.381 12.90 0.00 46.63 4.95
261 262 2.777459 ACCTAGATAGGAGTGTGGGG 57.223 55.000 12.90 0.00 46.63 4.96
298 299 6.772716 TCAAGGTAAGCAGTGATTCTCTTTTT 59.227 34.615 0.00 0.00 0.00 1.94
300 301 5.703130 GTCAAGGTAAGCAGTGATTCTCTTT 59.297 40.000 0.00 0.00 0.00 2.52
319 320 0.534412 AGGAGAGCATGGACGTCAAG 59.466 55.000 18.91 7.32 0.00 3.02
329 330 1.380403 CGAGGTGACGAGGAGAGCAT 61.380 60.000 0.00 0.00 35.09 3.79
331 332 2.041686 ACGAGGTGACGAGGAGAGC 61.042 63.158 0.00 0.00 37.03 4.09
371 372 1.203313 TGAGGGGTCAAAGCCTAGAGT 60.203 52.381 0.00 0.00 35.71 3.24
373 374 2.038863 TTGAGGGGTCAAAGCCTAGA 57.961 50.000 0.00 0.00 35.71 2.43
374 375 2.716217 CTTTGAGGGGTCAAAGCCTAG 58.284 52.381 13.40 0.00 46.41 3.02
375 376 2.879103 CTTTGAGGGGTCAAAGCCTA 57.121 50.000 13.40 0.00 46.41 3.93
383 384 4.686396 GCCCTATAGTTTCTTTGAGGGGTC 60.686 50.000 6.89 0.00 43.39 4.46
444 445 9.807386 CGTTTTCCTTTTTCTATACACAAGTAG 57.193 33.333 0.00 0.00 32.86 2.57
473 476 6.083630 CCGATTTATAATTACAATGCCACGG 58.916 40.000 0.00 0.00 0.00 4.94
490 503 2.990514 CACGACATGTGTCACCGATTTA 59.009 45.455 1.15 0.00 44.99 1.40
491 504 1.798223 CACGACATGTGTCACCGATTT 59.202 47.619 1.15 0.00 44.99 2.17
531 2847 2.853290 CGGGCCGGACGCTAGTTAT 61.853 63.158 20.56 0.00 37.74 1.89
579 2898 4.667519 ACCCACGATGTAATAAGTCTCC 57.332 45.455 0.00 0.00 0.00 3.71
616 2935 3.808174 CGGAGGAGACGACTTTTCTTTTT 59.192 43.478 0.00 0.00 0.00 1.94
617 2936 3.391049 CGGAGGAGACGACTTTTCTTTT 58.609 45.455 0.00 0.00 0.00 2.27
618 2937 3.027974 CGGAGGAGACGACTTTTCTTT 57.972 47.619 0.00 0.00 0.00 2.52
619 2938 2.726832 CGGAGGAGACGACTTTTCTT 57.273 50.000 0.00 0.00 0.00 2.52
634 2953 2.417516 CCAGTATGTCCGCCGGAG 59.582 66.667 5.82 0.00 29.39 4.63
793 3198 1.080366 TAGTACCGCACGTTGCTGG 60.080 57.895 14.19 14.19 42.25 4.85
817 3222 7.148639 CGATCTCGAAATTCTTGTGGTAAAAGA 60.149 37.037 0.00 0.00 43.02 2.52
873 3278 4.980805 TCCGGTGGCGCAACAGAC 62.981 66.667 18.47 0.00 0.00 3.51
933 3338 1.444553 CGTCGCCTGTCAGGAGTTC 60.445 63.158 23.77 14.90 37.67 3.01
1031 3436 1.449601 AGCATACCGAACGGGCTTG 60.450 57.895 17.44 11.81 40.62 4.01
1035 3440 3.261951 CGCAGCATACCGAACGGG 61.262 66.667 17.44 1.21 43.62 5.28
1091 3496 9.855021 GTAAGGTACCTAACAATCTTTACGTAA 57.145 33.333 16.67 3.29 0.00 3.18
1092 3497 8.181573 CGTAAGGTACCTAACAATCTTTACGTA 58.818 37.037 16.67 0.00 0.00 3.57
1093 3498 7.029563 CGTAAGGTACCTAACAATCTTTACGT 58.970 38.462 16.67 0.00 0.00 3.57
1094 3499 7.029563 ACGTAAGGTACCTAACAATCTTTACG 58.970 38.462 24.79 24.79 46.39 3.18
1095 3500 9.855021 TTACGTAAGGTACCTAACAATCTTTAC 57.145 33.333 16.67 9.51 46.39 2.01
1099 3504 8.854117 CCTATTACGTAAGGTACCTAACAATCT 58.146 37.037 16.67 0.00 46.39 2.40
1100 3505 7.596621 GCCTATTACGTAAGGTACCTAACAATC 59.403 40.741 16.67 1.70 46.39 2.67
1101 3506 7.069826 TGCCTATTACGTAAGGTACCTAACAAT 59.930 37.037 16.67 12.49 46.39 2.71
1102 3507 6.379703 TGCCTATTACGTAAGGTACCTAACAA 59.620 38.462 16.67 5.86 46.39 2.83
1103 3508 5.890985 TGCCTATTACGTAAGGTACCTAACA 59.109 40.000 16.67 0.15 46.39 2.41
1104 3509 6.391227 TGCCTATTACGTAAGGTACCTAAC 57.609 41.667 16.67 0.00 46.39 2.34
1105 3510 6.459573 CGTTGCCTATTACGTAAGGTACCTAA 60.460 42.308 16.67 5.59 46.39 2.69
1106 3511 5.008613 CGTTGCCTATTACGTAAGGTACCTA 59.991 44.000 16.67 0.00 46.39 3.08
1107 3512 4.202050 CGTTGCCTATTACGTAAGGTACCT 60.202 45.833 9.21 9.21 46.39 3.08
1108 3513 4.044426 CGTTGCCTATTACGTAAGGTACC 58.956 47.826 14.25 2.73 46.39 3.34
1117 3522 1.999048 TGTCCACGTTGCCTATTACG 58.001 50.000 0.00 0.00 43.08 3.18
1118 3523 3.332034 ACTTGTCCACGTTGCCTATTAC 58.668 45.455 0.00 0.00 0.00 1.89
1119 3524 3.688694 ACTTGTCCACGTTGCCTATTA 57.311 42.857 0.00 0.00 0.00 0.98
1120 3525 2.561478 ACTTGTCCACGTTGCCTATT 57.439 45.000 0.00 0.00 0.00 1.73
1121 3526 3.259876 TCTTACTTGTCCACGTTGCCTAT 59.740 43.478 0.00 0.00 0.00 2.57
1122 3527 2.629137 TCTTACTTGTCCACGTTGCCTA 59.371 45.455 0.00 0.00 0.00 3.93
1123 3528 1.414919 TCTTACTTGTCCACGTTGCCT 59.585 47.619 0.00 0.00 0.00 4.75
1124 3529 1.873698 TCTTACTTGTCCACGTTGCC 58.126 50.000 0.00 0.00 0.00 4.52
1125 3530 3.364964 CCAATCTTACTTGTCCACGTTGC 60.365 47.826 0.00 0.00 0.00 4.17
1126 3531 4.062293 TCCAATCTTACTTGTCCACGTTG 58.938 43.478 0.00 0.00 0.00 4.10
1127 3532 4.345859 TCCAATCTTACTTGTCCACGTT 57.654 40.909 0.00 0.00 0.00 3.99
1128 3533 4.253685 CATCCAATCTTACTTGTCCACGT 58.746 43.478 0.00 0.00 0.00 4.49
1129 3534 4.253685 ACATCCAATCTTACTTGTCCACG 58.746 43.478 0.00 0.00 0.00 4.94
1130 3535 7.681939 TTTACATCCAATCTTACTTGTCCAC 57.318 36.000 0.00 0.00 0.00 4.02
1131 3536 8.698973 TTTTTACATCCAATCTTACTTGTCCA 57.301 30.769 0.00 0.00 0.00 4.02
1132 3537 9.010029 TCTTTTTACATCCAATCTTACTTGTCC 57.990 33.333 0.00 0.00 0.00 4.02
1139 3544 9.189156 CCCTCAATCTTTTTACATCCAATCTTA 57.811 33.333 0.00 0.00 0.00 2.10
1140 3545 7.124750 CCCCTCAATCTTTTTACATCCAATCTT 59.875 37.037 0.00 0.00 0.00 2.40
1141 3546 6.608808 CCCCTCAATCTTTTTACATCCAATCT 59.391 38.462 0.00 0.00 0.00 2.40
1142 3547 6.683861 GCCCCTCAATCTTTTTACATCCAATC 60.684 42.308 0.00 0.00 0.00 2.67
1143 3548 5.129320 GCCCCTCAATCTTTTTACATCCAAT 59.871 40.000 0.00 0.00 0.00 3.16
1144 3549 4.466015 GCCCCTCAATCTTTTTACATCCAA 59.534 41.667 0.00 0.00 0.00 3.53
1145 3550 4.023291 GCCCCTCAATCTTTTTACATCCA 58.977 43.478 0.00 0.00 0.00 3.41
1146 3551 3.384789 GGCCCCTCAATCTTTTTACATCC 59.615 47.826 0.00 0.00 0.00 3.51
1147 3552 3.384789 GGGCCCCTCAATCTTTTTACATC 59.615 47.826 12.23 0.00 0.00 3.06
1148 3553 3.245948 TGGGCCCCTCAATCTTTTTACAT 60.246 43.478 22.27 0.00 0.00 2.29
1149 3554 2.110899 TGGGCCCCTCAATCTTTTTACA 59.889 45.455 22.27 0.00 0.00 2.41
1150 3555 2.496070 GTGGGCCCCTCAATCTTTTTAC 59.504 50.000 22.27 0.99 0.00 2.01
1151 3556 2.558800 GGTGGGCCCCTCAATCTTTTTA 60.559 50.000 22.27 0.00 0.00 1.52
1152 3557 1.644509 GTGGGCCCCTCAATCTTTTT 58.355 50.000 22.27 0.00 0.00 1.94
1153 3558 0.252239 GGTGGGCCCCTCAATCTTTT 60.252 55.000 22.27 0.00 0.00 2.27
1154 3559 1.388133 GGTGGGCCCCTCAATCTTT 59.612 57.895 22.27 0.00 0.00 2.52
1155 3560 3.100111 GGTGGGCCCCTCAATCTT 58.900 61.111 22.27 0.00 0.00 2.40
1165 3570 0.544120 TGATTTTCAAGGGGTGGGCC 60.544 55.000 0.00 0.00 0.00 5.80
1166 3571 0.897621 CTGATTTTCAAGGGGTGGGC 59.102 55.000 0.00 0.00 0.00 5.36
1167 3572 1.560505 CCTGATTTTCAAGGGGTGGG 58.439 55.000 0.00 0.00 0.00 4.61
1168 3573 1.077005 TCCCTGATTTTCAAGGGGTGG 59.923 52.381 7.87 0.00 36.28 4.61
1169 3574 2.450476 CTCCCTGATTTTCAAGGGGTG 58.550 52.381 7.87 0.00 36.28 4.61
1170 3575 1.359130 CCTCCCTGATTTTCAAGGGGT 59.641 52.381 7.87 0.00 36.28 4.95
1171 3576 1.359130 ACCTCCCTGATTTTCAAGGGG 59.641 52.381 7.87 0.92 36.28 4.79
1172 3577 2.041620 TCACCTCCCTGATTTTCAAGGG 59.958 50.000 1.02 1.02 36.67 3.95
1173 3578 3.009473 TCTCACCTCCCTGATTTTCAAGG 59.991 47.826 0.00 0.00 30.24 3.61
1174 3579 4.019860 TCTCTCACCTCCCTGATTTTCAAG 60.020 45.833 0.00 0.00 0.00 3.02
1175 3580 3.909995 TCTCTCACCTCCCTGATTTTCAA 59.090 43.478 0.00 0.00 0.00 2.69
1176 3581 3.520696 TCTCTCACCTCCCTGATTTTCA 58.479 45.455 0.00 0.00 0.00 2.69
1177 3582 4.559862 TTCTCTCACCTCCCTGATTTTC 57.440 45.455 0.00 0.00 0.00 2.29
1178 3583 5.527026 AATTCTCTCACCTCCCTGATTTT 57.473 39.130 0.00 0.00 0.00 1.82
1179 3584 6.410157 CCATAATTCTCTCACCTCCCTGATTT 60.410 42.308 0.00 0.00 0.00 2.17
1180 3585 5.072872 CCATAATTCTCTCACCTCCCTGATT 59.927 44.000 0.00 0.00 0.00 2.57
1181 3586 4.596643 CCATAATTCTCTCACCTCCCTGAT 59.403 45.833 0.00 0.00 0.00 2.90
1182 3587 3.969976 CCATAATTCTCTCACCTCCCTGA 59.030 47.826 0.00 0.00 0.00 3.86
1183 3588 3.072184 CCCATAATTCTCTCACCTCCCTG 59.928 52.174 0.00 0.00 0.00 4.45
1184 3589 3.321950 CCCATAATTCTCTCACCTCCCT 58.678 50.000 0.00 0.00 0.00 4.20
1185 3590 2.224646 GCCCATAATTCTCTCACCTCCC 60.225 54.545 0.00 0.00 0.00 4.30
1186 3591 2.548920 CGCCCATAATTCTCTCACCTCC 60.549 54.545 0.00 0.00 0.00 4.30
1187 3592 2.365617 TCGCCCATAATTCTCTCACCTC 59.634 50.000 0.00 0.00 0.00 3.85
1188 3593 2.366916 CTCGCCCATAATTCTCTCACCT 59.633 50.000 0.00 0.00 0.00 4.00
1189 3594 2.103263 ACTCGCCCATAATTCTCTCACC 59.897 50.000 0.00 0.00 0.00 4.02
1190 3595 3.126831 CACTCGCCCATAATTCTCTCAC 58.873 50.000 0.00 0.00 0.00 3.51
1191 3596 2.103094 CCACTCGCCCATAATTCTCTCA 59.897 50.000 0.00 0.00 0.00 3.27
1192 3597 2.548920 CCCACTCGCCCATAATTCTCTC 60.549 54.545 0.00 0.00 0.00 3.20
1193 3598 1.417890 CCCACTCGCCCATAATTCTCT 59.582 52.381 0.00 0.00 0.00 3.10
1194 3599 1.884235 CCCACTCGCCCATAATTCTC 58.116 55.000 0.00 0.00 0.00 2.87
1195 3600 0.179018 GCCCACTCGCCCATAATTCT 60.179 55.000 0.00 0.00 0.00 2.40
1196 3601 1.507141 CGCCCACTCGCCCATAATTC 61.507 60.000 0.00 0.00 0.00 2.17
1197 3602 1.525995 CGCCCACTCGCCCATAATT 60.526 57.895 0.00 0.00 0.00 1.40
1198 3603 2.111043 CGCCCACTCGCCCATAAT 59.889 61.111 0.00 0.00 0.00 1.28
1199 3604 4.169696 CCGCCCACTCGCCCATAA 62.170 66.667 0.00 0.00 0.00 1.90
1248 4853 0.243636 GCAACGGAGGAAACATTGGG 59.756 55.000 0.00 0.00 0.00 4.12
1265 4870 0.698238 AGCTGGGTTACAATCTGGCA 59.302 50.000 0.00 0.00 0.00 4.92
1283 4888 1.608590 ACATCAAGCCGTTGTGGAAAG 59.391 47.619 0.00 0.00 42.00 2.62
1285 4890 2.147958 GTACATCAAGCCGTTGTGGAA 58.852 47.619 0.00 0.00 42.00 3.53
1313 4918 0.614979 TGCTAGCCCTCCGTCTTCTT 60.615 55.000 13.29 0.00 0.00 2.52
1404 5009 3.388024 ACTCAACCAAGTAGCTGTCTTCA 59.612 43.478 0.00 0.00 0.00 3.02
1547 5152 3.313012 TCGACAACGATCCAGTGAATT 57.687 42.857 0.00 0.00 43.81 2.17
1570 5175 7.020010 CACTTGATGTTAGTCTTCTTCATTGC 58.980 38.462 0.00 0.00 0.00 3.56
1643 5248 1.813728 AAGGTCAACGAGGACGGTCC 61.814 60.000 19.61 19.61 44.46 4.46
1663 5268 3.259064 CCAATTCACCGTCTCGTTGTAT 58.741 45.455 0.00 0.00 0.00 2.29
1797 5402 9.440761 ACCCAAATACTATAATTCACTCTCTCT 57.559 33.333 0.00 0.00 0.00 3.10
1909 5514 2.608090 GCTACGACAAAGTTATCTGGCC 59.392 50.000 0.00 0.00 0.00 5.36
1958 5563 8.299990 ACTAGTGATAGCAAGAGATACAGTTT 57.700 34.615 0.00 0.00 0.00 2.66
2033 5642 2.168936 ACGGTCCTCATATTTAACGGCA 59.831 45.455 0.00 0.00 0.00 5.69
2037 5646 2.542595 CCGCACGGTCCTCATATTTAAC 59.457 50.000 0.00 0.00 0.00 2.01
2038 5647 2.828877 CCGCACGGTCCTCATATTTAA 58.171 47.619 0.00 0.00 0.00 1.52
2078 5687 4.090930 CGTACGTGAAAATTCCAGTAGTGG 59.909 45.833 10.66 10.66 46.63 4.00
2129 5738 1.013596 TGCCGAGTGTCTGTGTTTTG 58.986 50.000 0.00 0.00 0.00 2.44
2137 5746 0.663153 GTTTGCTTTGCCGAGTGTCT 59.337 50.000 0.00 0.00 0.00 3.41
2171 5780 3.309682 CGTGAAGCTGAGTTTGTCAAGAA 59.690 43.478 0.00 0.00 33.60 2.52
2175 5784 2.201732 GTCGTGAAGCTGAGTTTGTCA 58.798 47.619 0.00 0.00 0.00 3.58
2177 5786 2.309528 TGTCGTGAAGCTGAGTTTGT 57.690 45.000 0.00 0.00 0.00 2.83
2183 5792 0.937304 GCAGTTTGTCGTGAAGCTGA 59.063 50.000 14.02 0.00 36.55 4.26
2194 5803 0.239879 CGGCAAATACGGCAGTTTGT 59.760 50.000 0.00 0.00 37.57 2.83
2204 5813 0.727398 GAGGCAGTGACGGCAAATAC 59.273 55.000 10.32 0.00 0.00 1.89
2206 5815 1.073025 TGAGGCAGTGACGGCAAAT 59.927 52.632 10.32 0.00 0.00 2.32
2227 5854 0.179051 TCGGCGTTTGTAGGGTTTGT 60.179 50.000 6.85 0.00 0.00 2.83
2335 5962 1.058404 GCTTTACCGAGTGTCGTGTC 58.942 55.000 0.00 0.00 38.40 3.67
2336 5963 0.386476 TGCTTTACCGAGTGTCGTGT 59.614 50.000 0.00 0.00 38.40 4.49
2349 5976 9.135189 AGAAAATAGGATGTTGCATATGCTTTA 57.865 29.630 27.13 13.85 42.66 1.85
2380 6008 6.037172 ACATGTCAGTTAGAAAGAACACACAC 59.963 38.462 0.00 0.00 30.39 3.82
2512 6145 2.789917 GAGCACCATCGCAAGCTG 59.210 61.111 0.00 0.00 37.48 4.24
2513 6146 2.816958 CGAGCACCATCGCAAGCT 60.817 61.111 0.00 0.00 40.60 3.74
2514 6147 2.815211 TCGAGCACCATCGCAAGC 60.815 61.111 0.00 0.00 42.43 4.01
2515 6148 2.792290 CGTCGAGCACCATCGCAAG 61.792 63.158 0.00 0.00 42.43 4.01
2516 6149 2.809174 CGTCGAGCACCATCGCAA 60.809 61.111 0.00 0.00 42.43 4.85
2739 7308 4.483243 GGGAAGGATGGCGCCGAA 62.483 66.667 23.90 5.15 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.