AutoCloner

Multiple sequence alignment - TraesCS6A01G275700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G275700	chr6A	100.000	2357	0	0	1	2357	502339292	502341648	0.000000e+00	4353
1	TraesCS6A01G275700	chr6A	97.713	1312	27	1	73	1381	532870195	532871506	0.000000e+00	2254
2	TraesCS6A01G275700	chr6A	93.162	117	6	2	1403	1518	358961526	358961641	1.120000e-38	171
3	TraesCS6A01G275700	chr6A	93.103	116	7	1	1403	1518	101407124	101407010	4.030000e-38	169
4	TraesCS6A01G275700	chr3D	98.555	1384	17	1	1	1381	69660429	69661812	0.000000e+00	2442
5	TraesCS6A01G275700	chr3D	89.818	825	77	4	1533	2357	588849827	588849010	0.000000e+00	1051
6	TraesCS6A01G275700	chr3A	97.688	1384	28	2	1	1381	681100867	681099485	0.000000e+00	2375
7	TraesCS6A01G275700	chr3A	96.498	828	29	0	1530	2357	739833079	739833906	0.000000e+00	1369
8	TraesCS6A01G275700	chr7B	97.542	1383	30	2	1	1380	84527265	84528646	0.000000e+00	2362
9	TraesCS6A01G275700	chr2B	97.704	1350	26	2	40	1384	717931261	717929912	0.000000e+00	2316
10	TraesCS6A01G275700	chr2B	81.404	812	143	8	1543	2351	769925277	769926083	0.000000e+00	656
11	TraesCS6A01G275700	chr4A	96.467	1387	46	1	1	1384	107232284	107230898	0.000000e+00	2287
12	TraesCS6A01G275700	chr2A	96.248	1386	40	6	1	1382	148651647	148653024	0.000000e+00	2261
13	TraesCS6A01G275700	chr2A	82.020	812	142	4	1545	2354	691406633	691405824	0.000000e+00	688
14	TraesCS6A01G275700	chr2A	74.409	508	112	16	1543	2041	719681360	719680862	3.970000e-48	202
15	TraesCS6A01G275700	chr2A	93.162	117	6	2	1403	1518	162289971	162289856	1.120000e-38	171
16	TraesCS6A01G275700	chr6B	96.026	1384	52	1	1	1381	695056653	695058036	0.000000e+00	2248
17	TraesCS6A01G275700	chr5B	95.520	1384	58	2	1	1381	633276927	633278309	0.000000e+00	2209
18	TraesCS6A01G275700	chr1B	92.364	825	61	1	1533	2357	442309465	442308643	0.000000e+00	1173
19	TraesCS6A01G275700	chr5D	80.024	836	129	20	1543	2351	522144854	522145678	3.380000e-163	584
20	TraesCS6A01G275700	chr5A	74.940	838	181	26	1528	2351	9597144	9597966	8.010000e-95	357
21	TraesCS6A01G275700	chr1A	74.787	821	187	16	1543	2354	320756633	320757442	3.730000e-93	351
22	TraesCS6A01G275700	chr1A	94.068	118	5	2	1402	1518	499753476	499753360	6.690000e-41	178
23	TraesCS6A01G275700	chr7A	73.723	822	196	16	1543	2354	13664092	13664903	1.060000e-78	303
24	TraesCS6A01G275700	chr6D	94.828	116	5	1	1404	1518	452070688	452070803	1.860000e-41	180
25	TraesCS6A01G275700	chr6D	94.828	116	5	1	1404	1518	462398386	462398501	1.860000e-41	180
26	TraesCS6A01G275700	chr1D	94.017	117	6	1	1403	1518	176361511	176361395	2.410000e-40	176
27	TraesCS6A01G275700	chr1D	93.966	116	6	1	1404	1518	356881955	356881840	8.660000e-40	174
28	TraesCS6A01G275700	chr3B	93.966	116	5	2	1404	1518	781489921	781489807	8.660000e-40	174
29	TraesCS6A01G275700	chr2D	79.907	214	40	3	2033	2244	629840157	629839945	1.130000e-33	154

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G275700	chr6A	502339292	502341648	2356	False	4353	4353	100.000	1	2357	1	chr6A.!!$F2	2356
1	TraesCS6A01G275700	chr6A	532870195	532871506	1311	False	2254	2254	97.713	73	1381	1	chr6A.!!$F3	1308
2	TraesCS6A01G275700	chr3D	69660429	69661812	1383	False	2442	2442	98.555	1	1381	1	chr3D.!!$F1	1380
3	TraesCS6A01G275700	chr3D	588849010	588849827	817	True	1051	1051	89.818	1533	2357	1	chr3D.!!$R1	824
4	TraesCS6A01G275700	chr3A	681099485	681100867	1382	True	2375	2375	97.688	1	1381	1	chr3A.!!$R1	1380
5	TraesCS6A01G275700	chr3A	739833079	739833906	827	False	1369	1369	96.498	1530	2357	1	chr3A.!!$F1	827
6	TraesCS6A01G275700	chr7B	84527265	84528646	1381	False	2362	2362	97.542	1	1380	1	chr7B.!!$F1	1379
7	TraesCS6A01G275700	chr2B	717929912	717931261	1349	True	2316	2316	97.704	40	1384	1	chr2B.!!$R1	1344
8	TraesCS6A01G275700	chr2B	769925277	769926083	806	False	656	656	81.404	1543	2351	1	chr2B.!!$F1	808
9	TraesCS6A01G275700	chr4A	107230898	107232284	1386	True	2287	2287	96.467	1	1384	1	chr4A.!!$R1	1383
10	TraesCS6A01G275700	chr2A	148651647	148653024	1377	False	2261	2261	96.248	1	1382	1	chr2A.!!$F1	1381
11	TraesCS6A01G275700	chr2A	691405824	691406633	809	True	688	688	82.020	1545	2354	1	chr2A.!!$R2	809
12	TraesCS6A01G275700	chr6B	695056653	695058036	1383	False	2248	2248	96.026	1	1381	1	chr6B.!!$F1	1380
13	TraesCS6A01G275700	chr5B	633276927	633278309	1382	False	2209	2209	95.520	1	1381	1	chr5B.!!$F1	1380
14	TraesCS6A01G275700	chr1B	442308643	442309465	822	True	1173	1173	92.364	1533	2357	1	chr1B.!!$R1	824
15	TraesCS6A01G275700	chr5D	522144854	522145678	824	False	584	584	80.024	1543	2351	1	chr5D.!!$F1	808
16	TraesCS6A01G275700	chr5A	9597144	9597966	822	False	357	357	74.940	1528	2351	1	chr5A.!!$F1	823
17	TraesCS6A01G275700	chr1A	320756633	320757442	809	False	351	351	74.787	1543	2354	1	chr1A.!!$F1	811
18	TraesCS6A01G275700	chr7A	13664092	13664903	811	False	303	303	73.723	1543	2354	1	chr7A.!!$F1	811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
336	337	3.699411	TGGGAATTTCAATTTGGGCAG	57.301	42.857	0.0	0.0	0.0	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1388	1395	0.106918	AAAAAGCACCTCGGTGGACA	60.107	50.0	17.16	0.0	45.49	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
336	337	3.699411	TGGGAATTTCAATTTGGGCAG	57.301	42.857	0.00	0.00	0.00	4.85
434	435	9.546428	AGCAAAGATAAAAATATTTATGTGGCC	57.454	29.630	0.01	0.00	40.87	5.36
1153	1157	3.259374	CCAAGGCTACTCTTCTTCAGTCA	59.741	47.826	0.00	0.00	0.00	3.41
1394	1401	3.105187	AAAAAGGGGTCGTGTCCAC	57.895	52.632	0.00	0.00	0.00	4.02
1395	1402	0.466739	AAAAAGGGGTCGTGTCCACC	60.467	55.000	0.00	0.00	0.00	4.61
1396	1403	2.669777	AAAAGGGGTCGTGTCCACCG	62.670	60.000	0.00	0.00	34.33	4.94
1397	1404	4.608774	AGGGGTCGTGTCCACCGA	62.609	66.667	0.00	0.00	34.33	4.69
1398	1405	4.065281	GGGGTCGTGTCCACCGAG	62.065	72.222	0.00	0.00	34.56	4.63
1399	1406	4.065281	GGGTCGTGTCCACCGAGG	62.065	72.222	0.00	0.00	34.56	4.63
1400	1407	3.300765	GGTCGTGTCCACCGAGGT	61.301	66.667	0.00	0.00	39.02	3.85
1401	1408	2.049433	GTCGTGTCCACCGAGGTG	60.049	66.667	14.99	14.99	45.02	4.00
1402	1409	3.986006	TCGTGTCCACCGAGGTGC	61.986	66.667	16.39	4.98	44.16	5.01
1403	1410	3.991051	CGTGTCCACCGAGGTGCT	61.991	66.667	16.39	0.00	44.16	4.40
1404	1411	2.426023	GTGTCCACCGAGGTGCTT	59.574	61.111	16.39	0.00	44.16	3.91
1405	1412	1.227853	GTGTCCACCGAGGTGCTTT	60.228	57.895	16.39	0.00	44.16	3.51
1406	1413	0.818040	GTGTCCACCGAGGTGCTTTT	60.818	55.000	16.39	0.00	44.16	2.27
1407	1414	0.106918	TGTCCACCGAGGTGCTTTTT	60.107	50.000	16.39	0.00	44.16	1.94
1453	1460	8.729529	ATTCATTAGAGATAACACGTACATCG	57.270	34.615	0.00	0.00	46.00	3.84
1464	1471	2.074547	CGTACATCGTTTGTGAGGGT	57.925	50.000	0.00	0.00	39.48	4.34
1465	1472	1.990563	CGTACATCGTTTGTGAGGGTC	59.009	52.381	0.00	0.00	39.48	4.46
1466	1473	2.608506	CGTACATCGTTTGTGAGGGTCA	60.609	50.000	0.00	0.00	39.48	4.02
1467	1474	2.859165	ACATCGTTTGTGAGGGTCAT	57.141	45.000	0.00	0.00	37.11	3.06
1468	1475	3.140325	ACATCGTTTGTGAGGGTCATT	57.860	42.857	0.00	0.00	37.11	2.57
1469	1476	4.280436	ACATCGTTTGTGAGGGTCATTA	57.720	40.909	0.00	0.00	37.11	1.90
1470	1477	4.000988	ACATCGTTTGTGAGGGTCATTAC	58.999	43.478	0.00	0.00	37.11	1.89
1471	1478	3.755112	TCGTTTGTGAGGGTCATTACA	57.245	42.857	0.00	0.00	0.00	2.41
1472	1479	4.074627	TCGTTTGTGAGGGTCATTACAA	57.925	40.909	0.00	0.00	0.00	2.41
1473	1480	4.647611	TCGTTTGTGAGGGTCATTACAAT	58.352	39.130	0.00	0.00	33.56	2.71
1474	1481	5.067273	TCGTTTGTGAGGGTCATTACAATT	58.933	37.500	0.00	0.00	33.56	2.32
1475	1482	5.533154	TCGTTTGTGAGGGTCATTACAATTT	59.467	36.000	0.00	0.00	33.56	1.82
1476	1483	5.856455	CGTTTGTGAGGGTCATTACAATTTC	59.144	40.000	0.00	0.00	33.56	2.17
1477	1484	6.514212	CGTTTGTGAGGGTCATTACAATTTCA	60.514	38.462	0.00	0.00	33.56	2.69
1478	1485	7.378181	GTTTGTGAGGGTCATTACAATTTCAT	58.622	34.615	0.00	0.00	33.56	2.57
1479	1486	7.537596	TTGTGAGGGTCATTACAATTTCATT	57.462	32.000	0.00	0.00	0.00	2.57
1480	1487	7.537596	TGTGAGGGTCATTACAATTTCATTT	57.462	32.000	0.00	0.00	0.00	2.32
1481	1488	8.642935	TGTGAGGGTCATTACAATTTCATTTA	57.357	30.769	0.00	0.00	0.00	1.40
1482	1489	8.519526	TGTGAGGGTCATTACAATTTCATTTAC	58.480	33.333	0.00	0.00	0.00	2.01
1483	1490	8.519526	GTGAGGGTCATTACAATTTCATTTACA	58.480	33.333	0.00	0.00	0.00	2.41
1484	1491	8.739039	TGAGGGTCATTACAATTTCATTTACAG	58.261	33.333	0.00	0.00	0.00	2.74
1485	1492	8.066612	AGGGTCATTACAATTTCATTTACAGG	57.933	34.615	0.00	0.00	0.00	4.00
1486	1493	7.673926	AGGGTCATTACAATTTCATTTACAGGT	59.326	33.333	0.00	0.00	0.00	4.00
1487	1494	8.311109	GGGTCATTACAATTTCATTTACAGGTT	58.689	33.333	0.00	0.00	0.00	3.50
1488	1495	9.353999	GGTCATTACAATTTCATTTACAGGTTC	57.646	33.333	0.00	0.00	0.00	3.62
1489	1496	9.353999	GTCATTACAATTTCATTTACAGGTTCC	57.646	33.333	0.00	0.00	0.00	3.62
1490	1497	9.308000	TCATTACAATTTCATTTACAGGTTCCT	57.692	29.630	0.00	0.00	0.00	3.36
1491	1498	9.573133	CATTACAATTTCATTTACAGGTTCCTC	57.427	33.333	0.00	0.00	0.00	3.71
1492	1499	8.698973	TTACAATTTCATTTACAGGTTCCTCA	57.301	30.769	0.00	0.00	0.00	3.86
1493	1500	7.595819	ACAATTTCATTTACAGGTTCCTCAA	57.404	32.000	0.00	0.00	0.00	3.02
1494	1501	8.017418	ACAATTTCATTTACAGGTTCCTCAAA	57.983	30.769	0.00	0.00	0.00	2.69
1495	1502	7.926018	ACAATTTCATTTACAGGTTCCTCAAAC	59.074	33.333	0.00	0.00	37.12	2.93
1508	1515	6.331369	GTTCCTCAAACCAATCAGAAATCA	57.669	37.500	0.00	0.00	31.20	2.57
1509	1516	6.748132	GTTCCTCAAACCAATCAGAAATCAA	58.252	36.000	0.00	0.00	31.20	2.57
1510	1517	6.331369	TCCTCAAACCAATCAGAAATCAAC	57.669	37.500	0.00	0.00	0.00	3.18
1511	1518	5.832595	TCCTCAAACCAATCAGAAATCAACA	59.167	36.000	0.00	0.00	0.00	3.33
1512	1519	6.494491	TCCTCAAACCAATCAGAAATCAACAT	59.506	34.615	0.00	0.00	0.00	2.71
1513	1520	7.669304	TCCTCAAACCAATCAGAAATCAACATA	59.331	33.333	0.00	0.00	0.00	2.29
1514	1521	8.306038	CCTCAAACCAATCAGAAATCAACATAA	58.694	33.333	0.00	0.00	0.00	1.90
1515	1522	9.695526	CTCAAACCAATCAGAAATCAACATAAA	57.304	29.630	0.00	0.00	0.00	1.40
1531	1538	7.613585	TCAACATAAATCAAAACCATGCTGAT	58.386	30.769	0.00	0.00	0.00	2.90
1554	1561	2.342279	CAACGGGCGACTTCCTCA	59.658	61.111	0.00	0.00	0.00	3.86
1594	1601	2.673775	TGGCTGATCCCTGAAAACAA	57.326	45.000	0.00	0.00	0.00	2.83
1696	1703	0.955178	CATCTCAGAGTATCCGCCGT	59.045	55.000	0.00	0.00	33.66	5.68
2046	2075	4.827692	TCGTATCCAGTGTTGTGCTATTT	58.172	39.130	0.00	0.00	0.00	1.40
2101	2130	0.875059	GCTGAAAAGGAAGTCCACCG	59.125	55.000	0.00	0.00	38.89	4.94
2233	2263	1.606531	GCACCAAGATCCAGAGGCT	59.393	57.895	0.00	0.00	0.00	4.58

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
307	308	7.712205	CCCAAATTGAAATTCCCATTCTGTATC	59.288	37.037	0.00	0.00	0.00	2.24
434	435	2.635229	AATAGCACTCTGGAGCGCGG	62.635	60.000	8.83	0.00	41.09	6.46
629	630	0.472044	TGCCAACACAAGCTCACCTA	59.528	50.000	0.00	0.00	0.00	3.08
1228	1235	5.836821	AGTTCATGAGCTACTCGATTACA	57.163	39.130	10.73	0.00	32.35	2.41
1381	1388	4.065281	CTCGGTGGACACGACCCC	62.065	72.222	0.00	0.00	36.25	4.95
1385	1392	3.986006	GCACCTCGGTGGACACGA	61.986	66.667	17.16	0.00	45.49	4.35
1386	1393	2.989055	AAAGCACCTCGGTGGACACG	62.989	60.000	17.16	0.00	45.49	4.49
1387	1394	0.818040	AAAAGCACCTCGGTGGACAC	60.818	55.000	17.16	1.22	45.49	3.67
1388	1395	0.106918	AAAAAGCACCTCGGTGGACA	60.107	50.000	17.16	0.00	45.49	4.02
1389	1396	2.715536	AAAAAGCACCTCGGTGGAC	58.284	52.632	17.16	2.25	45.49	4.02
1427	1434	9.821662	CGATGTACGTGTTATCTCTAATGAATA	57.178	33.333	0.00	0.00	37.22	1.75
1428	1435	8.729529	CGATGTACGTGTTATCTCTAATGAAT	57.270	34.615	0.00	0.00	37.22	2.57
1445	1452	1.990563	GACCCTCACAAACGATGTACG	59.009	52.381	0.00	0.00	41.46	3.67
1446	1453	3.034721	TGACCCTCACAAACGATGTAC	57.965	47.619	0.00	0.00	41.46	2.90
1447	1454	3.973206	ATGACCCTCACAAACGATGTA	57.027	42.857	0.00	0.00	41.46	2.29
1448	1455	2.859165	ATGACCCTCACAAACGATGT	57.141	45.000	0.00	0.00	45.34	3.06
1449	1456	4.000325	TGTAATGACCCTCACAAACGATG	59.000	43.478	0.00	0.00	0.00	3.84
1450	1457	4.280436	TGTAATGACCCTCACAAACGAT	57.720	40.909	0.00	0.00	0.00	3.73
1451	1458	3.755112	TGTAATGACCCTCACAAACGA	57.245	42.857	0.00	0.00	0.00	3.85
1452	1459	5.371115	AATTGTAATGACCCTCACAAACG	57.629	39.130	0.00	0.00	34.79	3.60
1453	1460	6.744112	TGAAATTGTAATGACCCTCACAAAC	58.256	36.000	0.00	0.00	34.79	2.93
1454	1461	6.968263	TGAAATTGTAATGACCCTCACAAA	57.032	33.333	0.00	0.00	34.79	2.83
1455	1462	7.537596	AATGAAATTGTAATGACCCTCACAA	57.462	32.000	0.00	0.00	33.44	3.33
1456	1463	7.537596	AAATGAAATTGTAATGACCCTCACA	57.462	32.000	0.00	0.00	36.10	3.58
1457	1464	8.519526	TGTAAATGAAATTGTAATGACCCTCAC	58.480	33.333	0.00	0.00	36.10	3.51
1458	1465	8.642935	TGTAAATGAAATTGTAATGACCCTCA	57.357	30.769	0.00	0.00	36.10	3.86
1459	1466	8.190784	CCTGTAAATGAAATTGTAATGACCCTC	58.809	37.037	0.00	0.00	36.10	4.30
1460	1467	7.673926	ACCTGTAAATGAAATTGTAATGACCCT	59.326	33.333	0.00	0.00	36.10	4.34
1461	1468	7.836842	ACCTGTAAATGAAATTGTAATGACCC	58.163	34.615	0.00	0.00	36.10	4.46
1462	1469	9.353999	GAACCTGTAAATGAAATTGTAATGACC	57.646	33.333	0.00	0.00	36.10	4.02
1463	1470	9.353999	GGAACCTGTAAATGAAATTGTAATGAC	57.646	33.333	0.00	0.00	36.10	3.06
1464	1471	9.308000	AGGAACCTGTAAATGAAATTGTAATGA	57.692	29.630	0.00	0.00	36.10	2.57
1465	1472	9.573133	GAGGAACCTGTAAATGAAATTGTAATG	57.427	33.333	0.00	0.00	36.10	1.90
1466	1473	9.308000	TGAGGAACCTGTAAATGAAATTGTAAT	57.692	29.630	0.00	0.00	36.10	1.89
1467	1474	8.698973	TGAGGAACCTGTAAATGAAATTGTAA	57.301	30.769	0.00	0.00	36.10	2.41
1468	1475	8.698973	TTGAGGAACCTGTAAATGAAATTGTA	57.301	30.769	0.00	0.00	36.10	2.41
1469	1476	7.595819	TTGAGGAACCTGTAAATGAAATTGT	57.404	32.000	0.00	0.00	36.10	2.71
1470	1477	8.298030	GTTTGAGGAACCTGTAAATGAAATTG	57.702	34.615	0.00	0.00	31.83	2.32
1485	1492	6.331369	TGATTTCTGATTGGTTTGAGGAAC	57.669	37.500	0.00	0.00	37.53	3.62
1486	1493	6.323482	TGTTGATTTCTGATTGGTTTGAGGAA	59.677	34.615	0.00	0.00	0.00	3.36
1487	1494	5.832595	TGTTGATTTCTGATTGGTTTGAGGA	59.167	36.000	0.00	0.00	0.00	3.71
1488	1495	6.088016	TGTTGATTTCTGATTGGTTTGAGG	57.912	37.500	0.00	0.00	0.00	3.86
1489	1496	9.695526	TTTATGTTGATTTCTGATTGGTTTGAG	57.304	29.630	0.00	0.00	0.00	3.02
1501	1508	8.938906	GCATGGTTTTGATTTATGTTGATTTCT	58.061	29.630	0.00	0.00	0.00	2.52
1502	1509	8.938906	AGCATGGTTTTGATTTATGTTGATTTC	58.061	29.630	0.00	0.00	0.00	2.17
1503	1510	8.723311	CAGCATGGTTTTGATTTATGTTGATTT	58.277	29.630	0.00	0.00	33.55	2.17
1504	1511	8.095792	TCAGCATGGTTTTGATTTATGTTGATT	58.904	29.630	0.00	0.00	35.19	2.57
1505	1512	7.613585	TCAGCATGGTTTTGATTTATGTTGAT	58.386	30.769	0.00	0.00	35.19	2.57
1506	1513	6.990798	TCAGCATGGTTTTGATTTATGTTGA	58.009	32.000	0.00	0.00	36.89	3.18
1507	1514	7.837202	ATCAGCATGGTTTTGATTTATGTTG	57.163	32.000	0.00	0.00	36.16	3.33
1508	1515	7.981225	GGTATCAGCATGGTTTTGATTTATGTT	59.019	33.333	0.00	0.00	36.16	2.71
1509	1516	7.342799	AGGTATCAGCATGGTTTTGATTTATGT	59.657	33.333	0.00	0.00	36.16	2.29
1510	1517	7.650504	CAGGTATCAGCATGGTTTTGATTTATG	59.349	37.037	0.00	0.00	36.16	1.90
1511	1518	7.685155	GCAGGTATCAGCATGGTTTTGATTTAT	60.685	37.037	0.00	0.00	36.16	1.40
1512	1519	6.405731	GCAGGTATCAGCATGGTTTTGATTTA	60.406	38.462	0.00	0.00	36.16	1.40
1513	1520	5.625197	GCAGGTATCAGCATGGTTTTGATTT	60.625	40.000	0.00	0.00	36.16	2.17
1514	1521	4.142093	GCAGGTATCAGCATGGTTTTGATT	60.142	41.667	0.00	0.00	36.16	2.57
1515	1522	3.382546	GCAGGTATCAGCATGGTTTTGAT	59.617	43.478	0.00	0.00	36.16	2.57
1516	1523	2.754552	GCAGGTATCAGCATGGTTTTGA	59.245	45.455	0.00	0.00	36.16	2.69
1517	1524	2.492881	TGCAGGTATCAGCATGGTTTTG	59.507	45.455	0.00	0.00	35.51	2.44
1518	1525	2.806434	TGCAGGTATCAGCATGGTTTT	58.194	42.857	0.00	0.00	35.51	2.43
1519	1526	2.493278	GTTGCAGGTATCAGCATGGTTT	59.507	45.455	0.00	0.00	40.94	3.27
1520	1527	2.094675	GTTGCAGGTATCAGCATGGTT	58.905	47.619	0.00	0.00	40.94	3.67
1521	1528	1.755179	GTTGCAGGTATCAGCATGGT	58.245	50.000	0.00	0.00	40.94	3.55
1522	1529	0.659427	CGTTGCAGGTATCAGCATGG	59.341	55.000	0.00	0.00	40.94	3.66
1523	1530	0.659427	CCGTTGCAGGTATCAGCATG	59.341	55.000	0.00	0.00	40.94	4.06
1524	1531	0.464373	CCCGTTGCAGGTATCAGCAT	60.464	55.000	0.00	0.00	40.94	3.79
1525	1532	1.078497	CCCGTTGCAGGTATCAGCA	60.078	57.895	0.00	0.00	39.32	4.41
1526	1533	2.472909	GCCCGTTGCAGGTATCAGC	61.473	63.158	0.00	0.00	40.77	4.26
1531	1538	2.775032	GAAGTCGCCCGTTGCAGGTA	62.775	60.000	0.00	0.00	41.33	3.08
1554	1561	1.074084	TCGGCGATTCCTAGAGGAGAT	59.926	52.381	4.99	0.00	46.36	2.75
1594	1601	4.096382	CGGGATTGATTTTCGTGGATTCTT	59.904	41.667	0.00	0.00	0.00	2.52
1696	1703	4.307432	GTTCTTCAAGTTCTCGATGGTCA	58.693	43.478	0.00	0.00	0.00	4.02
2101	2130	1.911702	CTCCCCGAGACCCTTTTCCC	61.912	65.000	0.00	0.00	0.00	3.97
2233	2263	0.332632	CTTGGCAATCTCCTTCCCCA	59.667	55.000	0.00	0.00	0.00	4.96

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.