Multiple sequence alignment - TraesCS6A01G275200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G275200 chr6A 100.000 4848 0 0 1 4848 501806318 501801471 0.000000e+00 8953.0
1 TraesCS6A01G275200 chr6A 99.107 112 1 0 4250 4361 501802013 501801902 8.230000e-48 202.0
2 TraesCS6A01G275200 chr6A 99.107 112 1 0 4306 4417 501802069 501801958 8.230000e-48 202.0
3 TraesCS6A01G275200 chr6A 86.982 169 22 0 548 716 485383011 485383179 1.780000e-44 191.0
4 TraesCS6A01G275200 chr6A 98.214 56 1 0 4250 4305 501801957 501801902 1.110000e-16 99.0
5 TraesCS6A01G275200 chr6A 98.214 56 1 0 4362 4417 501802069 501802014 1.110000e-16 99.0
6 TraesCS6A01G275200 chr6D 96.511 1605 47 8 1603 3202 360690887 360689287 0.000000e+00 2645.0
7 TraesCS6A01G275200 chr6D 90.852 951 54 13 769 1708 360691808 360690880 0.000000e+00 1243.0
8 TraesCS6A01G275200 chr6D 97.670 515 8 3 3353 3864 360689012 360688499 0.000000e+00 881.0
9 TraesCS6A01G275200 chr6D 93.763 497 16 5 4362 4848 360688145 360687654 0.000000e+00 732.0
10 TraesCS6A01G275200 chr6D 93.351 376 21 2 3933 4304 360688466 360688091 1.970000e-153 553.0
11 TraesCS6A01G275200 chr6D 85.319 361 28 12 1 360 360693332 360692996 2.780000e-92 350.0
12 TraesCS6A01G275200 chr6D 97.927 193 3 1 3201 3392 360689248 360689056 2.800000e-87 333.0
13 TraesCS6A01G275200 chr6B 92.344 1685 85 17 548 2223 542236207 542234558 0.000000e+00 2357.0
14 TraesCS6A01G275200 chr6B 95.158 1136 39 14 2267 3392 542234554 542233425 0.000000e+00 1779.0
15 TraesCS6A01G275200 chr6B 92.708 960 59 10 3353 4308 542233381 542232429 0.000000e+00 1375.0
16 TraesCS6A01G275200 chr6B 90.656 503 26 7 4362 4848 542232487 542231990 0.000000e+00 649.0
17 TraesCS6A01G275200 chr6B 85.434 357 35 6 6 362 542236554 542236215 5.970000e-94 355.0
18 TraesCS6A01G275200 chr7B 89.024 164 17 1 548 710 403488132 403487969 8.230000e-48 202.0
19 TraesCS6A01G275200 chr3D 88.957 163 18 0 548 710 468774472 468774310 8.230000e-48 202.0
20 TraesCS6A01G275200 chr3A 88.889 162 18 0 548 709 308789579 308789740 2.960000e-47 200.0
21 TraesCS6A01G275200 chr7D 88.272 162 19 0 548 709 440202706 440202545 1.380000e-45 195.0
22 TraesCS6A01G275200 chr1B 87.059 170 21 1 378 547 652304848 652304680 1.780000e-44 191.0
23 TraesCS6A01G275200 chr7A 87.273 165 21 0 548 712 235411211 235411375 6.410000e-44 189.0
24 TraesCS6A01G275200 chr1A 86.628 172 21 2 375 546 563612195 563612026 6.410000e-44 189.0
25 TraesCS6A01G275200 chr3B 87.195 164 21 0 548 711 389041972 389042135 2.300000e-43 187.0
26 TraesCS6A01G275200 chr5D 86.047 172 24 0 548 719 63590028 63589857 8.290000e-43 185.0
27 TraesCS6A01G275200 chr5B 87.117 163 21 0 548 710 328549259 328549421 8.290000e-43 185.0
28 TraesCS6A01G275200 chr1D 86.765 136 18 0 374 509 470046917 470046782 8.400000e-33 152.0
29 TraesCS6A01G275200 chr2D 89.773 88 7 2 3017 3102 613102095 613102008 1.430000e-20 111.0
30 TraesCS6A01G275200 chr2B 93.056 72 3 1 3017 3086 748427592 748427521 2.390000e-18 104.0
31 TraesCS6A01G275200 chr2A 88.506 87 8 1 3017 3101 744789584 744789498 2.390000e-18 104.0
32 TraesCS6A01G275200 chr2A 95.556 45 1 1 3106 3149 744789409 744789365 2.420000e-08 71.3
33 TraesCS6A01G275200 chrUn 91.429 70 6 0 369 438 35648752 35648821 3.990000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G275200 chr6A 501801471 501806318 4847 True 8953.000000 8953 100.000000 1 4848 1 chr6A.!!$R1 4847
1 TraesCS6A01G275200 chr6D 360687654 360693332 5678 True 962.428571 2645 93.627571 1 4848 7 chr6D.!!$R1 4847
2 TraesCS6A01G275200 chr6B 542231990 542236554 4564 True 1303.000000 2357 91.260000 6 4848 5 chr6B.!!$R1 4842


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 722 0.036388 CAGCCCCTAAGTCTCGCAAA 60.036 55.000 0.00 0.00 0.00 3.68 F
1299 2294 0.728542 GGTCGTTGGTTTTGACGTGT 59.271 50.000 0.00 0.00 40.03 4.49 F
1571 2566 0.524862 CTGCCTGCGCAAAGAAATCT 59.475 50.000 13.05 0.00 46.66 2.40 F
1603 2598 5.610557 TCTTGTTGGGATCCCATATGTGATA 59.389 40.000 34.21 14.07 46.64 2.15 F
3345 4490 2.805671 CGTTTGTACTTGCCATCACTCA 59.194 45.455 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 2528 2.297033 CAGGCAGGCAAACATAAACAGT 59.703 45.455 0.0 0.0 0.00 3.55 R
2928 4026 2.441750 AGTAAACCAGGAAGGCACAAGA 59.558 45.455 0.0 0.0 43.14 3.02 R
3102 4204 3.609853 TGTTAGTTCACTGGATCATGCC 58.390 45.455 0.0 0.0 0.00 4.40 R
3475 4789 6.256757 GTCAGGATCTATAACAGAAGTTGCAC 59.743 42.308 0.0 0.0 38.69 4.57 R
4733 6063 0.110486 ATGCCACCCCGCTTATTAGG 59.890 55.000 0.0 0.0 0.00 2.69 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 113 7.634526 AAAGGTAAAACCCCAAATAAATCCA 57.365 32.000 0.00 0.00 39.75 3.41
163 165 9.855021 AAAACGGGAAGAAAGAACAATAATATG 57.145 29.630 0.00 0.00 0.00 1.78
164 166 8.801882 AACGGGAAGAAAGAACAATAATATGA 57.198 30.769 0.00 0.00 0.00 2.15
165 167 8.801882 ACGGGAAGAAAGAACAATAATATGAA 57.198 30.769 0.00 0.00 0.00 2.57
166 168 9.408648 ACGGGAAGAAAGAACAATAATATGAAT 57.591 29.630 0.00 0.00 0.00 2.57
167 169 9.669353 CGGGAAGAAAGAACAATAATATGAATG 57.331 33.333 0.00 0.00 0.00 2.67
279 281 1.594833 CCTAGTAGCACCACGCCAA 59.405 57.895 0.00 0.00 44.04 4.52
284 286 0.882927 GTAGCACCACGCCAAAGACA 60.883 55.000 0.00 0.00 44.04 3.41
324 326 0.325484 TTGGATCATTGCCCCCAAGG 60.325 55.000 0.00 0.00 34.10 3.61
362 364 1.443802 GTTGTTGACCAGCTCTAGGC 58.556 55.000 0.00 0.00 42.19 3.93
363 365 0.324943 TTGTTGACCAGCTCTAGGCC 59.675 55.000 0.00 0.00 43.05 5.19
364 366 0.545309 TGTTGACCAGCTCTAGGCCT 60.545 55.000 11.78 11.78 43.05 5.19
365 367 0.615850 GTTGACCAGCTCTAGGCCTT 59.384 55.000 12.58 0.00 43.05 4.35
366 368 1.831736 GTTGACCAGCTCTAGGCCTTA 59.168 52.381 12.58 0.00 43.05 2.69
367 369 2.436173 GTTGACCAGCTCTAGGCCTTAT 59.564 50.000 12.58 0.00 43.05 1.73
370 372 4.295201 TGACCAGCTCTAGGCCTTATTTA 58.705 43.478 12.58 0.00 43.05 1.40
371 373 4.907875 TGACCAGCTCTAGGCCTTATTTAT 59.092 41.667 12.58 0.00 43.05 1.40
372 374 5.221722 TGACCAGCTCTAGGCCTTATTTATG 60.222 44.000 12.58 3.39 43.05 1.90
373 375 4.006319 CCAGCTCTAGGCCTTATTTATGC 58.994 47.826 12.58 6.52 43.05 3.14
374 376 4.263243 CCAGCTCTAGGCCTTATTTATGCT 60.263 45.833 12.58 8.88 43.05 3.79
375 377 5.046304 CCAGCTCTAGGCCTTATTTATGCTA 60.046 44.000 12.58 0.00 43.05 3.49
376 378 6.352565 CCAGCTCTAGGCCTTATTTATGCTAT 60.353 42.308 12.58 0.00 43.05 2.97
377 379 6.538021 CAGCTCTAGGCCTTATTTATGCTATG 59.462 42.308 12.58 0.00 43.05 2.23
378 380 6.214412 AGCTCTAGGCCTTATTTATGCTATGT 59.786 38.462 12.58 0.00 43.05 2.29
379 381 7.400339 AGCTCTAGGCCTTATTTATGCTATGTA 59.600 37.037 12.58 0.00 43.05 2.29
380 382 8.041323 GCTCTAGGCCTTATTTATGCTATGTAA 58.959 37.037 12.58 0.00 34.27 2.41
385 387 8.730680 AGGCCTTATTTATGCTATGTAATTTCG 58.269 33.333 0.00 0.00 0.00 3.46
386 388 8.512138 GGCCTTATTTATGCTATGTAATTTCGT 58.488 33.333 0.00 0.00 0.00 3.85
387 389 9.543018 GCCTTATTTATGCTATGTAATTTCGTC 57.457 33.333 0.00 0.00 0.00 4.20
392 394 8.669946 TTTATGCTATGTAATTTCGTCCATGA 57.330 30.769 0.00 0.00 0.00 3.07
393 395 8.669946 TTATGCTATGTAATTTCGTCCATGAA 57.330 30.769 0.00 0.00 0.00 2.57
394 396 6.993786 TGCTATGTAATTTCGTCCATGAAA 57.006 33.333 0.00 0.00 41.69 2.69
395 397 7.384439 TGCTATGTAATTTCGTCCATGAAAA 57.616 32.000 0.00 0.00 40.90 2.29
396 398 7.821652 TGCTATGTAATTTCGTCCATGAAAAA 58.178 30.769 0.00 0.00 40.90 1.94
417 419 7.838771 AAAAAGATGCTGAAATTATGAAGCC 57.161 32.000 0.00 0.00 34.70 4.35
418 420 5.526506 AAGATGCTGAAATTATGAAGCCC 57.473 39.130 0.00 0.00 34.70 5.19
419 421 4.539726 AGATGCTGAAATTATGAAGCCCA 58.460 39.130 0.00 0.00 34.70 5.36
420 422 5.145564 AGATGCTGAAATTATGAAGCCCAT 58.854 37.500 0.00 0.00 39.25 4.00
421 423 6.309357 AGATGCTGAAATTATGAAGCCCATA 58.691 36.000 0.00 0.00 36.71 2.74
432 434 5.690464 ATGAAGCCCATAATCTAGCTAGG 57.310 43.478 20.58 4.76 34.49 3.02
433 435 4.493618 TGAAGCCCATAATCTAGCTAGGT 58.506 43.478 20.58 11.30 34.49 3.08
434 436 4.907875 TGAAGCCCATAATCTAGCTAGGTT 59.092 41.667 22.44 22.44 34.49 3.50
435 437 5.369699 TGAAGCCCATAATCTAGCTAGGTTT 59.630 40.000 23.86 17.30 34.49 3.27
436 438 5.234466 AGCCCATAATCTAGCTAGGTTTG 57.766 43.478 23.86 19.09 32.73 2.93
437 439 3.753797 GCCCATAATCTAGCTAGGTTTGC 59.246 47.826 23.86 16.73 0.00 3.68
438 440 4.505742 GCCCATAATCTAGCTAGGTTTGCT 60.506 45.833 23.86 7.36 43.79 3.91
439 441 5.280011 GCCCATAATCTAGCTAGGTTTGCTA 60.280 44.000 23.86 6.98 41.46 3.49
440 442 6.166982 CCCATAATCTAGCTAGGTTTGCTAC 58.833 44.000 23.86 0.00 41.46 3.58
441 443 6.014156 CCCATAATCTAGCTAGGTTTGCTACT 60.014 42.308 23.86 0.86 41.46 2.57
442 444 7.178628 CCCATAATCTAGCTAGGTTTGCTACTA 59.821 40.741 23.86 5.12 41.46 1.82
443 445 8.030106 CCATAATCTAGCTAGGTTTGCTACTAC 58.970 40.741 23.86 0.00 41.46 2.73
444 446 8.798402 CATAATCTAGCTAGGTTTGCTACTACT 58.202 37.037 23.86 0.00 41.46 2.57
445 447 6.887626 ATCTAGCTAGGTTTGCTACTACTC 57.112 41.667 20.58 0.00 41.46 2.59
446 448 6.003859 TCTAGCTAGGTTTGCTACTACTCT 57.996 41.667 20.58 0.00 41.46 3.24
447 449 7.134362 TCTAGCTAGGTTTGCTACTACTCTA 57.866 40.000 20.58 0.00 41.46 2.43
448 450 7.571919 TCTAGCTAGGTTTGCTACTACTCTAA 58.428 38.462 20.58 0.00 41.46 2.10
449 451 8.051535 TCTAGCTAGGTTTGCTACTACTCTAAA 58.948 37.037 20.58 0.00 41.46 1.85
450 452 7.663043 AGCTAGGTTTGCTACTACTCTAAAT 57.337 36.000 0.00 0.00 39.21 1.40
451 453 7.718525 AGCTAGGTTTGCTACTACTCTAAATC 58.281 38.462 0.00 0.00 39.21 2.17
452 454 7.342284 AGCTAGGTTTGCTACTACTCTAAATCA 59.658 37.037 0.00 0.00 39.21 2.57
453 455 7.650104 GCTAGGTTTGCTACTACTCTAAATCAG 59.350 40.741 0.00 0.00 0.00 2.90
454 456 6.879400 AGGTTTGCTACTACTCTAAATCAGG 58.121 40.000 0.00 0.00 0.00 3.86
455 457 6.049790 GGTTTGCTACTACTCTAAATCAGGG 58.950 44.000 0.00 0.00 0.00 4.45
456 458 5.871396 TTGCTACTACTCTAAATCAGGGG 57.129 43.478 0.00 0.00 0.00 4.79
457 459 5.138758 TGCTACTACTCTAAATCAGGGGA 57.861 43.478 0.00 0.00 0.00 4.81
458 460 5.141182 TGCTACTACTCTAAATCAGGGGAG 58.859 45.833 0.00 0.00 42.25 4.30
459 461 5.103643 TGCTACTACTCTAAATCAGGGGAGA 60.104 44.000 0.00 0.00 38.06 3.71
460 462 5.242171 GCTACTACTCTAAATCAGGGGAGAC 59.758 48.000 0.00 0.00 38.06 3.36
461 463 5.208294 ACTACTCTAAATCAGGGGAGACA 57.792 43.478 0.00 0.00 38.06 3.41
462 464 4.957327 ACTACTCTAAATCAGGGGAGACAC 59.043 45.833 0.00 0.00 38.06 3.67
463 465 3.791320 ACTCTAAATCAGGGGAGACACA 58.209 45.455 0.00 0.00 34.58 3.72
464 466 3.515901 ACTCTAAATCAGGGGAGACACAC 59.484 47.826 0.00 0.00 34.58 3.82
465 467 3.515502 CTCTAAATCAGGGGAGACACACA 59.484 47.826 0.00 0.00 34.58 3.72
466 468 4.104086 TCTAAATCAGGGGAGACACACAT 58.896 43.478 0.00 0.00 34.58 3.21
467 469 2.795231 AATCAGGGGAGACACACATG 57.205 50.000 0.00 0.00 34.58 3.21
468 470 0.914644 ATCAGGGGAGACACACATGG 59.085 55.000 0.00 0.00 34.20 3.66
469 471 1.377725 CAGGGGAGACACACATGGC 60.378 63.158 0.00 0.00 34.58 4.40
471 473 1.136329 AGGGGAGACACACATGGCTT 61.136 55.000 0.00 0.00 44.22 4.35
472 474 0.962356 GGGGAGACACACATGGCTTG 60.962 60.000 0.00 0.00 44.22 4.01
473 475 0.962356 GGGAGACACACATGGCTTGG 60.962 60.000 5.31 0.00 44.22 3.61
474 476 0.250901 GGAGACACACATGGCTTGGT 60.251 55.000 5.31 0.00 44.22 3.67
475 477 1.160137 GAGACACACATGGCTTGGTC 58.840 55.000 5.31 3.23 44.22 4.02
476 478 0.767375 AGACACACATGGCTTGGTCT 59.233 50.000 5.31 5.35 44.22 3.85
477 479 1.160137 GACACACATGGCTTGGTCTC 58.840 55.000 5.31 0.00 0.00 3.36
478 480 0.250901 ACACACATGGCTTGGTCTCC 60.251 55.000 5.31 0.00 0.00 3.71
479 481 0.962356 CACACATGGCTTGGTCTCCC 60.962 60.000 5.31 0.00 0.00 4.30
480 482 1.379044 CACATGGCTTGGTCTCCCC 60.379 63.158 5.31 0.00 0.00 4.81
481 483 2.276740 CATGGCTTGGTCTCCCCC 59.723 66.667 0.00 0.00 0.00 5.40
482 484 2.204291 ATGGCTTGGTCTCCCCCA 60.204 61.111 0.00 0.00 0.00 4.96
483 485 2.616458 ATGGCTTGGTCTCCCCCAC 61.616 63.158 0.00 0.00 33.14 4.61
484 486 4.410400 GGCTTGGTCTCCCCCACG 62.410 72.222 0.00 0.00 33.14 4.94
485 487 3.637273 GCTTGGTCTCCCCCACGT 61.637 66.667 0.00 0.00 33.14 4.49
486 488 3.157680 CTTGGTCTCCCCCACGTT 58.842 61.111 0.00 0.00 33.14 3.99
487 489 1.833787 GCTTGGTCTCCCCCACGTTA 61.834 60.000 0.00 0.00 33.14 3.18
488 490 0.036671 CTTGGTCTCCCCCACGTTAC 60.037 60.000 0.00 0.00 33.14 2.50
489 491 0.472352 TTGGTCTCCCCCACGTTACT 60.472 55.000 0.00 0.00 33.14 2.24
490 492 0.901580 TGGTCTCCCCCACGTTACTC 60.902 60.000 0.00 0.00 0.00 2.59
491 493 0.614134 GGTCTCCCCCACGTTACTCT 60.614 60.000 0.00 0.00 0.00 3.24
492 494 1.264295 GTCTCCCCCACGTTACTCTT 58.736 55.000 0.00 0.00 0.00 2.85
493 495 1.622312 GTCTCCCCCACGTTACTCTTT 59.378 52.381 0.00 0.00 0.00 2.52
494 496 1.621814 TCTCCCCCACGTTACTCTTTG 59.378 52.381 0.00 0.00 0.00 2.77
495 497 1.346722 CTCCCCCACGTTACTCTTTGT 59.653 52.381 0.00 0.00 0.00 2.83
496 498 2.564062 CTCCCCCACGTTACTCTTTGTA 59.436 50.000 0.00 0.00 0.00 2.41
497 499 3.175594 TCCCCCACGTTACTCTTTGTAT 58.824 45.455 0.00 0.00 0.00 2.29
498 500 3.583966 TCCCCCACGTTACTCTTTGTATT 59.416 43.478 0.00 0.00 0.00 1.89
499 501 3.937079 CCCCCACGTTACTCTTTGTATTC 59.063 47.826 0.00 0.00 0.00 1.75
500 502 3.937079 CCCCACGTTACTCTTTGTATTCC 59.063 47.826 0.00 0.00 0.00 3.01
501 503 3.615496 CCCACGTTACTCTTTGTATTCCG 59.385 47.826 0.00 0.00 0.00 4.30
502 504 4.487948 CCACGTTACTCTTTGTATTCCGA 58.512 43.478 0.00 0.00 0.00 4.55
503 505 5.107133 CCACGTTACTCTTTGTATTCCGAT 58.893 41.667 0.00 0.00 0.00 4.18
504 506 5.005394 CCACGTTACTCTTTGTATTCCGATG 59.995 44.000 0.00 0.00 0.00 3.84
505 507 5.803461 CACGTTACTCTTTGTATTCCGATGA 59.197 40.000 0.00 0.00 0.00 2.92
506 508 6.475727 CACGTTACTCTTTGTATTCCGATGAT 59.524 38.462 0.00 0.00 0.00 2.45
507 509 7.010183 CACGTTACTCTTTGTATTCCGATGATT 59.990 37.037 0.00 0.00 0.00 2.57
508 510 8.192774 ACGTTACTCTTTGTATTCCGATGATTA 58.807 33.333 0.00 0.00 0.00 1.75
509 511 9.193133 CGTTACTCTTTGTATTCCGATGATTAT 57.807 33.333 0.00 0.00 0.00 1.28
513 515 9.784531 ACTCTTTGTATTCCGATGATTATCAAT 57.215 29.630 0.00 0.00 32.67 2.57
515 517 9.777297 TCTTTGTATTCCGATGATTATCAATGA 57.223 29.630 0.00 0.00 32.67 2.57
524 526 9.573166 TCCGATGATTATCAATGAATAAAACCT 57.427 29.630 0.00 0.00 32.67 3.50
534 536 8.877864 TCAATGAATAAAACCTAGTGGATTGT 57.122 30.769 0.00 0.00 37.04 2.71
535 537 8.739039 TCAATGAATAAAACCTAGTGGATTGTG 58.261 33.333 0.00 0.00 37.04 3.33
536 538 6.509418 TGAATAAAACCTAGTGGATTGTGC 57.491 37.500 0.00 0.00 37.04 4.57
537 539 6.245408 TGAATAAAACCTAGTGGATTGTGCT 58.755 36.000 0.00 0.00 37.04 4.40
538 540 7.398829 TGAATAAAACCTAGTGGATTGTGCTA 58.601 34.615 0.00 0.00 37.04 3.49
539 541 7.885922 TGAATAAAACCTAGTGGATTGTGCTAA 59.114 33.333 0.00 0.00 37.04 3.09
540 542 8.644374 AATAAAACCTAGTGGATTGTGCTAAA 57.356 30.769 0.00 0.00 37.04 1.85
541 543 6.969993 AAAACCTAGTGGATTGTGCTAAAA 57.030 33.333 0.00 0.00 37.04 1.52
542 544 6.575162 AAACCTAGTGGATTGTGCTAAAAG 57.425 37.500 0.00 0.00 37.04 2.27
543 545 5.499004 ACCTAGTGGATTGTGCTAAAAGA 57.501 39.130 0.00 0.00 37.04 2.52
544 546 5.876357 ACCTAGTGGATTGTGCTAAAAGAA 58.124 37.500 0.00 0.00 37.04 2.52
545 547 6.303839 ACCTAGTGGATTGTGCTAAAAGAAA 58.696 36.000 0.00 0.00 37.04 2.52
546 548 6.775629 ACCTAGTGGATTGTGCTAAAAGAAAA 59.224 34.615 0.00 0.00 37.04 2.29
576 578 0.814457 GCCGAATAATTGGTGTGCCA 59.186 50.000 0.00 0.00 44.38 4.92
599 601 3.056250 ACATCTCCACAACAGCTCTAGTG 60.056 47.826 2.72 2.72 0.00 2.74
645 647 2.908015 GTGGGCAGCCGATTCCTA 59.092 61.111 5.00 0.00 0.00 2.94
647 649 1.992834 TGGGCAGCCGATTCCTACA 60.993 57.895 5.00 0.00 0.00 2.74
720 722 0.036388 CAGCCCCTAAGTCTCGCAAA 60.036 55.000 0.00 0.00 0.00 3.68
725 727 0.036388 CCTAAGTCTCGCAAAGGGCA 60.036 55.000 0.00 0.00 45.17 5.36
741 743 1.393603 GGCAAGAAATAGTCCTGGCC 58.606 55.000 0.00 0.00 37.29 5.36
835 1820 1.576356 CTAAAGGGCTCTGCATCGTC 58.424 55.000 0.00 0.00 0.00 4.20
942 1932 1.388837 GCCTCGTCTCTTCCTCCTCC 61.389 65.000 0.00 0.00 0.00 4.30
1027 2017 4.899239 GGCACCTCAGATCCGGCG 62.899 72.222 0.00 0.00 0.00 6.46
1100 2090 1.082206 TCCCGATTCCCTTCCCTGT 59.918 57.895 0.00 0.00 0.00 4.00
1120 2110 2.658548 CCCCCTCTTTGTTTGGCTC 58.341 57.895 0.00 0.00 0.00 4.70
1138 2128 3.004524 GGCTCAATCAGAAGATGCCATTC 59.995 47.826 0.00 0.00 39.45 2.67
1173 2163 2.735237 CCCGTCGATCCCCTTAGC 59.265 66.667 0.00 0.00 0.00 3.09
1174 2164 1.833049 CCCGTCGATCCCCTTAGCT 60.833 63.158 0.00 0.00 0.00 3.32
1175 2165 1.364171 CCGTCGATCCCCTTAGCTG 59.636 63.158 0.00 0.00 0.00 4.24
1176 2166 1.364171 CGTCGATCCCCTTAGCTGG 59.636 63.158 0.00 0.00 0.00 4.85
1210 2200 0.883833 CCTTGTGTTGCTGACATCCC 59.116 55.000 0.00 0.00 41.10 3.85
1299 2294 0.728542 GGTCGTTGGTTTTGACGTGT 59.271 50.000 0.00 0.00 40.03 4.49
1302 2297 3.002553 GGTCGTTGGTTTTGACGTGTTAT 59.997 43.478 0.00 0.00 40.03 1.89
1315 2310 4.035091 TGACGTGTTATTTATGATGCAGGC 59.965 41.667 0.00 0.00 0.00 4.85
1338 2333 4.966787 GGGGGTTGGCAACGCAGA 62.967 66.667 37.37 0.00 45.24 4.26
1459 2454 4.023021 AGTTTAGGACCGCGAGATTCTATC 60.023 45.833 8.23 0.00 0.00 2.08
1460 2455 2.279935 AGGACCGCGAGATTCTATCT 57.720 50.000 8.23 0.00 43.70 1.98
1461 2456 3.420300 AGGACCGCGAGATTCTATCTA 57.580 47.619 8.23 0.00 40.38 1.98
1462 2457 3.958018 AGGACCGCGAGATTCTATCTAT 58.042 45.455 8.23 0.00 40.38 1.98
1477 2472 5.340803 TCTATCTATGTTCGTTGTGAGTGC 58.659 41.667 0.00 0.00 0.00 4.40
1489 2484 1.001974 TGTGAGTGCCGCAGATTACTT 59.998 47.619 0.00 0.00 0.00 2.24
1533 2528 4.524802 AGGGACCATAAGAATCATGCAA 57.475 40.909 0.00 0.00 0.00 4.08
1571 2566 0.524862 CTGCCTGCGCAAAGAAATCT 59.475 50.000 13.05 0.00 46.66 2.40
1603 2598 5.610557 TCTTGTTGGGATCCCATATGTGATA 59.389 40.000 34.21 14.07 46.64 2.15
1604 2599 6.275381 TCTTGTTGGGATCCCATATGTGATAT 59.725 38.462 34.21 0.00 46.64 1.63
1617 2612 6.017687 CCATATGTGATATGTCATTATGGCCG 60.018 42.308 21.05 7.79 41.45 6.13
1653 2648 6.231211 TCTTGAGAAACTTAGCCTTTACTGG 58.769 40.000 0.00 0.00 0.00 4.00
1741 2834 6.706055 TCACTCAAATTAGTTTACTCAGCG 57.294 37.500 0.00 0.00 0.00 5.18
2445 3543 9.114952 TCTGTTATGATGTTGTTTTCAGTTGTA 57.885 29.630 0.00 0.00 0.00 2.41
2482 3580 6.866770 CCTAATTTAAGTATCGATCGCAGGAA 59.133 38.462 11.09 0.00 0.00 3.36
2823 3921 7.332678 TCTCAGTGTTCACTTTCATCACATATG 59.667 37.037 0.00 0.00 0.00 1.78
3074 4174 6.724893 AACTAAAATGCTTGTTAGTTGGGT 57.275 33.333 21.25 3.75 44.78 4.51
3102 4204 7.445121 TCTCCTTTCATGTGCCTAATAGTATG 58.555 38.462 0.00 0.00 0.00 2.39
3160 4262 6.206787 TGGGGGTTTAGTACTCATTGAGATA 58.793 40.000 20.33 7.19 33.32 1.98
3245 4389 7.201848 CCTGCATGAGCTAAAATTCATTCCTTA 60.202 37.037 0.00 0.00 42.74 2.69
3345 4490 2.805671 CGTTTGTACTTGCCATCACTCA 59.194 45.455 0.00 0.00 0.00 3.41
3413 4725 6.097839 TGTTAACGAGGAGCTATTACCTTGAT 59.902 38.462 12.36 4.36 39.36 2.57
3475 4789 2.771435 TGCGTGGATGCATTCTCTG 58.229 52.632 6.53 0.99 40.62 3.35
3737 5051 2.775911 TTCTCTGCAGATTGACCAGG 57.224 50.000 18.63 2.66 0.00 4.45
3856 5170 4.524328 CCCTTTGACATCTAACTGCCTTTT 59.476 41.667 0.00 0.00 0.00 2.27
3911 5225 1.372087 CGCTGAAGGTTCCCTCATGC 61.372 60.000 0.00 0.00 30.89 4.06
3962 5276 7.404671 AAAAGCTTTCCTTTACAAGAGAACA 57.595 32.000 13.10 0.00 42.82 3.18
3963 5277 7.588497 AAAGCTTTCCTTTACAAGAGAACAT 57.412 32.000 5.69 0.00 41.86 2.71
4003 5317 1.742308 TGTGGGTTAGGAAGAAGCCT 58.258 50.000 6.01 0.00 45.47 4.58
4113 5430 7.985634 TGTAATTTTTGTTTGAAGTGCTCTC 57.014 32.000 0.00 0.00 0.00 3.20
4118 5435 9.651913 AATTTTTGTTTGAAGTGCTCTCTTTTA 57.348 25.926 0.00 0.00 0.00 1.52
4132 5449 6.072119 TGCTCTCTTTTACTCGTATTCAGTGA 60.072 38.462 0.00 0.00 0.00 3.41
4181 5499 4.216257 ACAGTACATTTCGCTGCATTTTCT 59.784 37.500 0.00 0.00 33.87 2.52
4194 5512 3.512329 TGCATTTTCTCATGAGCATTGGT 59.488 39.130 18.36 0.00 0.00 3.67
4253 5571 1.884497 CGCCCCAACCTACACAATGAA 60.884 52.381 0.00 0.00 0.00 2.57
4254 5572 2.456577 GCCCCAACCTACACAATGAAT 58.543 47.619 0.00 0.00 0.00 2.57
4255 5573 2.427095 GCCCCAACCTACACAATGAATC 59.573 50.000 0.00 0.00 0.00 2.52
4256 5574 3.877735 GCCCCAACCTACACAATGAATCT 60.878 47.826 0.00 0.00 0.00 2.40
4257 5575 4.627741 GCCCCAACCTACACAATGAATCTA 60.628 45.833 0.00 0.00 0.00 1.98
4258 5576 5.694995 CCCCAACCTACACAATGAATCTAT 58.305 41.667 0.00 0.00 0.00 1.98
4259 5577 6.690460 GCCCCAACCTACACAATGAATCTATA 60.690 42.308 0.00 0.00 0.00 1.31
4260 5578 7.461749 CCCCAACCTACACAATGAATCTATAT 58.538 38.462 0.00 0.00 0.00 0.86
4261 5579 8.602424 CCCCAACCTACACAATGAATCTATATA 58.398 37.037 0.00 0.00 0.00 0.86
4285 5603 9.753674 ATAATTTTCCTTTCTCAACCATAGTGA 57.246 29.630 0.00 0.00 0.00 3.41
4286 5604 8.655935 AATTTTCCTTTCTCAACCATAGTGAT 57.344 30.769 0.00 0.00 0.00 3.06
4287 5605 7.687941 TTTTCCTTTCTCAACCATAGTGATC 57.312 36.000 0.00 0.00 0.00 2.92
4288 5606 5.011090 TCCTTTCTCAACCATAGTGATCG 57.989 43.478 0.00 0.00 0.00 3.69
4289 5607 4.122776 CCTTTCTCAACCATAGTGATCGG 58.877 47.826 0.00 0.00 0.00 4.18
4290 5608 3.819564 TTCTCAACCATAGTGATCGGG 57.180 47.619 0.00 0.00 0.00 5.14
4291 5609 3.026707 TCTCAACCATAGTGATCGGGA 57.973 47.619 0.00 0.00 0.00 5.14
4292 5610 2.693591 TCTCAACCATAGTGATCGGGAC 59.306 50.000 0.00 0.00 0.00 4.46
4293 5611 2.695666 CTCAACCATAGTGATCGGGACT 59.304 50.000 0.00 0.00 0.00 3.85
4294 5612 2.693591 TCAACCATAGTGATCGGGACTC 59.306 50.000 0.00 0.00 0.00 3.36
4295 5613 1.705873 ACCATAGTGATCGGGACTCC 58.294 55.000 0.00 0.00 0.00 3.85
4296 5614 0.969894 CCATAGTGATCGGGACTCCC 59.030 60.000 3.63 3.63 41.09 4.30
4305 5623 3.721868 GGGACTCCCGGAATGACA 58.278 61.111 0.73 0.00 32.13 3.58
4306 5624 2.221918 GGGACTCCCGGAATGACAT 58.778 57.895 0.73 0.00 32.13 3.06
4307 5625 0.179045 GGGACTCCCGGAATGACATG 60.179 60.000 0.73 0.00 32.13 3.21
4308 5626 0.830648 GGACTCCCGGAATGACATGA 59.169 55.000 0.73 0.00 0.00 3.07
4349 5667 2.168521 CACAACCATAGTGATCGGGACT 59.831 50.000 0.00 0.00 39.30 3.85
4350 5668 2.431057 ACAACCATAGTGATCGGGACTC 59.569 50.000 0.00 0.00 0.00 3.36
4351 5669 1.705873 ACCATAGTGATCGGGACTCC 58.294 55.000 0.00 0.00 0.00 3.85
4352 5670 0.969894 CCATAGTGATCGGGACTCCC 59.030 60.000 3.63 3.63 41.09 4.30
4361 5679 3.721868 GGGACTCCCGGAATGACA 58.278 61.111 0.73 0.00 32.13 3.58
4362 5680 2.221918 GGGACTCCCGGAATGACAT 58.778 57.895 0.73 0.00 32.13 3.06
4363 5681 0.179045 GGGACTCCCGGAATGACATG 60.179 60.000 0.73 0.00 32.13 3.21
4364 5682 0.830648 GGACTCCCGGAATGACATGA 59.169 55.000 0.73 0.00 0.00 3.07
4365 5683 1.209504 GGACTCCCGGAATGACATGAA 59.790 52.381 0.73 0.00 0.00 2.57
4366 5684 2.158755 GGACTCCCGGAATGACATGAAT 60.159 50.000 0.73 0.00 0.00 2.57
4367 5685 3.134458 GACTCCCGGAATGACATGAATC 58.866 50.000 0.73 0.00 0.00 2.52
4368 5686 2.774234 ACTCCCGGAATGACATGAATCT 59.226 45.455 0.73 0.00 0.00 2.40
4369 5687 3.967326 ACTCCCGGAATGACATGAATCTA 59.033 43.478 0.73 0.00 0.00 1.98
4370 5688 4.594920 ACTCCCGGAATGACATGAATCTAT 59.405 41.667 0.73 0.00 0.00 1.98
4371 5689 5.780282 ACTCCCGGAATGACATGAATCTATA 59.220 40.000 0.73 0.00 0.00 1.31
4372 5690 6.441924 ACTCCCGGAATGACATGAATCTATAT 59.558 38.462 0.73 0.00 0.00 0.86
4373 5691 7.619698 ACTCCCGGAATGACATGAATCTATATA 59.380 37.037 0.73 0.00 0.00 0.86
4374 5692 8.374184 TCCCGGAATGACATGAATCTATATAA 57.626 34.615 0.73 0.00 0.00 0.98
4375 5693 8.992349 TCCCGGAATGACATGAATCTATATAAT 58.008 33.333 0.73 0.00 0.00 1.28
4376 5694 9.618890 CCCGGAATGACATGAATCTATATAATT 57.381 33.333 0.73 0.00 0.00 1.40
4397 5715 7.595819 AATTTTCCTTTCACAACCATAGTGA 57.404 32.000 0.00 0.00 43.72 3.41
4398 5716 7.781324 ATTTTCCTTTCACAACCATAGTGAT 57.219 32.000 0.00 0.00 44.66 3.06
4399 5717 6.817765 TTTCCTTTCACAACCATAGTGATC 57.182 37.500 0.00 0.00 44.66 2.92
4400 5718 4.503910 TCCTTTCACAACCATAGTGATCG 58.496 43.478 0.00 0.00 44.66 3.69
4401 5719 3.623060 CCTTTCACAACCATAGTGATCGG 59.377 47.826 0.00 0.00 44.66 4.18
4402 5720 2.979814 TCACAACCATAGTGATCGGG 57.020 50.000 0.00 0.00 40.80 5.14
4403 5721 2.462723 TCACAACCATAGTGATCGGGA 58.537 47.619 0.00 0.00 40.80 5.14
4404 5722 2.167693 TCACAACCATAGTGATCGGGAC 59.832 50.000 0.00 0.00 40.80 4.46
4408 5726 0.969894 CCATAGTGATCGGGACTCCC 59.030 60.000 3.63 3.63 41.09 4.30
4434 5754 3.250744 TGACGCCGACTTCATCTAAAAG 58.749 45.455 0.00 0.00 0.00 2.27
4438 5758 2.093128 GCCGACTTCATCTAAAAGGGGA 60.093 50.000 0.00 0.00 0.00 4.81
4441 5761 4.636206 CCGACTTCATCTAAAAGGGGAAAG 59.364 45.833 0.00 0.00 0.00 2.62
4442 5762 5.246307 CGACTTCATCTAAAAGGGGAAAGT 58.754 41.667 0.00 0.00 0.00 2.66
4445 5765 7.290110 ACTTCATCTAAAAGGGGAAAGTTTG 57.710 36.000 0.00 0.00 0.00 2.93
4446 5766 6.839134 ACTTCATCTAAAAGGGGAAAGTTTGT 59.161 34.615 0.00 0.00 0.00 2.83
4447 5767 6.894339 TCATCTAAAAGGGGAAAGTTTGTC 57.106 37.500 0.00 0.00 0.00 3.18
4448 5768 6.610830 TCATCTAAAAGGGGAAAGTTTGTCT 58.389 36.000 0.00 0.00 0.00 3.41
4449 5769 7.751646 TCATCTAAAAGGGGAAAGTTTGTCTA 58.248 34.615 0.00 0.00 0.00 2.59
4450 5770 7.664318 TCATCTAAAAGGGGAAAGTTTGTCTAC 59.336 37.037 0.00 0.00 0.00 2.59
4469 5791 0.438830 CGCTAGTTGACTGAAACCGC 59.561 55.000 0.00 0.00 0.00 5.68
4547 5877 5.489792 AGTCCAAGAATAGCTCTGAAACA 57.510 39.130 0.00 0.00 33.37 2.83
4557 5887 1.683385 GCTCTGAAACAGCACCCTTTT 59.317 47.619 0.00 0.00 36.82 2.27
4597 5927 0.328926 TCCGTTAACCAATCCACCCC 59.671 55.000 0.00 0.00 0.00 4.95
4617 5947 2.029649 CCAAGACACAAGAAAGGCCATG 60.030 50.000 5.01 0.00 0.00 3.66
4653 5983 1.923864 TGCACTCACATAATACGCGTG 59.076 47.619 24.59 7.13 0.00 5.34
4802 6137 1.254284 CCCCTCAAGTCACTCGAGCT 61.254 60.000 13.61 0.00 0.00 4.09
4806 6141 2.091112 CAAGTCACTCGAGCTGCCG 61.091 63.158 13.61 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.438228 TTTTTCGTAGACATTGTACATATTCCA 57.562 29.630 0.00 0.00 34.32 3.53
91 93 9.508642 TTTCATTGGATTTATTTGGGGTTTTAC 57.491 29.630 0.00 0.00 0.00 2.01
97 99 6.479884 TGGTTTTCATTGGATTTATTTGGGG 58.520 36.000 0.00 0.00 0.00 4.96
127 129 7.654568 TCTTTCTTCCCGTTTTCTTTATTTCC 58.345 34.615 0.00 0.00 0.00 3.13
189 191 8.819974 ACTGTTTGCATATGTTTTCTTTCTTTG 58.180 29.630 4.29 0.00 0.00 2.77
221 223 1.269517 GCGCATGGGTTTTCTTTGTCA 60.270 47.619 11.82 0.00 0.00 3.58
279 281 4.042187 AGCCCATAAACTCAGTCTTGTCTT 59.958 41.667 0.00 0.00 0.00 3.01
284 286 4.373156 AACAGCCCATAAACTCAGTCTT 57.627 40.909 0.00 0.00 0.00 3.01
366 368 9.283768 TCATGGACGAAATTACATAGCATAAAT 57.716 29.630 0.00 0.00 0.00 1.40
367 369 8.669946 TCATGGACGAAATTACATAGCATAAA 57.330 30.769 0.00 0.00 0.00 1.40
370 372 7.566760 TTTCATGGACGAAATTACATAGCAT 57.433 32.000 0.00 0.00 30.00 3.79
371 373 6.993786 TTTCATGGACGAAATTACATAGCA 57.006 33.333 0.00 0.00 30.00 3.49
393 395 6.820152 GGGCTTCATAATTTCAGCATCTTTTT 59.180 34.615 0.00 0.00 33.64 1.94
394 396 6.070653 TGGGCTTCATAATTTCAGCATCTTTT 60.071 34.615 0.00 0.00 33.64 2.27
395 397 5.422970 TGGGCTTCATAATTTCAGCATCTTT 59.577 36.000 0.00 0.00 33.64 2.52
396 398 4.957954 TGGGCTTCATAATTTCAGCATCTT 59.042 37.500 0.00 0.00 33.64 2.40
397 399 4.539726 TGGGCTTCATAATTTCAGCATCT 58.460 39.130 0.00 0.00 33.64 2.90
398 400 4.924305 TGGGCTTCATAATTTCAGCATC 57.076 40.909 0.00 0.00 33.64 3.91
399 401 6.982160 TTATGGGCTTCATAATTTCAGCAT 57.018 33.333 8.31 0.00 41.81 3.79
409 411 6.264528 ACCTAGCTAGATTATGGGCTTCATA 58.735 40.000 22.70 0.00 37.30 2.15
410 412 5.097234 ACCTAGCTAGATTATGGGCTTCAT 58.903 41.667 22.70 0.00 39.78 2.57
411 413 4.493618 ACCTAGCTAGATTATGGGCTTCA 58.506 43.478 22.70 0.00 36.40 3.02
412 414 5.491323 AACCTAGCTAGATTATGGGCTTC 57.509 43.478 22.70 0.00 36.40 3.86
413 415 5.625150 CAAACCTAGCTAGATTATGGGCTT 58.375 41.667 22.70 0.00 36.40 4.35
414 416 4.505742 GCAAACCTAGCTAGATTATGGGCT 60.506 45.833 22.70 0.00 38.62 5.19
415 417 3.753797 GCAAACCTAGCTAGATTATGGGC 59.246 47.826 22.70 9.75 0.00 5.36
416 418 5.234466 AGCAAACCTAGCTAGATTATGGG 57.766 43.478 22.70 6.86 41.32 4.00
417 419 6.998802 AGTAGCAAACCTAGCTAGATTATGG 58.001 40.000 22.70 7.62 44.54 2.74
418 420 8.798402 AGTAGTAGCAAACCTAGCTAGATTATG 58.202 37.037 22.70 14.98 44.54 1.90
419 421 8.943594 AGTAGTAGCAAACCTAGCTAGATTAT 57.056 34.615 22.70 10.64 44.54 1.28
420 422 8.219178 AGAGTAGTAGCAAACCTAGCTAGATTA 58.781 37.037 22.70 0.00 44.54 1.75
421 423 7.064229 AGAGTAGTAGCAAACCTAGCTAGATT 58.936 38.462 22.70 8.74 44.54 2.40
422 424 6.607019 AGAGTAGTAGCAAACCTAGCTAGAT 58.393 40.000 22.70 0.61 44.54 1.98
423 425 6.003859 AGAGTAGTAGCAAACCTAGCTAGA 57.996 41.667 22.70 0.00 44.54 2.43
424 426 7.804843 TTAGAGTAGTAGCAAACCTAGCTAG 57.195 40.000 14.20 14.20 44.54 3.42
425 427 8.763984 ATTTAGAGTAGTAGCAAACCTAGCTA 57.236 34.615 0.00 0.00 43.25 3.32
426 428 7.342284 TGATTTAGAGTAGTAGCAAACCTAGCT 59.658 37.037 0.00 0.00 45.77 3.32
427 429 7.490000 TGATTTAGAGTAGTAGCAAACCTAGC 58.510 38.462 0.00 0.00 0.00 3.42
428 430 8.138712 CCTGATTTAGAGTAGTAGCAAACCTAG 58.861 40.741 0.00 0.00 0.00 3.02
429 431 7.069578 CCCTGATTTAGAGTAGTAGCAAACCTA 59.930 40.741 0.00 0.00 0.00 3.08
430 432 6.127026 CCCTGATTTAGAGTAGTAGCAAACCT 60.127 42.308 0.00 0.00 0.00 3.50
431 433 6.049790 CCCTGATTTAGAGTAGTAGCAAACC 58.950 44.000 0.00 0.00 0.00 3.27
432 434 6.049790 CCCCTGATTTAGAGTAGTAGCAAAC 58.950 44.000 0.00 0.00 0.00 2.93
433 435 5.962031 TCCCCTGATTTAGAGTAGTAGCAAA 59.038 40.000 0.00 0.00 0.00 3.68
434 436 5.525484 TCCCCTGATTTAGAGTAGTAGCAA 58.475 41.667 0.00 0.00 0.00 3.91
435 437 5.103643 TCTCCCCTGATTTAGAGTAGTAGCA 60.104 44.000 0.00 0.00 0.00 3.49
436 438 5.242171 GTCTCCCCTGATTTAGAGTAGTAGC 59.758 48.000 0.00 0.00 0.00 3.58
437 439 6.263617 GTGTCTCCCCTGATTTAGAGTAGTAG 59.736 46.154 0.00 0.00 0.00 2.57
438 440 6.127793 GTGTCTCCCCTGATTTAGAGTAGTA 58.872 44.000 0.00 0.00 0.00 1.82
439 441 4.957327 GTGTCTCCCCTGATTTAGAGTAGT 59.043 45.833 0.00 0.00 0.00 2.73
440 442 4.956700 TGTGTCTCCCCTGATTTAGAGTAG 59.043 45.833 0.00 0.00 0.00 2.57
441 443 4.710375 GTGTGTCTCCCCTGATTTAGAGTA 59.290 45.833 0.00 0.00 0.00 2.59
442 444 3.515901 GTGTGTCTCCCCTGATTTAGAGT 59.484 47.826 0.00 0.00 0.00 3.24
443 445 3.515502 TGTGTGTCTCCCCTGATTTAGAG 59.484 47.826 0.00 0.00 0.00 2.43
444 446 3.516586 TGTGTGTCTCCCCTGATTTAGA 58.483 45.455 0.00 0.00 0.00 2.10
445 447 3.981071 TGTGTGTCTCCCCTGATTTAG 57.019 47.619 0.00 0.00 0.00 1.85
446 448 3.054434 CCATGTGTGTCTCCCCTGATTTA 60.054 47.826 0.00 0.00 0.00 1.40
447 449 2.291153 CCATGTGTGTCTCCCCTGATTT 60.291 50.000 0.00 0.00 0.00 2.17
448 450 1.283029 CCATGTGTGTCTCCCCTGATT 59.717 52.381 0.00 0.00 0.00 2.57
449 451 0.914644 CCATGTGTGTCTCCCCTGAT 59.085 55.000 0.00 0.00 0.00 2.90
450 452 1.841302 GCCATGTGTGTCTCCCCTGA 61.841 60.000 0.00 0.00 0.00 3.86
451 453 1.377725 GCCATGTGTGTCTCCCCTG 60.378 63.158 0.00 0.00 0.00 4.45
452 454 1.136329 AAGCCATGTGTGTCTCCCCT 61.136 55.000 0.00 0.00 0.00 4.79
453 455 0.962356 CAAGCCATGTGTGTCTCCCC 60.962 60.000 0.00 0.00 0.00 4.81
454 456 0.962356 CCAAGCCATGTGTGTCTCCC 60.962 60.000 0.00 0.00 0.00 4.30
455 457 0.250901 ACCAAGCCATGTGTGTCTCC 60.251 55.000 0.00 0.00 0.00 3.71
456 458 1.160137 GACCAAGCCATGTGTGTCTC 58.840 55.000 0.00 0.00 0.00 3.36
457 459 0.767375 AGACCAAGCCATGTGTGTCT 59.233 50.000 0.00 0.00 0.00 3.41
458 460 1.160137 GAGACCAAGCCATGTGTGTC 58.840 55.000 0.00 0.00 0.00 3.67
459 461 0.250901 GGAGACCAAGCCATGTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
460 462 2.559785 GGAGACCAAGCCATGTGTG 58.440 57.895 0.00 0.00 0.00 3.82
473 475 1.264295 AAGAGTAACGTGGGGGAGAC 58.736 55.000 0.00 0.00 0.00 3.36
474 476 1.621814 CAAAGAGTAACGTGGGGGAGA 59.378 52.381 0.00 0.00 0.00 3.71
475 477 1.346722 ACAAAGAGTAACGTGGGGGAG 59.653 52.381 0.00 0.00 0.00 4.30
476 478 1.426751 ACAAAGAGTAACGTGGGGGA 58.573 50.000 0.00 0.00 0.00 4.81
477 479 3.622166 ATACAAAGAGTAACGTGGGGG 57.378 47.619 0.00 0.00 36.05 5.40
478 480 3.937079 GGAATACAAAGAGTAACGTGGGG 59.063 47.826 0.00 0.00 36.05 4.96
479 481 3.615496 CGGAATACAAAGAGTAACGTGGG 59.385 47.826 0.00 0.00 36.05 4.61
480 482 4.487948 TCGGAATACAAAGAGTAACGTGG 58.512 43.478 0.00 0.00 36.05 4.94
481 483 5.803461 TCATCGGAATACAAAGAGTAACGTG 59.197 40.000 0.00 0.00 36.05 4.49
482 484 5.957798 TCATCGGAATACAAAGAGTAACGT 58.042 37.500 0.00 0.00 36.05 3.99
483 485 7.464830 AATCATCGGAATACAAAGAGTAACG 57.535 36.000 0.00 0.00 36.05 3.18
487 489 9.784531 ATTGATAATCATCGGAATACAAAGAGT 57.215 29.630 0.00 0.00 33.51 3.24
489 491 9.777297 TCATTGATAATCATCGGAATACAAAGA 57.223 29.630 0.00 0.00 33.51 2.52
498 500 9.573166 AGGTTTTATTCATTGATAATCATCGGA 57.427 29.630 0.00 0.00 33.51 4.55
508 510 9.479549 ACAATCCACTAGGTTTTATTCATTGAT 57.520 29.630 0.00 0.00 35.89 2.57
509 511 8.739039 CACAATCCACTAGGTTTTATTCATTGA 58.261 33.333 0.00 0.00 35.89 2.57
510 512 7.489113 GCACAATCCACTAGGTTTTATTCATTG 59.511 37.037 0.00 0.00 35.89 2.82
511 513 7.397192 AGCACAATCCACTAGGTTTTATTCATT 59.603 33.333 0.00 0.00 35.89 2.57
512 514 6.891908 AGCACAATCCACTAGGTTTTATTCAT 59.108 34.615 0.00 0.00 35.89 2.57
513 515 6.245408 AGCACAATCCACTAGGTTTTATTCA 58.755 36.000 0.00 0.00 35.89 2.57
514 516 6.759497 AGCACAATCCACTAGGTTTTATTC 57.241 37.500 0.00 0.00 35.89 1.75
515 517 8.644374 TTTAGCACAATCCACTAGGTTTTATT 57.356 30.769 0.00 0.00 35.89 1.40
516 518 8.644374 TTTTAGCACAATCCACTAGGTTTTAT 57.356 30.769 0.00 0.00 35.89 1.40
517 519 7.940137 TCTTTTAGCACAATCCACTAGGTTTTA 59.060 33.333 0.00 0.00 35.89 1.52
518 520 6.775629 TCTTTTAGCACAATCCACTAGGTTTT 59.224 34.615 0.00 0.00 35.89 2.43
519 521 6.303839 TCTTTTAGCACAATCCACTAGGTTT 58.696 36.000 0.00 0.00 35.89 3.27
520 522 5.876357 TCTTTTAGCACAATCCACTAGGTT 58.124 37.500 0.00 0.00 35.89 3.50
521 523 5.499004 TCTTTTAGCACAATCCACTAGGT 57.501 39.130 0.00 0.00 35.89 3.08
522 524 6.817765 TTTCTTTTAGCACAATCCACTAGG 57.182 37.500 0.00 0.00 0.00 3.02
523 525 9.132521 CAATTTTCTTTTAGCACAATCCACTAG 57.867 33.333 0.00 0.00 0.00 2.57
524 526 8.087750 CCAATTTTCTTTTAGCACAATCCACTA 58.912 33.333 0.00 0.00 0.00 2.74
525 527 6.930722 CCAATTTTCTTTTAGCACAATCCACT 59.069 34.615 0.00 0.00 0.00 4.00
526 528 6.928492 TCCAATTTTCTTTTAGCACAATCCAC 59.072 34.615 0.00 0.00 0.00 4.02
527 529 7.060383 TCCAATTTTCTTTTAGCACAATCCA 57.940 32.000 0.00 0.00 0.00 3.41
528 530 7.413328 GCATCCAATTTTCTTTTAGCACAATCC 60.413 37.037 0.00 0.00 0.00 3.01
529 531 7.118101 TGCATCCAATTTTCTTTTAGCACAATC 59.882 33.333 0.00 0.00 0.00 2.67
530 532 6.935771 TGCATCCAATTTTCTTTTAGCACAAT 59.064 30.769 0.00 0.00 0.00 2.71
531 533 6.286758 TGCATCCAATTTTCTTTTAGCACAA 58.713 32.000 0.00 0.00 0.00 3.33
532 534 5.851720 TGCATCCAATTTTCTTTTAGCACA 58.148 33.333 0.00 0.00 0.00 4.57
533 535 6.619232 GCTTGCATCCAATTTTCTTTTAGCAC 60.619 38.462 0.00 0.00 0.00 4.40
534 536 5.409214 GCTTGCATCCAATTTTCTTTTAGCA 59.591 36.000 0.00 0.00 0.00 3.49
535 537 5.163824 GGCTTGCATCCAATTTTCTTTTAGC 60.164 40.000 0.00 0.00 0.00 3.09
536 538 5.062558 CGGCTTGCATCCAATTTTCTTTTAG 59.937 40.000 6.37 0.00 0.00 1.85
537 539 4.928615 CGGCTTGCATCCAATTTTCTTTTA 59.071 37.500 6.37 0.00 0.00 1.52
538 540 3.747529 CGGCTTGCATCCAATTTTCTTTT 59.252 39.130 6.37 0.00 0.00 2.27
539 541 3.006752 TCGGCTTGCATCCAATTTTCTTT 59.993 39.130 6.37 0.00 0.00 2.52
540 542 2.562298 TCGGCTTGCATCCAATTTTCTT 59.438 40.909 6.37 0.00 0.00 2.52
541 543 2.170166 TCGGCTTGCATCCAATTTTCT 58.830 42.857 6.37 0.00 0.00 2.52
542 544 2.652941 TCGGCTTGCATCCAATTTTC 57.347 45.000 6.37 0.00 0.00 2.29
543 545 3.615224 ATTCGGCTTGCATCCAATTTT 57.385 38.095 6.37 0.00 0.00 1.82
544 546 4.734398 TTATTCGGCTTGCATCCAATTT 57.266 36.364 6.37 0.00 0.00 1.82
545 547 4.942761 ATTATTCGGCTTGCATCCAATT 57.057 36.364 6.37 0.00 0.00 2.32
546 548 4.501915 CCAATTATTCGGCTTGCATCCAAT 60.502 41.667 6.37 7.14 0.00 3.16
576 578 3.580458 ACTAGAGCTGTTGTGGAGATGTT 59.420 43.478 0.00 0.00 0.00 2.71
664 666 4.408821 AGCCTTGCCAATCGCGGA 62.409 61.111 6.13 0.00 42.08 5.54
720 722 1.064389 GCCAGGACTATTTCTTGCCCT 60.064 52.381 0.00 0.00 29.70 5.19
725 727 1.681229 TGGGGCCAGGACTATTTCTT 58.319 50.000 4.39 0.00 0.00 2.52
741 743 1.301244 CGGCTCGATCATCCTTGGG 60.301 63.158 0.00 0.00 0.00 4.12
765 767 2.922740 TCGTCAGGGCTACTTGTTTT 57.077 45.000 0.00 0.00 0.00 2.43
777 779 2.046892 CTGGTGGGCTTCGTCAGG 60.047 66.667 0.00 0.00 0.00 3.86
942 1932 3.537874 GGAGATCGGGTCGGGTGG 61.538 72.222 0.00 0.00 0.00 4.61
1027 2017 4.475135 GGCTTGGAGGAGCGGGAC 62.475 72.222 0.00 0.00 43.62 4.46
1083 2073 1.527370 GACAGGGAAGGGAATCGGG 59.473 63.158 0.00 0.00 0.00 5.14
1107 2097 5.132502 TCTTCTGATTGAGCCAAACAAAGA 58.867 37.500 12.52 12.52 30.26 2.52
1120 2110 2.626743 GGGGAATGGCATCTTCTGATTG 59.373 50.000 0.00 0.00 0.00 2.67
1138 2128 0.106894 GGCTACCGAAATCTGAGGGG 59.893 60.000 0.00 0.00 0.00 4.79
1173 2163 0.249657 GGCGAACCTAGATCAGCCAG 60.250 60.000 17.63 0.00 43.65 4.85
1174 2164 1.823295 GGCGAACCTAGATCAGCCA 59.177 57.895 17.63 0.00 43.65 4.75
1175 2165 4.760757 GGCGAACCTAGATCAGCC 57.239 61.111 0.00 12.02 37.61 4.85
1227 2217 5.171476 ACGAGACGACAGATTTGAATCAAT 58.829 37.500 0.00 0.00 37.89 2.57
1275 2265 1.935199 GTCAAAACCAACGACCGAAGA 59.065 47.619 0.00 0.00 0.00 2.87
1276 2266 1.332552 CGTCAAAACCAACGACCGAAG 60.333 52.381 0.00 0.00 41.29 3.79
1278 2268 0.459934 ACGTCAAAACCAACGACCGA 60.460 50.000 1.52 0.00 41.29 4.69
1279 2269 0.315544 CACGTCAAAACCAACGACCG 60.316 55.000 1.52 0.00 41.29 4.79
1289 2284 7.026562 CCTGCATCATAAATAACACGTCAAAA 58.973 34.615 0.00 0.00 0.00 2.44
1299 2294 3.723260 TCGACGCCTGCATCATAAATAA 58.277 40.909 0.00 0.00 0.00 1.40
1302 2297 1.570813 CTCGACGCCTGCATCATAAA 58.429 50.000 0.00 0.00 0.00 1.40
1315 2310 4.323477 TTGCCAACCCCCTCGACG 62.323 66.667 0.00 0.00 0.00 5.12
1326 2321 0.320858 TTATCCGTCTGCGTTGCCAA 60.321 50.000 0.00 0.00 36.15 4.52
1335 2330 3.223435 TCTCCTTAGGCTTATCCGTCTG 58.777 50.000 0.00 0.00 40.77 3.51
1338 2333 3.371965 TGTTCTCCTTAGGCTTATCCGT 58.628 45.455 0.00 0.00 40.77 4.69
1382 2377 1.805943 GCAACAATCCAACCAAATGCC 59.194 47.619 0.00 0.00 0.00 4.40
1459 2454 1.390123 CGGCACTCACAACGAACATAG 59.610 52.381 0.00 0.00 0.00 2.23
1460 2455 1.424403 CGGCACTCACAACGAACATA 58.576 50.000 0.00 0.00 0.00 2.29
1461 2456 1.841663 GCGGCACTCACAACGAACAT 61.842 55.000 0.00 0.00 0.00 2.71
1462 2457 2.530497 GCGGCACTCACAACGAACA 61.530 57.895 0.00 0.00 0.00 3.18
1477 2472 1.659098 GACCGTCAAAGTAATCTGCGG 59.341 52.381 0.00 0.00 42.86 5.69
1533 2528 2.297033 CAGGCAGGCAAACATAAACAGT 59.703 45.455 0.00 0.00 0.00 3.55
1571 2566 5.398236 TGGGATCCCAACAAGAAAAATGTA 58.602 37.500 32.09 1.01 44.12 2.29
1603 2598 3.648339 GCATTTCGGCCATAATGACAT 57.352 42.857 23.92 1.42 34.44 3.06
1617 2612 6.264841 AGTTTCTCAAGATCAAGGCATTTC 57.735 37.500 0.00 0.00 0.00 2.17
1675 2670 2.884639 ACAAGCATGGTTACACTCCAAC 59.115 45.455 10.31 0.00 38.52 3.77
1715 2808 7.689812 CGCTGAGTAAACTAATTTGAGTGATTG 59.310 37.037 0.00 0.00 0.00 2.67
1716 2809 7.602644 TCGCTGAGTAAACTAATTTGAGTGATT 59.397 33.333 0.00 0.00 0.00 2.57
1741 2834 3.002246 TGCAACGTGAACAATCTGTCTTC 59.998 43.478 0.00 0.00 0.00 2.87
2258 3352 9.708222 CACATGCTGCTAAAAACTATAACTTAG 57.292 33.333 0.00 0.00 0.00 2.18
2823 3921 3.676646 GCACATGCATCAAACTTCCTTTC 59.323 43.478 0.00 0.00 41.59 2.62
2928 4026 2.441750 AGTAAACCAGGAAGGCACAAGA 59.558 45.455 0.00 0.00 43.14 3.02
3074 4174 4.908601 TTAGGCACATGAAAGGAGAGAA 57.091 40.909 0.00 0.00 0.00 2.87
3102 4204 3.609853 TGTTAGTTCACTGGATCATGCC 58.390 45.455 0.00 0.00 0.00 4.40
3345 4490 7.939588 AGATAAGCCTGTTAAGAGTTGAACTTT 59.060 33.333 0.00 0.00 0.00 2.66
3413 4725 9.442047 AAAACATGACAAGTTTTCCACAATTTA 57.558 25.926 14.15 0.00 43.53 1.40
3475 4789 6.256757 GTCAGGATCTATAACAGAAGTTGCAC 59.743 42.308 0.00 0.00 38.69 4.57
3737 5051 1.417890 CACCAGTCCTCCCATGATACC 59.582 57.143 0.00 0.00 0.00 2.73
3856 5170 3.074390 ACTCTGGTGTTGATTTGGATCCA 59.926 43.478 11.44 11.44 0.00 3.41
3886 5200 3.353836 GAACCTTCAGCGGCGCAA 61.354 61.111 35.02 19.42 0.00 4.85
3911 5225 1.066573 AGACCACATCGAAGAAGCAGG 60.067 52.381 0.00 0.00 43.58 4.85
3962 5276 8.137437 CCACAAGACAAAATAAAACAGAGTGAT 58.863 33.333 0.00 0.00 0.00 3.06
3963 5277 7.416213 CCCACAAGACAAAATAAAACAGAGTGA 60.416 37.037 0.00 0.00 0.00 3.41
4003 5317 8.641541 AGAAAGGAAATTAAAGATTGTTCAGCA 58.358 29.630 0.00 0.00 0.00 4.41
4098 5415 5.234329 CGAGTAAAAGAGAGCACTTCAAACA 59.766 40.000 0.00 0.00 0.00 2.83
4113 5430 9.569167 TTCATACTCACTGAATACGAGTAAAAG 57.431 33.333 0.00 0.00 43.46 2.27
4118 5435 7.489435 CACAATTCATACTCACTGAATACGAGT 59.511 37.037 0.00 0.00 41.33 4.18
4153 5471 2.672874 GCAGCGAAATGTACTGTCATCA 59.327 45.455 0.00 0.00 33.87 3.07
4181 5499 1.005097 AGGCTCAACCAATGCTCATGA 59.995 47.619 0.00 0.00 43.14 3.07
4219 5537 1.195115 GGGGCGCTAGATATGATCCA 58.805 55.000 7.64 0.00 0.00 3.41
4259 5577 9.753674 TCACTATGGTTGAGAAAGGAAAATTAT 57.246 29.630 0.00 0.00 0.00 1.28
4260 5578 9.753674 ATCACTATGGTTGAGAAAGGAAAATTA 57.246 29.630 0.00 0.00 0.00 1.40
4261 5579 8.655935 ATCACTATGGTTGAGAAAGGAAAATT 57.344 30.769 0.00 0.00 0.00 1.82
4262 5580 7.066284 CGATCACTATGGTTGAGAAAGGAAAAT 59.934 37.037 0.00 0.00 0.00 1.82
4263 5581 6.371548 CGATCACTATGGTTGAGAAAGGAAAA 59.628 38.462 0.00 0.00 0.00 2.29
4264 5582 5.874810 CGATCACTATGGTTGAGAAAGGAAA 59.125 40.000 0.00 0.00 0.00 3.13
4265 5583 5.419542 CGATCACTATGGTTGAGAAAGGAA 58.580 41.667 0.00 0.00 0.00 3.36
4266 5584 4.141937 CCGATCACTATGGTTGAGAAAGGA 60.142 45.833 0.00 0.00 0.00 3.36
4267 5585 4.122776 CCGATCACTATGGTTGAGAAAGG 58.877 47.826 0.00 0.00 0.00 3.11
4268 5586 4.122776 CCCGATCACTATGGTTGAGAAAG 58.877 47.826 0.00 0.00 0.00 2.62
4269 5587 3.772572 TCCCGATCACTATGGTTGAGAAA 59.227 43.478 0.00 0.00 0.00 2.52
4270 5588 3.132289 GTCCCGATCACTATGGTTGAGAA 59.868 47.826 0.00 0.00 0.00 2.87
4271 5589 2.693591 GTCCCGATCACTATGGTTGAGA 59.306 50.000 0.00 0.00 0.00 3.27
4272 5590 2.695666 AGTCCCGATCACTATGGTTGAG 59.304 50.000 0.00 0.00 0.00 3.02
4273 5591 2.693591 GAGTCCCGATCACTATGGTTGA 59.306 50.000 0.00 0.00 0.00 3.18
4274 5592 2.224066 GGAGTCCCGATCACTATGGTTG 60.224 54.545 0.00 0.00 0.00 3.77
4275 5593 2.040178 GGAGTCCCGATCACTATGGTT 58.960 52.381 0.00 0.00 0.00 3.67
4276 5594 1.705873 GGAGTCCCGATCACTATGGT 58.294 55.000 0.00 0.00 0.00 3.55
4277 5595 0.969894 GGGAGTCCCGATCACTATGG 59.030 60.000 13.89 0.00 32.13 2.74
4288 5606 0.179045 CATGTCATTCCGGGAGTCCC 60.179 60.000 19.37 19.37 41.09 4.46
4289 5607 0.830648 TCATGTCATTCCGGGAGTCC 59.169 55.000 0.00 0.00 0.00 3.85
4290 5608 2.691409 TTCATGTCATTCCGGGAGTC 57.309 50.000 0.00 0.00 0.00 3.36
4291 5609 2.774234 AGATTCATGTCATTCCGGGAGT 59.226 45.455 0.00 0.00 0.00 3.85
4292 5610 3.482156 AGATTCATGTCATTCCGGGAG 57.518 47.619 0.00 0.00 0.00 4.30
4293 5611 6.874278 ATATAGATTCATGTCATTCCGGGA 57.126 37.500 0.00 0.00 0.00 5.14
4294 5612 9.618890 AATTATATAGATTCATGTCATTCCGGG 57.381 33.333 0.00 0.00 0.00 5.73
4327 5645 2.167693 GTCCCGATCACTATGGTTGTGA 59.832 50.000 0.00 0.00 46.58 3.58
4349 5667 6.874278 ATATAGATTCATGTCATTCCGGGA 57.126 37.500 0.00 0.00 0.00 5.14
4350 5668 9.618890 AATTATATAGATTCATGTCATTCCGGG 57.381 33.333 0.00 0.00 0.00 5.73
4371 5689 9.308000 TCACTATGGTTGTGAAAGGAAAATTAT 57.692 29.630 0.00 0.00 40.89 1.28
4372 5690 8.698973 TCACTATGGTTGTGAAAGGAAAATTA 57.301 30.769 0.00 0.00 40.89 1.40
4373 5691 7.595819 TCACTATGGTTGTGAAAGGAAAATT 57.404 32.000 0.00 0.00 40.89 1.82
4374 5692 7.362056 CGATCACTATGGTTGTGAAAGGAAAAT 60.362 37.037 0.66 0.00 45.82 1.82
4375 5693 6.072728 CGATCACTATGGTTGTGAAAGGAAAA 60.073 38.462 0.66 0.00 45.82 2.29
4376 5694 5.411361 CGATCACTATGGTTGTGAAAGGAAA 59.589 40.000 0.66 0.00 45.82 3.13
4377 5695 4.935205 CGATCACTATGGTTGTGAAAGGAA 59.065 41.667 0.66 0.00 45.82 3.36
4378 5696 4.503910 CGATCACTATGGTTGTGAAAGGA 58.496 43.478 0.66 0.00 45.82 3.36
4379 5697 3.623060 CCGATCACTATGGTTGTGAAAGG 59.377 47.826 0.66 4.18 45.82 3.11
4380 5698 3.623060 CCCGATCACTATGGTTGTGAAAG 59.377 47.826 0.66 0.00 45.82 2.62
4381 5699 3.262151 TCCCGATCACTATGGTTGTGAAA 59.738 43.478 0.66 0.00 45.82 2.69
4382 5700 2.835156 TCCCGATCACTATGGTTGTGAA 59.165 45.455 0.66 0.00 45.82 3.18
4383 5701 2.167693 GTCCCGATCACTATGGTTGTGA 59.832 50.000 0.00 0.00 46.58 3.58
4384 5702 2.168521 AGTCCCGATCACTATGGTTGTG 59.831 50.000 0.00 0.00 36.82 3.33
4385 5703 2.431057 GAGTCCCGATCACTATGGTTGT 59.569 50.000 0.00 0.00 0.00 3.32
4386 5704 2.224066 GGAGTCCCGATCACTATGGTTG 60.224 54.545 0.00 0.00 0.00 3.77
4387 5705 2.040178 GGAGTCCCGATCACTATGGTT 58.960 52.381 0.00 0.00 0.00 3.67
4388 5706 1.705873 GGAGTCCCGATCACTATGGT 58.294 55.000 0.00 0.00 0.00 3.55
4389 5707 0.969894 GGGAGTCCCGATCACTATGG 59.030 60.000 13.89 0.00 32.13 2.74
4400 5718 2.499685 CGTCATTCCGGGAGTCCC 59.500 66.667 19.37 19.37 41.09 4.46
4401 5719 2.202892 GCGTCATTCCGGGAGTCC 60.203 66.667 0.00 0.00 0.00 3.85
4402 5720 2.202892 GGCGTCATTCCGGGAGTC 60.203 66.667 0.00 0.00 0.00 3.36
4403 5721 4.143333 CGGCGTCATTCCGGGAGT 62.143 66.667 0.00 0.00 42.99 3.85
4404 5722 3.833645 TCGGCGTCATTCCGGGAG 61.834 66.667 6.85 0.00 46.43 4.30
4408 5726 2.710297 GATGAAGTCGGCGTCATTCCG 61.710 57.143 19.28 0.00 42.36 4.30
4416 5736 1.933853 CCCTTTTAGATGAAGTCGGCG 59.066 52.381 0.00 0.00 0.00 6.46
4434 5754 2.180432 AGCGTAGACAAACTTTCCCC 57.820 50.000 0.00 0.00 0.00 4.81
4438 5758 5.462398 CAGTCAACTAGCGTAGACAAACTTT 59.538 40.000 0.00 0.00 33.56 2.66
4441 5761 4.543692 TCAGTCAACTAGCGTAGACAAAC 58.456 43.478 0.00 0.00 33.56 2.93
4442 5762 4.841443 TCAGTCAACTAGCGTAGACAAA 57.159 40.909 0.00 0.00 33.56 2.83
4445 5765 3.919197 GGTTTCAGTCAACTAGCGTAGAC 59.081 47.826 0.00 0.00 0.00 2.59
4446 5766 3.365666 CGGTTTCAGTCAACTAGCGTAGA 60.366 47.826 0.00 0.00 0.00 2.59
4447 5767 2.915463 CGGTTTCAGTCAACTAGCGTAG 59.085 50.000 0.00 0.00 0.00 3.51
4448 5768 2.923605 GCGGTTTCAGTCAACTAGCGTA 60.924 50.000 5.30 0.00 32.84 4.42
4449 5769 1.779569 CGGTTTCAGTCAACTAGCGT 58.220 50.000 0.00 0.00 0.00 5.07
4450 5770 0.438830 GCGGTTTCAGTCAACTAGCG 59.561 55.000 0.00 0.00 0.00 4.26
4469 5791 4.437794 CGACATCCAACATGAGAAATGTGG 60.438 45.833 0.00 2.07 31.80 4.17
4509 5831 1.542987 GGACTAGTCGATCGGGTAGCT 60.543 57.143 16.41 8.50 0.00 3.32
4547 5877 0.661020 CGTCGAACAAAAAGGGTGCT 59.339 50.000 0.00 0.00 0.00 4.40
4557 5887 2.702898 TTCCGTGTATCGTCGAACAA 57.297 45.000 0.00 0.00 37.94 2.83
4597 5927 2.608752 GCATGGCCTTTCTTGTGTCTTG 60.609 50.000 3.32 0.00 0.00 3.02
4730 6060 1.529796 CACCCCGCTTATTAGGCCA 59.470 57.895 5.01 0.00 0.00 5.36
4731 6061 1.228154 CCACCCCGCTTATTAGGCC 60.228 63.158 0.00 0.00 0.00 5.19
4732 6062 1.897137 GCCACCCCGCTTATTAGGC 60.897 63.158 0.00 0.00 0.00 3.93
4733 6063 0.110486 ATGCCACCCCGCTTATTAGG 59.890 55.000 0.00 0.00 0.00 2.69
4806 6141 1.866853 CGGAGGCTTTGGGTTGCTTC 61.867 60.000 0.00 0.00 35.05 3.86



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.