Multiple sequence alignment - TraesCS6A01G274900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G274900 chr6A 100.000 3645 0 0 1 3645 501790776 501794420 0.000000e+00 6732
1 TraesCS6A01G274900 chr6A 90.654 214 16 3 260 469 384090284 384090071 7.710000e-72 281
2 TraesCS6A01G274900 chr6A 90.909 209 17 2 261 467 112562389 112562597 2.770000e-71 279
3 TraesCS6A01G274900 chr6A 89.151 212 18 4 261 468 592358713 592358923 3.610000e-65 259
4 TraesCS6A01G274900 chr6A 85.276 163 17 6 469 626 86279803 86279963 1.050000e-35 161
5 TraesCS6A01G274900 chr6D 92.356 2224 83 28 1450 3643 360681279 360683445 0.000000e+00 3085
6 TraesCS6A01G274900 chr6D 92.400 750 35 11 646 1387 360680447 360681182 0.000000e+00 1050
7 TraesCS6A01G274900 chr6D 91.469 211 18 0 12 222 1600819 1600609 1.280000e-74 291
8 TraesCS6A01G274900 chr6D 90.367 218 20 1 6 223 77830954 77831170 5.960000e-73 285
9 TraesCS6A01G274900 chr6D 90.233 215 21 0 6 220 343675341 343675555 7.710000e-72 281
10 TraesCS6A01G274900 chr6D 86.364 154 11 8 471 619 436721260 436721112 3.770000e-35 159
11 TraesCS6A01G274900 chr6B 91.504 1589 70 33 683 2239 542223275 542224830 0.000000e+00 2126
12 TraesCS6A01G274900 chr6B 92.992 1327 52 23 2329 3645 542224897 542226192 0.000000e+00 1897
13 TraesCS6A01G274900 chr5D 85.268 801 72 22 1449 2238 458777238 458778003 0.000000e+00 784
14 TraesCS6A01G274900 chr5D 81.854 507 50 24 2329 2815 458778034 458778518 4.410000e-104 388
15 TraesCS6A01G274900 chr5D 85.526 228 25 8 2955 3180 458778613 458778834 7.870000e-57 231
16 TraesCS6A01G274900 chr5B 92.688 465 33 1 1449 1912 562452612 562453076 0.000000e+00 669
17 TraesCS6A01G274900 chr5B 90.446 157 14 1 2329 2485 562454532 562454687 4.770000e-49 206
18 TraesCS6A01G274900 chr5B 86.538 156 14 6 469 619 622203054 622203207 8.100000e-37 165
19 TraesCS6A01G274900 chr5B 80.000 245 27 11 2571 2815 562456252 562456474 1.050000e-35 161
20 TraesCS6A01G274900 chr5B 98.438 64 1 0 1928 1991 562453068 562453131 2.970000e-21 113
21 TraesCS6A01G274900 chr2D 91.163 215 19 0 6 220 103027109 103027323 3.560000e-75 292
22 TraesCS6A01G274900 chr2A 91.509 212 16 2 12 222 570734016 570733806 1.280000e-74 291
23 TraesCS6A01G274900 chr7A 91.469 211 15 3 261 468 300473083 300472873 1.660000e-73 287
24 TraesCS6A01G274900 chr7A 89.401 217 23 0 7 223 720349831 720349615 1.290000e-69 274
25 TraesCS6A01G274900 chr7A 89.041 219 23 1 5 223 89627597 89627380 1.670000e-68 270
26 TraesCS6A01G274900 chr7A 89.524 210 20 2 260 467 257364540 257364331 7.760000e-67 265
27 TraesCS6A01G274900 chr7A 89.151 212 20 3 259 467 91513421 91513632 1.000000e-65 261
28 TraesCS6A01G274900 chr7A 88.837 215 18 6 257 467 75204882 75205094 3.610000e-65 259
29 TraesCS6A01G274900 chr7A 84.756 164 25 0 1201 1364 203042071 203041908 8.100000e-37 165
30 TraesCS6A01G274900 chr3D 90.698 215 20 0 9 223 470720898 470721112 1.660000e-73 287
31 TraesCS6A01G274900 chr1A 88.991 218 24 0 7 224 266899166 266898949 1.670000e-68 270
32 TraesCS6A01G274900 chr5A 89.573 211 19 3 261 468 326431606 326431816 7.760000e-67 265
33 TraesCS6A01G274900 chr5A 88.128 219 22 4 260 474 643565894 643565676 1.300000e-64 257
34 TraesCS6A01G274900 chr5A 85.802 162 12 7 454 610 520699247 520699092 1.050000e-35 161
35 TraesCS6A01G274900 chr3A 88.608 158 8 10 469 619 472910896 472910742 2.240000e-42 183
36 TraesCS6A01G274900 chr3A 85.897 156 14 7 469 619 747729100 747729252 3.770000e-35 159
37 TraesCS6A01G274900 chr7B 86.538 156 14 6 469 619 609728789 609728942 8.100000e-37 165
38 TraesCS6A01G274900 chr7B 83.626 171 28 0 1194 1364 157219387 157219217 1.050000e-35 161
39 TraesCS6A01G274900 chr3B 85.806 155 18 4 469 619 247502407 247502253 1.050000e-35 161
40 TraesCS6A01G274900 chrUn 85.256 156 17 5 469 619 171112597 171112443 4.870000e-34 156
41 TraesCS6A01G274900 chr7D 81.250 192 35 1 1194 1385 193587051 193586861 1.750000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G274900 chr6A 501790776 501794420 3644 False 6732.000000 6732 100.000 1 3645 1 chr6A.!!$F3 3644
1 TraesCS6A01G274900 chr6D 360680447 360683445 2998 False 2067.500000 3085 92.378 646 3643 2 chr6D.!!$F3 2997
2 TraesCS6A01G274900 chr6B 542223275 542226192 2917 False 2011.500000 2126 92.248 683 3645 2 chr6B.!!$F1 2962
3 TraesCS6A01G274900 chr5D 458777238 458778834 1596 False 467.666667 784 84.216 1449 3180 3 chr5D.!!$F1 1731
4 TraesCS6A01G274900 chr5B 562452612 562456474 3862 False 287.250000 669 90.393 1449 2815 4 chr5B.!!$F2 1366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 501 0.031111 TCCCTTCCCATCTCATCCGT 60.031 55.0 0.00 0.00 0.0 4.69 F
1011 1028 0.037447 TGTCGTCCATGGCCATGAAA 59.963 50.0 41.32 27.55 41.2 2.69 F
2240 3472 0.039035 AACTCCGGTCTGCTCTCTCT 59.961 55.0 0.00 0.00 0.0 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 3455 0.107214 AGAGAGAGAGCAGACCGGAG 60.107 60.0 9.46 0.0 0.0 4.63 R
2518 4985 0.036010 ACCTCAGCTGCACCACATAC 60.036 55.0 9.47 0.0 0.0 2.39 R
3624 6374 1.981256 TTTGAGAACCTGGAACTGCC 58.019 50.0 0.00 0.0 37.1 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.230245 CTGGGGCGCCAAAACCAA 61.230 61.111 30.85 9.75 31.63 3.67
52 53 3.225069 CTGGGGCGCCAAAACCAAG 62.225 63.158 30.85 15.13 31.63 3.61
53 54 4.002506 GGGGCGCCAAAACCAAGG 62.003 66.667 30.85 0.00 0.00 3.61
58 59 2.050442 GCCAAAACCAAGGCGACG 60.050 61.111 0.00 0.00 41.70 5.12
59 60 2.642700 CCAAAACCAAGGCGACGG 59.357 61.111 0.00 0.00 0.00 4.79
60 61 2.050442 CAAAACCAAGGCGACGGC 60.050 61.111 14.41 14.41 38.90 5.68
61 62 2.517402 AAAACCAAGGCGACGGCA 60.517 55.556 24.23 0.00 42.47 5.69
62 63 1.901464 AAAACCAAGGCGACGGCAT 60.901 52.632 24.23 9.07 42.47 4.40
63 64 2.141122 AAAACCAAGGCGACGGCATG 62.141 55.000 24.23 21.18 42.47 4.06
64 65 3.545124 AACCAAGGCGACGGCATGA 62.545 57.895 25.60 0.00 42.47 3.07
65 66 2.514592 CCAAGGCGACGGCATGAT 60.515 61.111 25.60 5.77 42.47 2.45
66 67 2.537560 CCAAGGCGACGGCATGATC 61.538 63.158 25.60 0.00 42.47 2.92
67 68 1.522355 CAAGGCGACGGCATGATCT 60.522 57.895 24.23 0.00 42.47 2.75
68 69 0.249447 CAAGGCGACGGCATGATCTA 60.249 55.000 24.23 0.00 42.47 1.98
69 70 0.464036 AAGGCGACGGCATGATCTAA 59.536 50.000 24.23 0.00 42.47 2.10
70 71 0.464036 AGGCGACGGCATGATCTAAA 59.536 50.000 24.23 0.00 42.47 1.85
71 72 1.134521 AGGCGACGGCATGATCTAAAA 60.135 47.619 24.23 0.00 42.47 1.52
72 73 1.003866 GGCGACGGCATGATCTAAAAC 60.004 52.381 17.49 0.00 42.47 2.43
73 74 1.332028 GCGACGGCATGATCTAAAACG 60.332 52.381 0.00 0.00 39.62 3.60
74 75 1.332028 CGACGGCATGATCTAAAACGC 60.332 52.381 0.00 0.00 0.00 4.84
75 76 0.650512 ACGGCATGATCTAAAACGCG 59.349 50.000 3.53 3.53 0.00 6.01
76 77 0.654472 CGGCATGATCTAAAACGCGC 60.654 55.000 5.73 0.00 0.00 6.86
77 78 0.317020 GGCATGATCTAAAACGCGCC 60.317 55.000 5.73 0.00 0.00 6.53
78 79 0.317020 GCATGATCTAAAACGCGCCC 60.317 55.000 5.73 0.00 0.00 6.13
79 80 0.042188 CATGATCTAAAACGCGCCCG 60.042 55.000 5.73 0.00 41.14 6.13
80 81 1.157870 ATGATCTAAAACGCGCCCGG 61.158 55.000 5.73 0.00 39.22 5.73
81 82 1.812507 GATCTAAAACGCGCCCGGT 60.813 57.895 5.73 0.00 39.22 5.28
82 83 1.759293 GATCTAAAACGCGCCCGGTC 61.759 60.000 5.73 0.00 39.22 4.79
83 84 2.510064 ATCTAAAACGCGCCCGGTCA 62.510 55.000 5.73 0.00 39.22 4.02
84 85 2.047083 TAAAACGCGCCCGGTCAT 60.047 55.556 5.73 0.00 39.22 3.06
85 86 2.304516 CTAAAACGCGCCCGGTCATG 62.305 60.000 5.73 0.00 39.22 3.07
86 87 2.783241 TAAAACGCGCCCGGTCATGA 62.783 55.000 5.73 0.00 39.22 3.07
87 88 4.690719 AACGCGCCCGGTCATGAA 62.691 61.111 5.73 0.00 39.22 2.57
88 89 4.690719 ACGCGCCCGGTCATGAAA 62.691 61.111 5.73 0.00 39.22 2.69
89 90 3.202001 CGCGCCCGGTCATGAAAT 61.202 61.111 0.00 0.00 0.00 2.17
91 92 3.110139 CGCCCGGTCATGAAATGG 58.890 61.111 0.00 0.00 46.73 3.16
92 93 2.480610 CGCCCGGTCATGAAATGGG 61.481 63.158 19.23 19.23 46.73 4.00
93 94 1.379843 GCCCGGTCATGAAATGGGT 60.380 57.895 22.51 0.00 46.73 4.51
94 95 1.384222 GCCCGGTCATGAAATGGGTC 61.384 60.000 22.51 14.39 46.73 4.46
95 96 1.095228 CCCGGTCATGAAATGGGTCG 61.095 60.000 16.50 5.07 46.73 4.79
96 97 1.095228 CCGGTCATGAAATGGGTCGG 61.095 60.000 0.00 0.00 46.73 4.79
97 98 1.714899 CGGTCATGAAATGGGTCGGC 61.715 60.000 0.00 0.00 46.73 5.54
98 99 1.384222 GGTCATGAAATGGGTCGGCC 61.384 60.000 0.00 0.00 46.73 6.13
121 122 3.910490 GGCGCACTGGCAACCAAA 61.910 61.111 10.83 0.00 44.08 3.28
122 123 2.105930 GCGCACTGGCAACCAAAA 59.894 55.556 0.30 0.00 41.24 2.44
123 124 1.520342 GCGCACTGGCAACCAAAAA 60.520 52.632 0.30 0.00 41.24 1.94
124 125 0.879839 GCGCACTGGCAACCAAAAAT 60.880 50.000 0.30 0.00 41.24 1.82
125 126 1.580815 CGCACTGGCAACCAAAAATT 58.419 45.000 0.00 0.00 41.24 1.82
126 127 2.748605 CGCACTGGCAACCAAAAATTA 58.251 42.857 0.00 0.00 41.24 1.40
127 128 3.126831 CGCACTGGCAACCAAAAATTAA 58.873 40.909 0.00 0.00 41.24 1.40
128 129 3.557595 CGCACTGGCAACCAAAAATTAAA 59.442 39.130 0.00 0.00 41.24 1.52
129 130 4.034510 CGCACTGGCAACCAAAAATTAAAA 59.965 37.500 0.00 0.00 41.24 1.52
130 131 5.509771 GCACTGGCAACCAAAAATTAAAAG 58.490 37.500 0.00 0.00 40.72 2.27
131 132 5.295540 GCACTGGCAACCAAAAATTAAAAGA 59.704 36.000 0.00 0.00 40.72 2.52
132 133 6.511605 GCACTGGCAACCAAAAATTAAAAGAG 60.512 38.462 0.00 0.00 40.72 2.85
133 134 6.018016 CACTGGCAACCAAAAATTAAAAGAGG 60.018 38.462 0.00 0.00 30.80 3.69
134 135 5.372373 TGGCAACCAAAAATTAAAAGAGGG 58.628 37.500 0.00 0.00 0.00 4.30
135 136 4.215399 GGCAACCAAAAATTAAAAGAGGGC 59.785 41.667 0.00 0.00 0.00 5.19
136 137 4.084066 GCAACCAAAAATTAAAAGAGGGCG 60.084 41.667 0.00 0.00 0.00 6.13
137 138 4.265904 ACCAAAAATTAAAAGAGGGCGG 57.734 40.909 0.00 0.00 0.00 6.13
138 139 3.898741 ACCAAAAATTAAAAGAGGGCGGA 59.101 39.130 0.00 0.00 0.00 5.54
139 140 4.242475 CCAAAAATTAAAAGAGGGCGGAC 58.758 43.478 0.00 0.00 0.00 4.79
140 141 4.262249 CCAAAAATTAAAAGAGGGCGGACA 60.262 41.667 0.00 0.00 0.00 4.02
141 142 4.783764 AAAATTAAAAGAGGGCGGACAG 57.216 40.909 0.00 0.00 0.00 3.51
167 168 3.719144 CGGCCGACCCAAACGAAC 61.719 66.667 24.07 0.00 0.00 3.95
168 169 2.592287 GGCCGACCCAAACGAACA 60.592 61.111 0.00 0.00 0.00 3.18
169 170 2.188161 GGCCGACCCAAACGAACAA 61.188 57.895 0.00 0.00 0.00 2.83
170 171 1.726533 GGCCGACCCAAACGAACAAA 61.727 55.000 0.00 0.00 0.00 2.83
171 172 0.100861 GCCGACCCAAACGAACAAAA 59.899 50.000 0.00 0.00 0.00 2.44
172 173 1.469423 GCCGACCCAAACGAACAAAAA 60.469 47.619 0.00 0.00 0.00 1.94
191 192 2.250190 CGGACAAAAACGCCGTCC 59.750 61.111 0.00 0.00 44.79 4.79
192 193 3.423179 GGACAAAAACGCCGTCCA 58.577 55.556 2.98 0.00 46.98 4.02
193 194 1.953772 GGACAAAAACGCCGTCCAT 59.046 52.632 2.98 0.00 46.98 3.41
194 195 0.312729 GGACAAAAACGCCGTCCATT 59.687 50.000 2.98 0.00 46.98 3.16
195 196 1.269361 GGACAAAAACGCCGTCCATTT 60.269 47.619 2.98 0.00 46.98 2.32
196 197 1.784283 GACAAAAACGCCGTCCATTTG 59.216 47.619 16.50 16.50 37.10 2.32
197 198 1.135867 CAAAAACGCCGTCCATTTGG 58.864 50.000 12.49 0.00 0.00 3.28
198 199 0.032815 AAAAACGCCGTCCATTTGGG 59.967 50.000 0.00 0.00 35.41 4.12
199 200 1.110518 AAAACGCCGTCCATTTGGGT 61.111 50.000 0.00 0.00 38.11 4.51
200 201 1.520600 AAACGCCGTCCATTTGGGTC 61.521 55.000 0.00 0.00 38.11 4.46
201 202 3.496131 CGCCGTCCATTTGGGTCG 61.496 66.667 0.00 2.92 46.01 4.79
204 205 3.131478 CGTCCATTTGGGTCGGCC 61.131 66.667 0.00 0.00 43.28 6.13
214 215 2.355115 GGTCGGCCCATTGGAGTT 59.645 61.111 3.62 0.00 0.00 3.01
215 216 2.046285 GGTCGGCCCATTGGAGTTG 61.046 63.158 3.62 0.00 0.00 3.16
216 217 2.361104 TCGGCCCATTGGAGTTGC 60.361 61.111 3.62 0.00 0.00 4.17
217 218 2.361610 CGGCCCATTGGAGTTGCT 60.362 61.111 3.62 0.00 0.00 3.91
218 219 2.409870 CGGCCCATTGGAGTTGCTC 61.410 63.158 3.62 0.00 0.00 4.26
219 220 1.000396 GGCCCATTGGAGTTGCTCT 60.000 57.895 3.62 0.00 0.00 4.09
220 221 0.255890 GGCCCATTGGAGTTGCTCTA 59.744 55.000 3.62 0.00 0.00 2.43
221 222 1.340991 GGCCCATTGGAGTTGCTCTAA 60.341 52.381 3.62 0.00 35.57 2.10
222 223 2.019984 GCCCATTGGAGTTGCTCTAAG 58.980 52.381 3.62 0.00 34.66 2.18
223 224 2.019984 CCCATTGGAGTTGCTCTAAGC 58.980 52.381 3.62 0.00 42.82 3.09
224 225 1.667724 CCATTGGAGTTGCTCTAAGCG 59.332 52.381 0.00 0.00 46.26 4.68
225 226 1.063174 CATTGGAGTTGCTCTAAGCGC 59.937 52.381 0.00 0.00 46.26 5.92
226 227 0.673644 TTGGAGTTGCTCTAAGCGCC 60.674 55.000 2.29 0.00 46.26 6.53
227 228 1.815840 GGAGTTGCTCTAAGCGCCC 60.816 63.158 2.29 0.00 46.26 6.13
228 229 2.125512 AGTTGCTCTAAGCGCCCG 60.126 61.111 2.29 0.00 46.26 6.13
229 230 2.434359 GTTGCTCTAAGCGCCCGT 60.434 61.111 2.29 0.00 46.26 5.28
230 231 2.434185 TTGCTCTAAGCGCCCGTG 60.434 61.111 2.29 0.00 46.26 4.94
253 254 3.712881 GCGCCACGTCCAGTTCAC 61.713 66.667 0.00 0.00 0.00 3.18
254 255 2.029073 CGCCACGTCCAGTTCACT 59.971 61.111 0.00 0.00 0.00 3.41
255 256 2.022129 CGCCACGTCCAGTTCACTC 61.022 63.158 0.00 0.00 0.00 3.51
256 257 2.022129 GCCACGTCCAGTTCACTCG 61.022 63.158 0.00 0.00 0.00 4.18
257 258 2.022129 CCACGTCCAGTTCACTCGC 61.022 63.158 0.00 0.00 0.00 5.03
258 259 2.050351 ACGTCCAGTTCACTCGCG 60.050 61.111 0.00 0.00 0.00 5.87
259 260 3.470567 CGTCCAGTTCACTCGCGC 61.471 66.667 0.00 0.00 0.00 6.86
260 261 3.470567 GTCCAGTTCACTCGCGCG 61.471 66.667 26.76 26.76 0.00 6.86
261 262 4.717629 TCCAGTTCACTCGCGCGG 62.718 66.667 31.69 22.52 0.00 6.46
262 263 4.717629 CCAGTTCACTCGCGCGGA 62.718 66.667 31.69 17.07 0.00 5.54
263 264 2.507102 CAGTTCACTCGCGCGGAT 60.507 61.111 31.69 15.96 0.00 4.18
264 265 2.507102 AGTTCACTCGCGCGGATG 60.507 61.111 31.69 26.56 0.00 3.51
265 266 2.506217 GTTCACTCGCGCGGATGA 60.506 61.111 31.69 28.35 0.00 2.92
266 267 2.202610 TTCACTCGCGCGGATGAG 60.203 61.111 31.69 22.03 38.21 2.90
267 268 2.696759 TTCACTCGCGCGGATGAGA 61.697 57.895 31.69 19.96 36.11 3.27
268 269 2.867333 TTCACTCGCGCGGATGAGAC 62.867 60.000 31.69 0.00 36.11 3.36
269 270 3.134792 ACTCGCGCGGATGAGACT 61.135 61.111 31.69 1.38 36.11 3.24
270 271 2.103143 CTCGCGCGGATGAGACTT 59.897 61.111 31.69 0.00 34.04 3.01
271 272 2.202610 TCGCGCGGATGAGACTTG 60.203 61.111 31.69 0.00 0.00 3.16
272 273 3.918220 CGCGCGGATGAGACTTGC 61.918 66.667 24.84 0.00 0.00 4.01
273 274 3.567797 GCGCGGATGAGACTTGCC 61.568 66.667 8.83 0.00 0.00 4.52
274 275 2.185350 CGCGGATGAGACTTGCCT 59.815 61.111 0.00 0.00 0.00 4.75
275 276 2.169789 CGCGGATGAGACTTGCCTG 61.170 63.158 0.00 0.00 0.00 4.85
276 277 2.467826 GCGGATGAGACTTGCCTGC 61.468 63.158 0.00 0.00 0.00 4.85
277 278 1.220206 CGGATGAGACTTGCCTGCT 59.780 57.895 0.00 0.00 0.00 4.24
278 279 0.809241 CGGATGAGACTTGCCTGCTC 60.809 60.000 0.00 0.00 0.00 4.26
279 280 0.463474 GGATGAGACTTGCCTGCTCC 60.463 60.000 0.00 0.00 0.00 4.70
280 281 0.540923 GATGAGACTTGCCTGCTCCT 59.459 55.000 0.00 0.00 0.00 3.69
281 282 0.540923 ATGAGACTTGCCTGCTCCTC 59.459 55.000 0.00 0.00 0.00 3.71
282 283 1.220477 GAGACTTGCCTGCTCCTCC 59.780 63.158 0.00 0.00 0.00 4.30
283 284 1.537397 AGACTTGCCTGCTCCTCCA 60.537 57.895 0.00 0.00 0.00 3.86
284 285 1.078567 GACTTGCCTGCTCCTCCAG 60.079 63.158 0.00 0.00 0.00 3.86
316 317 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
317 318 4.830765 GCTCCCGCATACGTGGCA 62.831 66.667 13.38 0.00 41.87 4.92
318 319 2.108976 CTCCCGCATACGTGGCAT 59.891 61.111 13.38 0.00 41.87 4.40
319 320 2.203001 TCCCGCATACGTGGCATG 60.203 61.111 4.87 4.87 41.87 4.06
320 321 2.203001 CCCGCATACGTGGCATGA 60.203 61.111 14.82 0.00 41.87 3.07
321 322 1.597854 CCCGCATACGTGGCATGAT 60.598 57.895 14.82 0.00 41.87 2.45
322 323 1.165907 CCCGCATACGTGGCATGATT 61.166 55.000 14.82 0.00 41.87 2.57
323 324 0.662619 CCGCATACGTGGCATGATTT 59.337 50.000 14.82 0.00 35.59 2.17
324 325 1.597690 CCGCATACGTGGCATGATTTG 60.598 52.381 14.82 8.58 35.59 2.32
325 326 1.330213 CGCATACGTGGCATGATTTGA 59.670 47.619 14.82 0.00 33.53 2.69
326 327 2.031769 CGCATACGTGGCATGATTTGAT 60.032 45.455 14.82 0.00 33.53 2.57
327 328 3.548616 CGCATACGTGGCATGATTTGATT 60.549 43.478 14.82 0.00 33.53 2.57
328 329 3.732219 GCATACGTGGCATGATTTGATTG 59.268 43.478 14.82 1.54 0.00 2.67
329 330 2.945447 ACGTGGCATGATTTGATTGG 57.055 45.000 14.82 0.00 0.00 3.16
330 331 2.445427 ACGTGGCATGATTTGATTGGA 58.555 42.857 14.82 0.00 0.00 3.53
331 332 2.824936 ACGTGGCATGATTTGATTGGAA 59.175 40.909 14.82 0.00 0.00 3.53
332 333 3.181397 CGTGGCATGATTTGATTGGAAC 58.819 45.455 0.00 0.00 0.00 3.62
333 334 3.367190 CGTGGCATGATTTGATTGGAACA 60.367 43.478 0.00 0.00 0.00 3.18
348 349 3.161866 TGGAACAAAATAAGACCTGGCC 58.838 45.455 0.00 0.00 31.92 5.36
349 350 2.496070 GGAACAAAATAAGACCTGGCCC 59.504 50.000 0.00 0.00 0.00 5.80
350 351 2.990740 ACAAAATAAGACCTGGCCCA 57.009 45.000 0.00 0.00 0.00 5.36
351 352 3.473113 ACAAAATAAGACCTGGCCCAT 57.527 42.857 0.00 0.00 0.00 4.00
352 353 3.365472 ACAAAATAAGACCTGGCCCATC 58.635 45.455 0.00 0.00 0.00 3.51
353 354 3.245586 ACAAAATAAGACCTGGCCCATCA 60.246 43.478 0.00 0.00 0.00 3.07
354 355 2.736670 AATAAGACCTGGCCCATCAC 57.263 50.000 0.00 0.00 0.00 3.06
355 356 1.898863 ATAAGACCTGGCCCATCACT 58.101 50.000 0.00 0.00 0.00 3.41
356 357 1.668826 TAAGACCTGGCCCATCACTT 58.331 50.000 0.00 2.39 0.00 3.16
357 358 0.038744 AAGACCTGGCCCATCACTTG 59.961 55.000 0.00 0.00 0.00 3.16
358 359 0.842030 AGACCTGGCCCATCACTTGA 60.842 55.000 0.00 0.00 0.00 3.02
359 360 0.038166 GACCTGGCCCATCACTTGAA 59.962 55.000 0.00 0.00 0.00 2.69
360 361 0.482446 ACCTGGCCCATCACTTGAAA 59.518 50.000 0.00 0.00 0.00 2.69
361 362 1.077663 ACCTGGCCCATCACTTGAAAT 59.922 47.619 0.00 0.00 0.00 2.17
362 363 1.753073 CCTGGCCCATCACTTGAAATC 59.247 52.381 0.00 0.00 0.00 2.17
363 364 2.449464 CTGGCCCATCACTTGAAATCA 58.551 47.619 0.00 0.00 0.00 2.57
364 365 2.426024 CTGGCCCATCACTTGAAATCAG 59.574 50.000 0.00 0.00 0.00 2.90
365 366 1.753073 GGCCCATCACTTGAAATCAGG 59.247 52.381 0.00 0.00 0.00 3.86
366 367 2.621407 GGCCCATCACTTGAAATCAGGA 60.621 50.000 0.00 0.00 0.00 3.86
367 368 2.686915 GCCCATCACTTGAAATCAGGAG 59.313 50.000 0.00 0.00 0.00 3.69
368 369 3.285484 CCCATCACTTGAAATCAGGAGG 58.715 50.000 0.00 0.00 0.00 4.30
369 370 3.054139 CCCATCACTTGAAATCAGGAGGA 60.054 47.826 0.00 0.00 0.00 3.71
370 371 4.197750 CCATCACTTGAAATCAGGAGGAG 58.802 47.826 0.00 0.00 0.00 3.69
371 372 4.080695 CCATCACTTGAAATCAGGAGGAGA 60.081 45.833 0.00 0.00 0.00 3.71
372 373 5.397672 CCATCACTTGAAATCAGGAGGAGAT 60.398 44.000 0.00 0.00 0.00 2.75
373 374 5.095145 TCACTTGAAATCAGGAGGAGATG 57.905 43.478 0.00 0.00 0.00 2.90
374 375 4.779489 TCACTTGAAATCAGGAGGAGATGA 59.221 41.667 0.00 0.00 0.00 2.92
375 376 5.427806 TCACTTGAAATCAGGAGGAGATGAT 59.572 40.000 0.00 0.00 37.77 2.45
376 377 6.069789 TCACTTGAAATCAGGAGGAGATGATT 60.070 38.462 0.00 0.00 45.67 2.57
377 378 7.126268 TCACTTGAAATCAGGAGGAGATGATTA 59.874 37.037 0.00 0.00 43.56 1.75
378 379 7.441760 CACTTGAAATCAGGAGGAGATGATTAG 59.558 40.741 0.00 0.00 43.56 1.73
379 380 7.346698 ACTTGAAATCAGGAGGAGATGATTAGA 59.653 37.037 0.00 0.00 43.56 2.10
380 381 7.868792 TGAAATCAGGAGGAGATGATTAGAT 57.131 36.000 1.20 0.00 43.56 1.98
381 382 8.272659 TGAAATCAGGAGGAGATGATTAGATT 57.727 34.615 1.20 0.00 43.56 2.40
382 383 9.384849 TGAAATCAGGAGGAGATGATTAGATTA 57.615 33.333 1.20 0.00 43.56 1.75
418 419 9.920946 AAAATAAAAAGACAGCCATAGGATAGA 57.079 29.630 0.00 0.00 0.00 1.98
419 420 9.566432 AAATAAAAAGACAGCCATAGGATAGAG 57.434 33.333 0.00 0.00 0.00 2.43
420 421 6.567602 AAAAAGACAGCCATAGGATAGAGT 57.432 37.500 0.00 0.00 0.00 3.24
421 422 5.543507 AAAGACAGCCATAGGATAGAGTG 57.456 43.478 0.00 0.00 0.00 3.51
422 423 3.505386 AGACAGCCATAGGATAGAGTGG 58.495 50.000 0.00 0.00 34.84 4.00
423 424 2.564947 GACAGCCATAGGATAGAGTGGG 59.435 54.545 0.00 0.00 32.35 4.61
424 425 2.180086 ACAGCCATAGGATAGAGTGGGA 59.820 50.000 0.00 0.00 32.35 4.37
425 426 2.830923 CAGCCATAGGATAGAGTGGGAG 59.169 54.545 0.00 0.00 32.35 4.30
426 427 1.552792 GCCATAGGATAGAGTGGGAGC 59.447 57.143 0.00 0.00 32.35 4.70
427 428 2.894731 CCATAGGATAGAGTGGGAGCA 58.105 52.381 0.00 0.00 0.00 4.26
428 429 2.564947 CCATAGGATAGAGTGGGAGCAC 59.435 54.545 0.00 0.00 0.00 4.40
429 430 1.982660 TAGGATAGAGTGGGAGCACG 58.017 55.000 0.00 0.00 0.00 5.34
430 431 0.757188 AGGATAGAGTGGGAGCACGG 60.757 60.000 0.00 0.00 0.00 4.94
431 432 0.755698 GGATAGAGTGGGAGCACGGA 60.756 60.000 0.00 0.00 0.00 4.69
432 433 1.333177 GATAGAGTGGGAGCACGGAT 58.667 55.000 0.00 0.00 0.00 4.18
433 434 1.000283 GATAGAGTGGGAGCACGGATG 60.000 57.143 0.00 0.00 0.00 3.51
434 435 1.043116 TAGAGTGGGAGCACGGATGG 61.043 60.000 0.00 0.00 0.00 3.51
435 436 3.391665 GAGTGGGAGCACGGATGGG 62.392 68.421 0.00 0.00 0.00 4.00
436 437 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
437 438 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
438 439 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
439 440 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
440 441 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
441 442 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
442 443 2.190313 GCACGGATGGGAGCATGA 59.810 61.111 0.00 0.00 0.00 3.07
443 444 1.451927 GCACGGATGGGAGCATGAA 60.452 57.895 0.00 0.00 0.00 2.57
444 445 1.442526 GCACGGATGGGAGCATGAAG 61.443 60.000 0.00 0.00 0.00 3.02
445 446 0.178767 CACGGATGGGAGCATGAAGA 59.821 55.000 0.00 0.00 0.00 2.87
446 447 0.467384 ACGGATGGGAGCATGAAGAG 59.533 55.000 0.00 0.00 0.00 2.85
447 448 0.250209 CGGATGGGAGCATGAAGAGG 60.250 60.000 0.00 0.00 0.00 3.69
448 449 0.110104 GGATGGGAGCATGAAGAGGG 59.890 60.000 0.00 0.00 0.00 4.30
449 450 1.135094 GATGGGAGCATGAAGAGGGA 58.865 55.000 0.00 0.00 0.00 4.20
450 451 1.072015 GATGGGAGCATGAAGAGGGAG 59.928 57.143 0.00 0.00 0.00 4.30
451 452 1.148048 GGGAGCATGAAGAGGGAGC 59.852 63.158 0.00 0.00 0.00 4.70
452 453 1.630126 GGGAGCATGAAGAGGGAGCA 61.630 60.000 0.00 0.00 0.00 4.26
453 454 0.179051 GGAGCATGAAGAGGGAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
454 455 0.179051 GAGCATGAAGAGGGAGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
455 456 1.823041 GCATGAAGAGGGAGCAGGC 60.823 63.158 0.00 0.00 32.07 4.85
456 457 1.605992 CATGAAGAGGGAGCAGGCA 59.394 57.895 0.00 0.00 0.00 4.75
457 458 0.034767 CATGAAGAGGGAGCAGGCAA 60.035 55.000 0.00 0.00 0.00 4.52
458 459 0.255318 ATGAAGAGGGAGCAGGCAAG 59.745 55.000 0.00 0.00 0.00 4.01
459 460 1.748500 GAAGAGGGAGCAGGCAAGC 60.749 63.158 0.00 0.00 0.00 4.01
460 461 3.279504 AAGAGGGAGCAGGCAAGCC 62.280 63.158 2.02 2.02 34.23 4.35
464 465 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
465 466 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
466 467 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
486 487 4.729918 CGGCTTGCCTGCTCCCTT 62.730 66.667 10.12 0.00 0.00 3.95
487 488 2.753446 GGCTTGCCTGCTCCCTTC 60.753 66.667 4.11 0.00 0.00 3.46
488 489 2.753446 GCTTGCCTGCTCCCTTCC 60.753 66.667 0.00 0.00 0.00 3.46
489 490 2.044551 CTTGCCTGCTCCCTTCCC 60.045 66.667 0.00 0.00 0.00 3.97
490 491 2.858476 TTGCCTGCTCCCTTCCCA 60.858 61.111 0.00 0.00 0.00 4.37
491 492 2.220786 CTTGCCTGCTCCCTTCCCAT 62.221 60.000 0.00 0.00 0.00 4.00
492 493 2.194326 GCCTGCTCCCTTCCCATC 59.806 66.667 0.00 0.00 0.00 3.51
493 494 2.381941 GCCTGCTCCCTTCCCATCT 61.382 63.158 0.00 0.00 0.00 2.90
494 495 1.835693 CCTGCTCCCTTCCCATCTC 59.164 63.158 0.00 0.00 0.00 2.75
495 496 0.984961 CCTGCTCCCTTCCCATCTCA 60.985 60.000 0.00 0.00 0.00 3.27
496 497 1.138568 CTGCTCCCTTCCCATCTCAT 58.861 55.000 0.00 0.00 0.00 2.90
497 498 1.072015 CTGCTCCCTTCCCATCTCATC 59.928 57.143 0.00 0.00 0.00 2.92
498 499 0.399833 GCTCCCTTCCCATCTCATCC 59.600 60.000 0.00 0.00 0.00 3.51
499 500 0.683973 CTCCCTTCCCATCTCATCCG 59.316 60.000 0.00 0.00 0.00 4.18
500 501 0.031111 TCCCTTCCCATCTCATCCGT 60.031 55.000 0.00 0.00 0.00 4.69
501 502 0.107456 CCCTTCCCATCTCATCCGTG 59.893 60.000 0.00 0.00 0.00 4.94
502 503 0.533755 CCTTCCCATCTCATCCGTGC 60.534 60.000 0.00 0.00 0.00 5.34
503 504 0.467384 CTTCCCATCTCATCCGTGCT 59.533 55.000 0.00 0.00 0.00 4.40
504 505 0.465705 TTCCCATCTCATCCGTGCTC 59.534 55.000 0.00 0.00 0.00 4.26
505 506 1.070445 CCCATCTCATCCGTGCTCC 59.930 63.158 0.00 0.00 0.00 4.70
506 507 1.070445 CCATCTCATCCGTGCTCCC 59.930 63.158 0.00 0.00 0.00 4.30
507 508 1.689243 CCATCTCATCCGTGCTCCCA 61.689 60.000 0.00 0.00 0.00 4.37
508 509 0.531532 CATCTCATCCGTGCTCCCAC 60.532 60.000 0.00 0.00 38.62 4.61
509 510 0.689080 ATCTCATCCGTGCTCCCACT 60.689 55.000 0.00 0.00 39.86 4.00
510 511 0.904865 TCTCATCCGTGCTCCCACTT 60.905 55.000 0.00 0.00 39.86 3.16
511 512 0.460987 CTCATCCGTGCTCCCACTTC 60.461 60.000 0.00 0.00 39.86 3.01
512 513 1.191489 TCATCCGTGCTCCCACTTCA 61.191 55.000 0.00 0.00 39.86 3.02
513 514 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
514 515 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
515 516 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
516 517 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
517 518 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
518 519 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
519 520 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
520 521 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
521 522 1.486211 CTCCCACTTCATCCTACGGT 58.514 55.000 0.00 0.00 0.00 4.83
522 523 1.831736 CTCCCACTTCATCCTACGGTT 59.168 52.381 0.00 0.00 0.00 4.44
523 524 1.553248 TCCCACTTCATCCTACGGTTG 59.447 52.381 0.00 0.00 0.00 3.77
524 525 1.278127 CCCACTTCATCCTACGGTTGT 59.722 52.381 0.00 0.00 0.00 3.32
525 526 2.290071 CCCACTTCATCCTACGGTTGTT 60.290 50.000 0.00 0.00 0.00 2.83
526 527 3.408634 CCACTTCATCCTACGGTTGTTT 58.591 45.455 0.00 0.00 0.00 2.83
527 528 3.818773 CCACTTCATCCTACGGTTGTTTT 59.181 43.478 0.00 0.00 0.00 2.43
528 529 4.277423 CCACTTCATCCTACGGTTGTTTTT 59.723 41.667 0.00 0.00 0.00 1.94
564 565 8.472007 TTCTTTCTAGTCTAATCATCTCCTCC 57.528 38.462 0.00 0.00 0.00 4.30
565 566 7.587258 TCTTTCTAGTCTAATCATCTCCTCCA 58.413 38.462 0.00 0.00 0.00 3.86
566 567 7.504238 TCTTTCTAGTCTAATCATCTCCTCCAC 59.496 40.741 0.00 0.00 0.00 4.02
567 568 5.636123 TCTAGTCTAATCATCTCCTCCACC 58.364 45.833 0.00 0.00 0.00 4.61
568 569 3.226777 AGTCTAATCATCTCCTCCACCG 58.773 50.000 0.00 0.00 0.00 4.94
569 570 3.117474 AGTCTAATCATCTCCTCCACCGA 60.117 47.826 0.00 0.00 0.00 4.69
570 571 3.829601 GTCTAATCATCTCCTCCACCGAT 59.170 47.826 0.00 0.00 0.00 4.18
571 572 4.282195 GTCTAATCATCTCCTCCACCGATT 59.718 45.833 0.00 0.00 0.00 3.34
572 573 4.901849 TCTAATCATCTCCTCCACCGATTT 59.098 41.667 0.00 0.00 0.00 2.17
573 574 2.988010 TCATCTCCTCCACCGATTTG 57.012 50.000 0.00 0.00 0.00 2.32
574 575 2.466846 TCATCTCCTCCACCGATTTGA 58.533 47.619 0.00 0.00 0.00 2.69
575 576 2.837591 TCATCTCCTCCACCGATTTGAA 59.162 45.455 0.00 0.00 0.00 2.69
576 577 3.118629 TCATCTCCTCCACCGATTTGAAG 60.119 47.826 0.00 0.00 0.00 3.02
577 578 1.555075 TCTCCTCCACCGATTTGAAGG 59.445 52.381 0.00 0.00 0.00 3.46
578 579 1.555075 CTCCTCCACCGATTTGAAGGA 59.445 52.381 0.00 0.00 0.00 3.36
579 580 1.982226 TCCTCCACCGATTTGAAGGAA 59.018 47.619 0.00 0.00 0.00 3.36
580 581 2.576191 TCCTCCACCGATTTGAAGGAAT 59.424 45.455 0.00 0.00 0.00 3.01
581 582 2.684881 CCTCCACCGATTTGAAGGAATG 59.315 50.000 0.00 0.00 0.00 2.67
582 583 2.684881 CTCCACCGATTTGAAGGAATGG 59.315 50.000 0.00 0.00 0.00 3.16
583 584 1.750778 CCACCGATTTGAAGGAATGGG 59.249 52.381 0.00 0.00 39.82 4.00
584 585 2.620367 CCACCGATTTGAAGGAATGGGA 60.620 50.000 5.79 0.00 37.14 4.37
585 586 2.423538 CACCGATTTGAAGGAATGGGAC 59.576 50.000 5.79 0.00 37.14 4.46
586 587 1.670811 CCGATTTGAAGGAATGGGACG 59.329 52.381 0.00 0.00 37.14 4.79
587 588 2.627945 CGATTTGAAGGAATGGGACGA 58.372 47.619 0.00 0.00 0.00 4.20
588 589 3.206150 CGATTTGAAGGAATGGGACGAT 58.794 45.455 0.00 0.00 0.00 3.73
589 590 3.627577 CGATTTGAAGGAATGGGACGATT 59.372 43.478 0.00 0.00 0.00 3.34
590 591 4.096382 CGATTTGAAGGAATGGGACGATTT 59.904 41.667 0.00 0.00 0.00 2.17
591 592 5.393027 CGATTTGAAGGAATGGGACGATTTT 60.393 40.000 0.00 0.00 0.00 1.82
592 593 5.799827 TTTGAAGGAATGGGACGATTTTT 57.200 34.783 0.00 0.00 0.00 1.94
593 594 6.902771 TTTGAAGGAATGGGACGATTTTTA 57.097 33.333 0.00 0.00 0.00 1.52
594 595 7.475137 TTTGAAGGAATGGGACGATTTTTAT 57.525 32.000 0.00 0.00 0.00 1.40
595 596 7.475137 TTGAAGGAATGGGACGATTTTTATT 57.525 32.000 0.00 0.00 0.00 1.40
596 597 7.475137 TGAAGGAATGGGACGATTTTTATTT 57.525 32.000 0.00 0.00 0.00 1.40
597 598 7.902087 TGAAGGAATGGGACGATTTTTATTTT 58.098 30.769 0.00 0.00 0.00 1.82
598 599 7.816995 TGAAGGAATGGGACGATTTTTATTTTG 59.183 33.333 0.00 0.00 0.00 2.44
599 600 7.239763 AGGAATGGGACGATTTTTATTTTGT 57.760 32.000 0.00 0.00 0.00 2.83
600 601 7.676004 AGGAATGGGACGATTTTTATTTTGTT 58.324 30.769 0.00 0.00 0.00 2.83
601 602 7.817478 AGGAATGGGACGATTTTTATTTTGTTC 59.183 33.333 0.00 0.00 0.00 3.18
602 603 7.064134 GGAATGGGACGATTTTTATTTTGTTCC 59.936 37.037 0.00 0.00 0.00 3.62
603 604 6.406692 TGGGACGATTTTTATTTTGTTCCA 57.593 33.333 0.00 0.00 32.65 3.53
604 605 6.817184 TGGGACGATTTTTATTTTGTTCCAA 58.183 32.000 0.00 0.00 32.17 3.53
605 606 7.445945 TGGGACGATTTTTATTTTGTTCCAAT 58.554 30.769 0.00 0.00 32.17 3.16
606 607 7.600752 TGGGACGATTTTTATTTTGTTCCAATC 59.399 33.333 0.00 0.00 32.17 2.67
607 608 7.600752 GGGACGATTTTTATTTTGTTCCAATCA 59.399 33.333 0.00 0.00 0.00 2.57
608 609 8.983724 GGACGATTTTTATTTTGTTCCAATCAA 58.016 29.630 0.00 0.00 0.00 2.57
618 619 7.769272 TTTTGTTCCAATCAAATCAAGACAC 57.231 32.000 0.00 0.00 35.25 3.67
619 620 6.462552 TTGTTCCAATCAAATCAAGACACA 57.537 33.333 0.00 0.00 0.00 3.72
620 621 6.075762 TGTTCCAATCAAATCAAGACACAG 57.924 37.500 0.00 0.00 0.00 3.66
621 622 5.827267 TGTTCCAATCAAATCAAGACACAGA 59.173 36.000 0.00 0.00 0.00 3.41
622 623 5.947228 TCCAATCAAATCAAGACACAGAC 57.053 39.130 0.00 0.00 0.00 3.51
623 624 5.375773 TCCAATCAAATCAAGACACAGACA 58.624 37.500 0.00 0.00 0.00 3.41
624 625 5.239306 TCCAATCAAATCAAGACACAGACAC 59.761 40.000 0.00 0.00 0.00 3.67
625 626 4.997905 ATCAAATCAAGACACAGACACG 57.002 40.909 0.00 0.00 0.00 4.49
626 627 3.792401 TCAAATCAAGACACAGACACGT 58.208 40.909 0.00 0.00 0.00 4.49
627 628 4.939271 TCAAATCAAGACACAGACACGTA 58.061 39.130 0.00 0.00 0.00 3.57
628 629 5.538118 TCAAATCAAGACACAGACACGTAT 58.462 37.500 0.00 0.00 0.00 3.06
629 630 5.405269 TCAAATCAAGACACAGACACGTATG 59.595 40.000 0.00 0.00 0.00 2.39
630 631 4.783764 ATCAAGACACAGACACGTATGA 57.216 40.909 0.00 0.00 0.00 2.15
631 632 3.897325 TCAAGACACAGACACGTATGAC 58.103 45.455 0.00 0.00 0.00 3.06
662 663 4.445545 CTCTTTTGCCGTCGCGCC 62.446 66.667 0.00 0.00 38.08 6.53
725 726 2.541588 CCGGCTGCTATTTTTGATTCCG 60.542 50.000 0.00 0.00 0.00 4.30
726 727 2.463876 GGCTGCTATTTTTGATTCCGC 58.536 47.619 0.00 0.00 0.00 5.54
727 728 2.463876 GCTGCTATTTTTGATTCCGCC 58.536 47.619 0.00 0.00 0.00 6.13
728 729 2.799562 GCTGCTATTTTTGATTCCGCCC 60.800 50.000 0.00 0.00 0.00 6.13
729 730 2.426738 CTGCTATTTTTGATTCCGCCCA 59.573 45.455 0.00 0.00 0.00 5.36
807 813 5.587172 TGGAGAACCTACACTACAGTGAGC 61.587 50.000 16.05 0.00 41.64 4.26
859 865 1.739035 CGCCCCTATATATGTGCACCG 60.739 57.143 15.69 1.60 0.00 4.94
860 866 1.553248 GCCCCTATATATGTGCACCGA 59.447 52.381 15.69 1.70 0.00 4.69
903 910 2.262603 CCACTCGCAGCAGCAGTA 59.737 61.111 0.82 0.00 42.27 2.74
904 911 1.808799 CCACTCGCAGCAGCAGTAG 60.809 63.158 0.82 0.00 42.27 2.57
996 1013 4.032080 CGTCGTCGGTTACTGTCG 57.968 61.111 4.57 4.57 0.00 4.35
1010 1027 0.392863 CTGTCGTCCATGGCCATGAA 60.393 55.000 41.32 25.23 41.20 2.57
1011 1028 0.037447 TGTCGTCCATGGCCATGAAA 59.963 50.000 41.32 27.55 41.20 2.69
1045 1062 4.974438 TGGTCCGGGCCTTGGAGT 62.974 66.667 28.64 0.00 35.82 3.85
1077 1094 3.369052 CCAGGAGCCTTCATGTAACGTTA 60.369 47.826 3.29 3.29 33.37 3.18
1119 1136 2.425312 CCTCTAGATGCGTCTTGACACT 59.575 50.000 14.93 0.00 35.87 3.55
1154 1173 4.926832 ACACGTGAATTGTCGATCATGTTA 59.073 37.500 25.01 0.00 41.73 2.41
1163 1182 6.926280 TTGTCGATCATGTTAAAAATGTGC 57.074 33.333 0.00 0.00 0.00 4.57
1192 1211 5.300792 GGTGGGTTCATCTCTGTTTTGTTTA 59.699 40.000 0.00 0.00 0.00 2.01
1193 1212 6.206498 GTGGGTTCATCTCTGTTTTGTTTAC 58.794 40.000 0.00 0.00 0.00 2.01
1197 1216 6.413818 GGTTCATCTCTGTTTTGTTTACGTTG 59.586 38.462 0.00 0.00 0.00 4.10
1393 1412 2.626088 GGTCAGTCACCACGTACTAC 57.374 55.000 0.00 0.00 45.98 2.73
1394 1413 1.200948 GGTCAGTCACCACGTACTACC 59.799 57.143 0.00 0.00 45.98 3.18
1398 1417 0.109597 GTCACCACGTACTACCACGG 60.110 60.000 0.00 0.00 46.12 4.94
1401 1420 0.322456 ACCACGTACTACCACGGCTA 60.322 55.000 0.00 0.00 46.12 3.93
1405 1424 1.200020 ACGTACTACCACGGCTACAAC 59.800 52.381 0.00 0.00 46.12 3.32
1406 1425 1.199789 CGTACTACCACGGCTACAACA 59.800 52.381 0.00 0.00 38.26 3.33
1408 1427 3.674138 CGTACTACCACGGCTACAACATT 60.674 47.826 0.00 0.00 38.26 2.71
1409 1428 4.438608 CGTACTACCACGGCTACAACATTA 60.439 45.833 0.00 0.00 38.26 1.90
1410 1429 3.853475 ACTACCACGGCTACAACATTAC 58.147 45.455 0.00 0.00 0.00 1.89
1411 1430 1.717194 ACCACGGCTACAACATTACG 58.283 50.000 0.00 0.00 0.00 3.18
1412 1431 1.001181 ACCACGGCTACAACATTACGT 59.999 47.619 0.00 0.00 34.61 3.57
1413 1432 2.070783 CCACGGCTACAACATTACGTT 58.929 47.619 0.00 0.00 38.83 3.99
1414 1433 3.252400 CCACGGCTACAACATTACGTTA 58.748 45.455 0.00 0.00 35.52 3.18
1415 1434 3.061161 CCACGGCTACAACATTACGTTAC 59.939 47.826 0.00 0.00 35.52 2.50
1416 1435 2.916716 ACGGCTACAACATTACGTTACG 59.083 45.455 2.19 2.19 35.52 3.18
1418 1437 3.241426 CGGCTACAACATTACGTTACGTG 60.241 47.826 21.22 6.48 41.39 4.49
1420 1439 3.482436 GCTACAACATTACGTTACGTGCC 60.482 47.826 21.22 0.00 41.39 5.01
1425 1444 4.114058 ACATTACGTTACGTGCCACTAT 57.886 40.909 21.22 1.73 41.39 2.12
1426 1445 4.107622 ACATTACGTTACGTGCCACTATC 58.892 43.478 21.22 0.00 41.39 2.08
1431 1450 3.191162 ACGTTACGTGCCACTATCACTAA 59.809 43.478 10.39 0.00 39.18 2.24
1435 1454 1.133598 CGTGCCACTATCACTAACGGA 59.866 52.381 0.00 0.00 32.54 4.69
1436 1455 2.416296 CGTGCCACTATCACTAACGGAA 60.416 50.000 0.00 0.00 32.54 4.30
1651 1739 3.931247 ACGGGCAGCAACACGGTA 61.931 61.111 5.60 0.00 0.00 4.02
2020 2975 5.924475 AAATCACTACGAGAACCAACTTG 57.076 39.130 0.00 0.00 0.00 3.16
2021 2976 4.866508 ATCACTACGAGAACCAACTTGA 57.133 40.909 0.00 0.00 0.00 3.02
2022 2977 4.866508 TCACTACGAGAACCAACTTGAT 57.133 40.909 0.00 0.00 0.00 2.57
2023 2978 4.806330 TCACTACGAGAACCAACTTGATC 58.194 43.478 0.00 0.00 0.00 2.92
2064 3295 4.942483 CCATCTTGTGATTGCTTCTCTCTT 59.058 41.667 0.00 0.00 0.00 2.85
2066 3297 5.936686 TCTTGTGATTGCTTCTCTCTTTG 57.063 39.130 0.00 0.00 0.00 2.77
2068 3299 5.824624 TCTTGTGATTGCTTCTCTCTTTGTT 59.175 36.000 0.00 0.00 0.00 2.83
2076 3308 6.515272 TGCTTCTCTCTTTGTTTGTTCTTT 57.485 33.333 0.00 0.00 0.00 2.52
2167 3399 1.270826 CGTGGAGCGATCATGGATACT 59.729 52.381 1.84 0.00 44.77 2.12
2223 3455 3.585862 TCGCTGGTAAGAACAGATGAAC 58.414 45.455 0.00 0.00 38.20 3.18
2239 3471 0.454196 GAACTCCGGTCTGCTCTCTC 59.546 60.000 0.00 0.00 0.00 3.20
2240 3472 0.039035 AACTCCGGTCTGCTCTCTCT 59.961 55.000 0.00 0.00 0.00 3.10
2242 3474 0.107214 CTCCGGTCTGCTCTCTCTCT 60.107 60.000 0.00 0.00 0.00 3.10
2245 3477 1.299541 CGGTCTGCTCTCTCTCTCTC 58.700 60.000 0.00 0.00 0.00 3.20
2247 3479 2.565841 GGTCTGCTCTCTCTCTCTCTC 58.434 57.143 0.00 0.00 0.00 3.20
2253 3490 2.939103 GCTCTCTCTCTCTCTCTCACAC 59.061 54.545 0.00 0.00 0.00 3.82
2255 3492 3.935203 CTCTCTCTCTCTCTCTCACACAC 59.065 52.174 0.00 0.00 0.00 3.82
2259 3496 2.881513 TCTCTCTCTCTCACACACACAC 59.118 50.000 0.00 0.00 0.00 3.82
2299 3538 1.337384 TACACCCGCCATGCTCATCT 61.337 55.000 0.00 0.00 0.00 2.90
2303 3542 0.749091 CCCGCCATGCTCATCTTCAA 60.749 55.000 0.00 0.00 0.00 2.69
2308 3547 4.285292 CGCCATGCTCATCTTCAAATAAC 58.715 43.478 0.00 0.00 0.00 1.89
2309 3548 4.201940 CGCCATGCTCATCTTCAAATAACA 60.202 41.667 0.00 0.00 0.00 2.41
2310 3549 5.039333 GCCATGCTCATCTTCAAATAACAC 58.961 41.667 0.00 0.00 0.00 3.32
2316 3555 6.939730 TGCTCATCTTCAAATAACACTAACCA 59.060 34.615 0.00 0.00 0.00 3.67
2321 3560 9.612620 CATCTTCAAATAACACTAACCAGTTTC 57.387 33.333 0.00 0.00 30.46 2.78
2454 3706 1.379443 ATCGACGGCCAGGTCAGTA 60.379 57.895 2.24 0.00 36.73 2.74
2518 4985 3.181491 CCATGGCTAACCGGTAAACAATG 60.181 47.826 8.00 9.27 39.70 2.82
2687 5418 2.639286 CACGCTTGCACCAAGTCC 59.361 61.111 6.80 0.00 42.77 3.85
2688 5419 2.594592 ACGCTTGCACCAAGTCCC 60.595 61.111 6.80 0.00 42.77 4.46
2739 5471 1.904287 TAAAGATGCTTGGCCGTTGT 58.096 45.000 0.00 0.00 0.00 3.32
2820 5554 5.824904 TTCATTTGCTATCAGCTTCCTTC 57.175 39.130 0.00 0.00 42.97 3.46
2821 5555 4.847198 TCATTTGCTATCAGCTTCCTTCA 58.153 39.130 0.00 0.00 42.97 3.02
2830 5564 6.317391 GCTATCAGCTTCCTTCACTGTATTTT 59.683 38.462 0.00 0.00 38.45 1.82
2870 5604 6.018262 TGTCCTTCACTGTATTTCGTTTGAAG 60.018 38.462 0.00 0.00 39.67 3.02
2950 5696 8.125448 GCTCCTCATGATATTGTACTGAAAAAC 58.875 37.037 0.00 0.00 0.00 2.43
3018 5764 5.070001 CACCATAGAACCTTCAACTTTCCA 58.930 41.667 0.00 0.00 0.00 3.53
3023 5769 7.362401 CCATAGAACCTTCAACTTTCCAATGAG 60.362 40.741 0.00 0.00 0.00 2.90
3057 5803 6.874278 AGCAAGTATATATGTATGCCCAGA 57.126 37.500 12.20 0.00 34.44 3.86
3073 5820 3.152341 CCCAGACAGAAAGAAGCAACAT 58.848 45.455 0.00 0.00 0.00 2.71
3076 5823 4.458295 CCAGACAGAAAGAAGCAACATCAT 59.542 41.667 0.00 0.00 0.00 2.45
3154 5902 7.539034 AACAGAGTTTATGGCTAAATGGTTT 57.461 32.000 0.00 0.00 0.00 3.27
3156 5904 6.071391 ACAGAGTTTATGGCTAAATGGTTTGG 60.071 38.462 0.00 0.00 0.00 3.28
3157 5905 6.152661 CAGAGTTTATGGCTAAATGGTTTGGA 59.847 38.462 0.00 0.00 0.00 3.53
3170 5918 2.289444 TGGTTTGGACTACAGCACTAGC 60.289 50.000 0.00 0.00 42.56 3.42
3353 6102 5.122239 TCACTGCTTCCATCAAAGTAAATCG 59.878 40.000 0.00 0.00 0.00 3.34
3469 6218 0.242825 CCTTCTTGTCGTAGTGGCGA 59.757 55.000 0.00 0.00 38.68 5.54
3516 6265 5.659440 TCCTCCTGCAAATATTTTTCACC 57.341 39.130 0.00 0.00 0.00 4.02
3541 6290 6.956299 ATTCAAGTGAATAAAGTTGCATGC 57.044 33.333 11.82 11.82 42.48 4.06
3608 6358 6.286758 AGTGTGAATAGCAATGATCTCGAAT 58.713 36.000 0.00 0.00 0.00 3.34
3624 6374 8.470002 TGATCTCGAATACAGATAACCCATATG 58.530 37.037 0.00 0.00 30.30 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.225069 CTTGGTTTTGGCGCCCCAG 62.225 63.158 26.77 13.24 43.37 4.45
35 36 3.230245 CTTGGTTTTGGCGCCCCA 61.230 61.111 26.77 21.38 40.06 4.96
36 37 4.002506 CCTTGGTTTTGGCGCCCC 62.003 66.667 26.77 18.68 0.00 5.80
37 38 4.680237 GCCTTGGTTTTGGCGCCC 62.680 66.667 26.77 8.13 39.71 6.13
41 42 2.050442 CGTCGCCTTGGTTTTGGC 60.050 61.111 0.00 0.00 45.25 4.52
42 43 2.642700 CCGTCGCCTTGGTTTTGG 59.357 61.111 0.00 0.00 0.00 3.28
43 44 2.050442 GCCGTCGCCTTGGTTTTG 60.050 61.111 0.00 0.00 0.00 2.44
44 45 1.901464 ATGCCGTCGCCTTGGTTTT 60.901 52.632 0.00 0.00 0.00 2.43
45 46 2.282180 ATGCCGTCGCCTTGGTTT 60.282 55.556 0.00 0.00 0.00 3.27
46 47 2.819984 ATCATGCCGTCGCCTTGGTT 62.820 55.000 0.00 0.00 0.00 3.67
47 48 3.329542 ATCATGCCGTCGCCTTGGT 62.330 57.895 0.00 0.00 0.00 3.67
48 49 2.514592 ATCATGCCGTCGCCTTGG 60.515 61.111 0.00 0.00 0.00 3.61
49 50 0.249447 TAGATCATGCCGTCGCCTTG 60.249 55.000 0.00 0.00 0.00 3.61
50 51 0.464036 TTAGATCATGCCGTCGCCTT 59.536 50.000 0.00 0.00 0.00 4.35
51 52 0.464036 TTTAGATCATGCCGTCGCCT 59.536 50.000 0.00 0.00 0.00 5.52
52 53 1.003866 GTTTTAGATCATGCCGTCGCC 60.004 52.381 0.00 0.00 0.00 5.54
53 54 1.332028 CGTTTTAGATCATGCCGTCGC 60.332 52.381 0.00 0.00 0.00 5.19
54 55 1.332028 GCGTTTTAGATCATGCCGTCG 60.332 52.381 0.00 0.00 0.00 5.12
55 56 1.332028 CGCGTTTTAGATCATGCCGTC 60.332 52.381 0.00 0.00 0.00 4.79
56 57 0.650512 CGCGTTTTAGATCATGCCGT 59.349 50.000 0.00 0.00 0.00 5.68
57 58 0.654472 GCGCGTTTTAGATCATGCCG 60.654 55.000 8.43 0.00 0.00 5.69
58 59 0.317020 GGCGCGTTTTAGATCATGCC 60.317 55.000 8.43 0.00 0.00 4.40
59 60 0.317020 GGGCGCGTTTTAGATCATGC 60.317 55.000 8.43 0.00 0.00 4.06
60 61 0.042188 CGGGCGCGTTTTAGATCATG 60.042 55.000 15.94 0.00 0.00 3.07
61 62 1.157870 CCGGGCGCGTTTTAGATCAT 61.158 55.000 22.32 0.00 0.00 2.45
62 63 1.812093 CCGGGCGCGTTTTAGATCA 60.812 57.895 22.32 0.00 0.00 2.92
63 64 1.759293 GACCGGGCGCGTTTTAGATC 61.759 60.000 22.32 4.16 0.00 2.75
64 65 1.812507 GACCGGGCGCGTTTTAGAT 60.813 57.895 22.32 0.00 0.00 1.98
65 66 2.432972 GACCGGGCGCGTTTTAGA 60.433 61.111 22.32 0.00 0.00 2.10
66 67 2.104253 ATGACCGGGCGCGTTTTAG 61.104 57.895 22.32 8.59 0.00 1.85
67 68 2.047083 ATGACCGGGCGCGTTTTA 60.047 55.556 22.32 5.71 0.00 1.52
68 69 3.732892 CATGACCGGGCGCGTTTT 61.733 61.111 22.32 5.63 0.00 2.43
69 70 4.690719 TCATGACCGGGCGCGTTT 62.691 61.111 22.32 8.39 0.00 3.60
70 71 4.690719 TTCATGACCGGGCGCGTT 62.691 61.111 22.32 7.91 0.00 4.84
71 72 3.969250 ATTTCATGACCGGGCGCGT 62.969 57.895 22.32 10.10 0.00 6.01
72 73 3.202001 ATTTCATGACCGGGCGCG 61.202 61.111 17.31 17.31 0.00 6.86
73 74 2.408835 CATTTCATGACCGGGCGC 59.591 61.111 6.32 0.00 0.00 6.53
74 75 2.480610 CCCATTTCATGACCGGGCG 61.481 63.158 6.32 0.00 0.00 6.13
75 76 1.379843 ACCCATTTCATGACCGGGC 60.380 57.895 18.98 1.57 40.87 6.13
76 77 1.095228 CGACCCATTTCATGACCGGG 61.095 60.000 17.90 17.90 43.02 5.73
77 78 1.095228 CCGACCCATTTCATGACCGG 61.095 60.000 0.00 0.00 33.04 5.28
78 79 1.714899 GCCGACCCATTTCATGACCG 61.715 60.000 0.00 0.00 0.00 4.79
79 80 1.384222 GGCCGACCCATTTCATGACC 61.384 60.000 0.00 0.00 0.00 4.02
80 81 2.106844 GGCCGACCCATTTCATGAC 58.893 57.895 0.00 0.00 0.00 3.06
81 82 4.655921 GGCCGACCCATTTCATGA 57.344 55.556 0.00 0.00 0.00 3.07
100 101 4.645921 GTTGCCAGTGCGCCCAAC 62.646 66.667 4.18 7.06 41.78 3.77
104 105 2.914777 TTTTTGGTTGCCAGTGCGCC 62.915 55.000 4.18 0.00 41.78 6.53
105 106 0.879839 ATTTTTGGTTGCCAGTGCGC 60.880 50.000 0.00 0.00 41.78 6.09
106 107 1.580815 AATTTTTGGTTGCCAGTGCG 58.419 45.000 0.00 0.00 41.78 5.34
107 108 5.295540 TCTTTTAATTTTTGGTTGCCAGTGC 59.704 36.000 0.00 0.00 33.81 4.40
108 109 6.018016 CCTCTTTTAATTTTTGGTTGCCAGTG 60.018 38.462 0.00 0.00 33.81 3.66
109 110 6.054941 CCTCTTTTAATTTTTGGTTGCCAGT 58.945 36.000 0.00 0.00 33.81 4.00
110 111 5.469760 CCCTCTTTTAATTTTTGGTTGCCAG 59.530 40.000 0.00 0.00 33.81 4.85
111 112 5.372373 CCCTCTTTTAATTTTTGGTTGCCA 58.628 37.500 0.00 0.00 0.00 4.92
112 113 4.215399 GCCCTCTTTTAATTTTTGGTTGCC 59.785 41.667 0.00 0.00 0.00 4.52
113 114 4.084066 CGCCCTCTTTTAATTTTTGGTTGC 60.084 41.667 0.00 0.00 0.00 4.17
114 115 4.450757 CCGCCCTCTTTTAATTTTTGGTTG 59.549 41.667 0.00 0.00 0.00 3.77
115 116 4.345547 TCCGCCCTCTTTTAATTTTTGGTT 59.654 37.500 0.00 0.00 0.00 3.67
116 117 3.898741 TCCGCCCTCTTTTAATTTTTGGT 59.101 39.130 0.00 0.00 0.00 3.67
117 118 4.242475 GTCCGCCCTCTTTTAATTTTTGG 58.758 43.478 0.00 0.00 0.00 3.28
118 119 4.877282 TGTCCGCCCTCTTTTAATTTTTG 58.123 39.130 0.00 0.00 0.00 2.44
119 120 4.560716 GCTGTCCGCCCTCTTTTAATTTTT 60.561 41.667 0.00 0.00 0.00 1.94
120 121 3.056821 GCTGTCCGCCCTCTTTTAATTTT 60.057 43.478 0.00 0.00 0.00 1.82
121 122 2.492088 GCTGTCCGCCCTCTTTTAATTT 59.508 45.455 0.00 0.00 0.00 1.82
122 123 2.092323 GCTGTCCGCCCTCTTTTAATT 58.908 47.619 0.00 0.00 0.00 1.40
123 124 1.751437 GCTGTCCGCCCTCTTTTAAT 58.249 50.000 0.00 0.00 0.00 1.40
124 125 0.672401 CGCTGTCCGCCCTCTTTTAA 60.672 55.000 0.00 0.00 34.21 1.52
125 126 1.079405 CGCTGTCCGCCCTCTTTTA 60.079 57.895 0.00 0.00 34.21 1.52
126 127 2.358737 CGCTGTCCGCCCTCTTTT 60.359 61.111 0.00 0.00 34.21 2.27
127 128 4.394712 CCGCTGTCCGCCCTCTTT 62.395 66.667 0.00 0.00 35.03 2.52
150 151 3.719144 GTTCGTTTGGGTCGGCCG 61.719 66.667 22.12 22.12 34.97 6.13
151 152 1.726533 TTTGTTCGTTTGGGTCGGCC 61.727 55.000 0.00 0.00 0.00 6.13
152 153 0.100861 TTTTGTTCGTTTGGGTCGGC 59.899 50.000 0.00 0.00 0.00 5.54
153 154 2.563471 TTTTTGTTCGTTTGGGTCGG 57.437 45.000 0.00 0.00 0.00 4.79
169 170 1.270068 CGGCGTTTTTGTCCGTTTTT 58.730 45.000 0.00 0.00 38.47 1.94
170 171 2.946703 CGGCGTTTTTGTCCGTTTT 58.053 47.368 0.00 0.00 38.47 2.43
171 172 4.694102 CGGCGTTTTTGTCCGTTT 57.306 50.000 0.00 0.00 38.47 3.60
176 177 1.784283 CAAATGGACGGCGTTTTTGTC 59.216 47.619 23.82 9.81 0.00 3.18
177 178 1.537135 CCAAATGGACGGCGTTTTTGT 60.537 47.619 26.91 10.50 37.39 2.83
178 179 1.135867 CCAAATGGACGGCGTTTTTG 58.864 50.000 24.56 24.56 37.39 2.44
179 180 0.032815 CCCAAATGGACGGCGTTTTT 59.967 50.000 16.19 12.08 37.39 1.94
180 181 1.110518 ACCCAAATGGACGGCGTTTT 61.111 50.000 16.19 8.33 37.39 2.43
181 182 1.520600 GACCCAAATGGACGGCGTTT 61.521 55.000 16.19 0.70 37.39 3.60
182 183 1.969589 GACCCAAATGGACGGCGTT 60.970 57.895 16.19 0.00 37.39 4.84
183 184 2.359478 GACCCAAATGGACGGCGT 60.359 61.111 14.65 14.65 37.39 5.68
184 185 3.496131 CGACCCAAATGGACGGCG 61.496 66.667 4.80 4.80 46.53 6.46
197 198 2.046285 CAACTCCAATGGGCCGACC 61.046 63.158 0.00 0.00 40.81 4.79
198 199 2.700773 GCAACTCCAATGGGCCGAC 61.701 63.158 0.00 0.00 0.00 4.79
199 200 2.361104 GCAACTCCAATGGGCCGA 60.361 61.111 0.00 0.00 0.00 5.54
200 201 2.361610 AGCAACTCCAATGGGCCG 60.362 61.111 0.00 0.00 0.00 6.13
201 202 0.255890 TAGAGCAACTCCAATGGGCC 59.744 55.000 0.00 0.00 0.00 5.80
202 203 2.019984 CTTAGAGCAACTCCAATGGGC 58.980 52.381 0.00 0.00 0.00 5.36
203 204 2.019984 GCTTAGAGCAACTCCAATGGG 58.980 52.381 0.00 0.00 41.89 4.00
204 205 1.667724 CGCTTAGAGCAACTCCAATGG 59.332 52.381 0.00 0.00 42.58 3.16
205 206 1.063174 GCGCTTAGAGCAACTCCAATG 59.937 52.381 0.00 0.00 42.58 2.82
206 207 1.373570 GCGCTTAGAGCAACTCCAAT 58.626 50.000 0.00 0.00 42.58 3.16
207 208 0.673644 GGCGCTTAGAGCAACTCCAA 60.674 55.000 7.64 0.00 42.58 3.53
208 209 1.079127 GGCGCTTAGAGCAACTCCA 60.079 57.895 7.64 0.00 42.58 3.86
209 210 1.815840 GGGCGCTTAGAGCAACTCC 60.816 63.158 7.64 0.00 42.58 3.85
210 211 2.167861 CGGGCGCTTAGAGCAACTC 61.168 63.158 7.64 0.00 42.58 3.01
211 212 2.125512 CGGGCGCTTAGAGCAACT 60.126 61.111 7.64 0.00 42.58 3.16
212 213 2.434359 ACGGGCGCTTAGAGCAAC 60.434 61.111 7.64 1.16 42.58 4.17
213 214 2.434185 CACGGGCGCTTAGAGCAA 60.434 61.111 7.64 0.00 42.58 3.91
236 237 3.712881 GTGAACTGGACGTGGCGC 61.713 66.667 0.00 0.00 0.00 6.53
237 238 2.022129 GAGTGAACTGGACGTGGCG 61.022 63.158 0.00 0.00 0.00 5.69
238 239 2.022129 CGAGTGAACTGGACGTGGC 61.022 63.158 0.00 0.00 0.00 5.01
239 240 2.022129 GCGAGTGAACTGGACGTGG 61.022 63.158 0.00 0.00 0.00 4.94
240 241 2.365068 CGCGAGTGAACTGGACGTG 61.365 63.158 0.00 0.00 0.00 4.49
241 242 2.050351 CGCGAGTGAACTGGACGT 60.050 61.111 0.00 0.00 0.00 4.34
242 243 3.470567 GCGCGAGTGAACTGGACG 61.471 66.667 12.10 1.66 0.00 4.79
243 244 3.470567 CGCGCGAGTGAACTGGAC 61.471 66.667 28.94 0.00 46.66 4.02
244 245 4.717629 CCGCGCGAGTGAACTGGA 62.718 66.667 34.63 0.00 46.66 3.86
245 246 3.989698 ATCCGCGCGAGTGAACTGG 62.990 63.158 34.63 11.36 46.66 4.00
246 247 2.507102 ATCCGCGCGAGTGAACTG 60.507 61.111 34.63 12.20 46.66 3.16
247 248 2.507102 CATCCGCGCGAGTGAACT 60.507 61.111 34.63 2.76 46.66 3.01
248 249 2.506217 TCATCCGCGCGAGTGAAC 60.506 61.111 34.63 0.00 46.66 3.18
249 250 2.202610 CTCATCCGCGCGAGTGAA 60.203 61.111 34.63 16.49 46.66 3.18
250 251 3.131478 TCTCATCCGCGCGAGTGA 61.131 61.111 34.63 29.83 46.66 3.41
251 252 2.874010 AAGTCTCATCCGCGCGAGTG 62.874 60.000 34.63 27.44 42.41 3.51
252 253 2.701780 AAGTCTCATCCGCGCGAGT 61.702 57.895 34.63 16.89 0.00 4.18
253 254 2.103143 AAGTCTCATCCGCGCGAG 59.897 61.111 34.63 21.08 0.00 5.03
254 255 2.202610 CAAGTCTCATCCGCGCGA 60.203 61.111 34.63 18.26 0.00 5.87
255 256 3.918220 GCAAGTCTCATCCGCGCG 61.918 66.667 25.67 25.67 0.00 6.86
256 257 3.567797 GGCAAGTCTCATCCGCGC 61.568 66.667 0.00 0.00 0.00 6.86
257 258 2.169789 CAGGCAAGTCTCATCCGCG 61.170 63.158 0.00 0.00 0.00 6.46
258 259 2.467826 GCAGGCAAGTCTCATCCGC 61.468 63.158 0.00 0.00 0.00 5.54
259 260 0.809241 GAGCAGGCAAGTCTCATCCG 60.809 60.000 0.00 0.00 0.00 4.18
260 261 0.463474 GGAGCAGGCAAGTCTCATCC 60.463 60.000 0.00 0.00 0.00 3.51
261 262 0.540923 AGGAGCAGGCAAGTCTCATC 59.459 55.000 0.00 0.00 0.00 2.92
262 263 0.540923 GAGGAGCAGGCAAGTCTCAT 59.459 55.000 0.00 0.00 0.00 2.90
263 264 1.548357 GGAGGAGCAGGCAAGTCTCA 61.548 60.000 0.00 0.00 0.00 3.27
264 265 1.220477 GGAGGAGCAGGCAAGTCTC 59.780 63.158 0.00 0.00 0.00 3.36
265 266 1.537397 TGGAGGAGCAGGCAAGTCT 60.537 57.895 0.00 0.00 0.00 3.24
266 267 1.078567 CTGGAGGAGCAGGCAAGTC 60.079 63.158 0.00 0.00 0.00 3.01
267 268 3.076092 CTGGAGGAGCAGGCAAGT 58.924 61.111 0.00 0.00 0.00 3.16
301 302 2.108976 ATGCCACGTATGCGGGAG 59.891 61.111 7.15 0.00 45.97 4.30
302 303 2.038814 ATCATGCCACGTATGCGGGA 62.039 55.000 7.15 5.28 45.97 5.14
303 304 1.165907 AATCATGCCACGTATGCGGG 61.166 55.000 8.39 2.48 43.45 6.13
304 305 0.662619 AAATCATGCCACGTATGCGG 59.337 50.000 8.39 0.00 43.45 5.69
305 306 1.330213 TCAAATCATGCCACGTATGCG 59.670 47.619 0.19 0.19 44.93 4.73
306 307 3.631145 ATCAAATCATGCCACGTATGC 57.369 42.857 2.46 2.46 0.00 3.14
307 308 4.036616 TCCAATCAAATCATGCCACGTATG 59.963 41.667 0.00 0.00 0.00 2.39
308 309 4.206375 TCCAATCAAATCATGCCACGTAT 58.794 39.130 0.00 0.00 0.00 3.06
309 310 3.615155 TCCAATCAAATCATGCCACGTA 58.385 40.909 0.00 0.00 0.00 3.57
310 311 2.445427 TCCAATCAAATCATGCCACGT 58.555 42.857 0.00 0.00 0.00 4.49
311 312 3.181397 GTTCCAATCAAATCATGCCACG 58.819 45.455 0.00 0.00 0.00 4.94
312 313 4.191033 TGTTCCAATCAAATCATGCCAC 57.809 40.909 0.00 0.00 0.00 5.01
313 314 4.886496 TTGTTCCAATCAAATCATGCCA 57.114 36.364 0.00 0.00 0.00 4.92
314 315 6.746745 ATTTTGTTCCAATCAAATCATGCC 57.253 33.333 0.00 0.00 35.25 4.40
315 316 9.153721 TCTTATTTTGTTCCAATCAAATCATGC 57.846 29.630 0.00 0.00 35.25 4.06
317 318 9.657419 GGTCTTATTTTGTTCCAATCAAATCAT 57.343 29.630 0.00 0.00 35.25 2.45
318 319 8.869109 AGGTCTTATTTTGTTCCAATCAAATCA 58.131 29.630 0.00 0.00 35.25 2.57
319 320 9.143631 CAGGTCTTATTTTGTTCCAATCAAATC 57.856 33.333 0.00 0.00 35.25 2.17
320 321 8.096414 CCAGGTCTTATTTTGTTCCAATCAAAT 58.904 33.333 0.00 0.00 35.25 2.32
321 322 7.441017 CCAGGTCTTATTTTGTTCCAATCAAA 58.559 34.615 0.00 0.00 33.76 2.69
322 323 6.518200 GCCAGGTCTTATTTTGTTCCAATCAA 60.518 38.462 0.00 0.00 0.00 2.57
323 324 5.047377 GCCAGGTCTTATTTTGTTCCAATCA 60.047 40.000 0.00 0.00 0.00 2.57
324 325 5.410924 GCCAGGTCTTATTTTGTTCCAATC 58.589 41.667 0.00 0.00 0.00 2.67
325 326 4.222810 GGCCAGGTCTTATTTTGTTCCAAT 59.777 41.667 0.00 0.00 0.00 3.16
326 327 3.576550 GGCCAGGTCTTATTTTGTTCCAA 59.423 43.478 0.00 0.00 0.00 3.53
327 328 3.161866 GGCCAGGTCTTATTTTGTTCCA 58.838 45.455 0.00 0.00 0.00 3.53
328 329 2.496070 GGGCCAGGTCTTATTTTGTTCC 59.504 50.000 4.39 0.00 0.00 3.62
329 330 3.161866 TGGGCCAGGTCTTATTTTGTTC 58.838 45.455 0.00 0.00 0.00 3.18
330 331 3.252554 TGGGCCAGGTCTTATTTTGTT 57.747 42.857 0.00 0.00 0.00 2.83
331 332 2.990740 TGGGCCAGGTCTTATTTTGT 57.009 45.000 0.00 0.00 0.00 2.83
332 333 3.131046 GTGATGGGCCAGGTCTTATTTTG 59.869 47.826 13.78 0.00 0.00 2.44
333 334 3.011708 AGTGATGGGCCAGGTCTTATTTT 59.988 43.478 13.78 0.00 0.00 1.82
334 335 2.582636 AGTGATGGGCCAGGTCTTATTT 59.417 45.455 13.78 0.00 0.00 1.40
335 336 2.208872 AGTGATGGGCCAGGTCTTATT 58.791 47.619 13.78 0.00 0.00 1.40
336 337 1.898863 AGTGATGGGCCAGGTCTTAT 58.101 50.000 13.78 0.00 0.00 1.73
337 338 1.281867 CAAGTGATGGGCCAGGTCTTA 59.718 52.381 13.78 0.00 0.00 2.10
338 339 0.038744 CAAGTGATGGGCCAGGTCTT 59.961 55.000 13.78 12.71 0.00 3.01
339 340 0.842030 TCAAGTGATGGGCCAGGTCT 60.842 55.000 13.78 6.85 0.00 3.85
340 341 0.038166 TTCAAGTGATGGGCCAGGTC 59.962 55.000 13.78 6.24 0.00 3.85
341 342 0.482446 TTTCAAGTGATGGGCCAGGT 59.518 50.000 13.78 0.00 0.00 4.00
342 343 1.753073 GATTTCAAGTGATGGGCCAGG 59.247 52.381 13.78 0.00 0.00 4.45
343 344 2.426024 CTGATTTCAAGTGATGGGCCAG 59.574 50.000 13.78 0.00 0.00 4.85
344 345 2.449464 CTGATTTCAAGTGATGGGCCA 58.551 47.619 9.61 9.61 0.00 5.36
345 346 1.753073 CCTGATTTCAAGTGATGGGCC 59.247 52.381 0.00 0.00 0.00 5.80
346 347 2.686915 CTCCTGATTTCAAGTGATGGGC 59.313 50.000 0.00 0.00 0.00 5.36
347 348 3.054139 TCCTCCTGATTTCAAGTGATGGG 60.054 47.826 0.00 0.00 0.00 4.00
348 349 4.080695 TCTCCTCCTGATTTCAAGTGATGG 60.081 45.833 0.00 0.00 0.00 3.51
349 350 5.095145 TCTCCTCCTGATTTCAAGTGATG 57.905 43.478 0.00 0.00 0.00 3.07
350 351 5.427806 TCATCTCCTCCTGATTTCAAGTGAT 59.572 40.000 0.00 0.00 0.00 3.06
351 352 4.779489 TCATCTCCTCCTGATTTCAAGTGA 59.221 41.667 0.00 0.00 0.00 3.41
352 353 5.095145 TCATCTCCTCCTGATTTCAAGTG 57.905 43.478 0.00 0.00 0.00 3.16
353 354 5.972327 ATCATCTCCTCCTGATTTCAAGT 57.028 39.130 0.00 0.00 0.00 3.16
354 355 7.733969 TCTAATCATCTCCTCCTGATTTCAAG 58.266 38.462 3.40 0.00 41.22 3.02
355 356 7.681259 TCTAATCATCTCCTCCTGATTTCAA 57.319 36.000 3.40 0.00 41.22 2.69
356 357 7.868792 ATCTAATCATCTCCTCCTGATTTCA 57.131 36.000 3.40 0.00 41.22 2.69
392 393 9.920946 TCTATCCTATGGCTGTCTTTTTATTTT 57.079 29.630 0.00 0.00 0.00 1.82
393 394 9.566432 CTCTATCCTATGGCTGTCTTTTTATTT 57.434 33.333 0.00 0.00 0.00 1.40
394 395 8.718656 ACTCTATCCTATGGCTGTCTTTTTATT 58.281 33.333 0.00 0.00 0.00 1.40
395 396 8.153550 CACTCTATCCTATGGCTGTCTTTTTAT 58.846 37.037 0.00 0.00 0.00 1.40
396 397 7.419057 CCACTCTATCCTATGGCTGTCTTTTTA 60.419 40.741 0.00 0.00 0.00 1.52
397 398 6.352516 CACTCTATCCTATGGCTGTCTTTTT 58.647 40.000 0.00 0.00 0.00 1.94
398 399 5.163258 CCACTCTATCCTATGGCTGTCTTTT 60.163 44.000 0.00 0.00 0.00 2.27
399 400 4.346418 CCACTCTATCCTATGGCTGTCTTT 59.654 45.833 0.00 0.00 0.00 2.52
400 401 3.900601 CCACTCTATCCTATGGCTGTCTT 59.099 47.826 0.00 0.00 0.00 3.01
401 402 3.505386 CCACTCTATCCTATGGCTGTCT 58.495 50.000 0.00 0.00 0.00 3.41
402 403 2.564947 CCCACTCTATCCTATGGCTGTC 59.435 54.545 0.00 0.00 0.00 3.51
403 404 2.180086 TCCCACTCTATCCTATGGCTGT 59.820 50.000 0.00 0.00 0.00 4.40
404 405 2.830923 CTCCCACTCTATCCTATGGCTG 59.169 54.545 0.00 0.00 0.00 4.85
405 406 2.825072 GCTCCCACTCTATCCTATGGCT 60.825 54.545 0.00 0.00 0.00 4.75
406 407 1.552792 GCTCCCACTCTATCCTATGGC 59.447 57.143 0.00 0.00 0.00 4.40
407 408 2.564947 GTGCTCCCACTCTATCCTATGG 59.435 54.545 0.00 0.00 38.93 2.74
408 409 2.230025 CGTGCTCCCACTCTATCCTATG 59.770 54.545 0.00 0.00 39.86 2.23
409 410 2.520069 CGTGCTCCCACTCTATCCTAT 58.480 52.381 0.00 0.00 39.86 2.57
410 411 1.478837 CCGTGCTCCCACTCTATCCTA 60.479 57.143 0.00 0.00 39.86 2.94
411 412 0.757188 CCGTGCTCCCACTCTATCCT 60.757 60.000 0.00 0.00 39.86 3.24
412 413 0.755698 TCCGTGCTCCCACTCTATCC 60.756 60.000 0.00 0.00 39.86 2.59
413 414 1.000283 CATCCGTGCTCCCACTCTATC 60.000 57.143 0.00 0.00 39.86 2.08
414 415 1.043816 CATCCGTGCTCCCACTCTAT 58.956 55.000 0.00 0.00 39.86 1.98
415 416 1.043116 CCATCCGTGCTCCCACTCTA 61.043 60.000 0.00 0.00 39.86 2.43
416 417 2.362369 CCATCCGTGCTCCCACTCT 61.362 63.158 0.00 0.00 39.86 3.24
417 418 2.187946 CCATCCGTGCTCCCACTC 59.812 66.667 0.00 0.00 39.86 3.51
418 419 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
419 420 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
420 421 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
421 422 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
422 423 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
423 424 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
424 425 1.913951 TTCATGCTCCCATCCGTGCT 61.914 55.000 0.00 0.00 0.00 4.40
425 426 1.442526 CTTCATGCTCCCATCCGTGC 61.443 60.000 0.00 0.00 0.00 5.34
426 427 0.178767 TCTTCATGCTCCCATCCGTG 59.821 55.000 0.00 0.00 0.00 4.94
427 428 0.467384 CTCTTCATGCTCCCATCCGT 59.533 55.000 0.00 0.00 0.00 4.69
428 429 0.250209 CCTCTTCATGCTCCCATCCG 60.250 60.000 0.00 0.00 0.00 4.18
429 430 0.110104 CCCTCTTCATGCTCCCATCC 59.890 60.000 0.00 0.00 0.00 3.51
430 431 1.072015 CTCCCTCTTCATGCTCCCATC 59.928 57.143 0.00 0.00 0.00 3.51
431 432 1.138568 CTCCCTCTTCATGCTCCCAT 58.861 55.000 0.00 0.00 0.00 4.00
432 433 1.630126 GCTCCCTCTTCATGCTCCCA 61.630 60.000 0.00 0.00 0.00 4.37
433 434 1.148048 GCTCCCTCTTCATGCTCCC 59.852 63.158 0.00 0.00 0.00 4.30
434 435 0.179051 CTGCTCCCTCTTCATGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
435 436 0.179051 CCTGCTCCCTCTTCATGCTC 60.179 60.000 0.00 0.00 0.00 4.26
436 437 1.913722 CCTGCTCCCTCTTCATGCT 59.086 57.895 0.00 0.00 0.00 3.79
437 438 1.823041 GCCTGCTCCCTCTTCATGC 60.823 63.158 0.00 0.00 0.00 4.06
438 439 0.034767 TTGCCTGCTCCCTCTTCATG 60.035 55.000 0.00 0.00 0.00 3.07
439 440 0.255318 CTTGCCTGCTCCCTCTTCAT 59.745 55.000 0.00 0.00 0.00 2.57
440 441 1.681666 CTTGCCTGCTCCCTCTTCA 59.318 57.895 0.00 0.00 0.00 3.02
441 442 1.748500 GCTTGCCTGCTCCCTCTTC 60.749 63.158 0.00 0.00 0.00 2.87
442 443 2.354343 GCTTGCCTGCTCCCTCTT 59.646 61.111 0.00 0.00 0.00 2.85
443 444 3.726144 GGCTTGCCTGCTCCCTCT 61.726 66.667 4.11 0.00 0.00 3.69
447 448 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
448 449 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
449 450 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
469 470 4.729918 AAGGGAGCAGGCAAGCCG 62.730 66.667 5.28 2.12 41.95 5.52
470 471 2.753446 GAAGGGAGCAGGCAAGCC 60.753 66.667 2.02 2.02 34.23 4.35
471 472 2.753446 GGAAGGGAGCAGGCAAGC 60.753 66.667 0.00 0.00 0.00 4.01
472 473 2.044551 GGGAAGGGAGCAGGCAAG 60.045 66.667 0.00 0.00 0.00 4.01
473 474 2.215451 GATGGGAAGGGAGCAGGCAA 62.215 60.000 0.00 0.00 0.00 4.52
474 475 2.614969 ATGGGAAGGGAGCAGGCA 60.615 61.111 0.00 0.00 0.00 4.75
475 476 2.194326 GATGGGAAGGGAGCAGGC 59.806 66.667 0.00 0.00 0.00 4.85
476 477 0.984961 TGAGATGGGAAGGGAGCAGG 60.985 60.000 0.00 0.00 0.00 4.85
477 478 1.072015 GATGAGATGGGAAGGGAGCAG 59.928 57.143 0.00 0.00 0.00 4.24
478 479 1.135094 GATGAGATGGGAAGGGAGCA 58.865 55.000 0.00 0.00 0.00 4.26
479 480 0.399833 GGATGAGATGGGAAGGGAGC 59.600 60.000 0.00 0.00 0.00 4.70
480 481 0.683973 CGGATGAGATGGGAAGGGAG 59.316 60.000 0.00 0.00 0.00 4.30
481 482 0.031111 ACGGATGAGATGGGAAGGGA 60.031 55.000 0.00 0.00 0.00 4.20
482 483 0.107456 CACGGATGAGATGGGAAGGG 59.893 60.000 0.00 0.00 0.00 3.95
483 484 0.533755 GCACGGATGAGATGGGAAGG 60.534 60.000 0.00 0.00 0.00 3.46
484 485 0.467384 AGCACGGATGAGATGGGAAG 59.533 55.000 0.00 0.00 0.00 3.46
485 486 0.465705 GAGCACGGATGAGATGGGAA 59.534 55.000 0.00 0.00 0.00 3.97
486 487 1.402896 GGAGCACGGATGAGATGGGA 61.403 60.000 0.00 0.00 0.00 4.37
487 488 1.070445 GGAGCACGGATGAGATGGG 59.930 63.158 0.00 0.00 0.00 4.00
488 489 1.070445 GGGAGCACGGATGAGATGG 59.930 63.158 0.00 0.00 0.00 3.51
489 490 0.531532 GTGGGAGCACGGATGAGATG 60.532 60.000 0.00 0.00 0.00 2.90
490 491 0.689080 AGTGGGAGCACGGATGAGAT 60.689 55.000 0.00 0.00 0.00 2.75
491 492 0.904865 AAGTGGGAGCACGGATGAGA 60.905 55.000 0.00 0.00 0.00 3.27
492 493 0.460987 GAAGTGGGAGCACGGATGAG 60.461 60.000 0.00 0.00 0.00 2.90
493 494 1.191489 TGAAGTGGGAGCACGGATGA 61.191 55.000 0.00 0.00 0.00 2.92
494 495 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
495 496 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
496 497 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
497 498 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
498 499 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
499 500 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
500 501 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
501 502 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
538 539 8.919145 GGAGGAGATGATTAGACTAGAAAGAAA 58.081 37.037 0.00 0.00 0.00 2.52
539 540 8.061920 TGGAGGAGATGATTAGACTAGAAAGAA 58.938 37.037 0.00 0.00 0.00 2.52
540 541 7.504238 GTGGAGGAGATGATTAGACTAGAAAGA 59.496 40.741 0.00 0.00 0.00 2.52
541 542 7.255801 GGTGGAGGAGATGATTAGACTAGAAAG 60.256 44.444 0.00 0.00 0.00 2.62
542 543 6.551601 GGTGGAGGAGATGATTAGACTAGAAA 59.448 42.308 0.00 0.00 0.00 2.52
543 544 6.071984 GGTGGAGGAGATGATTAGACTAGAA 58.928 44.000 0.00 0.00 0.00 2.10
544 545 5.636123 GGTGGAGGAGATGATTAGACTAGA 58.364 45.833 0.00 0.00 0.00 2.43
545 546 4.457603 CGGTGGAGGAGATGATTAGACTAG 59.542 50.000 0.00 0.00 0.00 2.57
546 547 4.104261 TCGGTGGAGGAGATGATTAGACTA 59.896 45.833 0.00 0.00 0.00 2.59
547 548 3.117474 TCGGTGGAGGAGATGATTAGACT 60.117 47.826 0.00 0.00 0.00 3.24
548 549 3.223435 TCGGTGGAGGAGATGATTAGAC 58.777 50.000 0.00 0.00 0.00 2.59
549 550 3.595190 TCGGTGGAGGAGATGATTAGA 57.405 47.619 0.00 0.00 0.00 2.10
550 551 4.881019 AATCGGTGGAGGAGATGATTAG 57.119 45.455 0.00 0.00 0.00 1.73
551 552 4.653801 TCAAATCGGTGGAGGAGATGATTA 59.346 41.667 0.00 0.00 0.00 1.75
552 553 3.455910 TCAAATCGGTGGAGGAGATGATT 59.544 43.478 0.00 0.00 0.00 2.57
553 554 3.041211 TCAAATCGGTGGAGGAGATGAT 58.959 45.455 0.00 0.00 0.00 2.45
554 555 2.466846 TCAAATCGGTGGAGGAGATGA 58.533 47.619 0.00 0.00 0.00 2.92
555 556 2.988010 TCAAATCGGTGGAGGAGATG 57.012 50.000 0.00 0.00 0.00 2.90
556 557 2.171448 CCTTCAAATCGGTGGAGGAGAT 59.829 50.000 3.58 0.00 46.21 2.75
557 558 1.555075 CCTTCAAATCGGTGGAGGAGA 59.445 52.381 3.58 0.00 46.21 3.71
558 559 1.555075 TCCTTCAAATCGGTGGAGGAG 59.445 52.381 7.41 0.00 46.70 3.69
560 561 2.489938 TTCCTTCAAATCGGTGGAGG 57.510 50.000 3.32 3.32 44.82 4.30
561 562 2.684881 CCATTCCTTCAAATCGGTGGAG 59.315 50.000 0.00 0.00 0.00 3.86
562 563 2.620367 CCCATTCCTTCAAATCGGTGGA 60.620 50.000 0.00 0.00 0.00 4.02
563 564 1.750778 CCCATTCCTTCAAATCGGTGG 59.249 52.381 0.00 0.00 0.00 4.61
564 565 2.423538 GTCCCATTCCTTCAAATCGGTG 59.576 50.000 0.00 0.00 0.00 4.94
565 566 2.723273 GTCCCATTCCTTCAAATCGGT 58.277 47.619 0.00 0.00 0.00 4.69
566 567 1.670811 CGTCCCATTCCTTCAAATCGG 59.329 52.381 0.00 0.00 0.00 4.18
567 568 2.627945 TCGTCCCATTCCTTCAAATCG 58.372 47.619 0.00 0.00 0.00 3.34
568 569 5.582689 AAATCGTCCCATTCCTTCAAATC 57.417 39.130 0.00 0.00 0.00 2.17
569 570 6.358974 AAAAATCGTCCCATTCCTTCAAAT 57.641 33.333 0.00 0.00 0.00 2.32
570 571 5.799827 AAAAATCGTCCCATTCCTTCAAA 57.200 34.783 0.00 0.00 0.00 2.69
571 572 7.475137 AATAAAAATCGTCCCATTCCTTCAA 57.525 32.000 0.00 0.00 0.00 2.69
572 573 7.475137 AAATAAAAATCGTCCCATTCCTTCA 57.525 32.000 0.00 0.00 0.00 3.02
573 574 7.817478 ACAAAATAAAAATCGTCCCATTCCTTC 59.183 33.333 0.00 0.00 0.00 3.46
574 575 7.676004 ACAAAATAAAAATCGTCCCATTCCTT 58.324 30.769 0.00 0.00 0.00 3.36
575 576 7.239763 ACAAAATAAAAATCGTCCCATTCCT 57.760 32.000 0.00 0.00 0.00 3.36
576 577 7.064134 GGAACAAAATAAAAATCGTCCCATTCC 59.936 37.037 0.00 0.00 0.00 3.01
577 578 7.600752 TGGAACAAAATAAAAATCGTCCCATTC 59.399 33.333 0.00 0.00 31.92 2.67
578 579 7.445945 TGGAACAAAATAAAAATCGTCCCATT 58.554 30.769 0.00 0.00 31.92 3.16
579 580 6.998802 TGGAACAAAATAAAAATCGTCCCAT 58.001 32.000 0.00 0.00 31.92 4.00
580 581 6.406692 TGGAACAAAATAAAAATCGTCCCA 57.593 33.333 0.00 0.00 31.92 4.37
597 598 5.827267 TCTGTGTCTTGATTTGATTGGAACA 59.173 36.000 0.00 0.00 0.00 3.18
598 599 6.145535 GTCTGTGTCTTGATTTGATTGGAAC 58.854 40.000 0.00 0.00 0.00 3.62
599 600 5.827267 TGTCTGTGTCTTGATTTGATTGGAA 59.173 36.000 0.00 0.00 0.00 3.53
600 601 5.239306 GTGTCTGTGTCTTGATTTGATTGGA 59.761 40.000 0.00 0.00 0.00 3.53
601 602 5.455392 GTGTCTGTGTCTTGATTTGATTGG 58.545 41.667 0.00 0.00 0.00 3.16
602 603 5.142265 CGTGTCTGTGTCTTGATTTGATTG 58.858 41.667 0.00 0.00 0.00 2.67
603 604 4.816385 ACGTGTCTGTGTCTTGATTTGATT 59.184 37.500 0.00 0.00 0.00 2.57
604 605 4.380531 ACGTGTCTGTGTCTTGATTTGAT 58.619 39.130 0.00 0.00 0.00 2.57
605 606 3.792401 ACGTGTCTGTGTCTTGATTTGA 58.208 40.909 0.00 0.00 0.00 2.69
606 607 5.405269 TCATACGTGTCTGTGTCTTGATTTG 59.595 40.000 0.00 0.00 0.00 2.32
607 608 5.405571 GTCATACGTGTCTGTGTCTTGATTT 59.594 40.000 0.00 0.00 0.00 2.17
608 609 4.923871 GTCATACGTGTCTGTGTCTTGATT 59.076 41.667 0.00 0.00 0.00 2.57
609 610 4.486090 GTCATACGTGTCTGTGTCTTGAT 58.514 43.478 0.00 0.00 0.00 2.57
610 611 3.608474 CGTCATACGTGTCTGTGTCTTGA 60.608 47.826 0.00 0.00 36.74 3.02
611 612 2.656897 CGTCATACGTGTCTGTGTCTTG 59.343 50.000 0.00 0.00 36.74 3.02
612 613 2.929960 CGTCATACGTGTCTGTGTCTT 58.070 47.619 0.00 0.00 36.74 3.01
613 614 2.613730 CGTCATACGTGTCTGTGTCT 57.386 50.000 0.00 0.00 36.74 3.41
625 626 2.033049 AGTGCTCCGTCATACGTCATAC 59.967 50.000 0.00 0.00 40.58 2.39
626 627 2.289820 GAGTGCTCCGTCATACGTCATA 59.710 50.000 0.00 0.00 40.58 2.15
627 628 1.065701 GAGTGCTCCGTCATACGTCAT 59.934 52.381 0.00 0.00 40.58 3.06
628 629 0.450583 GAGTGCTCCGTCATACGTCA 59.549 55.000 0.00 0.00 40.58 4.35
629 630 0.733729 AGAGTGCTCCGTCATACGTC 59.266 55.000 0.00 0.00 40.58 4.34
630 631 1.174783 AAGAGTGCTCCGTCATACGT 58.825 50.000 0.00 0.00 40.58 3.57
631 632 2.279582 AAAGAGTGCTCCGTCATACG 57.720 50.000 0.00 0.00 42.11 3.06
632 633 2.094417 GCAAAAGAGTGCTCCGTCATAC 59.906 50.000 0.00 0.00 41.51 2.39
633 634 2.346803 GCAAAAGAGTGCTCCGTCATA 58.653 47.619 0.00 0.00 41.51 2.15
634 635 1.160137 GCAAAAGAGTGCTCCGTCAT 58.840 50.000 0.00 0.00 41.51 3.06
635 636 0.884704 GGCAAAAGAGTGCTCCGTCA 60.885 55.000 0.00 0.00 44.31 4.35
636 637 1.869690 GGCAAAAGAGTGCTCCGTC 59.130 57.895 0.00 0.00 44.31 4.79
637 638 1.961277 CGGCAAAAGAGTGCTCCGT 60.961 57.895 0.00 0.00 44.31 4.69
638 639 1.901650 GACGGCAAAAGAGTGCTCCG 61.902 60.000 0.00 0.00 44.31 4.63
639 640 1.869690 GACGGCAAAAGAGTGCTCC 59.130 57.895 0.00 0.00 44.31 4.70
640 641 1.493311 CGACGGCAAAAGAGTGCTC 59.507 57.895 0.00 0.00 44.31 4.26
641 642 2.607892 GCGACGGCAAAAGAGTGCT 61.608 57.895 0.00 0.00 44.31 4.40
642 643 2.127232 GCGACGGCAAAAGAGTGC 60.127 61.111 0.00 0.00 44.14 4.40
643 644 2.170985 CGCGACGGCAAAAGAGTG 59.829 61.111 0.00 0.00 39.92 3.51
644 645 3.712881 GCGCGACGGCAAAAGAGT 61.713 61.111 12.10 0.00 39.92 3.24
662 663 1.556958 CGCGCGATTGAGATGTCTG 59.443 57.895 28.94 0.00 0.00 3.51
807 813 0.802222 CGTGCAGTACCCATCGACTG 60.802 60.000 0.00 0.00 44.88 3.51
859 865 1.066858 TGGGAATCGAACACTGAGCTC 60.067 52.381 6.82 6.82 0.00 4.09
860 866 0.976641 TGGGAATCGAACACTGAGCT 59.023 50.000 0.00 0.00 0.00 4.09
903 910 2.225192 TGGTAGGTAGTGGTACTGCACT 60.225 50.000 9.35 9.35 32.12 4.40
904 911 2.165845 CTGGTAGGTAGTGGTACTGCAC 59.834 54.545 0.00 0.00 32.12 4.57
910 917 0.323633 TGCGCTGGTAGGTAGTGGTA 60.324 55.000 9.73 0.00 0.00 3.25
912 919 1.153628 GTGCGCTGGTAGGTAGTGG 60.154 63.158 9.73 0.00 0.00 4.00
988 1005 0.908910 ATGGCCATGGACGACAGTAA 59.091 50.000 20.04 0.00 0.00 2.24
996 1013 1.994916 CGTTTTTCATGGCCATGGAC 58.005 50.000 38.81 29.00 39.24 4.02
1010 1027 4.012895 CCTGCTGCGTCGCGTTTT 62.013 61.111 13.38 0.00 0.00 2.43
1045 1062 2.680352 GCTCCTGGTGAGGGACGA 60.680 66.667 0.00 0.00 41.73 4.20
1077 1094 8.325477 AGAGGCTAGTGATAAGTAAGGAAAAT 57.675 34.615 0.00 0.00 0.00 1.82
1119 1136 3.494045 TTCACGTGTGCATTGTCAAAA 57.506 38.095 16.51 0.00 0.00 2.44
1154 1173 0.887933 CCCACCGCTAGCACATTTTT 59.112 50.000 16.45 0.00 0.00 1.94
1163 1182 1.115467 AGAGATGAACCCACCGCTAG 58.885 55.000 0.00 0.00 0.00 3.42
1192 1211 4.309950 GGGACGCCTGGACAACGT 62.310 66.667 0.00 0.00 43.83 3.99
1387 1406 3.515330 ATGTTGTAGCCGTGGTAGTAC 57.485 47.619 0.00 0.00 0.00 2.73
1390 1409 2.855963 CGTAATGTTGTAGCCGTGGTAG 59.144 50.000 0.00 0.00 0.00 3.18
1391 1410 2.230992 ACGTAATGTTGTAGCCGTGGTA 59.769 45.455 0.00 0.00 0.00 3.25
1393 1412 1.717194 ACGTAATGTTGTAGCCGTGG 58.283 50.000 0.00 0.00 0.00 4.94
1394 1413 3.241426 CGTAACGTAATGTTGTAGCCGTG 60.241 47.826 0.00 0.00 42.01 4.94
1397 1416 3.482436 GCACGTAACGTAATGTTGTAGCC 60.482 47.826 0.00 0.00 42.01 3.93
1398 1417 3.482436 GGCACGTAACGTAATGTTGTAGC 60.482 47.826 0.00 0.00 42.01 3.58
1401 1420 2.221517 GTGGCACGTAACGTAATGTTGT 59.778 45.455 0.00 0.00 42.01 3.32
1405 1424 4.027132 GTGATAGTGGCACGTAACGTAATG 60.027 45.833 12.71 0.00 38.32 1.90
1406 1425 4.107622 GTGATAGTGGCACGTAACGTAAT 58.892 43.478 12.71 0.00 38.32 1.89
1408 1427 2.749076 AGTGATAGTGGCACGTAACGTA 59.251 45.455 12.71 0.00 38.32 3.57
1409 1428 1.542915 AGTGATAGTGGCACGTAACGT 59.457 47.619 12.71 0.00 42.36 3.99
1410 1429 2.273370 AGTGATAGTGGCACGTAACG 57.727 50.000 12.71 0.00 41.04 3.18
1411 1430 3.545078 CGTTAGTGATAGTGGCACGTAAC 59.455 47.826 12.71 8.60 41.04 2.50
1412 1431 3.427909 CCGTTAGTGATAGTGGCACGTAA 60.428 47.826 12.71 2.19 41.04 3.18
1413 1432 2.097954 CCGTTAGTGATAGTGGCACGTA 59.902 50.000 12.71 5.66 41.04 3.57
1414 1433 1.135199 CCGTTAGTGATAGTGGCACGT 60.135 52.381 12.71 5.02 41.04 4.49
1415 1434 1.133598 TCCGTTAGTGATAGTGGCACG 59.866 52.381 12.71 0.00 41.04 5.34
1416 1435 2.953466 TCCGTTAGTGATAGTGGCAC 57.047 50.000 10.29 10.29 36.53 5.01
1418 1437 2.934553 GGTTTCCGTTAGTGATAGTGGC 59.065 50.000 0.00 0.00 0.00 5.01
1435 1454 1.355210 CTCTGCGTGCAAACGGTTT 59.645 52.632 0.00 0.00 0.00 3.27
1436 1455 3.022287 CTCTGCGTGCAAACGGTT 58.978 55.556 0.00 0.00 0.00 4.44
1440 1459 2.180131 CTCCAGCTCTGCGTGCAAAC 62.180 60.000 0.00 0.00 0.00 2.93
1443 1462 2.776670 CTTCTCCAGCTCTGCGTGCA 62.777 60.000 0.00 0.00 0.00 4.57
1444 1463 2.047844 TTCTCCAGCTCTGCGTGC 60.048 61.111 0.00 0.00 0.00 5.34
1445 1464 2.099431 GCTTCTCCAGCTCTGCGTG 61.099 63.158 0.00 0.00 46.27 5.34
2020 2975 3.120649 GGACAAAATATACGCTGGCGATC 60.121 47.826 21.77 4.73 42.83 3.69
2021 2976 2.806244 GGACAAAATATACGCTGGCGAT 59.194 45.455 21.77 12.30 42.83 4.58
2022 2977 2.206750 GGACAAAATATACGCTGGCGA 58.793 47.619 21.77 5.84 42.83 5.54
2023 2978 1.937223 TGGACAAAATATACGCTGGCG 59.063 47.619 13.56 13.56 46.03 5.69
2064 3295 3.369997 GCCCCTGGAAAAAGAACAAACAA 60.370 43.478 0.00 0.00 0.00 2.83
2066 3297 2.169561 TGCCCCTGGAAAAAGAACAAAC 59.830 45.455 0.00 0.00 0.00 2.93
2068 3299 2.166907 TGCCCCTGGAAAAAGAACAA 57.833 45.000 0.00 0.00 0.00 2.83
2076 3308 1.337118 GTTGAACATGCCCCTGGAAA 58.663 50.000 0.00 0.00 0.00 3.13
2167 3399 4.687215 GCGTCTGCCACTGCCTGA 62.687 66.667 0.00 0.00 36.33 3.86
2223 3455 0.107214 AGAGAGAGAGCAGACCGGAG 60.107 60.000 9.46 0.00 0.00 4.63
2239 3471 2.620585 TGTGTGTGTGTGAGAGAGAGAG 59.379 50.000 0.00 0.00 0.00 3.20
2240 3472 2.359214 GTGTGTGTGTGTGAGAGAGAGA 59.641 50.000 0.00 0.00 0.00 3.10
2242 3474 2.099405 TGTGTGTGTGTGTGAGAGAGA 58.901 47.619 0.00 0.00 0.00 3.10
2245 3477 2.545526 GGAATGTGTGTGTGTGTGAGAG 59.454 50.000 0.00 0.00 0.00 3.20
2247 3479 2.564771 AGGAATGTGTGTGTGTGTGAG 58.435 47.619 0.00 0.00 0.00 3.51
2253 3490 4.126437 TGTACAGAAGGAATGTGTGTGTG 58.874 43.478 0.00 0.00 36.03 3.82
2255 3492 5.749596 TTTGTACAGAAGGAATGTGTGTG 57.250 39.130 0.00 0.00 36.03 3.82
2259 3496 8.612619 GGTGTATATTTGTACAGAAGGAATGTG 58.387 37.037 0.00 0.00 35.40 3.21
2454 3706 1.895707 GAGCTTGCTGTGTGGTGCT 60.896 57.895 0.00 0.00 0.00 4.40
2518 4985 0.036010 ACCTCAGCTGCACCACATAC 60.036 55.000 9.47 0.00 0.00 2.39
2549 5021 1.280133 CCTCTCCAGCATGTCCTTCAA 59.720 52.381 0.00 0.00 0.00 2.69
2675 5406 2.112297 GTCGGGGACTTGGTGCAA 59.888 61.111 0.00 0.00 0.00 4.08
2680 5411 3.400054 GGGGAGTCGGGGACTTGG 61.400 72.222 0.00 0.00 43.53 3.61
2830 5564 4.202482 TGAAGGACAGTTTATCGGGGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
2835 5569 3.262420 CAGTGAAGGACAGTTTATCGGG 58.738 50.000 0.00 0.00 0.00 5.14
2837 5571 7.462856 CGAAATACAGTGAAGGACAGTTTATCG 60.463 40.741 0.00 0.00 28.36 2.92
2838 5572 7.331193 ACGAAATACAGTGAAGGACAGTTTATC 59.669 37.037 0.00 0.00 28.36 1.75
2839 5573 7.159372 ACGAAATACAGTGAAGGACAGTTTAT 58.841 34.615 0.00 0.00 0.00 1.40
2870 5604 9.672086 TTGCACAACACTTTGACTTTATTATAC 57.328 29.630 0.00 0.00 36.48 1.47
2950 5696 5.916661 TCTTACCTTACTTCTAGCAGTGG 57.083 43.478 5.19 1.48 0.00 4.00
3018 5764 3.118665 ACTTGCTTGTTTGGTTGCTCATT 60.119 39.130 0.00 0.00 0.00 2.57
3023 5769 7.257722 ACATATATACTTGCTTGTTTGGTTGC 58.742 34.615 0.00 0.00 0.00 4.17
3057 5803 5.048224 CCTGAATGATGTTGCTTCTTTCTGT 60.048 40.000 9.97 0.00 31.81 3.41
3073 5820 4.838423 TGTAGAGGTTGAGTTCCTGAATGA 59.162 41.667 0.00 0.00 35.20 2.57
3076 5823 5.623956 TTTGTAGAGGTTGAGTTCCTGAA 57.376 39.130 0.00 0.00 35.20 3.02
3187 5935 5.061721 ACCAGGGTCAGTTAGTTTTCAAT 57.938 39.130 0.00 0.00 0.00 2.57
3188 5936 4.513406 ACCAGGGTCAGTTAGTTTTCAA 57.487 40.909 0.00 0.00 0.00 2.69
3190 5938 3.568430 CCAACCAGGGTCAGTTAGTTTTC 59.432 47.826 0.00 0.00 0.00 2.29
3469 6218 3.972133 TGCAAAGATGGGAGTGATGATT 58.028 40.909 0.00 0.00 0.00 2.57
3516 6265 7.231607 GCATGCAACTTTATTCACTTGAATTG 58.768 34.615 14.21 4.24 41.64 2.32
3541 6290 2.682856 CGTCCCATTGAACAATACAGGG 59.317 50.000 12.40 12.40 34.52 4.45
3608 6358 5.221843 GGAACTGCCATATGGGTTATCTGTA 60.222 44.000 23.30 0.00 39.65 2.74
3624 6374 1.981256 TTTGAGAACCTGGAACTGCC 58.019 50.000 0.00 0.00 37.10 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.