Multiple sequence alignment - TraesCS6A01G274700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G274700 chr6A 100.000 3711 0 0 1 3711 501496636 501500346 0.000000e+00 6854.0
1 TraesCS6A01G274700 chr6A 90.041 241 12 2 480 709 182323201 182322962 6.020000e-78 302.0
2 TraesCS6A01G274700 chr6A 93.182 44 1 2 667 709 243978041 243977999 3.090000e-06 63.9
3 TraesCS6A01G274700 chr6B 95.598 2022 73 7 1693 3702 542009917 542011934 0.000000e+00 3227.0
4 TraesCS6A01G274700 chr6B 91.948 534 20 10 1150 1679 542009348 542009862 0.000000e+00 726.0
5 TraesCS6A01G274700 chr6B 94.093 237 13 1 829 1064 542009064 542009300 3.520000e-95 359.0
6 TraesCS6A01G274700 chr6B 90.667 75 5 1 725 797 362373582 362373656 8.480000e-17 99.0
7 TraesCS6A01G274700 chr6B 86.905 84 9 1 725 806 368303390 368303307 3.950000e-15 93.5
8 TraesCS6A01G274700 chr6B 94.340 53 3 0 424 476 498537785 498537733 8.540000e-12 82.4
9 TraesCS6A01G274700 chr6D 94.897 2038 77 17 1679 3710 360340326 360342342 0.000000e+00 3162.0
10 TraesCS6A01G274700 chr6D 94.402 393 11 4 1 392 360338992 360339374 8.870000e-166 593.0
11 TraesCS6A01G274700 chr6D 98.333 240 4 0 829 1068 360339411 360339650 4.430000e-114 422.0
12 TraesCS6A01G274700 chr6D 93.676 253 10 3 1170 1417 360339706 360339957 1.260000e-99 374.0
13 TraesCS6A01G274700 chr6D 90.517 232 22 0 1445 1676 360340045 360340276 1.290000e-79 307.0
14 TraesCS6A01G274700 chr5A 90.871 241 10 2 480 709 227533956 227534195 2.780000e-81 313.0
15 TraesCS6A01G274700 chr5A 90.456 241 11 2 480 709 227435972 227436211 1.290000e-79 307.0
16 TraesCS6A01G274700 chr5A 90.456 241 11 2 480 709 227475944 227476183 1.290000e-79 307.0
17 TraesCS6A01G274700 chr5A 94.231 52 3 0 424 475 31002773 31002722 3.070000e-11 80.5
18 TraesCS6A01G274700 chr7A 90.871 241 9 3 480 709 94843322 94843084 1.000000e-80 311.0
19 TraesCS6A01G274700 chr7A 90.456 241 11 2 480 709 730026552 730026791 1.290000e-79 307.0
20 TraesCS6A01G274700 chr7A 95.556 45 1 1 753 797 593375685 593375728 1.850000e-08 71.3
21 TraesCS6A01G274700 chrUn 90.456 241 11 2 480 709 191262233 191261994 1.290000e-79 307.0
22 TraesCS6A01G274700 chrUn 90.041 241 12 2 480 709 83696448 83696687 6.020000e-78 302.0
23 TraesCS6A01G274700 chr2B 95.789 190 8 0 480 669 782691790 782691601 1.290000e-79 307.0
24 TraesCS6A01G274700 chr2B 82.710 214 35 2 483 696 21954541 21954330 4.890000e-44 189.0
25 TraesCS6A01G274700 chr2B 91.358 81 5 1 725 803 669652009 669652089 3.920000e-20 110.0
26 TraesCS6A01G274700 chr2B 94.340 53 3 0 424 476 40529800 40529852 8.540000e-12 82.4
27 TraesCS6A01G274700 chr3A 90.041 241 12 4 480 709 1769188 1768949 6.020000e-78 302.0
28 TraesCS6A01G274700 chr3D 85.537 242 23 9 480 710 279939015 279938775 3.700000e-60 243.0
29 TraesCS6A01G274700 chr4A 88.652 141 4 2 580 709 621673227 621673366 1.070000e-35 161.0
30 TraesCS6A01G274700 chr4A 89.286 84 7 1 725 806 577103027 577102944 1.820000e-18 104.0
31 TraesCS6A01G274700 chr2A 93.590 78 3 2 725 800 16502463 16502540 8.420000e-22 115.0
32 TraesCS6A01G274700 chr2A 94.643 56 3 0 421 476 16502406 16502461 1.840000e-13 87.9
33 TraesCS6A01G274700 chr5D 92.308 78 4 1 725 800 531421959 531422036 3.920000e-20 110.0
34 TraesCS6A01G274700 chr5D 96.078 51 2 0 425 475 531421906 531421956 2.380000e-12 84.2
35 TraesCS6A01G274700 chr7B 91.892 74 4 2 725 797 540243882 540243954 6.560000e-18 102.0
36 TraesCS6A01G274700 chr7B 92.593 54 2 2 424 476 540243828 540243880 3.970000e-10 76.8
37 TraesCS6A01G274700 chr3B 92.000 75 3 2 725 797 657344248 657344321 6.560000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G274700 chr6A 501496636 501500346 3710 False 6854.000000 6854 100.000000 1 3711 1 chr6A.!!$F1 3710
1 TraesCS6A01G274700 chr6B 542009064 542011934 2870 False 1437.333333 3227 93.879667 829 3702 3 chr6B.!!$F2 2873
2 TraesCS6A01G274700 chr6D 360338992 360342342 3350 False 971.600000 3162 94.365000 1 3710 5 chr6D.!!$F1 3709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 796 0.030092 CCATCCTCCCCTTAGGTCCA 60.030 60.0 0.00 0.0 37.91 4.02 F
1364 1383 0.040425 GCTACCAAACGCAACCACTG 60.040 55.0 0.00 0.0 0.00 3.66 F
1682 1775 0.310854 CCGGCCAACTTTTCACTCAC 59.689 55.0 2.24 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 1921 0.321122 CTCTTGCACAGAGGTCCACC 60.321 60.000 14.53 0.0 45.10 4.61 R
2302 2442 1.202891 GGGTACTTTGCAGTGTCCCTT 60.203 52.381 14.95 0.0 41.53 3.95 R
2952 3099 1.960417 GGCCTGTTTATCTGCCTCTC 58.040 55.000 0.00 0.0 40.77 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 6.513556 CGATGACGTGGAAGAGTATAGACAAT 60.514 42.308 0.00 0.00 34.56 2.71
75 76 7.818997 TGACGTGGAAGAGTATAGACAATAT 57.181 36.000 0.00 0.00 0.00 1.28
113 115 7.523293 TCTCTTAGCTAAGATGATCTCTTGG 57.477 40.000 31.24 17.81 44.12 3.61
168 170 6.763355 ACGAGATGCTATCTTTCCATTACAT 58.237 36.000 0.00 0.00 40.38 2.29
261 263 7.837898 GCCTTGTAGCGTTAATCATTTAATC 57.162 36.000 0.00 0.00 30.34 1.75
372 374 0.747255 CTGGGAGTCACGTAGGGATG 59.253 60.000 0.00 0.00 0.00 3.51
382 384 2.755655 CACGTAGGGATGTGAGTCTCTT 59.244 50.000 0.65 0.00 44.18 2.85
383 385 2.755655 ACGTAGGGATGTGAGTCTCTTG 59.244 50.000 0.65 0.00 29.97 3.02
395 410 8.939201 ATGTGAGTCTCTTGTATCATTAACAG 57.061 34.615 0.65 0.00 0.00 3.16
399 414 4.566759 GTCTCTTGTATCATTAACAGCGCA 59.433 41.667 11.47 0.00 0.00 6.09
420 435 5.354054 CATGCATGCAGGTCTAGTTATTC 57.646 43.478 26.69 0.00 0.00 1.75
421 436 3.808728 TGCATGCAGGTCTAGTTATTCC 58.191 45.455 18.46 0.00 0.00 3.01
422 437 3.455910 TGCATGCAGGTCTAGTTATTCCT 59.544 43.478 18.46 0.00 0.00 3.36
423 438 4.061596 GCATGCAGGTCTAGTTATTCCTC 58.938 47.826 14.21 0.00 0.00 3.71
424 439 4.636249 CATGCAGGTCTAGTTATTCCTCC 58.364 47.826 0.00 0.00 0.00 4.30
425 440 3.719871 TGCAGGTCTAGTTATTCCTCCA 58.280 45.455 0.00 0.00 0.00 3.86
426 441 4.101114 TGCAGGTCTAGTTATTCCTCCAA 58.899 43.478 0.00 0.00 0.00 3.53
427 442 4.721776 TGCAGGTCTAGTTATTCCTCCAAT 59.278 41.667 0.00 0.00 0.00 3.16
428 443 5.903010 TGCAGGTCTAGTTATTCCTCCAATA 59.097 40.000 0.00 0.00 0.00 1.90
429 444 6.385759 TGCAGGTCTAGTTATTCCTCCAATAA 59.614 38.462 0.00 0.00 35.00 1.40
430 445 7.072454 TGCAGGTCTAGTTATTCCTCCAATAAT 59.928 37.037 0.00 0.00 38.86 1.28
431 446 7.939588 GCAGGTCTAGTTATTCCTCCAATAATT 59.060 37.037 0.00 0.00 38.86 1.40
432 447 9.495572 CAGGTCTAGTTATTCCTCCAATAATTC 57.504 37.037 0.00 0.00 38.86 2.17
433 448 9.453830 AGGTCTAGTTATTCCTCCAATAATTCT 57.546 33.333 0.00 0.00 38.86 2.40
439 454 9.004231 AGTTATTCCTCCAATAATTCTACACCT 57.996 33.333 0.00 0.00 38.86 4.00
442 457 6.401047 TCCTCCAATAATTCTACACCTACG 57.599 41.667 0.00 0.00 0.00 3.51
443 458 5.895534 TCCTCCAATAATTCTACACCTACGT 59.104 40.000 0.00 0.00 0.00 3.57
444 459 5.983720 CCTCCAATAATTCTACACCTACGTG 59.016 44.000 0.00 0.00 46.11 4.49
445 460 6.183360 CCTCCAATAATTCTACACCTACGTGA 60.183 42.308 0.00 0.00 43.14 4.35
446 461 7.172868 TCCAATAATTCTACACCTACGTGAA 57.827 36.000 0.00 0.00 43.14 3.18
447 462 7.262772 TCCAATAATTCTACACCTACGTGAAG 58.737 38.462 0.00 0.00 43.14 3.02
448 463 7.039882 CCAATAATTCTACACCTACGTGAAGT 58.960 38.462 0.00 0.00 43.14 3.01
449 464 7.548075 CCAATAATTCTACACCTACGTGAAGTT 59.452 37.037 0.00 0.00 43.14 2.66
450 465 9.577110 CAATAATTCTACACCTACGTGAAGTTA 57.423 33.333 0.00 0.00 43.14 2.24
451 466 9.798994 AATAATTCTACACCTACGTGAAGTTAG 57.201 33.333 0.00 0.00 43.14 2.34
452 467 4.691860 TCTACACCTACGTGAAGTTAGC 57.308 45.455 0.00 0.00 43.14 3.09
453 468 4.074259 TCTACACCTACGTGAAGTTAGCA 58.926 43.478 0.00 0.00 43.14 3.49
454 469 3.738830 ACACCTACGTGAAGTTAGCAA 57.261 42.857 0.00 0.00 43.14 3.91
455 470 4.062677 ACACCTACGTGAAGTTAGCAAA 57.937 40.909 0.00 0.00 43.14 3.68
456 471 4.056050 ACACCTACGTGAAGTTAGCAAAG 58.944 43.478 0.00 0.00 43.14 2.77
457 472 4.056050 CACCTACGTGAAGTTAGCAAAGT 58.944 43.478 0.00 0.00 43.14 2.66
458 473 4.510340 CACCTACGTGAAGTTAGCAAAGTT 59.490 41.667 0.00 0.00 43.14 2.66
459 474 5.007332 CACCTACGTGAAGTTAGCAAAGTTT 59.993 40.000 0.00 0.00 43.14 2.66
460 475 5.587443 ACCTACGTGAAGTTAGCAAAGTTTT 59.413 36.000 0.00 0.00 0.00 2.43
461 476 6.762661 ACCTACGTGAAGTTAGCAAAGTTTTA 59.237 34.615 0.00 0.00 0.00 1.52
462 477 7.067728 CCTACGTGAAGTTAGCAAAGTTTTAC 58.932 38.462 0.00 0.00 0.00 2.01
463 478 5.495502 ACGTGAAGTTAGCAAAGTTTTACG 58.504 37.500 0.00 0.00 40.68 3.18
464 479 5.063817 ACGTGAAGTTAGCAAAGTTTTACGT 59.936 36.000 12.30 12.30 41.74 3.57
465 480 6.255453 ACGTGAAGTTAGCAAAGTTTTACGTA 59.745 34.615 14.65 0.00 43.04 3.57
466 481 7.118724 CGTGAAGTTAGCAAAGTTTTACGTAA 58.881 34.615 3.29 3.29 35.91 3.18
467 482 7.635587 CGTGAAGTTAGCAAAGTTTTACGTAAA 59.364 33.333 16.59 16.59 35.91 2.01
468 483 9.442033 GTGAAGTTAGCAAAGTTTTACGTAAAT 57.558 29.630 20.72 4.99 0.00 1.40
469 484 9.654417 TGAAGTTAGCAAAGTTTTACGTAAATC 57.346 29.630 20.72 18.96 0.00 2.17
470 485 9.110617 GAAGTTAGCAAAGTTTTACGTAAATCC 57.889 33.333 20.72 14.21 0.00 3.01
471 486 8.387190 AGTTAGCAAAGTTTTACGTAAATCCT 57.613 30.769 20.72 16.03 0.00 3.24
472 487 8.843262 AGTTAGCAAAGTTTTACGTAAATCCTT 58.157 29.630 20.72 20.12 0.00 3.36
473 488 9.110617 GTTAGCAAAGTTTTACGTAAATCCTTC 57.889 33.333 20.72 13.64 0.00 3.46
474 489 7.506328 AGCAAAGTTTTACGTAAATCCTTCT 57.494 32.000 20.72 15.21 0.00 2.85
475 490 7.582352 AGCAAAGTTTTACGTAAATCCTTCTC 58.418 34.615 20.72 17.20 0.00 2.87
476 491 6.800408 GCAAAGTTTTACGTAAATCCTTCTCC 59.200 38.462 20.72 12.64 0.00 3.71
477 492 7.303261 CAAAGTTTTACGTAAATCCTTCTCCC 58.697 38.462 20.72 2.45 0.00 4.30
478 493 5.494724 AGTTTTACGTAAATCCTTCTCCCC 58.505 41.667 20.72 1.13 0.00 4.81
479 494 3.806625 TTACGTAAATCCTTCTCCCCG 57.193 47.619 5.31 0.00 0.00 5.73
480 495 0.828677 ACGTAAATCCTTCTCCCCGG 59.171 55.000 0.00 0.00 0.00 5.73
481 496 0.828677 CGTAAATCCTTCTCCCCGGT 59.171 55.000 0.00 0.00 0.00 5.28
482 497 1.202498 CGTAAATCCTTCTCCCCGGTC 60.202 57.143 0.00 0.00 0.00 4.79
483 498 1.117150 TAAATCCTTCTCCCCGGTCG 58.883 55.000 0.00 0.00 0.00 4.79
484 499 0.908180 AAATCCTTCTCCCCGGTCGT 60.908 55.000 0.00 0.00 0.00 4.34
485 500 0.032813 AATCCTTCTCCCCGGTCGTA 60.033 55.000 0.00 0.00 0.00 3.43
486 501 0.032813 ATCCTTCTCCCCGGTCGTAA 60.033 55.000 0.00 0.00 0.00 3.18
487 502 0.032813 TCCTTCTCCCCGGTCGTAAT 60.033 55.000 0.00 0.00 0.00 1.89
488 503 0.104304 CCTTCTCCCCGGTCGTAATG 59.896 60.000 0.00 0.00 0.00 1.90
489 504 1.108776 CTTCTCCCCGGTCGTAATGA 58.891 55.000 0.00 0.00 0.00 2.57
490 505 1.479323 CTTCTCCCCGGTCGTAATGAA 59.521 52.381 0.00 0.00 0.00 2.57
491 506 1.559368 TCTCCCCGGTCGTAATGAAA 58.441 50.000 0.00 0.00 0.00 2.69
492 507 1.479323 TCTCCCCGGTCGTAATGAAAG 59.521 52.381 0.00 0.00 0.00 2.62
493 508 1.206371 CTCCCCGGTCGTAATGAAAGT 59.794 52.381 0.00 0.00 0.00 2.66
494 509 2.428171 CTCCCCGGTCGTAATGAAAGTA 59.572 50.000 0.00 0.00 0.00 2.24
495 510 3.033184 TCCCCGGTCGTAATGAAAGTAT 58.967 45.455 0.00 0.00 0.00 2.12
496 511 3.068590 TCCCCGGTCGTAATGAAAGTATC 59.931 47.826 0.00 0.00 0.00 2.24
497 512 3.181473 CCCCGGTCGTAATGAAAGTATCA 60.181 47.826 0.00 0.00 43.67 2.15
513 528 8.806146 TGAAAGTATCATAGCTAGTATCATGCA 58.194 33.333 0.00 0.00 31.50 3.96
514 529 9.814899 GAAAGTATCATAGCTAGTATCATGCAT 57.185 33.333 0.00 0.00 0.00 3.96
517 532 8.855110 AGTATCATAGCTAGTATCATGCATACC 58.145 37.037 0.00 0.00 38.62 2.73
518 533 7.666063 ATCATAGCTAGTATCATGCATACCA 57.334 36.000 0.00 0.00 38.62 3.25
519 534 7.480760 TCATAGCTAGTATCATGCATACCAA 57.519 36.000 0.00 0.00 38.62 3.67
520 535 7.550712 TCATAGCTAGTATCATGCATACCAAG 58.449 38.462 0.00 0.00 38.62 3.61
521 536 5.815233 AGCTAGTATCATGCATACCAAGT 57.185 39.130 0.00 0.00 38.62 3.16
522 537 6.918067 AGCTAGTATCATGCATACCAAGTA 57.082 37.500 0.00 0.00 38.62 2.24
523 538 6.929625 AGCTAGTATCATGCATACCAAGTAG 58.070 40.000 0.00 3.74 38.62 2.57
524 539 6.721668 AGCTAGTATCATGCATACCAAGTAGA 59.278 38.462 0.00 0.00 38.62 2.59
525 540 6.809196 GCTAGTATCATGCATACCAAGTAGAC 59.191 42.308 0.00 0.00 38.62 2.59
526 541 6.731292 AGTATCATGCATACCAAGTAGACA 57.269 37.500 0.00 0.00 38.62 3.41
527 542 7.124573 AGTATCATGCATACCAAGTAGACAA 57.875 36.000 0.00 0.00 38.62 3.18
528 543 7.739825 AGTATCATGCATACCAAGTAGACAAT 58.260 34.615 0.00 0.00 38.62 2.71
529 544 8.213679 AGTATCATGCATACCAAGTAGACAATT 58.786 33.333 0.00 0.00 38.62 2.32
530 545 7.886629 ATCATGCATACCAAGTAGACAATTT 57.113 32.000 0.00 0.00 0.00 1.82
531 546 7.701539 TCATGCATACCAAGTAGACAATTTT 57.298 32.000 0.00 0.00 0.00 1.82
532 547 7.537715 TCATGCATACCAAGTAGACAATTTTG 58.462 34.615 0.00 0.00 0.00 2.44
533 548 7.392953 TCATGCATACCAAGTAGACAATTTTGA 59.607 33.333 0.00 0.00 0.00 2.69
534 549 7.701539 TGCATACCAAGTAGACAATTTTGAT 57.298 32.000 0.00 0.00 0.00 2.57
535 550 7.537715 TGCATACCAAGTAGACAATTTTGATG 58.462 34.615 0.00 0.00 0.00 3.07
536 551 6.974622 GCATACCAAGTAGACAATTTTGATGG 59.025 38.462 0.00 0.00 0.00 3.51
537 552 7.362920 GCATACCAAGTAGACAATTTTGATGGT 60.363 37.037 0.00 0.00 41.27 3.55
538 553 6.331369 ACCAAGTAGACAATTTTGATGGTG 57.669 37.500 0.00 0.00 37.27 4.17
539 554 5.833131 ACCAAGTAGACAATTTTGATGGTGT 59.167 36.000 0.00 0.00 37.27 4.16
540 555 6.151691 CCAAGTAGACAATTTTGATGGTGTG 58.848 40.000 0.00 0.00 0.00 3.82
541 556 5.964958 AGTAGACAATTTTGATGGTGTGG 57.035 39.130 0.00 0.00 0.00 4.17
542 557 3.665745 AGACAATTTTGATGGTGTGGC 57.334 42.857 0.00 0.00 0.00 5.01
543 558 2.964464 AGACAATTTTGATGGTGTGGCA 59.036 40.909 0.00 0.00 0.00 4.92
544 559 3.579586 AGACAATTTTGATGGTGTGGCAT 59.420 39.130 0.00 0.00 0.00 4.40
545 560 4.771577 AGACAATTTTGATGGTGTGGCATA 59.228 37.500 0.00 0.00 0.00 3.14
546 561 5.075858 ACAATTTTGATGGTGTGGCATAG 57.924 39.130 0.00 0.00 0.00 2.23
547 562 4.771577 ACAATTTTGATGGTGTGGCATAGA 59.228 37.500 0.00 0.00 0.00 1.98
548 563 5.245751 ACAATTTTGATGGTGTGGCATAGAA 59.754 36.000 0.00 0.00 0.00 2.10
549 564 6.070653 ACAATTTTGATGGTGTGGCATAGAAT 60.071 34.615 0.00 0.00 0.00 2.40
550 565 5.999205 TTTTGATGGTGTGGCATAGAATT 57.001 34.783 0.00 0.00 0.00 2.17
551 566 7.658525 ATTTTGATGGTGTGGCATAGAATTA 57.341 32.000 0.00 0.00 0.00 1.40
552 567 7.473735 TTTTGATGGTGTGGCATAGAATTAA 57.526 32.000 0.00 0.00 0.00 1.40
553 568 7.473735 TTTGATGGTGTGGCATAGAATTAAA 57.526 32.000 0.00 0.00 0.00 1.52
554 569 7.658525 TTGATGGTGTGGCATAGAATTAAAT 57.341 32.000 0.00 0.00 0.00 1.40
555 570 7.041635 TGATGGTGTGGCATAGAATTAAATG 57.958 36.000 0.00 0.00 0.00 2.32
556 571 6.832900 TGATGGTGTGGCATAGAATTAAATGA 59.167 34.615 0.00 0.00 0.00 2.57
557 572 7.341512 TGATGGTGTGGCATAGAATTAAATGAA 59.658 33.333 0.00 0.00 0.00 2.57
558 573 7.099266 TGGTGTGGCATAGAATTAAATGAAG 57.901 36.000 0.00 0.00 0.00 3.02
559 574 6.889177 TGGTGTGGCATAGAATTAAATGAAGA 59.111 34.615 0.00 0.00 0.00 2.87
560 575 7.395772 TGGTGTGGCATAGAATTAAATGAAGAA 59.604 33.333 0.00 0.00 0.00 2.52
561 576 8.250332 GGTGTGGCATAGAATTAAATGAAGAAA 58.750 33.333 0.00 0.00 0.00 2.52
562 577 9.294030 GTGTGGCATAGAATTAAATGAAGAAAG 57.706 33.333 0.00 0.00 0.00 2.62
563 578 9.241919 TGTGGCATAGAATTAAATGAAGAAAGA 57.758 29.630 0.00 0.00 0.00 2.52
564 579 9.727627 GTGGCATAGAATTAAATGAAGAAAGAG 57.272 33.333 0.00 0.00 0.00 2.85
565 580 9.685276 TGGCATAGAATTAAATGAAGAAAGAGA 57.315 29.630 4.14 0.00 0.00 3.10
574 589 8.924511 TTAAATGAAGAAAGAGATGGTTGAGT 57.075 30.769 0.00 0.00 0.00 3.41
577 592 8.729805 AATGAAGAAAGAGATGGTTGAGTATC 57.270 34.615 0.00 0.00 0.00 2.24
608 623 7.446001 TGATACCGCATCATAATAAATGCAA 57.554 32.000 7.94 0.00 46.83 4.08
609 624 8.054152 TGATACCGCATCATAATAAATGCAAT 57.946 30.769 7.94 0.00 46.83 3.56
610 625 7.969508 TGATACCGCATCATAATAAATGCAATG 59.030 33.333 7.94 0.00 46.83 2.82
611 626 4.925054 ACCGCATCATAATAAATGCAATGC 59.075 37.500 0.00 0.00 46.83 3.56
612 627 5.165676 CCGCATCATAATAAATGCAATGCT 58.834 37.500 6.82 0.00 46.83 3.79
613 628 6.072008 ACCGCATCATAATAAATGCAATGCTA 60.072 34.615 6.82 0.00 46.83 3.49
614 629 6.252015 CCGCATCATAATAAATGCAATGCTAC 59.748 38.462 6.82 0.00 46.83 3.58
615 630 7.025365 CGCATCATAATAAATGCAATGCTACT 58.975 34.615 6.82 0.00 46.83 2.57
616 631 8.177013 CGCATCATAATAAATGCAATGCTACTA 58.823 33.333 6.82 0.00 46.83 1.82
626 641 5.868043 TGCAATGCTACTATGTATCATGC 57.132 39.130 6.82 0.00 0.00 4.06
627 642 5.307204 TGCAATGCTACTATGTATCATGCA 58.693 37.500 6.82 0.00 0.00 3.96
628 643 5.941647 TGCAATGCTACTATGTATCATGCAT 59.058 36.000 6.82 0.00 40.72 3.96
629 644 6.128117 TGCAATGCTACTATGTATCATGCATG 60.128 38.462 21.07 21.07 39.24 4.06
630 645 6.093082 GCAATGCTACTATGTATCATGCATGA 59.907 38.462 30.47 30.47 39.24 3.07
631 646 7.461918 CAATGCTACTATGTATCATGCATGAC 58.538 38.462 30.92 20.06 40.03 3.06
632 647 6.100404 TGCTACTATGTATCATGCATGACA 57.900 37.500 30.92 24.79 40.03 3.58
633 648 6.523840 TGCTACTATGTATCATGCATGACAA 58.476 36.000 30.92 19.21 40.03 3.18
634 649 7.163441 TGCTACTATGTATCATGCATGACAAT 58.837 34.615 30.92 23.78 40.03 2.71
635 650 8.313292 TGCTACTATGTATCATGCATGACAATA 58.687 33.333 30.92 23.64 40.03 1.90
636 651 9.154847 GCTACTATGTATCATGCATGACAATAA 57.845 33.333 30.92 15.31 40.03 1.40
647 662 9.955208 TCATGCATGACAATAAATAAAGTCATC 57.045 29.630 25.42 1.86 45.68 2.92
648 663 9.961265 CATGCATGACAATAAATAAAGTCATCT 57.039 29.630 22.59 0.00 45.68 2.90
691 706 9.995003 ATACTAGGTAGTATCACACACTAGTAC 57.005 37.037 9.92 0.00 43.99 2.73
692 707 7.278875 ACTAGGTAGTATCACACACTAGTACC 58.721 42.308 0.00 0.00 41.36 3.34
693 708 6.070951 AGGTAGTATCACACACTAGTACCA 57.929 41.667 13.37 0.00 42.59 3.25
694 709 6.670617 AGGTAGTATCACACACTAGTACCAT 58.329 40.000 13.37 0.00 42.59 3.55
695 710 7.809238 AGGTAGTATCACACACTAGTACCATA 58.191 38.462 13.37 0.00 42.59 2.74
696 711 8.446394 AGGTAGTATCACACACTAGTACCATAT 58.554 37.037 13.37 0.00 42.59 1.78
697 712 8.512956 GGTAGTATCACACACTAGTACCATATG 58.487 40.741 0.00 0.00 40.98 1.78
698 713 6.982852 AGTATCACACACTAGTACCATATGC 58.017 40.000 0.00 0.00 0.00 3.14
699 714 5.869649 ATCACACACTAGTACCATATGCA 57.130 39.130 0.00 0.00 0.00 3.96
700 715 5.869649 TCACACACTAGTACCATATGCAT 57.130 39.130 3.79 3.79 0.00 3.96
701 716 5.600696 TCACACACTAGTACCATATGCATG 58.399 41.667 10.16 0.00 0.00 4.06
702 717 5.362430 TCACACACTAGTACCATATGCATGA 59.638 40.000 10.16 0.00 33.67 3.07
703 718 6.041979 TCACACACTAGTACCATATGCATGAT 59.958 38.462 10.16 0.00 33.67 2.45
704 719 6.707608 CACACACTAGTACCATATGCATGATT 59.292 38.462 10.16 0.00 33.67 2.57
705 720 7.872483 CACACACTAGTACCATATGCATGATTA 59.128 37.037 10.16 0.00 33.67 1.75
706 721 7.872993 ACACACTAGTACCATATGCATGATTAC 59.127 37.037 10.16 5.56 33.67 1.89
707 722 8.090831 CACACTAGTACCATATGCATGATTACT 58.909 37.037 10.16 12.31 36.03 2.24
708 723 9.309224 ACACTAGTACCATATGCATGATTACTA 57.691 33.333 10.16 12.74 34.81 1.82
709 724 9.574458 CACTAGTACCATATGCATGATTACTAC 57.426 37.037 10.16 1.65 34.81 2.73
710 725 8.750298 ACTAGTACCATATGCATGATTACTACC 58.250 37.037 10.16 0.00 34.81 3.18
711 726 6.947464 AGTACCATATGCATGATTACTACCC 58.053 40.000 10.16 0.00 32.89 3.69
712 727 5.841267 ACCATATGCATGATTACTACCCA 57.159 39.130 10.16 0.00 33.67 4.51
713 728 6.392911 ACCATATGCATGATTACTACCCAT 57.607 37.500 10.16 0.00 33.67 4.00
714 729 6.793478 ACCATATGCATGATTACTACCCATT 58.207 36.000 10.16 0.00 33.67 3.16
715 730 7.927788 ACCATATGCATGATTACTACCCATTA 58.072 34.615 10.16 0.00 33.67 1.90
716 731 7.829211 ACCATATGCATGATTACTACCCATTAC 59.171 37.037 10.16 0.00 33.67 1.89
717 732 7.828717 CCATATGCATGATTACTACCCATTACA 59.171 37.037 10.16 0.00 33.67 2.41
718 733 9.230122 CATATGCATGATTACTACCCATTACAA 57.770 33.333 10.16 0.00 33.67 2.41
719 734 7.750229 ATGCATGATTACTACCCATTACAAG 57.250 36.000 0.00 0.00 0.00 3.16
720 735 5.530915 TGCATGATTACTACCCATTACAAGC 59.469 40.000 0.00 0.00 0.00 4.01
721 736 5.530915 GCATGATTACTACCCATTACAAGCA 59.469 40.000 0.00 0.00 0.00 3.91
722 737 6.293626 GCATGATTACTACCCATTACAAGCAG 60.294 42.308 0.00 0.00 0.00 4.24
723 738 5.123227 TGATTACTACCCATTACAAGCAGC 58.877 41.667 0.00 0.00 0.00 5.25
724 739 2.420058 ACTACCCATTACAAGCAGCC 57.580 50.000 0.00 0.00 0.00 4.85
725 740 1.916181 ACTACCCATTACAAGCAGCCT 59.084 47.619 0.00 0.00 0.00 4.58
726 741 3.112263 ACTACCCATTACAAGCAGCCTA 58.888 45.455 0.00 0.00 0.00 3.93
727 742 3.521937 ACTACCCATTACAAGCAGCCTAA 59.478 43.478 0.00 0.00 0.00 2.69
728 743 3.669939 ACCCATTACAAGCAGCCTAAT 57.330 42.857 0.00 0.00 0.00 1.73
729 744 3.981212 ACCCATTACAAGCAGCCTAATT 58.019 40.909 0.00 0.00 0.00 1.40
730 745 5.124036 ACCCATTACAAGCAGCCTAATTA 57.876 39.130 0.00 0.00 0.00 1.40
731 746 5.705400 ACCCATTACAAGCAGCCTAATTAT 58.295 37.500 0.00 0.00 0.00 1.28
732 747 5.770162 ACCCATTACAAGCAGCCTAATTATC 59.230 40.000 0.00 0.00 0.00 1.75
733 748 6.006449 CCCATTACAAGCAGCCTAATTATCT 58.994 40.000 0.00 0.00 0.00 1.98
734 749 6.150140 CCCATTACAAGCAGCCTAATTATCTC 59.850 42.308 0.00 0.00 0.00 2.75
735 750 6.939163 CCATTACAAGCAGCCTAATTATCTCT 59.061 38.462 0.00 0.00 0.00 3.10
736 751 7.094890 CCATTACAAGCAGCCTAATTATCTCTG 60.095 40.741 0.00 0.00 0.00 3.35
739 754 2.431454 GCAGCCTAATTATCTCTGCCC 58.569 52.381 16.57 0.00 42.98 5.36
740 755 2.877708 GCAGCCTAATTATCTCTGCCCC 60.878 54.545 16.57 0.00 42.98 5.80
741 756 1.988846 AGCCTAATTATCTCTGCCCCC 59.011 52.381 0.00 0.00 0.00 5.40
742 757 1.988846 GCCTAATTATCTCTGCCCCCT 59.011 52.381 0.00 0.00 0.00 4.79
743 758 2.376855 GCCTAATTATCTCTGCCCCCTT 59.623 50.000 0.00 0.00 0.00 3.95
744 759 3.812167 GCCTAATTATCTCTGCCCCCTTG 60.812 52.174 0.00 0.00 0.00 3.61
745 760 3.652869 CCTAATTATCTCTGCCCCCTTGA 59.347 47.826 0.00 0.00 0.00 3.02
746 761 4.290722 CCTAATTATCTCTGCCCCCTTGAT 59.709 45.833 0.00 0.00 0.00 2.57
747 762 4.821532 AATTATCTCTGCCCCCTTGATT 57.178 40.909 0.00 0.00 0.00 2.57
748 763 4.821532 ATTATCTCTGCCCCCTTGATTT 57.178 40.909 0.00 0.00 0.00 2.17
749 764 4.608170 TTATCTCTGCCCCCTTGATTTT 57.392 40.909 0.00 0.00 0.00 1.82
750 765 2.999185 TCTCTGCCCCCTTGATTTTT 57.001 45.000 0.00 0.00 0.00 1.94
751 766 4.608170 ATCTCTGCCCCCTTGATTTTTA 57.392 40.909 0.00 0.00 0.00 1.52
752 767 3.968265 TCTCTGCCCCCTTGATTTTTAG 58.032 45.455 0.00 0.00 0.00 1.85
753 768 3.026694 CTCTGCCCCCTTGATTTTTAGG 58.973 50.000 0.00 0.00 0.00 2.69
759 774 3.466395 CCCTTGATTTTTAGGGGTGGA 57.534 47.619 0.00 0.00 46.21 4.02
760 775 3.096852 CCCTTGATTTTTAGGGGTGGAC 58.903 50.000 0.00 0.00 46.21 4.02
761 776 3.096852 CCTTGATTTTTAGGGGTGGACC 58.903 50.000 0.00 0.00 39.11 4.46
774 789 2.044620 GGACCCCATCCTCCCCTT 59.955 66.667 0.00 0.00 45.22 3.95
775 790 1.320512 GGACCCCATCCTCCCCTTA 59.679 63.158 0.00 0.00 45.22 2.69
776 791 0.768609 GGACCCCATCCTCCCCTTAG 60.769 65.000 0.00 0.00 45.22 2.18
777 792 0.768609 GACCCCATCCTCCCCTTAGG 60.769 65.000 0.00 0.00 38.06 2.69
778 793 1.321943 CCCCATCCTCCCCTTAGGT 59.678 63.158 0.00 0.00 37.91 3.08
779 794 0.768609 CCCCATCCTCCCCTTAGGTC 60.769 65.000 0.00 0.00 37.91 3.85
780 795 0.768609 CCCATCCTCCCCTTAGGTCC 60.769 65.000 0.00 0.00 37.91 4.46
781 796 0.030092 CCATCCTCCCCTTAGGTCCA 60.030 60.000 0.00 0.00 37.91 4.02
782 797 1.628043 CCATCCTCCCCTTAGGTCCAA 60.628 57.143 0.00 0.00 37.91 3.53
783 798 2.422746 CATCCTCCCCTTAGGTCCAAT 58.577 52.381 0.00 0.00 37.91 3.16
784 799 3.598264 CATCCTCCCCTTAGGTCCAATA 58.402 50.000 0.00 0.00 37.91 1.90
785 800 3.346146 TCCTCCCCTTAGGTCCAATAG 57.654 52.381 0.00 0.00 37.91 1.73
786 801 2.595380 TCCTCCCCTTAGGTCCAATAGT 59.405 50.000 0.00 0.00 37.91 2.12
787 802 3.801317 TCCTCCCCTTAGGTCCAATAGTA 59.199 47.826 0.00 0.00 37.91 1.82
788 803 4.235873 TCCTCCCCTTAGGTCCAATAGTAA 59.764 45.833 0.00 0.00 37.91 2.24
789 804 5.102346 TCCTCCCCTTAGGTCCAATAGTAAT 60.102 44.000 0.00 0.00 37.91 1.89
790 805 5.248705 CCTCCCCTTAGGTCCAATAGTAATC 59.751 48.000 0.00 0.00 36.75 1.75
791 806 5.160386 TCCCCTTAGGTCCAATAGTAATCC 58.840 45.833 0.00 0.00 36.75 3.01
792 807 5.102346 TCCCCTTAGGTCCAATAGTAATCCT 60.102 44.000 0.00 0.00 36.75 3.24
793 808 5.248705 CCCCTTAGGTCCAATAGTAATCCTC 59.751 48.000 0.00 0.00 0.00 3.71
794 809 5.248705 CCCTTAGGTCCAATAGTAATCCTCC 59.751 48.000 0.00 0.00 0.00 4.30
795 810 5.844516 CCTTAGGTCCAATAGTAATCCTCCA 59.155 44.000 0.00 0.00 0.00 3.86
796 811 6.239629 CCTTAGGTCCAATAGTAATCCTCCAC 60.240 46.154 0.00 0.00 0.00 4.02
797 812 4.631234 AGGTCCAATAGTAATCCTCCACA 58.369 43.478 0.00 0.00 0.00 4.17
798 813 5.227593 AGGTCCAATAGTAATCCTCCACAT 58.772 41.667 0.00 0.00 0.00 3.21
799 814 6.390504 AGGTCCAATAGTAATCCTCCACATA 58.609 40.000 0.00 0.00 0.00 2.29
800 815 6.849697 AGGTCCAATAGTAATCCTCCACATAA 59.150 38.462 0.00 0.00 0.00 1.90
801 816 7.016661 AGGTCCAATAGTAATCCTCCACATAAG 59.983 40.741 0.00 0.00 0.00 1.73
802 817 7.202102 GGTCCAATAGTAATCCTCCACATAAGT 60.202 40.741 0.00 0.00 0.00 2.24
803 818 7.873505 GTCCAATAGTAATCCTCCACATAAGTC 59.126 40.741 0.00 0.00 0.00 3.01
804 819 7.789831 TCCAATAGTAATCCTCCACATAAGTCT 59.210 37.037 0.00 0.00 0.00 3.24
805 820 7.875041 CCAATAGTAATCCTCCACATAAGTCTG 59.125 40.741 0.00 0.00 0.00 3.51
806 821 8.424918 CAATAGTAATCCTCCACATAAGTCTGT 58.575 37.037 0.00 0.00 0.00 3.41
807 822 6.875972 AGTAATCCTCCACATAAGTCTGTT 57.124 37.500 0.00 0.00 0.00 3.16
808 823 7.973048 AGTAATCCTCCACATAAGTCTGTTA 57.027 36.000 0.00 0.00 0.00 2.41
809 824 7.783042 AGTAATCCTCCACATAAGTCTGTTAC 58.217 38.462 0.00 0.00 0.00 2.50
810 825 4.713824 TCCTCCACATAAGTCTGTTACG 57.286 45.455 0.00 0.00 0.00 3.18
811 826 4.084287 TCCTCCACATAAGTCTGTTACGT 58.916 43.478 0.00 0.00 0.00 3.57
812 827 5.255687 TCCTCCACATAAGTCTGTTACGTA 58.744 41.667 0.00 0.00 0.00 3.57
813 828 5.356190 TCCTCCACATAAGTCTGTTACGTAG 59.644 44.000 0.00 0.00 0.00 3.51
814 829 5.450137 CCTCCACATAAGTCTGTTACGTAGG 60.450 48.000 0.00 0.00 31.35 3.18
815 830 5.012239 TCCACATAAGTCTGTTACGTAGGT 58.988 41.667 0.00 0.00 37.51 3.08
816 831 5.124457 TCCACATAAGTCTGTTACGTAGGTC 59.876 44.000 0.00 0.00 35.36 3.85
817 832 5.125097 CCACATAAGTCTGTTACGTAGGTCT 59.875 44.000 0.00 0.00 35.36 3.85
818 833 6.317140 CCACATAAGTCTGTTACGTAGGTCTA 59.683 42.308 0.00 0.00 35.36 2.59
819 834 7.408123 CACATAAGTCTGTTACGTAGGTCTAG 58.592 42.308 0.00 0.00 35.36 2.43
820 835 4.961435 AAGTCTGTTACGTAGGTCTAGC 57.039 45.455 0.00 0.00 0.00 3.42
821 836 3.947868 AGTCTGTTACGTAGGTCTAGCA 58.052 45.455 0.00 0.00 0.00 3.49
822 837 4.525024 AGTCTGTTACGTAGGTCTAGCAT 58.475 43.478 0.00 0.00 0.00 3.79
823 838 4.948621 AGTCTGTTACGTAGGTCTAGCATT 59.051 41.667 0.00 0.00 0.00 3.56
824 839 5.035443 GTCTGTTACGTAGGTCTAGCATTG 58.965 45.833 0.00 0.00 0.00 2.82
825 840 3.777478 TGTTACGTAGGTCTAGCATTGC 58.223 45.455 0.00 0.00 0.00 3.56
826 841 3.446161 TGTTACGTAGGTCTAGCATTGCT 59.554 43.478 16.63 16.63 43.41 3.91
827 842 2.873133 ACGTAGGTCTAGCATTGCTC 57.127 50.000 15.81 0.36 40.44 4.26
931 947 2.406596 TAAATAGGCGTTCCCACACC 57.593 50.000 0.00 0.00 35.39 4.16
998 1014 0.603569 ACGAAGAATCTGTGGAGCGT 59.396 50.000 0.00 0.00 0.00 5.07
1064 1080 3.751570 CGTTGAGAAACGCCATTTTTG 57.248 42.857 0.00 0.00 39.43 2.44
1067 1083 4.735822 CGTTGAGAAACGCCATTTTTGTTA 59.264 37.500 0.00 0.00 39.43 2.41
1068 1084 5.331235 CGTTGAGAAACGCCATTTTTGTTAC 60.331 40.000 0.00 0.00 39.43 2.50
1069 1085 4.612943 TGAGAAACGCCATTTTTGTTACC 58.387 39.130 0.00 0.00 0.00 2.85
1073 1089 4.776795 AACGCCATTTTTGTTACCCTAG 57.223 40.909 0.00 0.00 0.00 3.02
1074 1090 3.758425 ACGCCATTTTTGTTACCCTAGT 58.242 40.909 0.00 0.00 0.00 2.57
1075 1091 3.504520 ACGCCATTTTTGTTACCCTAGTG 59.495 43.478 0.00 0.00 0.00 2.74
1076 1092 3.754323 CGCCATTTTTGTTACCCTAGTGA 59.246 43.478 0.00 0.00 0.00 3.41
1078 1094 4.082408 GCCATTTTTGTTACCCTAGTGACC 60.082 45.833 0.00 0.00 31.62 4.02
1080 1096 5.183140 CCATTTTTGTTACCCTAGTGACCTG 59.817 44.000 0.00 0.00 31.62 4.00
1081 1097 3.412237 TTTGTTACCCTAGTGACCTGC 57.588 47.619 0.00 0.00 31.62 4.85
1087 1103 2.834113 ACCCTAGTGACCTGCTAACAT 58.166 47.619 0.00 0.00 0.00 2.71
1100 1116 3.130633 TGCTAACATACTGCAATAGCCG 58.869 45.455 0.00 0.00 41.13 5.52
1102 1118 2.710096 AACATACTGCAATAGCCGGT 57.290 45.000 1.90 0.00 41.13 5.28
1105 1121 2.069273 CATACTGCAATAGCCGGTAGC 58.931 52.381 1.90 0.70 41.13 3.58
1130 1146 2.131183 CGTAGCTTGAAGATAGGCTGC 58.869 52.381 0.00 0.00 36.40 5.25
1131 1147 2.223923 CGTAGCTTGAAGATAGGCTGCT 60.224 50.000 0.00 0.00 35.78 4.24
1132 1148 2.618442 AGCTTGAAGATAGGCTGCTC 57.382 50.000 0.00 0.00 33.50 4.26
1133 1149 1.140652 AGCTTGAAGATAGGCTGCTCC 59.859 52.381 0.00 0.00 33.50 4.70
1134 1150 1.863267 CTTGAAGATAGGCTGCTCCG 58.137 55.000 0.00 0.00 40.77 4.63
1135 1151 1.410517 CTTGAAGATAGGCTGCTCCGA 59.589 52.381 0.00 0.00 40.77 4.55
1136 1152 1.035923 TGAAGATAGGCTGCTCCGAG 58.964 55.000 0.00 0.00 40.77 4.63
1137 1153 1.323412 GAAGATAGGCTGCTCCGAGA 58.677 55.000 0.00 0.00 40.77 4.04
1138 1154 1.269448 GAAGATAGGCTGCTCCGAGAG 59.731 57.143 0.00 0.00 40.77 3.20
1139 1155 0.476338 AGATAGGCTGCTCCGAGAGA 59.524 55.000 0.00 0.00 40.77 3.10
1140 1156 1.075374 AGATAGGCTGCTCCGAGAGAT 59.925 52.381 0.00 0.00 40.77 2.75
1141 1157 1.202114 GATAGGCTGCTCCGAGAGATG 59.798 57.143 0.00 0.00 40.77 2.90
1142 1158 0.183731 TAGGCTGCTCCGAGAGATGA 59.816 55.000 0.00 0.00 40.77 2.92
1143 1159 0.469705 AGGCTGCTCCGAGAGATGAT 60.470 55.000 0.00 0.00 40.77 2.45
1144 1160 0.319727 GGCTGCTCCGAGAGATGATG 60.320 60.000 0.00 0.00 0.00 3.07
1145 1161 0.319727 GCTGCTCCGAGAGATGATGG 60.320 60.000 0.00 0.00 0.00 3.51
1146 1162 0.317799 CTGCTCCGAGAGATGATGGG 59.682 60.000 0.00 0.00 0.00 4.00
1147 1163 0.397675 TGCTCCGAGAGATGATGGGT 60.398 55.000 0.00 0.00 0.00 4.51
1148 1164 0.755686 GCTCCGAGAGATGATGGGTT 59.244 55.000 0.00 0.00 0.00 4.11
1156 1172 2.092538 AGAGATGATGGGTTCTTGCCTG 60.093 50.000 0.00 0.00 0.00 4.85
1163 1179 1.239347 GGGTTCTTGCCTGACTGAAC 58.761 55.000 0.00 0.00 38.33 3.18
1169 1185 2.637382 TCTTGCCTGACTGAACCATGTA 59.363 45.455 0.00 0.00 0.00 2.29
1176 1192 4.318332 CTGACTGAACCATGTATGTGTGT 58.682 43.478 0.00 0.00 0.00 3.72
1177 1193 4.064388 TGACTGAACCATGTATGTGTGTG 58.936 43.478 0.00 0.00 0.00 3.82
1178 1194 2.813754 ACTGAACCATGTATGTGTGTGC 59.186 45.455 0.00 0.00 0.00 4.57
1179 1195 3.076621 CTGAACCATGTATGTGTGTGCT 58.923 45.455 0.00 0.00 0.00 4.40
1180 1196 2.813172 TGAACCATGTATGTGTGTGCTG 59.187 45.455 0.00 0.00 0.00 4.41
1321 1337 2.989253 TGCCGCTCCTTCGAGTCA 60.989 61.111 0.00 0.00 38.49 3.41
1360 1379 2.606717 GTAAGCTACCAAACGCAACC 57.393 50.000 0.00 0.00 0.00 3.77
1363 1382 0.179029 AGCTACCAAACGCAACCACT 60.179 50.000 0.00 0.00 0.00 4.00
1364 1383 0.040425 GCTACCAAACGCAACCACTG 60.040 55.000 0.00 0.00 0.00 3.66
1378 1397 1.343478 ACCACTGCCATACCTCTAGCT 60.343 52.381 0.00 0.00 0.00 3.32
1379 1398 1.069823 CCACTGCCATACCTCTAGCTG 59.930 57.143 0.00 0.00 0.00 4.24
1380 1399 0.755686 ACTGCCATACCTCTAGCTGC 59.244 55.000 0.00 0.00 0.00 5.25
1381 1400 0.755079 CTGCCATACCTCTAGCTGCA 59.245 55.000 1.02 0.00 0.00 4.41
1417 1442 2.842457 CTATGGCATCAACAGCAGCTA 58.158 47.619 1.65 0.00 0.00 3.32
1418 1443 1.676746 ATGGCATCAACAGCAGCTAG 58.323 50.000 0.00 0.00 0.00 3.42
1419 1444 0.325933 TGGCATCAACAGCAGCTAGT 59.674 50.000 0.00 0.00 0.00 2.57
1420 1445 1.271543 TGGCATCAACAGCAGCTAGTT 60.272 47.619 0.00 0.00 0.00 2.24
1431 1456 2.135933 GCAGCTAGTTGAACTGAACGT 58.864 47.619 11.20 0.00 33.10 3.99
1432 1457 2.544267 GCAGCTAGTTGAACTGAACGTT 59.456 45.455 11.20 0.00 38.91 3.99
1564 1653 3.044305 GCCGCCAGATATCACCGC 61.044 66.667 5.32 2.23 0.00 5.68
1601 1690 2.709475 GCGCTGCTCCGGTAATTG 59.291 61.111 0.00 0.00 0.00 2.32
1622 1711 2.234300 TGTTCTCCACTCCGTTCAAC 57.766 50.000 0.00 0.00 0.00 3.18
1625 1714 0.824595 TCTCCACTCCGTTCAACCGA 60.825 55.000 0.00 0.00 0.00 4.69
1657 1750 6.506538 ACCTCTTCTTAACATGGATGCTAT 57.493 37.500 0.00 0.00 0.00 2.97
1679 1772 0.537371 CTCCCGGCCAACTTTTCACT 60.537 55.000 2.24 0.00 0.00 3.41
1680 1773 0.536460 TCCCGGCCAACTTTTCACTC 60.536 55.000 2.24 0.00 0.00 3.51
1682 1775 0.310854 CCGGCCAACTTTTCACTCAC 59.689 55.000 2.24 0.00 0.00 3.51
1683 1776 1.308998 CGGCCAACTTTTCACTCACT 58.691 50.000 2.24 0.00 0.00 3.41
1685 1778 2.287009 CGGCCAACTTTTCACTCACTTC 60.287 50.000 2.24 0.00 0.00 3.01
1688 1781 4.142160 GGCCAACTTTTCACTCACTTCTTT 60.142 41.667 0.00 0.00 0.00 2.52
1689 1782 5.410924 GCCAACTTTTCACTCACTTCTTTT 58.589 37.500 0.00 0.00 0.00 2.27
1690 1783 5.289434 GCCAACTTTTCACTCACTTCTTTTG 59.711 40.000 0.00 0.00 0.00 2.44
1691 1784 6.389906 CCAACTTTTCACTCACTTCTTTTGT 58.610 36.000 0.00 0.00 0.00 2.83
1793 1933 2.997897 GGCTCGGTGGACCTCTGT 60.998 66.667 2.37 0.00 0.00 3.41
1882 2022 2.288579 CGGTCACAAACTACAGGTAGCA 60.289 50.000 6.38 0.00 36.66 3.49
1943 2083 6.938596 CAGGCAATGATCAACTAGATGGATTA 59.061 38.462 0.00 0.00 37.00 1.75
1967 2107 7.704789 ATTTTCTGAAGTGCAAAAGATCAAC 57.295 32.000 0.00 0.00 0.00 3.18
1999 2139 2.703007 GGCTCTTCAGGTATGAGGTGAT 59.297 50.000 0.00 0.00 36.61 3.06
2019 2159 3.144613 GGGATAAGGCCCGAGTACT 57.855 57.895 0.00 0.00 38.58 2.73
2195 2335 3.202818 TGGACTACCCAGCATTCATGATT 59.797 43.478 0.00 0.00 40.82 2.57
2248 2388 7.093684 ACAGTTTGTTCCTACTATCTCTTCCTC 60.094 40.741 0.00 0.00 0.00 3.71
2258 2398 4.718774 ACTATCTCTTCCTCAATTGCCTCA 59.281 41.667 0.00 0.00 0.00 3.86
2262 2402 5.139727 TCTCTTCCTCAATTGCCTCAAAAA 58.860 37.500 0.00 0.00 0.00 1.94
2302 2442 7.915293 AACAACAATTTATCTATGGACGTGA 57.085 32.000 0.00 0.00 0.00 4.35
2311 2451 1.825474 CTATGGACGTGAAGGGACACT 59.175 52.381 0.00 0.00 38.47 3.55
2396 2536 5.636903 AGCATATCTTGGGTATGTCACTT 57.363 39.130 0.00 0.00 33.19 3.16
2437 2577 2.278332 AACTCTCTGAACCCTTTGGC 57.722 50.000 0.00 0.00 33.59 4.52
2463 2603 1.959282 CCTAATGCTCAAGGGATTGCC 59.041 52.381 0.00 0.00 36.64 4.52
2768 2908 1.194547 CGACTGATGTTGGTTTGGTCG 59.805 52.381 0.00 0.00 38.86 4.79
2778 2918 2.623535 TGGTTTGGTCGTATTCCATCG 58.376 47.619 0.00 0.00 34.75 3.84
3070 3222 1.863454 GCAGAAGATCATACCTGTGCG 59.137 52.381 0.00 0.00 0.00 5.34
3073 3225 3.553511 CAGAAGATCATACCTGTGCGAAC 59.446 47.826 0.00 0.00 0.00 3.95
3096 3248 4.820173 CCAGTGATGATCTTGTATGTGCAT 59.180 41.667 0.00 0.00 0.00 3.96
3202 3354 7.549842 GGTCTTTCTTATCCTTTTGACTCCTAC 59.450 40.741 0.00 0.00 0.00 3.18
3360 3512 0.035056 AATCCGTCCTTGCCCTGAAG 60.035 55.000 0.00 0.00 0.00 3.02
3533 3685 5.772672 TGTTGTTTGTAACATCCAGCCTAAT 59.227 36.000 0.00 0.00 41.79 1.73
3548 3700 6.547141 TCCAGCCTAATTGATAACTTGGATTG 59.453 38.462 0.00 0.00 0.00 2.67
3643 3795 2.725815 GCGCCGCTTGTGTTGTTC 60.726 61.111 0.00 0.00 0.00 3.18
3644 3796 2.425124 CGCCGCTTGTGTTGTTCG 60.425 61.111 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 92 7.523293 TCCAAGAGATCATCTTAGCTAAGAG 57.477 40.000 33.25 25.49 46.91 2.85
113 115 6.430451 ACGTGAATTGTCTTGTCTTTCATTC 58.570 36.000 0.00 0.00 0.00 2.67
254 256 6.998074 TCCGTGCCATCTAGAAATGATTAAAT 59.002 34.615 0.00 0.00 0.00 1.40
255 257 6.353323 TCCGTGCCATCTAGAAATGATTAAA 58.647 36.000 0.00 0.00 0.00 1.52
256 258 5.924356 TCCGTGCCATCTAGAAATGATTAA 58.076 37.500 0.00 0.00 0.00 1.40
257 259 5.545063 TCCGTGCCATCTAGAAATGATTA 57.455 39.130 0.00 0.00 0.00 1.75
258 260 4.422073 TCCGTGCCATCTAGAAATGATT 57.578 40.909 0.00 0.00 0.00 2.57
259 261 4.130118 GTTCCGTGCCATCTAGAAATGAT 58.870 43.478 0.00 0.00 0.00 2.45
260 262 3.531538 GTTCCGTGCCATCTAGAAATGA 58.468 45.455 0.00 0.00 0.00 2.57
261 263 2.285220 CGTTCCGTGCCATCTAGAAATG 59.715 50.000 0.00 0.00 0.00 2.32
372 374 6.020281 CGCTGTTAATGATACAAGAGACTCAC 60.020 42.308 5.02 0.00 0.00 3.51
382 384 2.941720 TGCATGCGCTGTTAATGATACA 59.058 40.909 14.09 0.00 39.64 2.29
383 385 3.607422 TGCATGCGCTGTTAATGATAC 57.393 42.857 14.09 0.00 39.64 2.24
399 414 4.103785 AGGAATAACTAGACCTGCATGCAT 59.896 41.667 22.97 7.28 0.00 3.96
416 431 8.582437 CGTAGGTGTAGAATTATTGGAGGAATA 58.418 37.037 0.00 0.00 0.00 1.75
417 432 7.070821 ACGTAGGTGTAGAATTATTGGAGGAAT 59.929 37.037 0.00 0.00 0.00 3.01
418 433 6.381994 ACGTAGGTGTAGAATTATTGGAGGAA 59.618 38.462 0.00 0.00 0.00 3.36
419 434 5.895534 ACGTAGGTGTAGAATTATTGGAGGA 59.104 40.000 0.00 0.00 0.00 3.71
420 435 5.983720 CACGTAGGTGTAGAATTATTGGAGG 59.016 44.000 7.41 0.00 39.38 4.30
421 436 6.802608 TCACGTAGGTGTAGAATTATTGGAG 58.197 40.000 14.78 0.00 44.68 3.86
422 437 6.778834 TCACGTAGGTGTAGAATTATTGGA 57.221 37.500 14.78 0.00 44.68 3.53
423 438 7.039882 ACTTCACGTAGGTGTAGAATTATTGG 58.960 38.462 23.59 1.31 42.31 3.16
424 439 8.475331 AACTTCACGTAGGTGTAGAATTATTG 57.525 34.615 23.59 1.90 42.31 1.90
425 440 9.798994 CTAACTTCACGTAGGTGTAGAATTATT 57.201 33.333 23.59 12.35 42.31 1.40
426 441 7.919621 GCTAACTTCACGTAGGTGTAGAATTAT 59.080 37.037 23.59 10.07 42.31 1.28
427 442 7.094248 TGCTAACTTCACGTAGGTGTAGAATTA 60.094 37.037 23.59 13.77 42.31 1.40
428 443 6.098017 GCTAACTTCACGTAGGTGTAGAATT 58.902 40.000 23.59 13.45 42.31 2.17
429 444 5.184479 TGCTAACTTCACGTAGGTGTAGAAT 59.816 40.000 23.59 15.58 42.31 2.40
430 445 4.520111 TGCTAACTTCACGTAGGTGTAGAA 59.480 41.667 23.59 12.79 42.31 2.10
431 446 4.074259 TGCTAACTTCACGTAGGTGTAGA 58.926 43.478 23.59 6.37 42.31 2.59
432 447 4.430137 TGCTAACTTCACGTAGGTGTAG 57.570 45.455 17.43 17.43 44.43 2.74
433 448 4.852134 TTGCTAACTTCACGTAGGTGTA 57.148 40.909 14.78 5.16 44.68 2.90
434 449 3.738830 TTGCTAACTTCACGTAGGTGT 57.261 42.857 14.78 0.00 44.68 4.16
435 450 4.056050 ACTTTGCTAACTTCACGTAGGTG 58.944 43.478 9.30 9.30 45.78 4.00
436 451 4.332428 ACTTTGCTAACTTCACGTAGGT 57.668 40.909 0.00 0.00 0.00 3.08
437 452 5.668558 AAACTTTGCTAACTTCACGTAGG 57.331 39.130 0.00 0.00 0.00 3.18
438 453 6.784227 CGTAAAACTTTGCTAACTTCACGTAG 59.216 38.462 0.00 0.00 0.00 3.51
439 454 6.255453 ACGTAAAACTTTGCTAACTTCACGTA 59.745 34.615 0.00 0.00 36.14 3.57
440 455 5.063817 ACGTAAAACTTTGCTAACTTCACGT 59.936 36.000 0.00 0.00 33.39 4.49
441 456 5.495502 ACGTAAAACTTTGCTAACTTCACG 58.504 37.500 0.00 0.00 0.00 4.35
442 457 8.825064 TTTACGTAAAACTTTGCTAACTTCAC 57.175 30.769 18.10 0.00 0.00 3.18
443 458 9.654417 GATTTACGTAAAACTTTGCTAACTTCA 57.346 29.630 23.49 0.00 0.00 3.02
444 459 9.110617 GGATTTACGTAAAACTTTGCTAACTTC 57.889 33.333 23.49 11.74 0.00 3.01
445 460 8.843262 AGGATTTACGTAAAACTTTGCTAACTT 58.157 29.630 23.49 3.42 0.00 2.66
446 461 8.387190 AGGATTTACGTAAAACTTTGCTAACT 57.613 30.769 23.49 8.75 0.00 2.24
447 462 9.110617 GAAGGATTTACGTAAAACTTTGCTAAC 57.889 33.333 27.53 17.19 31.26 2.34
448 463 9.059260 AGAAGGATTTACGTAAAACTTTGCTAA 57.941 29.630 27.53 7.02 31.26 3.09
449 464 8.611654 AGAAGGATTTACGTAAAACTTTGCTA 57.388 30.769 27.53 7.61 31.26 3.49
450 465 7.308408 GGAGAAGGATTTACGTAAAACTTTGCT 60.308 37.037 27.53 23.10 31.26 3.91
451 466 6.800408 GGAGAAGGATTTACGTAAAACTTTGC 59.200 38.462 27.53 23.13 31.26 3.68
452 467 7.303261 GGGAGAAGGATTTACGTAAAACTTTG 58.697 38.462 27.53 0.00 31.26 2.77
453 468 6.432162 GGGGAGAAGGATTTACGTAAAACTTT 59.568 38.462 27.53 24.44 31.26 2.66
454 469 5.942236 GGGGAGAAGGATTTACGTAAAACTT 59.058 40.000 27.36 27.36 32.70 2.66
455 470 5.494724 GGGGAGAAGGATTTACGTAAAACT 58.505 41.667 23.49 20.20 0.00 2.66
456 471 4.330894 CGGGGAGAAGGATTTACGTAAAAC 59.669 45.833 23.49 20.19 0.00 2.43
457 472 4.506758 CGGGGAGAAGGATTTACGTAAAA 58.493 43.478 23.49 8.50 0.00 1.52
458 473 3.118665 CCGGGGAGAAGGATTTACGTAAA 60.119 47.826 22.12 22.12 0.00 2.01
459 474 2.431782 CCGGGGAGAAGGATTTACGTAA 59.568 50.000 3.29 3.29 0.00 3.18
460 475 2.034124 CCGGGGAGAAGGATTTACGTA 58.966 52.381 0.00 0.00 0.00 3.57
461 476 0.828677 CCGGGGAGAAGGATTTACGT 59.171 55.000 0.00 0.00 0.00 3.57
462 477 0.828677 ACCGGGGAGAAGGATTTACG 59.171 55.000 6.32 0.00 0.00 3.18
463 478 1.202498 CGACCGGGGAGAAGGATTTAC 60.202 57.143 6.32 0.00 0.00 2.01
464 479 1.117150 CGACCGGGGAGAAGGATTTA 58.883 55.000 6.32 0.00 0.00 1.40
465 480 0.908180 ACGACCGGGGAGAAGGATTT 60.908 55.000 6.32 0.00 0.00 2.17
466 481 0.032813 TACGACCGGGGAGAAGGATT 60.033 55.000 6.32 0.00 0.00 3.01
467 482 0.032813 TTACGACCGGGGAGAAGGAT 60.033 55.000 6.32 0.00 0.00 3.24
468 483 0.032813 ATTACGACCGGGGAGAAGGA 60.033 55.000 6.32 0.00 0.00 3.36
469 484 0.104304 CATTACGACCGGGGAGAAGG 59.896 60.000 6.32 0.00 0.00 3.46
470 485 1.108776 TCATTACGACCGGGGAGAAG 58.891 55.000 6.32 0.00 0.00 2.85
471 486 1.559368 TTCATTACGACCGGGGAGAA 58.441 50.000 6.32 0.00 0.00 2.87
472 487 1.479323 CTTTCATTACGACCGGGGAGA 59.521 52.381 6.32 0.00 0.00 3.71
473 488 1.206371 ACTTTCATTACGACCGGGGAG 59.794 52.381 6.32 0.00 0.00 4.30
474 489 1.269012 ACTTTCATTACGACCGGGGA 58.731 50.000 6.32 0.00 0.00 4.81
475 490 2.965572 TACTTTCATTACGACCGGGG 57.034 50.000 6.32 0.00 0.00 5.73
476 491 4.049546 TGATACTTTCATTACGACCGGG 57.950 45.455 6.32 0.00 0.00 5.73
477 492 5.345202 GCTATGATACTTTCATTACGACCGG 59.655 44.000 0.00 0.00 42.62 5.28
478 493 6.150318 AGCTATGATACTTTCATTACGACCG 58.850 40.000 0.00 0.00 42.62 4.79
479 494 8.298140 ACTAGCTATGATACTTTCATTACGACC 58.702 37.037 0.00 0.00 42.62 4.79
486 501 9.814899 GCATGATACTAGCTATGATACTTTCAT 57.185 33.333 0.00 0.00 46.86 2.57
487 502 8.806146 TGCATGATACTAGCTATGATACTTTCA 58.194 33.333 0.00 0.00 39.12 2.69
488 503 9.814899 ATGCATGATACTAGCTATGATACTTTC 57.185 33.333 0.00 0.00 0.00 2.62
491 506 8.855110 GGTATGCATGATACTAGCTATGATACT 58.145 37.037 10.16 0.00 37.64 2.12
492 507 8.633561 TGGTATGCATGATACTAGCTATGATAC 58.366 37.037 10.16 1.11 37.64 2.24
493 508 8.766994 TGGTATGCATGATACTAGCTATGATA 57.233 34.615 10.16 0.00 37.64 2.15
494 509 7.666063 TGGTATGCATGATACTAGCTATGAT 57.334 36.000 10.16 0.00 37.64 2.45
495 510 7.179160 ACTTGGTATGCATGATACTAGCTATGA 59.821 37.037 10.16 0.00 37.64 2.15
496 511 7.326454 ACTTGGTATGCATGATACTAGCTATG 58.674 38.462 10.16 0.00 37.64 2.23
497 512 7.487822 ACTTGGTATGCATGATACTAGCTAT 57.512 36.000 10.16 0.00 37.64 2.97
498 513 6.918067 ACTTGGTATGCATGATACTAGCTA 57.082 37.500 10.16 0.00 37.64 3.32
499 514 5.815233 ACTTGGTATGCATGATACTAGCT 57.185 39.130 10.16 0.00 37.64 3.32
500 515 6.809196 GTCTACTTGGTATGCATGATACTAGC 59.191 42.308 10.16 0.00 37.64 3.42
501 516 7.886338 TGTCTACTTGGTATGCATGATACTAG 58.114 38.462 10.16 5.68 37.64 2.57
502 517 7.833285 TGTCTACTTGGTATGCATGATACTA 57.167 36.000 10.16 0.00 37.64 1.82
503 518 6.731292 TGTCTACTTGGTATGCATGATACT 57.269 37.500 10.16 0.00 37.64 2.12
504 519 7.969536 ATTGTCTACTTGGTATGCATGATAC 57.030 36.000 10.16 0.00 36.87 2.24
505 520 8.978874 AAATTGTCTACTTGGTATGCATGATA 57.021 30.769 10.16 0.00 0.00 2.15
506 521 7.886629 AAATTGTCTACTTGGTATGCATGAT 57.113 32.000 10.16 0.00 0.00 2.45
507 522 7.392953 TCAAAATTGTCTACTTGGTATGCATGA 59.607 33.333 10.16 0.00 0.00 3.07
508 523 7.537715 TCAAAATTGTCTACTTGGTATGCATG 58.462 34.615 10.16 0.00 0.00 4.06
509 524 7.701539 TCAAAATTGTCTACTTGGTATGCAT 57.298 32.000 3.79 3.79 0.00 3.96
510 525 7.362834 CCATCAAAATTGTCTACTTGGTATGCA 60.363 37.037 0.00 0.00 0.00 3.96
511 526 6.974622 CCATCAAAATTGTCTACTTGGTATGC 59.025 38.462 0.00 0.00 0.00 3.14
512 527 7.970061 CACCATCAAAATTGTCTACTTGGTATG 59.030 37.037 0.00 0.00 33.38 2.39
513 528 7.669722 ACACCATCAAAATTGTCTACTTGGTAT 59.330 33.333 0.00 0.00 33.38 2.73
514 529 7.001674 ACACCATCAAAATTGTCTACTTGGTA 58.998 34.615 0.00 0.00 33.38 3.25
515 530 5.833131 ACACCATCAAAATTGTCTACTTGGT 59.167 36.000 0.00 0.00 35.41 3.67
516 531 6.151691 CACACCATCAAAATTGTCTACTTGG 58.848 40.000 0.00 0.00 0.00 3.61
517 532 6.151691 CCACACCATCAAAATTGTCTACTTG 58.848 40.000 0.00 0.00 0.00 3.16
518 533 5.278957 GCCACACCATCAAAATTGTCTACTT 60.279 40.000 0.00 0.00 0.00 2.24
519 534 4.218417 GCCACACCATCAAAATTGTCTACT 59.782 41.667 0.00 0.00 0.00 2.57
520 535 4.022416 TGCCACACCATCAAAATTGTCTAC 60.022 41.667 0.00 0.00 0.00 2.59
521 536 4.148079 TGCCACACCATCAAAATTGTCTA 58.852 39.130 0.00 0.00 0.00 2.59
522 537 2.964464 TGCCACACCATCAAAATTGTCT 59.036 40.909 0.00 0.00 0.00 3.41
523 538 3.383620 TGCCACACCATCAAAATTGTC 57.616 42.857 0.00 0.00 0.00 3.18
524 539 4.771577 TCTATGCCACACCATCAAAATTGT 59.228 37.500 0.00 0.00 0.00 2.71
525 540 5.327616 TCTATGCCACACCATCAAAATTG 57.672 39.130 0.00 0.00 0.00 2.32
526 541 5.999205 TTCTATGCCACACCATCAAAATT 57.001 34.783 0.00 0.00 0.00 1.82
527 542 6.549433 AATTCTATGCCACACCATCAAAAT 57.451 33.333 0.00 0.00 0.00 1.82
528 543 5.999205 AATTCTATGCCACACCATCAAAA 57.001 34.783 0.00 0.00 0.00 2.44
529 544 7.473735 TTTAATTCTATGCCACACCATCAAA 57.526 32.000 0.00 0.00 0.00 2.69
530 545 7.341512 TCATTTAATTCTATGCCACACCATCAA 59.658 33.333 0.00 0.00 0.00 2.57
531 546 6.832900 TCATTTAATTCTATGCCACACCATCA 59.167 34.615 0.00 0.00 0.00 3.07
532 547 7.275888 TCATTTAATTCTATGCCACACCATC 57.724 36.000 0.00 0.00 0.00 3.51
533 548 7.560991 TCTTCATTTAATTCTATGCCACACCAT 59.439 33.333 0.00 0.00 0.00 3.55
534 549 6.889177 TCTTCATTTAATTCTATGCCACACCA 59.111 34.615 0.00 0.00 0.00 4.17
535 550 7.333528 TCTTCATTTAATTCTATGCCACACC 57.666 36.000 0.00 0.00 0.00 4.16
536 551 9.294030 CTTTCTTCATTTAATTCTATGCCACAC 57.706 33.333 0.00 0.00 0.00 3.82
537 552 9.241919 TCTTTCTTCATTTAATTCTATGCCACA 57.758 29.630 0.00 0.00 0.00 4.17
538 553 9.727627 CTCTTTCTTCATTTAATTCTATGCCAC 57.272 33.333 0.00 0.00 0.00 5.01
539 554 9.685276 TCTCTTTCTTCATTTAATTCTATGCCA 57.315 29.630 0.00 0.00 0.00 4.92
548 563 9.525826 ACTCAACCATCTCTTTCTTCATTTAAT 57.474 29.630 0.00 0.00 0.00 1.40
549 564 8.924511 ACTCAACCATCTCTTTCTTCATTTAA 57.075 30.769 0.00 0.00 0.00 1.52
551 566 9.171877 GATACTCAACCATCTCTTTCTTCATTT 57.828 33.333 0.00 0.00 0.00 2.32
552 567 8.324306 TGATACTCAACCATCTCTTTCTTCATT 58.676 33.333 0.00 0.00 0.00 2.57
553 568 7.855375 TGATACTCAACCATCTCTTTCTTCAT 58.145 34.615 0.00 0.00 0.00 2.57
554 569 7.244886 TGATACTCAACCATCTCTTTCTTCA 57.755 36.000 0.00 0.00 0.00 3.02
555 570 9.255304 GTATGATACTCAACCATCTCTTTCTTC 57.745 37.037 0.00 0.00 0.00 2.87
556 571 8.762645 TGTATGATACTCAACCATCTCTTTCTT 58.237 33.333 4.03 0.00 0.00 2.52
557 572 8.311395 TGTATGATACTCAACCATCTCTTTCT 57.689 34.615 4.03 0.00 0.00 2.52
558 573 8.948631 TTGTATGATACTCAACCATCTCTTTC 57.051 34.615 4.03 0.00 0.00 2.62
559 574 9.334947 CATTGTATGATACTCAACCATCTCTTT 57.665 33.333 4.03 0.00 0.00 2.52
560 575 8.708378 TCATTGTATGATACTCAACCATCTCTT 58.292 33.333 4.03 0.00 33.59 2.85
561 576 8.255111 TCATTGTATGATACTCAACCATCTCT 57.745 34.615 4.03 0.00 33.59 3.10
600 615 8.453320 GCATGATACATAGTAGCATTGCATTTA 58.547 33.333 11.91 0.17 0.00 1.40
601 616 7.040271 TGCATGATACATAGTAGCATTGCATTT 60.040 33.333 18.86 0.00 29.60 2.32
602 617 6.431852 TGCATGATACATAGTAGCATTGCATT 59.568 34.615 18.86 0.00 29.60 3.56
603 618 5.941647 TGCATGATACATAGTAGCATTGCAT 59.058 36.000 18.86 0.00 29.60 3.96
604 619 5.307204 TGCATGATACATAGTAGCATTGCA 58.693 37.500 18.86 18.86 30.91 4.08
605 620 5.868043 TGCATGATACATAGTAGCATTGC 57.132 39.130 15.86 15.86 0.00 3.56
606 621 7.118680 TGTCATGCATGATACATAGTAGCATTG 59.881 37.037 30.89 0.00 39.00 2.82
607 622 7.163441 TGTCATGCATGATACATAGTAGCATT 58.837 34.615 30.89 0.00 39.00 3.56
608 623 6.704310 TGTCATGCATGATACATAGTAGCAT 58.296 36.000 30.89 2.37 41.42 3.79
609 624 6.100404 TGTCATGCATGATACATAGTAGCA 57.900 37.500 30.89 17.20 39.30 3.49
610 625 7.606858 ATTGTCATGCATGATACATAGTAGC 57.393 36.000 30.89 14.90 39.30 3.58
621 636 9.955208 GATGACTTTATTTATTGTCATGCATGA 57.045 29.630 25.42 25.42 46.22 3.07
622 637 9.961265 AGATGACTTTATTTATTGTCATGCATG 57.039 29.630 21.07 21.07 46.22 4.06
666 681 8.424918 GGTACTAGTGTGTGATACTACCTAGTA 58.575 40.741 5.39 0.00 42.43 1.82
667 682 7.092712 TGGTACTAGTGTGTGATACTACCTAGT 60.093 40.741 5.39 0.00 38.43 2.57
668 683 7.278135 TGGTACTAGTGTGTGATACTACCTAG 58.722 42.308 5.39 0.00 30.42 3.02
669 684 7.199167 TGGTACTAGTGTGTGATACTACCTA 57.801 40.000 5.39 0.00 30.42 3.08
670 685 6.070951 TGGTACTAGTGTGTGATACTACCT 57.929 41.667 5.39 0.00 30.42 3.08
671 686 6.956202 ATGGTACTAGTGTGTGATACTACC 57.044 41.667 5.39 1.23 0.00 3.18
672 687 8.021973 GCATATGGTACTAGTGTGTGATACTAC 58.978 40.741 5.39 0.00 0.00 2.73
673 688 7.722285 TGCATATGGTACTAGTGTGTGATACTA 59.278 37.037 5.39 0.00 0.00 1.82
674 689 6.549736 TGCATATGGTACTAGTGTGTGATACT 59.450 38.462 5.39 0.00 0.00 2.12
675 690 6.745116 TGCATATGGTACTAGTGTGTGATAC 58.255 40.000 5.39 0.00 0.00 2.24
676 691 6.969993 TGCATATGGTACTAGTGTGTGATA 57.030 37.500 5.39 0.00 0.00 2.15
677 692 5.869649 TGCATATGGTACTAGTGTGTGAT 57.130 39.130 5.39 0.00 0.00 3.06
678 693 5.362430 TCATGCATATGGTACTAGTGTGTGA 59.638 40.000 5.39 0.00 34.97 3.58
679 694 5.600696 TCATGCATATGGTACTAGTGTGTG 58.399 41.667 5.39 0.00 34.97 3.82
680 695 5.869649 TCATGCATATGGTACTAGTGTGT 57.130 39.130 5.39 0.00 34.97 3.72
681 696 8.090831 AGTAATCATGCATATGGTACTAGTGTG 58.909 37.037 5.39 0.00 35.56 3.82
682 697 8.195165 AGTAATCATGCATATGGTACTAGTGT 57.805 34.615 5.39 0.00 35.56 3.55
683 698 9.574458 GTAGTAATCATGCATATGGTACTAGTG 57.426 37.037 5.39 0.00 37.85 2.74
684 699 8.750298 GGTAGTAATCATGCATATGGTACTAGT 58.250 37.037 14.35 0.00 37.85 2.57
685 700 8.198109 GGGTAGTAATCATGCATATGGTACTAG 58.802 40.741 14.35 0.00 37.85 2.57
686 701 7.676468 TGGGTAGTAATCATGCATATGGTACTA 59.324 37.037 0.00 6.74 37.09 1.82
687 702 6.500400 TGGGTAGTAATCATGCATATGGTACT 59.500 38.462 0.00 7.70 38.25 2.73
688 703 6.707290 TGGGTAGTAATCATGCATATGGTAC 58.293 40.000 0.00 0.00 34.97 3.34
689 704 6.943899 TGGGTAGTAATCATGCATATGGTA 57.056 37.500 0.00 0.00 34.97 3.25
690 705 5.841267 TGGGTAGTAATCATGCATATGGT 57.159 39.130 0.00 0.00 34.97 3.55
691 706 7.828717 TGTAATGGGTAGTAATCATGCATATGG 59.171 37.037 0.00 0.00 34.97 2.74
692 707 8.791327 TGTAATGGGTAGTAATCATGCATATG 57.209 34.615 0.00 0.00 35.57 1.78
693 708 9.453572 CTTGTAATGGGTAGTAATCATGCATAT 57.546 33.333 0.00 0.00 0.00 1.78
694 709 7.390440 GCTTGTAATGGGTAGTAATCATGCATA 59.610 37.037 0.00 0.00 0.00 3.14
695 710 6.207417 GCTTGTAATGGGTAGTAATCATGCAT 59.793 38.462 0.00 0.00 0.00 3.96
696 711 5.530915 GCTTGTAATGGGTAGTAATCATGCA 59.469 40.000 0.00 0.00 0.00 3.96
697 712 5.530915 TGCTTGTAATGGGTAGTAATCATGC 59.469 40.000 0.00 0.00 0.00 4.06
698 713 6.293626 GCTGCTTGTAATGGGTAGTAATCATG 60.294 42.308 0.00 0.00 0.00 3.07
699 714 5.765182 GCTGCTTGTAATGGGTAGTAATCAT 59.235 40.000 0.00 0.00 0.00 2.45
700 715 5.123227 GCTGCTTGTAATGGGTAGTAATCA 58.877 41.667 0.00 0.00 0.00 2.57
701 716 4.515567 GGCTGCTTGTAATGGGTAGTAATC 59.484 45.833 0.00 0.00 0.00 1.75
702 717 4.166144 AGGCTGCTTGTAATGGGTAGTAAT 59.834 41.667 0.00 0.00 0.00 1.89
703 718 3.521937 AGGCTGCTTGTAATGGGTAGTAA 59.478 43.478 0.00 0.00 0.00 2.24
704 719 3.112263 AGGCTGCTTGTAATGGGTAGTA 58.888 45.455 0.00 0.00 0.00 1.82
705 720 1.916181 AGGCTGCTTGTAATGGGTAGT 59.084 47.619 0.00 0.00 0.00 2.73
706 721 2.717639 AGGCTGCTTGTAATGGGTAG 57.282 50.000 0.00 0.00 0.00 3.18
707 722 4.788925 ATTAGGCTGCTTGTAATGGGTA 57.211 40.909 0.00 0.00 0.00 3.69
708 723 3.669939 ATTAGGCTGCTTGTAATGGGT 57.330 42.857 0.00 0.00 0.00 4.51
709 724 6.006449 AGATAATTAGGCTGCTTGTAATGGG 58.994 40.000 0.00 0.00 0.00 4.00
710 725 6.939163 AGAGATAATTAGGCTGCTTGTAATGG 59.061 38.462 0.00 0.00 0.00 3.16
711 726 7.572724 GCAGAGATAATTAGGCTGCTTGTAATG 60.573 40.741 20.76 0.00 46.17 1.90
712 727 6.429385 GCAGAGATAATTAGGCTGCTTGTAAT 59.571 38.462 20.76 0.00 46.17 1.89
713 728 5.760253 GCAGAGATAATTAGGCTGCTTGTAA 59.240 40.000 20.76 0.00 46.17 2.41
714 729 5.300752 GCAGAGATAATTAGGCTGCTTGTA 58.699 41.667 20.76 0.00 46.17 2.41
715 730 4.133078 GCAGAGATAATTAGGCTGCTTGT 58.867 43.478 20.76 0.00 46.17 3.16
716 731 4.745837 GCAGAGATAATTAGGCTGCTTG 57.254 45.455 20.76 8.47 46.17 4.01
720 735 2.290577 GGGGGCAGAGATAATTAGGCTG 60.291 54.545 0.00 7.34 0.00 4.85
721 736 1.988846 GGGGGCAGAGATAATTAGGCT 59.011 52.381 0.00 0.00 0.00 4.58
722 737 1.988846 AGGGGGCAGAGATAATTAGGC 59.011 52.381 0.00 0.00 0.00 3.93
723 738 3.652869 TCAAGGGGGCAGAGATAATTAGG 59.347 47.826 0.00 0.00 0.00 2.69
724 739 4.982241 TCAAGGGGGCAGAGATAATTAG 57.018 45.455 0.00 0.00 0.00 1.73
725 740 5.930209 AATCAAGGGGGCAGAGATAATTA 57.070 39.130 0.00 0.00 0.00 1.40
726 741 4.821532 AATCAAGGGGGCAGAGATAATT 57.178 40.909 0.00 0.00 0.00 1.40
727 742 4.821532 AAATCAAGGGGGCAGAGATAAT 57.178 40.909 0.00 0.00 0.00 1.28
728 743 4.608170 AAAATCAAGGGGGCAGAGATAA 57.392 40.909 0.00 0.00 0.00 1.75
729 744 4.608170 AAAAATCAAGGGGGCAGAGATA 57.392 40.909 0.00 0.00 0.00 1.98
730 745 3.479866 AAAAATCAAGGGGGCAGAGAT 57.520 42.857 0.00 0.00 0.00 2.75
731 746 2.999185 AAAAATCAAGGGGGCAGAGA 57.001 45.000 0.00 0.00 0.00 3.10
732 747 3.026694 CCTAAAAATCAAGGGGGCAGAG 58.973 50.000 0.00 0.00 0.00 3.35
733 748 3.100207 CCTAAAAATCAAGGGGGCAGA 57.900 47.619 0.00 0.00 0.00 4.26
740 755 3.096852 GGTCCACCCCTAAAAATCAAGG 58.903 50.000 0.00 0.00 0.00 3.61
758 773 0.768609 CCTAAGGGGAGGATGGGGTC 60.769 65.000 0.00 0.00 39.15 4.46
759 774 1.321943 CCTAAGGGGAGGATGGGGT 59.678 63.158 0.00 0.00 39.15 4.95
760 775 0.768609 GACCTAAGGGGAGGATGGGG 60.769 65.000 0.00 0.00 39.15 4.96
761 776 0.768609 GGACCTAAGGGGAGGATGGG 60.769 65.000 0.00 0.00 39.15 4.00
762 777 0.030092 TGGACCTAAGGGGAGGATGG 60.030 60.000 0.00 0.00 39.15 3.51
763 778 1.893315 TTGGACCTAAGGGGAGGATG 58.107 55.000 0.00 0.00 39.15 3.51
764 779 2.918774 ATTGGACCTAAGGGGAGGAT 57.081 50.000 0.00 0.00 39.15 3.24
765 780 2.595380 ACTATTGGACCTAAGGGGAGGA 59.405 50.000 0.00 0.00 39.15 3.71
766 781 3.061909 ACTATTGGACCTAAGGGGAGG 57.938 52.381 0.00 0.00 42.89 4.30
767 782 5.248705 GGATTACTATTGGACCTAAGGGGAG 59.751 48.000 0.00 0.00 38.76 4.30
768 783 5.102346 AGGATTACTATTGGACCTAAGGGGA 60.102 44.000 0.00 0.00 38.76 4.81
769 784 5.163390 AGGATTACTATTGGACCTAAGGGG 58.837 45.833 0.00 0.00 41.89 4.79
770 785 5.248705 GGAGGATTACTATTGGACCTAAGGG 59.751 48.000 0.00 0.00 38.88 3.95
771 786 5.844516 TGGAGGATTACTATTGGACCTAAGG 59.155 44.000 0.00 0.00 0.00 2.69
772 787 6.326583 TGTGGAGGATTACTATTGGACCTAAG 59.673 42.308 0.00 0.00 0.00 2.18
773 788 6.206787 TGTGGAGGATTACTATTGGACCTAA 58.793 40.000 0.00 0.00 0.00 2.69
774 789 5.784023 TGTGGAGGATTACTATTGGACCTA 58.216 41.667 0.00 0.00 0.00 3.08
775 790 4.631234 TGTGGAGGATTACTATTGGACCT 58.369 43.478 0.00 0.00 0.00 3.85
776 791 5.568620 ATGTGGAGGATTACTATTGGACC 57.431 43.478 0.00 0.00 0.00 4.46
777 792 7.736893 ACTTATGTGGAGGATTACTATTGGAC 58.263 38.462 0.00 0.00 0.00 4.02
778 793 7.789831 AGACTTATGTGGAGGATTACTATTGGA 59.210 37.037 0.00 0.00 0.00 3.53
779 794 7.875041 CAGACTTATGTGGAGGATTACTATTGG 59.125 40.741 0.00 0.00 0.00 3.16
780 795 8.424918 ACAGACTTATGTGGAGGATTACTATTG 58.575 37.037 0.00 0.00 30.46 1.90
781 796 8.554490 ACAGACTTATGTGGAGGATTACTATT 57.446 34.615 0.00 0.00 30.46 1.73
782 797 8.554490 AACAGACTTATGTGGAGGATTACTAT 57.446 34.615 0.00 0.00 32.52 2.12
783 798 7.973048 AACAGACTTATGTGGAGGATTACTA 57.027 36.000 0.00 0.00 32.52 1.82
784 799 6.875972 AACAGACTTATGTGGAGGATTACT 57.124 37.500 0.00 0.00 32.52 2.24
785 800 6.696148 CGTAACAGACTTATGTGGAGGATTAC 59.304 42.308 0.00 0.00 32.52 1.89
786 801 6.379133 ACGTAACAGACTTATGTGGAGGATTA 59.621 38.462 0.00 0.00 32.52 1.75
787 802 5.187186 ACGTAACAGACTTATGTGGAGGATT 59.813 40.000 0.00 0.00 32.52 3.01
788 803 4.710375 ACGTAACAGACTTATGTGGAGGAT 59.290 41.667 0.00 0.00 32.52 3.24
789 804 4.084287 ACGTAACAGACTTATGTGGAGGA 58.916 43.478 0.00 0.00 32.52 3.71
790 805 4.451629 ACGTAACAGACTTATGTGGAGG 57.548 45.455 0.00 0.00 32.52 4.30
791 806 5.125097 ACCTACGTAACAGACTTATGTGGAG 59.875 44.000 0.00 0.00 32.52 3.86
792 807 5.012239 ACCTACGTAACAGACTTATGTGGA 58.988 41.667 0.00 0.00 32.52 4.02
793 808 5.125097 AGACCTACGTAACAGACTTATGTGG 59.875 44.000 0.00 0.00 32.52 4.17
794 809 6.192234 AGACCTACGTAACAGACTTATGTG 57.808 41.667 0.00 0.00 32.52 3.21
795 810 6.038050 GCTAGACCTACGTAACAGACTTATGT 59.962 42.308 0.00 0.00 33.96 2.29
796 811 6.037940 TGCTAGACCTACGTAACAGACTTATG 59.962 42.308 0.00 0.00 0.00 1.90
797 812 6.118170 TGCTAGACCTACGTAACAGACTTAT 58.882 40.000 0.00 0.00 0.00 1.73
798 813 5.491070 TGCTAGACCTACGTAACAGACTTA 58.509 41.667 0.00 0.00 0.00 2.24
799 814 4.330250 TGCTAGACCTACGTAACAGACTT 58.670 43.478 0.00 0.00 0.00 3.01
800 815 3.947868 TGCTAGACCTACGTAACAGACT 58.052 45.455 0.00 0.00 0.00 3.24
801 816 4.897025 ATGCTAGACCTACGTAACAGAC 57.103 45.455 0.00 0.00 0.00 3.51
802 817 4.439700 GCAATGCTAGACCTACGTAACAGA 60.440 45.833 0.00 0.00 0.00 3.41
803 818 3.797256 GCAATGCTAGACCTACGTAACAG 59.203 47.826 0.00 0.00 0.00 3.16
804 819 3.446161 AGCAATGCTAGACCTACGTAACA 59.554 43.478 5.69 0.00 36.99 2.41
805 820 4.043037 AGCAATGCTAGACCTACGTAAC 57.957 45.455 5.69 0.00 36.99 2.50
806 821 3.952323 AGAGCAATGCTAGACCTACGTAA 59.048 43.478 8.12 0.00 39.88 3.18
807 822 3.552875 AGAGCAATGCTAGACCTACGTA 58.447 45.455 8.12 0.00 39.88 3.57
808 823 2.379972 AGAGCAATGCTAGACCTACGT 58.620 47.619 8.12 0.00 39.88 3.57
809 824 3.444703 AAGAGCAATGCTAGACCTACG 57.555 47.619 8.12 0.00 39.88 3.51
810 825 5.929415 GGAATAAGAGCAATGCTAGACCTAC 59.071 44.000 8.12 0.00 39.88 3.18
811 826 5.841237 AGGAATAAGAGCAATGCTAGACCTA 59.159 40.000 8.12 0.00 39.88 3.08
812 827 4.657969 AGGAATAAGAGCAATGCTAGACCT 59.342 41.667 8.12 8.69 39.88 3.85
813 828 4.967036 AGGAATAAGAGCAATGCTAGACC 58.033 43.478 8.12 6.50 39.88 3.85
814 829 5.605534 TGAGGAATAAGAGCAATGCTAGAC 58.394 41.667 8.12 0.00 39.88 2.59
815 830 5.600069 TCTGAGGAATAAGAGCAATGCTAGA 59.400 40.000 8.12 0.00 39.88 2.43
816 831 5.851720 TCTGAGGAATAAGAGCAATGCTAG 58.148 41.667 8.12 0.00 39.88 3.42
817 832 5.876651 TCTGAGGAATAAGAGCAATGCTA 57.123 39.130 8.12 0.00 39.88 3.49
818 833 4.767578 TCTGAGGAATAAGAGCAATGCT 57.232 40.909 7.79 7.79 43.88 3.79
819 834 5.278364 CCATTCTGAGGAATAAGAGCAATGC 60.278 44.000 0.00 0.00 39.87 3.56
820 835 6.060136 TCCATTCTGAGGAATAAGAGCAATG 58.940 40.000 0.00 0.00 39.87 2.82
821 836 6.257994 TCCATTCTGAGGAATAAGAGCAAT 57.742 37.500 0.00 0.00 39.87 3.56
822 837 5.678583 CTCCATTCTGAGGAATAAGAGCAA 58.321 41.667 0.00 0.00 39.87 3.91
823 838 5.287674 CTCCATTCTGAGGAATAAGAGCA 57.712 43.478 0.00 0.00 39.87 4.26
825 840 5.287674 TGCTCCATTCTGAGGAATAAGAG 57.712 43.478 10.79 10.79 39.87 2.85
826 841 5.698741 TTGCTCCATTCTGAGGAATAAGA 57.301 39.130 0.00 0.00 39.87 2.10
931 947 1.079127 AGGTTGGCGAGGATGAACG 60.079 57.895 0.00 0.00 0.00 3.95
998 1014 0.907486 CTCCCTTCTGCTGTCCATCA 59.093 55.000 0.00 0.00 0.00 3.07
1064 1080 3.512724 TGTTAGCAGGTCACTAGGGTAAC 59.487 47.826 0.00 0.00 41.85 2.50
1067 1083 2.320681 TGTTAGCAGGTCACTAGGGT 57.679 50.000 0.00 0.00 0.00 4.34
1068 1084 3.961408 AGTATGTTAGCAGGTCACTAGGG 59.039 47.826 0.00 0.00 0.00 3.53
1069 1085 4.737946 GCAGTATGTTAGCAGGTCACTAGG 60.738 50.000 0.00 0.00 39.31 3.02
1073 1089 2.972625 TGCAGTATGTTAGCAGGTCAC 58.027 47.619 0.00 0.00 39.31 3.67
1074 1090 3.694043 TTGCAGTATGTTAGCAGGTCA 57.306 42.857 0.00 0.00 39.72 4.02
1075 1091 4.212214 GCTATTGCAGTATGTTAGCAGGTC 59.788 45.833 0.00 0.00 39.39 3.85
1076 1092 4.130118 GCTATTGCAGTATGTTAGCAGGT 58.870 43.478 0.00 0.00 39.39 4.00
1078 1094 3.185188 CGGCTATTGCAGTATGTTAGCAG 59.815 47.826 0.66 0.00 40.48 4.24
1080 1096 2.480419 CCGGCTATTGCAGTATGTTAGC 59.520 50.000 0.66 0.00 41.91 3.09
1081 1097 3.728845 ACCGGCTATTGCAGTATGTTAG 58.271 45.455 0.00 0.00 41.91 2.34
1087 1103 0.031585 CGCTACCGGCTATTGCAGTA 59.968 55.000 0.00 1.68 41.91 2.74
1100 1116 0.734942 TCAAGCTACGCAACGCTACC 60.735 55.000 0.00 0.00 34.96 3.18
1102 1118 1.068125 TCTTCAAGCTACGCAACGCTA 60.068 47.619 0.00 0.00 34.96 4.26
1105 1121 2.535984 CCTATCTTCAAGCTACGCAACG 59.464 50.000 0.00 0.00 0.00 4.10
1106 1122 2.285488 GCCTATCTTCAAGCTACGCAAC 59.715 50.000 0.00 0.00 0.00 4.17
1107 1123 2.168521 AGCCTATCTTCAAGCTACGCAA 59.831 45.455 0.00 0.00 32.73 4.85
1108 1124 1.757118 AGCCTATCTTCAAGCTACGCA 59.243 47.619 0.00 0.00 32.73 5.24
1110 1126 2.131183 GCAGCCTATCTTCAAGCTACG 58.869 52.381 0.00 0.00 33.33 3.51
1111 1127 3.389221 GAGCAGCCTATCTTCAAGCTAC 58.611 50.000 0.00 0.00 33.33 3.58
1112 1128 2.366916 GGAGCAGCCTATCTTCAAGCTA 59.633 50.000 0.00 0.00 33.33 3.32
1115 1131 1.410517 TCGGAGCAGCCTATCTTCAAG 59.589 52.381 0.00 0.00 0.00 3.02
1117 1133 1.035923 CTCGGAGCAGCCTATCTTCA 58.964 55.000 0.00 0.00 0.00 3.02
1120 1136 0.476338 TCTCTCGGAGCAGCCTATCT 59.524 55.000 0.00 0.00 0.00 1.98
1122 1138 1.202989 TCATCTCTCGGAGCAGCCTAT 60.203 52.381 0.00 0.00 0.00 2.57
1124 1140 0.469705 ATCATCTCTCGGAGCAGCCT 60.470 55.000 0.00 0.00 0.00 4.58
1126 1142 0.319727 CCATCATCTCTCGGAGCAGC 60.320 60.000 0.00 0.00 0.00 5.25
1127 1143 0.317799 CCCATCATCTCTCGGAGCAG 59.682 60.000 0.00 0.00 0.00 4.24
1128 1144 0.397675 ACCCATCATCTCTCGGAGCA 60.398 55.000 0.00 0.00 0.00 4.26
1129 1145 0.755686 AACCCATCATCTCTCGGAGC 59.244 55.000 0.00 0.00 0.00 4.70
1130 1146 2.315176 AGAACCCATCATCTCTCGGAG 58.685 52.381 0.00 0.00 0.00 4.63
1131 1147 2.432146 CAAGAACCCATCATCTCTCGGA 59.568 50.000 0.00 0.00 0.00 4.55
1132 1148 2.831333 CAAGAACCCATCATCTCTCGG 58.169 52.381 0.00 0.00 0.00 4.63
1133 1149 2.208431 GCAAGAACCCATCATCTCTCG 58.792 52.381 0.00 0.00 0.00 4.04
1134 1150 2.172293 AGGCAAGAACCCATCATCTCTC 59.828 50.000 0.00 0.00 0.00 3.20
1135 1151 2.092538 CAGGCAAGAACCCATCATCTCT 60.093 50.000 0.00 0.00 0.00 3.10
1136 1152 2.092753 TCAGGCAAGAACCCATCATCTC 60.093 50.000 0.00 0.00 0.00 2.75
1137 1153 1.918262 TCAGGCAAGAACCCATCATCT 59.082 47.619 0.00 0.00 0.00 2.90
1138 1154 2.019984 GTCAGGCAAGAACCCATCATC 58.980 52.381 0.00 0.00 0.00 2.92
1139 1155 1.637553 AGTCAGGCAAGAACCCATCAT 59.362 47.619 0.00 0.00 0.00 2.45
1140 1156 1.067295 AGTCAGGCAAGAACCCATCA 58.933 50.000 0.00 0.00 0.00 3.07
1141 1157 1.003580 TCAGTCAGGCAAGAACCCATC 59.996 52.381 0.00 0.00 0.00 3.51
1142 1158 1.067295 TCAGTCAGGCAAGAACCCAT 58.933 50.000 0.00 0.00 0.00 4.00
1143 1159 0.843309 TTCAGTCAGGCAAGAACCCA 59.157 50.000 0.00 0.00 0.00 4.51
1144 1160 1.239347 GTTCAGTCAGGCAAGAACCC 58.761 55.000 0.00 0.00 35.52 4.11
1146 1162 1.967319 TGGTTCAGTCAGGCAAGAAC 58.033 50.000 2.60 2.60 39.59 3.01
1147 1163 2.158623 ACATGGTTCAGTCAGGCAAGAA 60.159 45.455 0.00 0.00 0.00 2.52
1148 1164 1.421268 ACATGGTTCAGTCAGGCAAGA 59.579 47.619 0.00 0.00 0.00 3.02
1156 1172 3.120199 GCACACACATACATGGTTCAGTC 60.120 47.826 0.00 0.00 0.00 3.51
1163 1179 2.153645 ACACAGCACACACATACATGG 58.846 47.619 0.00 0.00 0.00 3.66
1169 1185 1.543208 CCTGGTACACAGCACACACAT 60.543 52.381 0.00 0.00 46.14 3.21
1176 1192 1.488812 ACTTGTTCCTGGTACACAGCA 59.511 47.619 5.58 0.00 46.14 4.41
1177 1193 1.873591 CACTTGTTCCTGGTACACAGC 59.126 52.381 5.58 0.00 46.14 4.40
1179 1195 1.488812 AGCACTTGTTCCTGGTACACA 59.511 47.619 5.58 0.00 0.00 3.72
1180 1196 2.143925 GAGCACTTGTTCCTGGTACAC 58.856 52.381 5.58 0.00 0.00 2.90
1321 1337 1.326213 CGATGAGGTGCTCCCTGAGT 61.326 60.000 0.00 0.00 46.51 3.41
1360 1379 1.539929 GCAGCTAGAGGTATGGCAGTG 60.540 57.143 0.00 0.00 0.00 3.66
1363 1382 1.071228 CATGCAGCTAGAGGTATGGCA 59.929 52.381 0.00 0.00 0.00 4.92
1364 1383 1.805869 CATGCAGCTAGAGGTATGGC 58.194 55.000 0.00 0.00 0.00 4.40
1368 1387 2.027285 TGTTTGCATGCAGCTAGAGGTA 60.027 45.455 21.50 0.00 45.94 3.08
1370 1389 1.456296 TGTTTGCATGCAGCTAGAGG 58.544 50.000 21.50 0.00 45.94 3.69
1378 1397 5.413523 CCATAGCTATAGATGTTTGCATGCA 59.586 40.000 18.46 18.46 35.07 3.96
1379 1398 5.675575 GCCATAGCTATAGATGTTTGCATGC 60.676 44.000 11.82 11.82 33.62 4.06
1380 1399 5.413523 TGCCATAGCTATAGATGTTTGCATG 59.586 40.000 5.77 0.00 40.80 4.06
1381 1400 5.563592 TGCCATAGCTATAGATGTTTGCAT 58.436 37.500 5.77 0.00 40.80 3.96
1417 1442 1.940613 GGAGCAACGTTCAGTTCAACT 59.059 47.619 0.00 0.00 42.02 3.16
1418 1443 1.940613 AGGAGCAACGTTCAGTTCAAC 59.059 47.619 0.00 0.00 42.02 3.18
1419 1444 2.325583 AGGAGCAACGTTCAGTTCAA 57.674 45.000 0.00 0.00 42.02 2.69
1420 1445 1.939934 CAAGGAGCAACGTTCAGTTCA 59.060 47.619 0.00 0.00 42.02 3.18
1431 1456 4.564782 AGATCAAGATCACAAGGAGCAA 57.435 40.909 12.21 0.00 40.22 3.91
1432 1457 4.259356 CAAGATCAAGATCACAAGGAGCA 58.741 43.478 12.21 0.00 40.22 4.26
1564 1653 1.078143 GGAGTACTGGCAGGCTTGG 60.078 63.158 20.34 0.00 0.00 3.61
1601 1690 2.737252 GTTGAACGGAGTGGAGAACATC 59.263 50.000 0.00 0.00 45.00 3.06
1625 1714 3.576982 TGTTAAGAAGAGGTCGATGGTGT 59.423 43.478 0.00 0.00 0.00 4.16
1657 1750 0.322187 GAAAAGTTGGCCGGGAGCTA 60.322 55.000 2.18 0.00 43.05 3.32
1736 1876 2.203669 TTGCAGGCCATGGCAACT 60.204 55.556 36.56 23.17 44.41 3.16
1781 1921 0.321122 CTCTTGCACAGAGGTCCACC 60.321 60.000 14.53 0.00 45.10 4.61
1793 1933 2.161855 CCAATAAGGCACACTCTTGCA 58.838 47.619 0.00 0.00 44.94 4.08
1882 2022 3.333680 ACTGGTAATGGATTCCAAGGTGT 59.666 43.478 9.98 1.99 36.95 4.16
1918 2058 4.711399 TCCATCTAGTTGATCATTGCCTG 58.289 43.478 0.00 0.00 32.05 4.85
1920 2060 7.934855 ATAATCCATCTAGTTGATCATTGCC 57.065 36.000 0.00 0.00 32.05 4.52
1943 2083 6.703165 GGTTGATCTTTTGCACTTCAGAAAAT 59.297 34.615 0.00 0.00 0.00 1.82
1967 2107 2.089980 CTGAAGAGCCAAATGGTCAGG 58.910 52.381 9.00 0.00 44.10 3.86
1999 2139 1.125633 GTACTCGGGCCTTATCCCAA 58.874 55.000 0.84 0.00 46.92 4.12
2019 2159 1.971167 GTGGCATTGCGTCCCTCAA 60.971 57.895 1.91 0.00 0.00 3.02
2195 2335 4.956075 TCACTGAGCAATGATCTGTACCTA 59.044 41.667 10.51 0.00 29.74 3.08
2223 2363 7.093727 TGAGGAAGAGATAGTAGGAACAAACTG 60.094 40.741 0.00 0.00 0.00 3.16
2282 2422 6.055588 CCCTTCACGTCCATAGATAAATTGT 58.944 40.000 0.00 0.00 0.00 2.71
2283 2423 6.202954 GTCCCTTCACGTCCATAGATAAATTG 59.797 42.308 0.00 0.00 0.00 2.32
2292 2432 1.548719 CAGTGTCCCTTCACGTCCATA 59.451 52.381 0.00 0.00 42.40 2.74
2302 2442 1.202891 GGGTACTTTGCAGTGTCCCTT 60.203 52.381 14.95 0.00 41.53 3.95
2311 2451 1.599518 CAGCGGTGGGTACTTTGCA 60.600 57.895 6.74 0.00 0.00 4.08
2463 2603 2.395619 ACCTACAACGGGATAGAAGGG 58.604 52.381 0.00 0.00 0.00 3.95
2768 2908 8.454106 ACATACGTATTACTACCGATGGAATAC 58.546 37.037 5.03 0.00 32.21 1.89
2849 2996 9.890629 TGCTCTTAAATATGACTGATACAACTT 57.109 29.630 0.00 0.00 0.00 2.66
2952 3099 1.960417 GGCCTGTTTATCTGCCTCTC 58.040 55.000 0.00 0.00 40.77 3.20
3007 3159 7.286546 ACACTGACATAGTCTGATAAGCTGTAT 59.713 37.037 10.39 0.00 37.60 2.29
3016 3168 5.728637 TGTTGACACTGACATAGTCTGAT 57.271 39.130 10.39 0.00 37.60 2.90
3070 3222 5.220739 GCACATACAAGATCATCACTGGTTC 60.221 44.000 0.00 0.00 0.00 3.62
3073 3225 4.193865 TGCACATACAAGATCATCACTGG 58.806 43.478 0.00 0.00 0.00 4.00
3125 3277 4.866508 AAAACAGCCCCTAAAGTTTAGC 57.133 40.909 15.95 7.11 33.45 3.09
3150 3302 1.963338 GGCAGACACACAGGCAGAC 60.963 63.158 0.00 0.00 0.00 3.51
3360 3512 5.046950 TGAAGAGCTTCTAAGAGAGGTTTCC 60.047 44.000 11.16 0.00 40.14 3.13
3471 3623 5.784578 TTCATATGTTAGCGAGGCTTAGA 57.215 39.130 1.90 0.00 40.44 2.10
3506 3658 5.183140 AGGCTGGATGTTACAAACAACATAC 59.817 40.000 4.56 4.56 46.53 2.39
3518 3670 7.502226 CCAAGTTATCAATTAGGCTGGATGTTA 59.498 37.037 0.00 0.00 0.00 2.41
3533 3685 5.652014 GGGTGATGACAATCCAAGTTATCAA 59.348 40.000 0.00 0.00 41.62 2.57
3548 3700 4.215613 GTGTTTGGAGTTAAGGGTGATGAC 59.784 45.833 0.00 0.00 0.00 3.06
3634 3786 5.301555 TCTTTGTGATATCCGAACAACACA 58.698 37.500 6.60 0.00 33.73 3.72
3643 3795 7.985476 ACCAACTTTTATCTTTGTGATATCCG 58.015 34.615 0.00 0.00 37.48 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.