Multiple sequence alignment - TraesCS6A01G271900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G271900 chr6A 100.000 4345 0 0 1 4345 498945762 498950106 0.000000e+00 8024.0
1 TraesCS6A01G271900 chr6A 90.897 747 58 6 1 740 15762432 15763175 0.000000e+00 994.0
2 TraesCS6A01G271900 chr6A 86.949 590 63 11 2666 3249 498810482 498811063 0.000000e+00 651.0
3 TraesCS6A01G271900 chr6A 84.503 684 77 14 1946 2623 498809817 498810477 0.000000e+00 649.0
4 TraesCS6A01G271900 chr6A 81.302 722 91 22 1013 1695 498808820 498809536 2.950000e-151 545.0
5 TraesCS6A01G271900 chr6A 92.481 133 10 0 3897 4029 67409742 67409874 1.590000e-44 191.0
6 TraesCS6A01G271900 chr6A 76.316 228 32 8 2404 2631 498830176 498830381 7.690000e-18 102.0
7 TraesCS6A01G271900 chr6A 89.873 79 6 2 3474 3552 498949193 498949269 2.760000e-17 100.0
8 TraesCS6A01G271900 chr6A 89.873 79 6 2 3432 3508 498949235 498949313 2.760000e-17 100.0
9 TraesCS6A01G271900 chr6D 88.936 1907 122 40 770 2631 356229254 356231116 0.000000e+00 2270.0
10 TraesCS6A01G271900 chr6D 93.965 1077 48 11 2654 3727 356231101 356232163 0.000000e+00 1613.0
11 TraesCS6A01G271900 chr6D 86.056 251 23 5 4035 4279 356246788 356247032 4.310000e-65 259.0
12 TraesCS6A01G271900 chr6D 92.000 125 10 0 3905 4029 7657059 7657183 4.470000e-40 176.0
13 TraesCS6A01G271900 chr6D 90.625 128 12 0 3902 4029 28125238 28125111 2.080000e-38 171.0
14 TraesCS6A01G271900 chr6D 86.897 145 17 2 3899 4043 109243515 109243657 1.250000e-35 161.0
15 TraesCS6A01G271900 chr6D 91.250 80 5 2 3474 3553 356231871 356231948 1.650000e-19 108.0
16 TraesCS6A01G271900 chr6D 100.000 37 0 0 3770 3806 457677749 457677713 7.800000e-08 69.4
17 TraesCS6A01G271900 chr6D 100.000 29 0 0 3726 3754 463718501 463718473 2.000000e-03 54.7
18 TraesCS6A01G271900 chr6D 100.000 28 0 0 3726 3753 93290354 93290381 8.000000e-03 52.8
19 TraesCS6A01G271900 chr6B 93.494 1076 55 6 2654 3724 537457766 537458831 0.000000e+00 1585.0
20 TraesCS6A01G271900 chr6B 96.519 747 19 4 1889 2631 537457038 537457781 0.000000e+00 1229.0
21 TraesCS6A01G271900 chr6B 84.741 983 94 32 965 1911 537455894 537456856 0.000000e+00 933.0
22 TraesCS6A01G271900 chr6B 82.526 950 101 31 770 1695 537451463 537452371 0.000000e+00 774.0
23 TraesCS6A01G271900 chr6B 83.875 738 95 13 2652 3374 537454913 537455641 0.000000e+00 682.0
24 TraesCS6A01G271900 chr6B 84.088 685 79 15 1946 2625 537454264 537454923 6.130000e-178 634.0
25 TraesCS6A01G271900 chr6B 90.909 154 13 1 4035 4188 537461703 537461855 5.700000e-49 206.0
26 TraesCS6A01G271900 chr6B 94.488 127 7 0 3903 4029 706167394 706167520 3.430000e-46 196.0
27 TraesCS6A01G271900 chr6B 86.747 166 14 7 4183 4345 537462167 537462327 1.240000e-40 178.0
28 TraesCS6A01G271900 chr6B 94.286 70 4 0 3810 3879 537458854 537458923 1.650000e-19 108.0
29 TraesCS6A01G271900 chr6B 90.000 80 6 2 3474 3553 537458548 537458625 7.690000e-18 102.0
30 TraesCS6A01G271900 chr6B 94.444 36 2 0 3434 3469 537458634 537458669 6.070000e-04 56.5
31 TraesCS6A01G271900 chr7A 93.280 744 46 3 1 740 470893252 470892509 0.000000e+00 1094.0
32 TraesCS6A01G271900 chr7A 95.385 130 6 0 3900 4029 627236944 627236815 1.580000e-49 207.0
33 TraesCS6A01G271900 chr7A 92.537 134 10 0 3896 4029 310454798 310454931 4.430000e-45 193.0
34 TraesCS6A01G271900 chr7A 92.537 134 10 0 3896 4029 502702085 502702218 4.430000e-45 193.0
35 TraesCS6A01G271900 chr3A 92.895 746 45 6 1 740 101578483 101579226 0.000000e+00 1077.0
36 TraesCS6A01G271900 chr3A 97.638 127 3 0 3903 4029 144294935 144295061 7.320000e-53 219.0
37 TraesCS6A01G271900 chr3D 90.969 764 51 11 1 747 328511774 328511012 0.000000e+00 1013.0
38 TraesCS6A01G271900 chr3D 92.593 702 43 5 1 700 586515721 586515027 0.000000e+00 1000.0
39 TraesCS6A01G271900 chr3D 91.045 134 12 0 3903 4036 464998722 464998589 9.600000e-42 182.0
40 TraesCS6A01G271900 chr3D 100.000 40 0 0 3768 3807 59910117 59910156 1.680000e-09 75.0
41 TraesCS6A01G271900 chr4A 92.939 694 48 1 1 693 593489065 593489758 0.000000e+00 1009.0
42 TraesCS6A01G271900 chr4A 90.411 146 13 1 3885 4029 606364298 606364443 1.590000e-44 191.0
43 TraesCS6A01G271900 chr4D 90.981 754 54 6 1 740 469507330 469508083 0.000000e+00 1003.0
44 TraesCS6A01G271900 chr5D 90.885 757 53 7 1 749 544721202 544720454 0.000000e+00 1002.0
45 TraesCS6A01G271900 chr5D 86.667 60 8 0 4244 4303 467777487 467777428 2.800000e-07 67.6
46 TraesCS6A01G271900 chr7D 90.821 719 55 8 1 712 33429611 33430325 0.000000e+00 952.0
47 TraesCS6A01G271900 chr7D 92.593 54 4 0 3754 3807 406323183 406323130 1.300000e-10 78.7
48 TraesCS6A01G271900 chr7D 82.353 85 11 3 3727 3807 37961424 37961340 2.170000e-08 71.3
49 TraesCS6A01G271900 chr7D 97.368 38 1 0 3770 3807 311264193 311264156 1.010000e-06 65.8
50 TraesCS6A01G271900 chr7D 100.000 28 0 0 3780 3807 151024061 151024034 8.000000e-03 52.8
51 TraesCS6A01G271900 chr3B 86.285 751 73 17 1 743 654043406 654044134 0.000000e+00 789.0
52 TraesCS6A01G271900 chr5B 94.697 132 6 1 3899 4029 621230367 621230236 2.050000e-48 204.0
53 TraesCS6A01G271900 chr5B 90.780 141 12 1 3890 4029 82212160 82212300 2.060000e-43 187.0
54 TraesCS6A01G271900 chr5B 94.286 35 2 0 3727 3761 676549895 676549861 2.000000e-03 54.7
55 TraesCS6A01G271900 chr2A 93.284 134 9 0 3896 4029 517026922 517026789 9.530000e-47 198.0
56 TraesCS6A01G271900 chr2A 93.284 134 7 2 3896 4029 123992034 123991903 3.430000e-46 196.0
57 TraesCS6A01G271900 chr2A 92.537 134 10 0 3896 4029 73057106 73056973 4.430000e-45 193.0
58 TraesCS6A01G271900 chr1A 93.284 134 9 0 3896 4029 487800129 487799996 9.530000e-47 198.0
59 TraesCS6A01G271900 chr1A 92.366 131 10 0 3900 4030 7331785 7331915 2.060000e-43 187.0
60 TraesCS6A01G271900 chr1A 91.791 134 11 0 3896 4029 75096450 75096583 2.060000e-43 187.0
61 TraesCS6A01G271900 chr1A 92.308 130 10 0 3900 4029 544457936 544457807 7.420000e-43 185.0
62 TraesCS6A01G271900 chr1A 91.111 135 11 1 3896 4029 170109757 170109623 9.600000e-42 182.0
63 TraesCS6A01G271900 chr1A 82.353 85 11 3 3727 3807 544043302 544043386 2.170000e-08 71.3
64 TraesCS6A01G271900 chr1A 100.000 28 0 0 3727 3754 170617226 170617253 8.000000e-03 52.8
65 TraesCS6A01G271900 chr5A 94.488 127 7 0 3903 4029 426273216 426273342 3.430000e-46 196.0
66 TraesCS6A01G271900 chr5A 100.000 33 0 0 3775 3807 512230199 512230167 1.300000e-05 62.1
67 TraesCS6A01G271900 chr5A 94.286 35 2 0 3727 3761 568151106 568151072 2.000000e-03 54.7
68 TraesCS6A01G271900 chrUn 92.537 134 9 1 3897 4029 88590244 88590111 1.590000e-44 191.0
69 TraesCS6A01G271900 chrUn 91.367 139 11 1 3900 4037 30405292 30405430 5.740000e-44 189.0
70 TraesCS6A01G271900 chrUn 92.913 127 9 0 3903 4029 32052968 32053094 7.420000e-43 185.0
71 TraesCS6A01G271900 chrUn 91.603 131 11 0 3899 4029 15971420 15971550 9.600000e-42 182.0
72 TraesCS6A01G271900 chrUn 90.299 134 13 0 3896 4029 402791546 402791679 4.470000e-40 176.0
73 TraesCS6A01G271900 chrUn 91.339 127 11 0 3903 4029 41062110 41061984 1.610000e-39 174.0
74 TraesCS6A01G271900 chrUn 90.000 130 13 0 3900 4029 258883 259012 7.470000e-38 169.0
75 TraesCS6A01G271900 chrUn 90.551 127 12 0 3903 4029 31616906 31616780 7.470000e-38 169.0
76 TraesCS6A01G271900 chrUn 89.844 128 13 0 3902 4029 74690559 74690432 9.670000e-37 165.0
77 TraesCS6A01G271900 chr1D 92.969 128 8 1 3903 4030 484270584 484270458 7.420000e-43 185.0
78 TraesCS6A01G271900 chr1D 91.603 131 10 1 3899 4029 108103157 108103286 3.450000e-41 180.0
79 TraesCS6A01G271900 chr1D 92.126 127 10 0 3903 4029 256545474 256545348 3.450000e-41 180.0
80 TraesCS6A01G271900 chr1D 91.406 128 11 0 3902 4029 228800386 228800259 4.470000e-40 176.0
81 TraesCS6A01G271900 chr1D 94.444 54 3 0 3754 3807 444836215 444836268 2.780000e-12 84.2
82 TraesCS6A01G271900 chr2D 83.721 86 10 2 3726 3807 481594773 481594858 1.300000e-10 78.7
83 TraesCS6A01G271900 chr7B 80.645 93 13 4 3726 3814 580948942 580948851 2.800000e-07 67.6
84 TraesCS6A01G271900 chr7B 96.875 32 0 1 3723 3754 531154474 531154504 8.000000e-03 52.8
85 TraesCS6A01G271900 chr4B 85.455 55 4 3 3727 3777 34580983 34580929 2.000000e-03 54.7
86 TraesCS6A01G271900 chr1B 100.000 29 0 0 3726 3754 223299086 223299058 2.000000e-03 54.7
87 TraesCS6A01G271900 chr1B 100.000 28 0 0 3726 3753 561633083 561633056 8.000000e-03 52.8
88 TraesCS6A01G271900 chr1B 100.000 28 0 0 3727 3754 628033905 628033878 8.000000e-03 52.8
89 TraesCS6A01G271900 chr1B 100.000 28 0 0 3727 3754 675878799 675878772 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G271900 chr6A 498945762 498950106 4344 False 2741.333333 8024 93.248667 1 4345 3 chr6A.!!$F5 4344
1 TraesCS6A01G271900 chr6A 15762432 15763175 743 False 994.000000 994 90.897000 1 740 1 chr6A.!!$F1 739
2 TraesCS6A01G271900 chr6A 498808820 498811063 2243 False 615.000000 651 84.251333 1013 3249 3 chr6A.!!$F4 2236
3 TraesCS6A01G271900 chr6D 356229254 356232163 2909 False 1330.333333 2270 91.383667 770 3727 3 chr6D.!!$F5 2957
4 TraesCS6A01G271900 chr6B 537451463 537462327 10864 False 589.772727 1585 89.239000 770 4345 11 chr6B.!!$F2 3575
5 TraesCS6A01G271900 chr7A 470892509 470893252 743 True 1094.000000 1094 93.280000 1 740 1 chr7A.!!$R1 739
6 TraesCS6A01G271900 chr3A 101578483 101579226 743 False 1077.000000 1077 92.895000 1 740 1 chr3A.!!$F1 739
7 TraesCS6A01G271900 chr3D 328511012 328511774 762 True 1013.000000 1013 90.969000 1 747 1 chr3D.!!$R1 746
8 TraesCS6A01G271900 chr3D 586515027 586515721 694 True 1000.000000 1000 92.593000 1 700 1 chr3D.!!$R3 699
9 TraesCS6A01G271900 chr4A 593489065 593489758 693 False 1009.000000 1009 92.939000 1 693 1 chr4A.!!$F1 692
10 TraesCS6A01G271900 chr4D 469507330 469508083 753 False 1003.000000 1003 90.981000 1 740 1 chr4D.!!$F1 739
11 TraesCS6A01G271900 chr5D 544720454 544721202 748 True 1002.000000 1002 90.885000 1 749 1 chr5D.!!$R2 748
12 TraesCS6A01G271900 chr7D 33429611 33430325 714 False 952.000000 952 90.821000 1 712 1 chr7D.!!$F1 711
13 TraesCS6A01G271900 chr3B 654043406 654044134 728 False 789.000000 789 86.285000 1 743 1 chr3B.!!$F1 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 774 0.384669 GCAATGGCTGAAGATGCTCC 59.615 55.0 0.0 0.0 36.96 4.70 F
1059 1107 0.039978 AATAGACGAGATGCTCCGCG 60.040 55.0 0.0 0.0 0.00 6.46 F
1178 1234 0.108615 CTTGAATCGTCTCCCGCAGT 60.109 55.0 0.0 0.0 36.19 4.40 F
1302 5601 0.321671 CGAGAGCTTGGGGTTTCTGA 59.678 55.0 0.0 0.0 0.00 3.27 F
1594 5943 0.398318 AGTTGGAACTCTGTCAGGCC 59.602 55.0 0.0 0.0 32.86 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1588 5937 0.253044 CTTCATCCCTTTCGGCCTGA 59.747 55.000 0.0 0.0 0.00 3.86 R
2650 7328 2.694628 TGCAAAAAGAGCCACATGAAGT 59.305 40.909 0.0 0.0 0.00 3.01 R
2652 7330 3.118847 TGTTGCAAAAAGAGCCACATGAA 60.119 39.130 0.0 0.0 33.38 2.57 R
3234 7915 0.804989 CTCTGGCCGATTGGTTTCAC 59.195 55.000 0.0 0.0 37.67 3.18 R
3375 8058 0.035317 AGCAAGCACCAATCGTCTGA 59.965 50.000 0.0 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.676967 CCAAGGTGCAGGAGGCTTC 60.677 63.158 0.00 0.00 45.15 3.86
71 72 3.650950 GGTGCAGGAGGCTTCCCA 61.651 66.667 11.97 0.00 45.24 4.37
177 178 4.849813 AATGTGGGAGATCATGACTTGA 57.150 40.909 0.00 0.00 39.12 3.02
253 254 5.738619 TGACACTGAACCATACTACATGT 57.261 39.130 2.69 2.69 0.00 3.21
279 280 3.068873 GTCCTCTAGCCGAAGTTGATCAT 59.931 47.826 0.00 0.00 0.00 2.45
599 612 4.677182 GCCCATATGGACCCTTTATTCAT 58.323 43.478 24.00 0.00 37.39 2.57
605 618 7.230510 CCATATGGACCCTTTATTCATCGAAAA 59.769 37.037 17.49 0.00 37.39 2.29
634 647 0.539986 AACTGGGCCAATATCGACGT 59.460 50.000 8.04 0.00 0.00 4.34
664 689 2.589540 CTAGATGCCCAACCGCCA 59.410 61.111 0.00 0.00 0.00 5.69
731 765 2.940467 TCCTGGGGCAATGGCTGA 60.940 61.111 6.78 0.00 40.87 4.26
740 774 0.384669 GCAATGGCTGAAGATGCTCC 59.615 55.000 0.00 0.00 36.96 4.70
743 777 3.752665 CAATGGCTGAAGATGCTCCTAT 58.247 45.455 0.00 0.00 0.00 2.57
749 783 1.342496 TGAAGATGCTCCTATGCTCGG 59.658 52.381 0.00 0.00 0.00 4.63
750 784 1.342819 GAAGATGCTCCTATGCTCGGT 59.657 52.381 0.00 0.00 0.00 4.69
751 785 1.418334 AGATGCTCCTATGCTCGGTT 58.582 50.000 0.00 0.00 0.00 4.44
752 786 2.598565 AGATGCTCCTATGCTCGGTTA 58.401 47.619 0.00 0.00 0.00 2.85
753 787 2.965831 AGATGCTCCTATGCTCGGTTAA 59.034 45.455 0.00 0.00 0.00 2.01
754 788 3.388024 AGATGCTCCTATGCTCGGTTAAA 59.612 43.478 0.00 0.00 0.00 1.52
755 789 3.620427 TGCTCCTATGCTCGGTTAAAA 57.380 42.857 0.00 0.00 0.00 1.52
756 790 3.945346 TGCTCCTATGCTCGGTTAAAAA 58.055 40.909 0.00 0.00 0.00 1.94
829 865 4.437682 CCAAAGGGCATATTCTCTACCA 57.562 45.455 0.00 0.00 0.00 3.25
830 866 4.792068 CCAAAGGGCATATTCTCTACCAA 58.208 43.478 0.00 0.00 0.00 3.67
831 867 4.823989 CCAAAGGGCATATTCTCTACCAAG 59.176 45.833 0.00 0.00 0.00 3.61
832 868 5.440610 CAAAGGGCATATTCTCTACCAAGT 58.559 41.667 0.00 0.00 0.00 3.16
833 869 6.409234 CCAAAGGGCATATTCTCTACCAAGTA 60.409 42.308 0.00 0.00 0.00 2.24
834 870 5.810080 AGGGCATATTCTCTACCAAGTAC 57.190 43.478 0.00 0.00 0.00 2.73
835 871 4.593634 AGGGCATATTCTCTACCAAGTACC 59.406 45.833 0.00 0.00 0.00 3.34
836 872 4.347000 GGGCATATTCTCTACCAAGTACCA 59.653 45.833 0.00 0.00 0.00 3.25
837 873 5.163237 GGGCATATTCTCTACCAAGTACCAA 60.163 44.000 0.00 0.00 0.00 3.67
839 875 6.428159 GGCATATTCTCTACCAAGTACCAATG 59.572 42.308 0.00 0.00 0.00 2.82
851 887 5.868801 CCAAGTACCAATGCCAAATAAACAG 59.131 40.000 0.00 0.00 0.00 3.16
936 978 5.183904 CCGAAAACATCTCTCCAATCCTTTT 59.816 40.000 0.00 0.00 0.00 2.27
939 981 7.094805 CGAAAACATCTCTCCAATCCTTTTACA 60.095 37.037 0.00 0.00 0.00 2.41
991 1033 2.029666 GAGGGGCATCACGATCCG 59.970 66.667 0.00 0.00 0.00 4.18
1010 1052 4.043100 CCAAACCCGACCTCCCCC 62.043 72.222 0.00 0.00 0.00 5.40
1011 1053 4.404098 CAAACCCGACCTCCCCCG 62.404 72.222 0.00 0.00 0.00 5.73
1045 1087 3.778075 TCCCGTCAAAATCCTCCAATAGA 59.222 43.478 0.00 0.00 0.00 1.98
1059 1107 0.039978 AATAGACGAGATGCTCCGCG 60.040 55.000 0.00 0.00 0.00 6.46
1060 1108 2.465097 ATAGACGAGATGCTCCGCGC 62.465 60.000 0.00 0.00 39.77 6.86
1096 1152 4.083862 GCTCCCACCCTGTCGGTC 62.084 72.222 0.00 0.00 43.58 4.79
1178 1234 0.108615 CTTGAATCGTCTCCCGCAGT 60.109 55.000 0.00 0.00 36.19 4.40
1192 1248 2.970974 GCAGTGCAAAGACCGGCTC 61.971 63.158 11.09 0.00 0.00 4.70
1207 1263 4.214327 CTCCTCTCGCTTCCCCGC 62.214 72.222 0.00 0.00 0.00 6.13
1302 5601 0.321671 CGAGAGCTTGGGGTTTCTGA 59.678 55.000 0.00 0.00 0.00 3.27
1426 5725 3.249080 TGGTTAGTGCTCGTTTTTGCTAC 59.751 43.478 0.00 0.00 0.00 3.58
1427 5726 3.364664 GGTTAGTGCTCGTTTTTGCTACC 60.365 47.826 0.00 0.00 0.00 3.18
1429 5728 1.602377 AGTGCTCGTTTTTGCTACCAC 59.398 47.619 0.00 0.00 0.00 4.16
1433 5732 1.263217 CTCGTTTTTGCTACCACGCTT 59.737 47.619 0.00 0.00 32.59 4.68
1434 5733 1.003331 TCGTTTTTGCTACCACGCTTG 60.003 47.619 0.00 0.00 32.59 4.01
1435 5734 1.268335 CGTTTTTGCTACCACGCTTGT 60.268 47.619 0.00 0.00 0.00 3.16
1436 5735 2.793237 CGTTTTTGCTACCACGCTTGTT 60.793 45.455 0.00 0.00 0.00 2.83
1437 5736 2.766970 TTTTGCTACCACGCTTGTTC 57.233 45.000 0.00 0.00 0.00 3.18
1438 5737 1.669604 TTTGCTACCACGCTTGTTCA 58.330 45.000 0.00 0.00 0.00 3.18
1440 5739 2.753055 TGCTACCACGCTTGTTCATA 57.247 45.000 0.00 0.00 0.00 2.15
1474 5784 6.037500 TGTTGATGCTTTTCGGAATCTCATAG 59.962 38.462 0.00 0.00 0.00 2.23
1475 5785 5.059161 TGATGCTTTTCGGAATCTCATAGG 58.941 41.667 0.00 0.00 0.00 2.57
1476 5786 4.753516 TGCTTTTCGGAATCTCATAGGA 57.246 40.909 0.00 0.00 0.00 2.94
1477 5787 4.697514 TGCTTTTCGGAATCTCATAGGAG 58.302 43.478 0.00 0.00 42.80 3.69
1478 5788 4.162320 TGCTTTTCGGAATCTCATAGGAGT 59.838 41.667 4.02 0.00 42.05 3.85
1479 5789 5.362717 TGCTTTTCGGAATCTCATAGGAGTA 59.637 40.000 4.02 0.00 42.05 2.59
1504 5840 4.521075 TGCGACTTAGCATGAGCC 57.479 55.556 0.00 0.00 42.92 4.70
1522 5858 1.398390 GCCTTGCTCATTTACGGAGTG 59.602 52.381 0.00 0.00 45.73 3.51
1532 5869 6.200475 GCTCATTTACGGAGTGGTATAGTTTC 59.800 42.308 0.00 0.00 45.73 2.78
1553 5890 1.708341 AACCAGTGCTGATGCCTTTT 58.292 45.000 0.02 0.00 38.71 2.27
1572 5921 7.557358 TGCCTTTTAAATGAGCTCTGATCATTA 59.443 33.333 16.19 2.81 44.57 1.90
1573 5922 7.859875 GCCTTTTAAATGAGCTCTGATCATTAC 59.140 37.037 16.19 0.00 44.57 1.89
1588 5937 6.533730 TGATCATTACAAGTTGGAACTCTGT 58.466 36.000 1.64 10.27 38.57 3.41
1594 5943 0.398318 AGTTGGAACTCTGTCAGGCC 59.602 55.000 0.00 0.00 32.86 5.19
1634 5988 2.469826 CAAAAAGGAACTGAAACGCCC 58.530 47.619 0.00 0.00 40.86 6.13
1693 6102 8.066595 GCATTGCTTTAGTAGAGTATCATTGTG 58.933 37.037 0.16 0.00 37.82 3.33
1701 6110 6.574350 AGTAGAGTATCATTGTGGCTTGTAC 58.426 40.000 0.00 0.00 37.82 2.90
1706 6115 1.870402 TCATTGTGGCTTGTACGTGTG 59.130 47.619 0.00 0.00 0.00 3.82
1708 6117 1.292061 TTGTGGCTTGTACGTGTGTC 58.708 50.000 0.00 0.00 0.00 3.67
1709 6118 0.462375 TGTGGCTTGTACGTGTGTCT 59.538 50.000 0.00 0.00 0.00 3.41
1710 6119 1.682323 TGTGGCTTGTACGTGTGTCTA 59.318 47.619 0.00 0.00 0.00 2.59
1711 6120 2.287970 TGTGGCTTGTACGTGTGTCTAG 60.288 50.000 0.00 0.00 0.00 2.43
1722 6131 6.647481 TGTACGTGTGTCTAGTTGCAATAATT 59.353 34.615 0.59 0.00 0.00 1.40
1752 6161 6.017605 CCGAGCTCAGCTGTTTTCATATTATT 60.018 38.462 2.14 0.00 39.88 1.40
1753 6162 6.849811 CGAGCTCAGCTGTTTTCATATTATTG 59.150 38.462 2.14 0.00 39.88 1.90
1808 6269 9.688592 TTTAGTTTGTTTAGCTGTAGAGTACTC 57.311 33.333 15.41 15.41 0.00 2.59
1812 6273 7.627298 TTGTTTAGCTGTAGAGTACTCTAGG 57.373 40.000 29.00 23.90 42.31 3.02
1818 6279 6.765403 AGCTGTAGAGTACTCTAGGTATCTG 58.235 44.000 29.00 20.69 42.31 2.90
1834 6295 7.805083 AGGTATCTGATGCCTGATTTATACT 57.195 36.000 24.04 0.00 44.18 2.12
2481 7158 9.455847 GGAAACTCAATTATGAATAATGTGCTC 57.544 33.333 0.00 0.00 34.49 4.26
2501 7178 8.530311 TGTGCTCATTTTCATATTTTGTGGTAT 58.470 29.630 0.00 0.00 0.00 2.73
2604 7282 5.527951 TGTTTGTCGAATGAAAAGGAATGG 58.472 37.500 0.00 0.00 0.00 3.16
2605 7283 5.300539 TGTTTGTCGAATGAAAAGGAATGGA 59.699 36.000 0.00 0.00 0.00 3.41
2615 7293 9.129532 GAATGAAAAGGAATGGATGACTTATCT 57.870 33.333 0.00 0.00 36.03 1.98
2616 7294 8.688747 ATGAAAAGGAATGGATGACTTATCTC 57.311 34.615 0.00 0.00 36.03 2.75
2617 7295 7.632861 TGAAAAGGAATGGATGACTTATCTCA 58.367 34.615 0.00 0.00 36.03 3.27
2618 7296 8.277197 TGAAAAGGAATGGATGACTTATCTCAT 58.723 33.333 0.00 0.00 36.03 2.90
2619 7297 8.461249 AAAAGGAATGGATGACTTATCTCATG 57.539 34.615 0.00 0.00 36.03 3.07
2620 7298 6.760440 AGGAATGGATGACTTATCTCATGT 57.240 37.500 0.00 0.00 36.03 3.21
2621 7299 6.531923 AGGAATGGATGACTTATCTCATGTG 58.468 40.000 0.00 0.00 36.03 3.21
2622 7300 5.704515 GGAATGGATGACTTATCTCATGTGG 59.295 44.000 0.00 0.00 36.03 4.17
2623 7301 4.077300 TGGATGACTTATCTCATGTGGC 57.923 45.455 0.00 0.00 36.03 5.01
2624 7302 3.713248 TGGATGACTTATCTCATGTGGCT 59.287 43.478 0.00 0.00 36.03 4.75
2625 7303 4.202295 TGGATGACTTATCTCATGTGGCTC 60.202 45.833 0.00 0.00 36.03 4.70
2626 7304 4.040217 GGATGACTTATCTCATGTGGCTCT 59.960 45.833 0.00 0.00 36.03 4.09
2627 7305 5.454471 GGATGACTTATCTCATGTGGCTCTT 60.454 44.000 0.00 0.00 36.03 2.85
2628 7306 5.426689 TGACTTATCTCATGTGGCTCTTT 57.573 39.130 0.00 0.00 0.00 2.52
2629 7307 5.809001 TGACTTATCTCATGTGGCTCTTTT 58.191 37.500 0.00 0.00 0.00 2.27
2630 7308 6.240894 TGACTTATCTCATGTGGCTCTTTTT 58.759 36.000 0.00 0.00 0.00 1.94
2631 7309 6.372659 TGACTTATCTCATGTGGCTCTTTTTC 59.627 38.462 0.00 0.00 0.00 2.29
2632 7310 6.479884 ACTTATCTCATGTGGCTCTTTTTCT 58.520 36.000 0.00 0.00 0.00 2.52
2633 7311 6.944862 ACTTATCTCATGTGGCTCTTTTTCTT 59.055 34.615 0.00 0.00 0.00 2.52
2634 7312 7.449704 ACTTATCTCATGTGGCTCTTTTTCTTT 59.550 33.333 0.00 0.00 0.00 2.52
2635 7313 5.695851 TCTCATGTGGCTCTTTTTCTTTC 57.304 39.130 0.00 0.00 0.00 2.62
2636 7314 5.380043 TCTCATGTGGCTCTTTTTCTTTCT 58.620 37.500 0.00 0.00 0.00 2.52
2637 7315 5.829924 TCTCATGTGGCTCTTTTTCTTTCTT 59.170 36.000 0.00 0.00 0.00 2.52
2638 7316 6.322201 TCTCATGTGGCTCTTTTTCTTTCTTT 59.678 34.615 0.00 0.00 0.00 2.52
2639 7317 6.507023 TCATGTGGCTCTTTTTCTTTCTTTC 58.493 36.000 0.00 0.00 0.00 2.62
2640 7318 6.322201 TCATGTGGCTCTTTTTCTTTCTTTCT 59.678 34.615 0.00 0.00 0.00 2.52
2641 7319 6.530019 TGTGGCTCTTTTTCTTTCTTTCTT 57.470 33.333 0.00 0.00 0.00 2.52
2642 7320 6.935167 TGTGGCTCTTTTTCTTTCTTTCTTT 58.065 32.000 0.00 0.00 0.00 2.52
2643 7321 7.386059 TGTGGCTCTTTTTCTTTCTTTCTTTT 58.614 30.769 0.00 0.00 0.00 2.27
2644 7322 7.877612 TGTGGCTCTTTTTCTTTCTTTCTTTTT 59.122 29.630 0.00 0.00 0.00 1.94
2834 7514 6.206829 ACTCTTGGGTTACACAATCTTTAAGC 59.793 38.462 0.00 0.00 0.00 3.09
2947 7627 7.078228 CAGTCTTTAAGTTCTTTAGCGCATTT 58.922 34.615 11.47 0.00 0.00 2.32
3151 7832 4.308265 GTCCTTGGTTCAGTAGTGTTCTC 58.692 47.826 0.00 0.00 0.00 2.87
3234 7915 2.095768 CACGCAACAGGTTAATGGACAG 60.096 50.000 0.00 0.00 0.00 3.51
3251 7932 0.523072 CAGTGAAACCAATCGGCCAG 59.477 55.000 2.24 0.00 37.80 4.85
3273 7956 3.863041 AGAAGGTTTTATCCGCACTCTC 58.137 45.455 0.00 0.00 0.00 3.20
3274 7957 3.515901 AGAAGGTTTTATCCGCACTCTCT 59.484 43.478 0.00 0.00 0.00 3.10
3288 7971 1.899814 ACTCTCTGGGAATTACACGCA 59.100 47.619 0.00 0.00 0.00 5.24
3304 7987 1.669115 GCAGAAAGGAGCTCGCACA 60.669 57.895 7.83 0.00 0.00 4.57
3308 7991 0.449388 GAAAGGAGCTCGCACAATGG 59.551 55.000 7.83 0.00 0.00 3.16
3328 8011 5.092554 TGGTTCACTAAACAGAACAGACA 57.907 39.130 7.49 0.00 39.81 3.41
3378 8061 8.986477 TCATTGATCCGTGTAACATATATCAG 57.014 34.615 0.00 0.00 35.74 2.90
3381 8069 6.608610 TGATCCGTGTAACATATATCAGACG 58.391 40.000 0.00 0.00 35.74 4.18
3394 8082 0.035317 TCAGACGATTGGTGCTTGCT 59.965 50.000 0.00 0.00 0.00 3.91
3404 8092 1.068585 GTGCTTGCTTGCTTGGCTT 59.931 52.632 3.47 0.00 0.00 4.35
3419 8107 3.581024 TGGCTTGTTCATTCATGCTTC 57.419 42.857 0.00 0.00 38.17 3.86
3427 8115 7.095355 GCTTGTTCATTCATGCTTCATTTTTCT 60.095 33.333 0.00 0.00 36.18 2.52
3435 8123 3.084039 TGCTTCATTTTTCTCGGATGCT 58.916 40.909 0.00 0.00 33.22 3.79
3508 8196 5.732528 GCTGATGCAATTCTGGATGTAACAG 60.733 44.000 0.00 0.00 35.94 3.16
3509 8197 5.255687 TGATGCAATTCTGGATGTAACAGT 58.744 37.500 0.00 0.00 33.05 3.55
3512 8200 4.455533 TGCAATTCTGGATGTAACAGTGTC 59.544 41.667 0.00 0.00 37.25 3.67
3513 8201 4.455533 GCAATTCTGGATGTAACAGTGTCA 59.544 41.667 0.00 0.00 37.25 3.58
3556 8244 4.216042 TGCAATTCTGGATGTAACACAGTG 59.784 41.667 0.00 0.00 34.02 3.66
3593 8281 2.120232 CGTCGTGTGCAATAGGAGATC 58.880 52.381 0.00 0.00 0.00 2.75
3634 8322 1.540267 TGTACTGGCTCTTCACTCGTC 59.460 52.381 0.00 0.00 0.00 4.20
3646 8334 6.183360 GCTCTTCACTCGTCTTTAACAGATTC 60.183 42.308 0.00 0.00 32.60 2.52
3683 8371 1.071471 CTGGCCAAGTGTTCGTCCT 59.929 57.895 7.01 0.00 0.00 3.85
3684 8372 0.951040 CTGGCCAAGTGTTCGTCCTC 60.951 60.000 7.01 0.00 0.00 3.71
3708 8396 3.094572 ACTGCATAAGCTTTCAGCCAAT 58.905 40.909 3.20 0.00 43.77 3.16
3718 8406 3.373439 GCTTTCAGCCAATAGAGTGACTG 59.627 47.826 0.00 0.00 34.48 3.51
3727 8415 2.885135 TAGAGTGACTGGGGTTCGTA 57.115 50.000 0.00 0.00 0.00 3.43
3728 8416 1.254954 AGAGTGACTGGGGTTCGTAC 58.745 55.000 0.00 0.00 0.00 3.67
3729 8417 1.203025 AGAGTGACTGGGGTTCGTACT 60.203 52.381 0.00 0.00 0.00 2.73
3730 8418 1.201880 GAGTGACTGGGGTTCGTACTC 59.798 57.143 0.00 0.00 0.00 2.59
3732 8420 0.901580 TGACTGGGGTTCGTACTCCC 60.902 60.000 8.81 9.81 45.07 4.30
3734 8422 0.614134 ACTGGGGTTCGTACTCCCTC 60.614 60.000 8.81 2.37 45.07 4.30
3735 8423 1.305549 TGGGGTTCGTACTCCCTCC 60.306 63.158 8.81 0.00 45.07 4.30
3736 8424 2.421399 GGGGTTCGTACTCCCTCCG 61.421 68.421 0.00 0.00 39.18 4.63
3738 8426 1.253593 GGGTTCGTACTCCCTCCGTT 61.254 60.000 9.45 0.00 40.48 4.44
3739 8427 0.172127 GGTTCGTACTCCCTCCGTTC 59.828 60.000 0.00 0.00 0.00 3.95
3741 8429 1.270550 GTTCGTACTCCCTCCGTTCAA 59.729 52.381 0.00 0.00 0.00 2.69
3742 8430 1.619654 TCGTACTCCCTCCGTTCAAA 58.380 50.000 0.00 0.00 0.00 2.69
3743 8431 1.962807 TCGTACTCCCTCCGTTCAAAA 59.037 47.619 0.00 0.00 0.00 2.44
3744 8432 2.564062 TCGTACTCCCTCCGTTCAAAAT 59.436 45.455 0.00 0.00 0.00 1.82
3745 8433 3.007182 TCGTACTCCCTCCGTTCAAAATT 59.993 43.478 0.00 0.00 0.00 1.82
3746 8434 4.220382 TCGTACTCCCTCCGTTCAAAATTA 59.780 41.667 0.00 0.00 0.00 1.40
3747 8435 4.328169 CGTACTCCCTCCGTTCAAAATTAC 59.672 45.833 0.00 0.00 0.00 1.89
3748 8436 4.635699 ACTCCCTCCGTTCAAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
3749 8437 4.981812 ACTCCCTCCGTTCAAAATTACTT 58.018 39.130 0.00 0.00 0.00 2.24
3750 8438 4.760204 ACTCCCTCCGTTCAAAATTACTTG 59.240 41.667 0.00 0.00 0.00 3.16
3751 8439 4.721132 TCCCTCCGTTCAAAATTACTTGT 58.279 39.130 0.00 0.00 0.00 3.16
3752 8440 4.758165 TCCCTCCGTTCAAAATTACTTGTC 59.242 41.667 0.00 0.00 0.00 3.18
3753 8441 4.378046 CCCTCCGTTCAAAATTACTTGTCG 60.378 45.833 0.00 0.00 0.00 4.35
3754 8442 4.212636 CCTCCGTTCAAAATTACTTGTCGT 59.787 41.667 8.26 0.00 0.00 4.34
3755 8443 5.277634 CCTCCGTTCAAAATTACTTGTCGTT 60.278 40.000 8.26 0.00 0.00 3.85
3756 8444 5.740406 TCCGTTCAAAATTACTTGTCGTTC 58.260 37.500 8.26 0.00 0.00 3.95
3757 8445 5.293814 TCCGTTCAAAATTACTTGTCGTTCA 59.706 36.000 8.26 0.00 0.00 3.18
3758 8446 5.966503 CCGTTCAAAATTACTTGTCGTTCAA 59.033 36.000 8.26 0.00 34.61 2.69
3759 8447 6.469595 CCGTTCAAAATTACTTGTCGTTCAAA 59.530 34.615 8.26 0.00 35.48 2.69
3760 8448 7.166804 CCGTTCAAAATTACTTGTCGTTCAAAT 59.833 33.333 8.26 0.00 35.48 2.32
3761 8449 8.528295 CGTTCAAAATTACTTGTCGTTCAAATT 58.472 29.630 0.00 0.00 35.48 1.82
3764 8452 9.574458 TCAAAATTACTTGTCGTTCAAATTTGA 57.426 25.926 16.91 16.91 35.48 2.69
3781 8469 9.291664 TCAAATTTGAACTAAACTAAAACCACG 57.708 29.630 18.45 0.00 33.55 4.94
3782 8470 9.291664 CAAATTTGAACTAAACTAAAACCACGA 57.708 29.630 13.08 0.00 0.00 4.35
3783 8471 8.845942 AATTTGAACTAAACTAAAACCACGAC 57.154 30.769 0.00 0.00 0.00 4.34
3784 8472 5.640218 TGAACTAAACTAAAACCACGACG 57.360 39.130 0.00 0.00 0.00 5.12
3785 8473 5.347342 TGAACTAAACTAAAACCACGACGA 58.653 37.500 0.00 0.00 0.00 4.20
3786 8474 5.459762 TGAACTAAACTAAAACCACGACGAG 59.540 40.000 0.00 0.00 0.00 4.18
3787 8475 4.936891 ACTAAACTAAAACCACGACGAGT 58.063 39.130 0.00 0.00 0.00 4.18
3788 8476 6.072112 ACTAAACTAAAACCACGACGAGTA 57.928 37.500 0.00 0.00 0.00 2.59
3789 8477 6.503524 ACTAAACTAAAACCACGACGAGTAA 58.496 36.000 0.00 0.00 0.00 2.24
3790 8478 7.147976 ACTAAACTAAAACCACGACGAGTAAT 58.852 34.615 0.00 0.00 0.00 1.89
3791 8479 6.849588 AAACTAAAACCACGACGAGTAATT 57.150 33.333 0.00 1.08 0.00 1.40
3792 8480 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
3793 8481 7.945033 AACTAAAACCACGACGAGTAATTTA 57.055 32.000 0.00 1.47 0.00 1.40
3794 8482 7.945033 ACTAAAACCACGACGAGTAATTTAA 57.055 32.000 0.00 0.00 0.00 1.52
3795 8483 8.364129 ACTAAAACCACGACGAGTAATTTAAA 57.636 30.769 0.00 0.00 0.00 1.52
3796 8484 8.825745 ACTAAAACCACGACGAGTAATTTAAAA 58.174 29.630 0.00 0.00 0.00 1.52
3797 8485 7.897153 AAAACCACGACGAGTAATTTAAAAC 57.103 32.000 0.00 0.00 0.00 2.43
3798 8486 5.254669 ACCACGACGAGTAATTTAAAACG 57.745 39.130 0.00 0.00 0.00 3.60
3799 8487 4.150451 ACCACGACGAGTAATTTAAAACGG 59.850 41.667 0.00 0.00 0.00 4.44
3800 8488 4.385447 CCACGACGAGTAATTTAAAACGGA 59.615 41.667 0.00 0.00 0.00 4.69
3801 8489 5.443693 CCACGACGAGTAATTTAAAACGGAG 60.444 44.000 0.00 0.00 0.00 4.63
3802 8490 4.622740 ACGACGAGTAATTTAAAACGGAGG 59.377 41.667 0.00 0.00 0.00 4.30
3803 8491 4.032104 CGACGAGTAATTTAAAACGGAGGG 59.968 45.833 0.00 0.00 0.00 4.30
3804 8492 5.151297 ACGAGTAATTTAAAACGGAGGGA 57.849 39.130 0.00 0.00 0.00 4.20
3805 8493 5.173664 ACGAGTAATTTAAAACGGAGGGAG 58.826 41.667 0.00 0.00 0.00 4.30
3806 8494 5.173664 CGAGTAATTTAAAACGGAGGGAGT 58.826 41.667 0.00 0.00 0.00 3.85
3807 8495 5.063060 CGAGTAATTTAAAACGGAGGGAGTG 59.937 44.000 0.00 0.00 0.00 3.51
3808 8496 6.117975 AGTAATTTAAAACGGAGGGAGTGA 57.882 37.500 0.00 0.00 0.00 3.41
3864 8552 0.253610 TAAACCGATCCGCCCACAAT 59.746 50.000 0.00 0.00 0.00 2.71
3873 8561 4.454161 CGATCCGCCCACAATGATAAAATA 59.546 41.667 0.00 0.00 0.00 1.40
3879 8567 7.174253 TCCGCCCACAATGATAAAATAAGATAC 59.826 37.037 0.00 0.00 0.00 2.24
3881 8569 7.307751 CGCCCACAATGATAAAATAAGATACGT 60.308 37.037 0.00 0.00 0.00 3.57
3882 8570 8.995220 GCCCACAATGATAAAATAAGATACGTA 58.005 33.333 0.00 0.00 0.00 3.57
3893 8581 7.757941 AAATAAGATACGTACTACTCCCTCC 57.242 40.000 0.00 0.00 0.00 4.30
3894 8582 3.399440 AGATACGTACTACTCCCTCCG 57.601 52.381 0.00 0.00 0.00 4.63
3895 8583 2.703007 AGATACGTACTACTCCCTCCGT 59.297 50.000 0.00 0.00 0.00 4.69
3897 8585 4.345257 AGATACGTACTACTCCCTCCGTAA 59.655 45.833 0.00 0.00 34.88 3.18
3900 8588 4.273318 ACGTACTACTCCCTCCGTAAAAT 58.727 43.478 0.00 0.00 0.00 1.82
3901 8589 5.437060 ACGTACTACTCCCTCCGTAAAATA 58.563 41.667 0.00 0.00 0.00 1.40
3902 8590 6.064717 ACGTACTACTCCCTCCGTAAAATAT 58.935 40.000 0.00 0.00 0.00 1.28
3903 8591 7.224297 ACGTACTACTCCCTCCGTAAAATATA 58.776 38.462 0.00 0.00 0.00 0.86
3904 8592 7.173390 ACGTACTACTCCCTCCGTAAAATATAC 59.827 40.741 0.00 0.00 0.00 1.47
3905 8593 7.389053 CGTACTACTCCCTCCGTAAAATATACT 59.611 40.741 0.00 0.00 0.00 2.12
3907 8595 6.718912 ACTACTCCCTCCGTAAAATATACTCC 59.281 42.308 0.00 0.00 0.00 3.85
3908 8596 4.837298 ACTCCCTCCGTAAAATATACTCCC 59.163 45.833 0.00 0.00 0.00 4.30
3910 8598 5.082425 TCCCTCCGTAAAATATACTCCCTC 58.918 45.833 0.00 0.00 0.00 4.30
3911 8599 4.222366 CCCTCCGTAAAATATACTCCCTCC 59.778 50.000 0.00 0.00 0.00 4.30
3912 8600 4.082354 CCTCCGTAAAATATACTCCCTCCG 60.082 50.000 0.00 0.00 0.00 4.63
3913 8601 4.473444 TCCGTAAAATATACTCCCTCCGT 58.527 43.478 0.00 0.00 0.00 4.69
3914 8602 4.895297 TCCGTAAAATATACTCCCTCCGTT 59.105 41.667 0.00 0.00 0.00 4.44
3916 8604 5.225642 CGTAAAATATACTCCCTCCGTTCC 58.774 45.833 0.00 0.00 0.00 3.62
3917 8605 4.332428 AAAATATACTCCCTCCGTTCCG 57.668 45.455 0.00 0.00 0.00 4.30
3918 8606 2.965671 ATATACTCCCTCCGTTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
3919 8607 2.734755 TATACTCCCTCCGTTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
3920 8608 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
3921 8609 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
3922 8610 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3923 8611 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3925 8613 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3926 8614 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3928 8616 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3929 8617 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
3930 8618 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
3931 8619 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
3932 8620 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
3934 8622 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
3935 8623 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
3936 8624 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
3937 8625 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
3938 8626 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
3939 8627 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
3941 8629 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
3948 8636 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
3949 8637 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3952 8640 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
4000 8688 8.647796 AGATACATCCGTATTTAGACAAATCCA 58.352 33.333 0.00 0.00 38.48 3.41
4001 8689 9.268268 GATACATCCGTATTTAGACAAATCCAA 57.732 33.333 0.00 0.00 38.48 3.53
4002 8690 9.793259 ATACATCCGTATTTAGACAAATCCAAT 57.207 29.630 0.00 0.00 34.53 3.16
4004 8692 9.052759 ACATCCGTATTTAGACAAATCCAATAC 57.947 33.333 0.00 0.00 35.88 1.89
4005 8693 9.051679 CATCCGTATTTAGACAAATCCAATACA 57.948 33.333 0.00 0.00 34.19 2.29
4007 8695 8.885722 TCCGTATTTAGACAAATCCAATACAAC 58.114 33.333 0.00 0.00 34.19 3.32
4008 8696 8.889717 CCGTATTTAGACAAATCCAATACAACT 58.110 33.333 0.00 0.00 34.19 3.16
4023 8711 9.667107 TCCAATACAACTAATTTAGAACAGAGG 57.333 33.333 10.39 4.40 0.00 3.69
4024 8712 8.893727 CCAATACAACTAATTTAGAACAGAGGG 58.106 37.037 10.39 1.37 0.00 4.30
4027 8715 7.317722 ACAACTAATTTAGAACAGAGGGAGT 57.682 36.000 10.39 0.00 0.00 3.85
4028 8716 8.431910 ACAACTAATTTAGAACAGAGGGAGTA 57.568 34.615 10.39 0.00 0.00 2.59
4029 8717 8.877195 ACAACTAATTTAGAACAGAGGGAGTAA 58.123 33.333 10.39 0.00 0.00 2.24
4030 8718 9.372369 CAACTAATTTAGAACAGAGGGAGTAAG 57.628 37.037 10.39 0.00 0.00 2.34
4031 8719 8.896722 ACTAATTTAGAACAGAGGGAGTAAGA 57.103 34.615 10.39 0.00 0.00 2.10
4032 8720 8.973182 ACTAATTTAGAACAGAGGGAGTAAGAG 58.027 37.037 10.39 0.00 0.00 2.85
4033 8721 5.662674 TTTAGAACAGAGGGAGTAAGAGC 57.337 43.478 0.00 0.00 0.00 4.09
4041 11353 4.404073 CAGAGGGAGTAAGAGCTACAATGT 59.596 45.833 0.00 0.00 32.37 2.71
4053 11365 4.573900 AGCTACAATGTTTCTGAGAGTGG 58.426 43.478 0.00 0.00 0.00 4.00
4058 11370 4.202050 ACAATGTTTCTGAGAGTGGCAAAC 60.202 41.667 0.00 0.00 0.00 2.93
4111 11423 2.040178 GGTACTACCATGTCCTGAGGG 58.960 57.143 0.00 0.00 38.42 4.30
4113 11425 3.373438 GGTACTACCATGTCCTGAGGGTA 60.373 52.174 0.00 0.00 38.42 3.69
4131 11443 3.991367 GGTACCAAATCTAGGGTCATCG 58.009 50.000 7.15 0.00 38.60 3.84
4133 11445 3.821421 ACCAAATCTAGGGTCATCGAC 57.179 47.619 0.00 0.00 29.34 4.20
4146 11458 3.493503 GGTCATCGACGTTTCTGAAACTT 59.506 43.478 25.64 19.20 39.23 2.66
4147 11459 4.025145 GGTCATCGACGTTTCTGAAACTTT 60.025 41.667 25.64 15.35 39.23 2.66
4152 11464 3.303132 CGACGTTTCTGAAACTTTGGAGG 60.303 47.826 25.64 13.76 39.23 4.30
4201 11513 4.660938 GCCCACGGGGTTGCTCTT 62.661 66.667 1.28 0.00 46.51 2.85
4202 11514 2.115266 CCCACGGGGTTGCTCTTT 59.885 61.111 1.28 0.00 38.25 2.52
4204 11516 1.112916 CCCACGGGGTTGCTCTTTTT 61.113 55.000 1.28 0.00 38.25 1.94
4205 11517 0.313987 CCACGGGGTTGCTCTTTTTC 59.686 55.000 0.00 0.00 0.00 2.29
4206 11518 1.028905 CACGGGGTTGCTCTTTTTCA 58.971 50.000 0.00 0.00 0.00 2.69
4207 11519 1.407258 CACGGGGTTGCTCTTTTTCAA 59.593 47.619 0.00 0.00 0.00 2.69
4208 11520 2.035832 CACGGGGTTGCTCTTTTTCAAT 59.964 45.455 0.00 0.00 0.00 2.57
4209 11521 3.254657 CACGGGGTTGCTCTTTTTCAATA 59.745 43.478 0.00 0.00 0.00 1.90
4211 11523 4.342665 ACGGGGTTGCTCTTTTTCAATAAA 59.657 37.500 0.00 0.00 0.00 1.40
4212 11524 4.923281 CGGGGTTGCTCTTTTTCAATAAAG 59.077 41.667 0.00 0.00 36.64 1.85
4213 11525 5.278758 CGGGGTTGCTCTTTTTCAATAAAGA 60.279 40.000 0.00 0.00 40.76 2.52
4214 11526 5.926542 GGGGTTGCTCTTTTTCAATAAAGAC 59.073 40.000 0.00 0.00 38.78 3.01
4322 11949 2.564771 TCTTCCTCTAATTGCATGCCG 58.435 47.619 16.68 0.00 0.00 5.69
4323 11950 2.092968 TCTTCCTCTAATTGCATGCCGT 60.093 45.455 16.68 0.00 0.00 5.68
4325 11952 0.947244 CCTCTAATTGCATGCCGTCC 59.053 55.000 16.68 0.00 0.00 4.79
4327 11954 1.331756 CTCTAATTGCATGCCGTCCAC 59.668 52.381 16.68 0.00 0.00 4.02
4328 11955 1.065491 TCTAATTGCATGCCGTCCACT 60.065 47.619 16.68 0.00 0.00 4.00
4337 11964 4.102649 GCATGCCGTCCACTAAAAATTAC 58.897 43.478 6.36 0.00 0.00 1.89
4341 11968 5.521544 TGCCGTCCACTAAAAATTACAAAC 58.478 37.500 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.238439 CTCCTGGCACAACGTTTGAT 58.762 50.000 0.00 0.00 38.70 2.57
68 69 1.227089 CGCTCGACATCCTTCTGGG 60.227 63.158 0.00 0.00 0.00 4.45
71 72 3.082579 GCCCGCTCGACATCCTTCT 62.083 63.158 0.00 0.00 0.00 2.85
177 178 3.822167 TCATGTTGTGCAAGATGACACAT 59.178 39.130 17.21 0.35 45.59 3.21
253 254 0.924823 ACTTCGGCTAGAGGACCCTA 59.075 55.000 0.00 0.00 0.00 3.53
279 280 2.662596 CAGGTTGCCGGTAGCTGA 59.337 61.111 24.57 0.00 42.25 4.26
599 612 2.224161 CCAGTTTTTGGCCCATTTTCGA 60.224 45.455 0.00 0.00 40.87 3.71
605 618 3.482383 GCCCAGTTTTTGGCCCAT 58.518 55.556 0.00 0.00 46.32 4.00
634 647 3.733507 ATCTAGCCGTCGCCCCAGA 62.734 63.158 0.00 0.00 34.57 3.86
664 689 4.438346 GATACAATCGGCGCTGGT 57.562 55.556 17.88 6.16 0.00 4.00
731 765 1.418334 ACCGAGCATAGGAGCATCTT 58.582 50.000 0.00 0.00 33.72 2.40
753 787 7.363526 GCCATTTGCAGAAACACGTGTTTTT 62.364 40.000 38.63 32.58 43.16 1.94
754 788 5.961775 GCCATTTGCAGAAACACGTGTTTT 61.962 41.667 38.63 27.21 43.16 2.43
755 789 4.526331 GCCATTTGCAGAAACACGTGTTT 61.526 43.478 39.02 39.02 44.56 2.83
756 790 2.808244 CCATTTGCAGAAACACGTGTT 58.192 42.857 27.70 27.70 40.50 3.32
757 791 1.535860 GCCATTTGCAGAAACACGTGT 60.536 47.619 17.22 17.22 40.77 4.49
758 792 1.130955 GCCATTTGCAGAAACACGTG 58.869 50.000 15.48 15.48 40.77 4.49
759 793 0.031994 GGCCATTTGCAGAAACACGT 59.968 50.000 0.00 0.00 43.89 4.49
760 794 0.031857 TGGCCATTTGCAGAAACACG 59.968 50.000 0.00 0.00 43.89 4.49
761 795 1.202510 TGTGGCCATTTGCAGAAACAC 60.203 47.619 9.72 0.00 43.89 3.32
762 796 1.117994 TGTGGCCATTTGCAGAAACA 58.882 45.000 9.72 0.00 43.89 2.83
763 797 2.237393 TTGTGGCCATTTGCAGAAAC 57.763 45.000 9.72 0.00 43.89 2.78
764 798 2.996249 TTTGTGGCCATTTGCAGAAA 57.004 40.000 9.72 0.00 43.89 2.52
765 799 2.170187 ACTTTTGTGGCCATTTGCAGAA 59.830 40.909 9.72 2.49 43.89 3.02
766 800 1.761784 ACTTTTGTGGCCATTTGCAGA 59.238 42.857 9.72 0.00 43.89 4.26
767 801 2.137523 GACTTTTGTGGCCATTTGCAG 58.862 47.619 9.72 4.43 43.89 4.41
768 802 1.202627 GGACTTTTGTGGCCATTTGCA 60.203 47.619 9.72 0.00 43.89 4.08
825 861 6.493802 TGTTTATTTGGCATTGGTACTTGGTA 59.506 34.615 0.00 0.00 0.00 3.25
826 862 5.305644 TGTTTATTTGGCATTGGTACTTGGT 59.694 36.000 0.00 0.00 0.00 3.67
827 863 5.788450 TGTTTATTTGGCATTGGTACTTGG 58.212 37.500 0.00 0.00 0.00 3.61
828 864 5.868801 CCTGTTTATTTGGCATTGGTACTTG 59.131 40.000 0.00 0.00 0.00 3.16
829 865 5.568624 GCCTGTTTATTTGGCATTGGTACTT 60.569 40.000 0.00 0.00 45.46 2.24
830 866 4.081697 GCCTGTTTATTTGGCATTGGTACT 60.082 41.667 0.00 0.00 45.46 2.73
831 867 4.180817 GCCTGTTTATTTGGCATTGGTAC 58.819 43.478 0.00 0.00 45.46 3.34
832 868 4.464069 GCCTGTTTATTTGGCATTGGTA 57.536 40.909 0.00 0.00 45.46 3.25
833 869 3.333029 GCCTGTTTATTTGGCATTGGT 57.667 42.857 0.00 0.00 45.46 3.67
839 875 4.176271 GAGTCAATGCCTGTTTATTTGGC 58.824 43.478 0.00 0.00 46.26 4.52
851 887 4.456911 TCAAGACAGATTTGAGTCAATGCC 59.543 41.667 6.36 0.00 37.23 4.40
936 978 3.117663 GGTGGGATTAGGAAATGGCTGTA 60.118 47.826 0.00 0.00 0.00 2.74
939 981 1.929494 TGGTGGGATTAGGAAATGGCT 59.071 47.619 0.00 0.00 0.00 4.75
991 1033 2.350134 GGGAGGTCGGGTTTGGAC 59.650 66.667 0.00 0.00 0.00 4.02
1093 1149 4.500116 GCTCTGCGGACCGAGACC 62.500 72.222 20.50 5.56 0.00 3.85
1094 1150 4.500116 GGCTCTGCGGACCGAGAC 62.500 72.222 20.50 4.27 0.00 3.36
1096 1152 3.842923 ATGGCTCTGCGGACCGAG 61.843 66.667 20.50 12.32 0.00 4.63
1178 1234 2.172483 GAGAGGAGCCGGTCTTTGCA 62.172 60.000 1.90 0.00 0.00 4.08
1252 5551 4.227134 CCGACCCAGGCCATCTCG 62.227 72.222 5.01 5.28 0.00 4.04
1275 5574 3.764466 CAAGCTCTCGGGGCGACT 61.764 66.667 0.00 0.00 34.52 4.18
1285 5584 0.035458 CGTCAGAAACCCCAAGCTCT 59.965 55.000 0.00 0.00 0.00 4.09
1290 5589 1.770927 TCCCCGTCAGAAACCCCAA 60.771 57.895 0.00 0.00 0.00 4.12
1402 5701 2.979813 GCAAAAACGAGCACTAACCATG 59.020 45.455 0.00 0.00 0.00 3.66
1426 5725 1.472082 TGCCAATATGAACAAGCGTGG 59.528 47.619 4.26 0.00 0.00 4.94
1427 5726 2.917701 TGCCAATATGAACAAGCGTG 57.082 45.000 0.00 0.00 0.00 5.34
1429 5728 5.112220 ACATATGCCAATATGAACAAGCG 57.888 39.130 11.64 0.00 45.91 4.68
1433 5732 6.448852 GCATCAACATATGCCAATATGAACA 58.551 36.000 11.64 0.00 45.91 3.18
1434 5733 6.939551 GCATCAACATATGCCAATATGAAC 57.060 37.500 11.64 0.00 45.91 3.18
1477 5787 7.043722 GCTCATGCTAAGTCGCAAGATATATAC 60.044 40.741 0.00 0.00 44.06 1.47
1478 5788 6.975197 GCTCATGCTAAGTCGCAAGATATATA 59.025 38.462 0.00 0.00 44.06 0.86
1479 5789 5.809562 GCTCATGCTAAGTCGCAAGATATAT 59.190 40.000 0.00 0.00 44.06 0.86
1483 5819 2.208431 GCTCATGCTAAGTCGCAAGAT 58.792 47.619 0.00 0.00 44.06 2.40
1488 5824 0.654683 CAAGGCTCATGCTAAGTCGC 59.345 55.000 0.00 0.00 39.59 5.19
1504 5840 2.699954 ACCACTCCGTAAATGAGCAAG 58.300 47.619 0.00 0.00 32.98 4.01
1510 5846 9.028185 GTTAGAAACTATACCACTCCGTAAATG 57.972 37.037 0.00 0.00 0.00 2.32
1512 5848 7.178274 TGGTTAGAAACTATACCACTCCGTAAA 59.822 37.037 0.00 0.00 35.82 2.01
1522 5858 5.974108 TCAGCACTGGTTAGAAACTATACC 58.026 41.667 0.00 0.00 0.00 2.73
1532 5869 2.119801 AAGGCATCAGCACTGGTTAG 57.880 50.000 0.00 0.00 44.61 2.34
1553 5890 8.886719 CAACTTGTAATGATCAGAGCTCATTTA 58.113 33.333 17.77 0.00 42.03 1.40
1572 5921 2.746472 GCCTGACAGAGTTCCAACTTGT 60.746 50.000 3.32 1.04 39.88 3.16
1573 5922 1.876156 GCCTGACAGAGTTCCAACTTG 59.124 52.381 3.32 0.00 39.88 3.16
1588 5937 0.253044 CTTCATCCCTTTCGGCCTGA 59.747 55.000 0.00 0.00 0.00 3.86
1594 5943 3.343617 TGGTAAAGCTTCATCCCTTTCG 58.656 45.455 0.00 0.00 33.64 3.46
1613 5967 2.469826 GGCGTTTCAGTTCCTTTTTGG 58.530 47.619 0.00 0.00 37.10 3.28
1634 5988 5.525012 TGCAGAGACCAAATCAGAATATTCG 59.475 40.000 9.78 5.54 0.00 3.34
1693 6102 2.719426 ACTAGACACACGTACAAGCC 57.281 50.000 0.00 0.00 0.00 4.35
1701 6110 6.303022 CACAAATTATTGCAACTAGACACACG 59.697 38.462 0.00 0.00 40.34 4.49
1706 6115 4.793216 CGGCACAAATTATTGCAACTAGAC 59.207 41.667 0.00 0.00 40.75 2.59
1708 6117 4.980590 TCGGCACAAATTATTGCAACTAG 58.019 39.130 0.00 0.00 40.75 2.57
1709 6118 4.674101 GCTCGGCACAAATTATTGCAACTA 60.674 41.667 0.00 0.00 40.75 2.24
1710 6119 3.836949 CTCGGCACAAATTATTGCAACT 58.163 40.909 0.00 0.00 40.75 3.16
1711 6120 2.345341 GCTCGGCACAAATTATTGCAAC 59.655 45.455 0.00 0.00 40.75 4.17
1806 6267 5.999205 AATCAGGCATCAGATACCTAGAG 57.001 43.478 1.38 0.00 30.84 2.43
1807 6268 8.972127 GTATAAATCAGGCATCAGATACCTAGA 58.028 37.037 1.38 3.57 30.84 2.43
1808 6269 8.976353 AGTATAAATCAGGCATCAGATACCTAG 58.024 37.037 1.38 0.00 30.84 3.02
1812 6273 9.579768 CAGTAGTATAAATCAGGCATCAGATAC 57.420 37.037 0.00 0.00 0.00 2.24
1818 6279 9.579768 CAGATACAGTAGTATAAATCAGGCATC 57.420 37.037 0.00 0.00 40.95 3.91
1893 6360 8.902806 TCAACCATATTGTTTAATCACATCTCC 58.097 33.333 0.00 0.00 0.00 3.71
1950 6621 2.729360 TCTCGAACATAAACAGCACACG 59.271 45.455 0.00 0.00 0.00 4.49
2390 7066 7.535489 AACTGAGGAAAACGTATAGTTATGC 57.465 36.000 0.00 0.00 43.37 3.14
2604 7282 5.212532 AGAGCCACATGAGATAAGTCATC 57.787 43.478 0.00 0.00 34.81 2.92
2605 7283 5.627182 AAGAGCCACATGAGATAAGTCAT 57.373 39.130 0.00 0.00 37.68 3.06
2615 7293 6.322201 AGAAAGAAAGAAAAAGAGCCACATGA 59.678 34.615 0.00 0.00 0.00 3.07
2616 7294 6.510536 AGAAAGAAAGAAAAAGAGCCACATG 58.489 36.000 0.00 0.00 0.00 3.21
2617 7295 6.721704 AGAAAGAAAGAAAAAGAGCCACAT 57.278 33.333 0.00 0.00 0.00 3.21
2618 7296 6.530019 AAGAAAGAAAGAAAAAGAGCCACA 57.470 33.333 0.00 0.00 0.00 4.17
2619 7297 7.834068 AAAAGAAAGAAAGAAAAAGAGCCAC 57.166 32.000 0.00 0.00 0.00 5.01
2641 7319 4.402155 AGAGCCACATGAAGTTCACAAAAA 59.598 37.500 7.96 0.00 0.00 1.94
2642 7320 3.953612 AGAGCCACATGAAGTTCACAAAA 59.046 39.130 7.96 0.00 0.00 2.44
2643 7321 3.554934 AGAGCCACATGAAGTTCACAAA 58.445 40.909 7.96 0.00 0.00 2.83
2644 7322 3.213206 AGAGCCACATGAAGTTCACAA 57.787 42.857 7.96 0.00 0.00 3.33
2645 7323 2.936919 AGAGCCACATGAAGTTCACA 57.063 45.000 7.96 0.00 0.00 3.58
2646 7324 4.574599 AAAAGAGCCACATGAAGTTCAC 57.425 40.909 7.96 0.00 0.00 3.18
2647 7325 4.737352 GCAAAAAGAGCCACATGAAGTTCA 60.737 41.667 8.27 8.27 0.00 3.18
2648 7326 3.737774 GCAAAAAGAGCCACATGAAGTTC 59.262 43.478 0.00 0.00 0.00 3.01
2649 7327 3.132646 TGCAAAAAGAGCCACATGAAGTT 59.867 39.130 0.00 0.00 0.00 2.66
2650 7328 2.694628 TGCAAAAAGAGCCACATGAAGT 59.305 40.909 0.00 0.00 0.00 3.01
2651 7329 3.374220 TGCAAAAAGAGCCACATGAAG 57.626 42.857 0.00 0.00 0.00 3.02
2652 7330 3.118847 TGTTGCAAAAAGAGCCACATGAA 60.119 39.130 0.00 0.00 33.38 2.57
2834 7514 9.683069 AGGAATTGATTATAATGCGCTAAAAAG 57.317 29.630 9.73 0.00 0.00 2.27
2947 7627 5.127491 CGCACATAAGGGGGTTAAGATTAA 58.873 41.667 0.00 0.00 0.00 1.40
3151 7832 3.278367 TGTAGACGACGAAGGAAACAG 57.722 47.619 0.00 0.00 0.00 3.16
3206 7887 4.459390 TTAACCTGTTGCGTGCTATCTA 57.541 40.909 0.00 0.00 0.00 1.98
3234 7915 0.804989 CTCTGGCCGATTGGTTTCAC 59.195 55.000 0.00 0.00 37.67 3.18
3251 7932 3.863041 AGAGTGCGGATAAAACCTTCTC 58.137 45.455 0.00 0.00 0.00 2.87
3273 7956 2.420022 CCTTTCTGCGTGTAATTCCCAG 59.580 50.000 0.00 0.00 0.00 4.45
3274 7957 2.039216 TCCTTTCTGCGTGTAATTCCCA 59.961 45.455 0.00 0.00 0.00 4.37
3288 7971 1.446907 CATTGTGCGAGCTCCTTTCT 58.553 50.000 8.47 0.00 0.00 2.52
3304 7987 6.119536 TGTCTGTTCTGTTTAGTGAACCATT 58.880 36.000 0.00 0.00 41.10 3.16
3308 7991 4.570772 TGCTGTCTGTTCTGTTTAGTGAAC 59.429 41.667 0.00 0.00 41.87 3.18
3360 8043 6.812879 ATCGTCTGATATATGTTACACGGA 57.187 37.500 0.00 0.00 31.44 4.69
3375 8058 0.035317 AGCAAGCACCAATCGTCTGA 59.965 50.000 0.00 0.00 0.00 3.27
3376 8059 0.877071 AAGCAAGCACCAATCGTCTG 59.123 50.000 0.00 0.00 0.00 3.51
3377 8060 0.877071 CAAGCAAGCACCAATCGTCT 59.123 50.000 0.00 0.00 0.00 4.18
3378 8061 0.730494 GCAAGCAAGCACCAATCGTC 60.730 55.000 0.00 0.00 0.00 4.20
3381 8069 1.425412 CAAGCAAGCAAGCACCAATC 58.575 50.000 3.19 0.00 36.85 2.67
3394 8082 3.655486 CATGAATGAACAAGCCAAGCAA 58.345 40.909 0.00 0.00 0.00 3.91
3404 8092 6.583427 CGAGAAAAATGAAGCATGAATGAACA 59.417 34.615 0.00 0.00 0.00 3.18
3419 8107 4.424061 TCAACAGCATCCGAGAAAAATG 57.576 40.909 0.00 0.00 0.00 2.32
3427 8115 0.249955 TCAGCATCAACAGCATCCGA 59.750 50.000 0.00 0.00 0.00 4.55
3493 8181 9.716531 CATATATGACACTGTTACATCCAGAAT 57.283 33.333 6.92 0.00 34.04 2.40
3556 8244 5.687730 ACACGACGATGATACTGAATGATTC 59.312 40.000 0.00 0.00 0.00 2.52
3614 8302 1.540267 GACGAGTGAAGAGCCAGTACA 59.460 52.381 0.00 0.00 0.00 2.90
3679 8367 2.977772 AGCTTATGCAGTCTGAGGAC 57.022 50.000 3.32 0.00 42.74 3.85
3708 8396 2.040813 AGTACGAACCCCAGTCACTCTA 59.959 50.000 0.00 0.00 0.00 2.43
3718 8406 2.421399 CGGAGGGAGTACGAACCCC 61.421 68.421 17.72 12.76 46.64 4.95
3727 8415 4.635699 AGTAATTTTGAACGGAGGGAGT 57.364 40.909 0.00 0.00 0.00 3.85
3728 8416 4.760204 ACAAGTAATTTTGAACGGAGGGAG 59.240 41.667 0.00 0.00 0.00 4.30
3729 8417 4.721132 ACAAGTAATTTTGAACGGAGGGA 58.279 39.130 0.00 0.00 0.00 4.20
3730 8418 4.378046 CGACAAGTAATTTTGAACGGAGGG 60.378 45.833 0.00 0.00 32.65 4.30
3732 8420 5.338614 ACGACAAGTAATTTTGAACGGAG 57.661 39.130 13.67 0.00 36.55 4.63
3734 8422 5.503498 TGAACGACAAGTAATTTTGAACGG 58.497 37.500 13.67 0.00 36.55 4.44
3735 8423 7.425915 TTTGAACGACAAGTAATTTTGAACG 57.574 32.000 0.00 5.24 39.77 3.95
3738 8426 9.574458 TCAAATTTGAACGACAAGTAATTTTGA 57.426 25.926 18.45 0.00 39.77 2.69
3755 8443 9.291664 CGTGGTTTTAGTTTAGTTCAAATTTGA 57.708 29.630 16.91 16.91 34.92 2.69
3756 8444 9.291664 TCGTGGTTTTAGTTTAGTTCAAATTTG 57.708 29.630 12.15 12.15 0.00 2.32
3757 8445 9.292846 GTCGTGGTTTTAGTTTAGTTCAAATTT 57.707 29.630 0.00 0.00 0.00 1.82
3758 8446 7.641020 CGTCGTGGTTTTAGTTTAGTTCAAATT 59.359 33.333 0.00 0.00 0.00 1.82
3759 8447 7.011295 TCGTCGTGGTTTTAGTTTAGTTCAAAT 59.989 33.333 0.00 0.00 0.00 2.32
3760 8448 6.312426 TCGTCGTGGTTTTAGTTTAGTTCAAA 59.688 34.615 0.00 0.00 0.00 2.69
3761 8449 5.809562 TCGTCGTGGTTTTAGTTTAGTTCAA 59.190 36.000 0.00 0.00 0.00 2.69
3762 8450 5.347342 TCGTCGTGGTTTTAGTTTAGTTCA 58.653 37.500 0.00 0.00 0.00 3.18
3763 8451 5.460091 ACTCGTCGTGGTTTTAGTTTAGTTC 59.540 40.000 0.00 0.00 0.00 3.01
3764 8452 5.351458 ACTCGTCGTGGTTTTAGTTTAGTT 58.649 37.500 0.00 0.00 0.00 2.24
3765 8453 4.936891 ACTCGTCGTGGTTTTAGTTTAGT 58.063 39.130 0.00 0.00 0.00 2.24
3766 8454 6.991485 TTACTCGTCGTGGTTTTAGTTTAG 57.009 37.500 0.00 0.00 0.00 1.85
3767 8455 7.945033 AATTACTCGTCGTGGTTTTAGTTTA 57.055 32.000 0.00 0.00 0.00 2.01
3768 8456 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
3769 8457 6.849588 AAATTACTCGTCGTGGTTTTAGTT 57.150 33.333 0.00 0.00 0.00 2.24
3770 8458 7.945033 TTAAATTACTCGTCGTGGTTTTAGT 57.055 32.000 0.00 0.00 0.00 2.24
3771 8459 9.095529 GTTTTAAATTACTCGTCGTGGTTTTAG 57.904 33.333 0.00 0.00 0.00 1.85
3772 8460 7.791590 CGTTTTAAATTACTCGTCGTGGTTTTA 59.208 33.333 0.00 0.00 0.00 1.52
3773 8461 6.628461 CGTTTTAAATTACTCGTCGTGGTTTT 59.372 34.615 0.00 0.00 0.00 2.43
3774 8462 6.128729 CGTTTTAAATTACTCGTCGTGGTTT 58.871 36.000 0.00 0.79 0.00 3.27
3775 8463 5.333263 CCGTTTTAAATTACTCGTCGTGGTT 60.333 40.000 0.00 0.00 0.00 3.67
3776 8464 4.150451 CCGTTTTAAATTACTCGTCGTGGT 59.850 41.667 0.00 0.00 0.00 4.16
3777 8465 4.385447 TCCGTTTTAAATTACTCGTCGTGG 59.615 41.667 0.00 0.00 0.00 4.94
3778 8466 5.443693 CCTCCGTTTTAAATTACTCGTCGTG 60.444 44.000 0.00 0.00 0.00 4.35
3779 8467 4.622740 CCTCCGTTTTAAATTACTCGTCGT 59.377 41.667 0.00 0.00 0.00 4.34
3780 8468 4.032104 CCCTCCGTTTTAAATTACTCGTCG 59.968 45.833 0.00 0.00 0.00 5.12
3781 8469 5.170748 TCCCTCCGTTTTAAATTACTCGTC 58.829 41.667 0.00 0.00 0.00 4.20
3782 8470 5.151297 TCCCTCCGTTTTAAATTACTCGT 57.849 39.130 0.00 0.00 0.00 4.18
3783 8471 5.063060 CACTCCCTCCGTTTTAAATTACTCG 59.937 44.000 0.00 0.00 0.00 4.18
3784 8472 6.168389 TCACTCCCTCCGTTTTAAATTACTC 58.832 40.000 0.00 0.00 0.00 2.59
3785 8473 6.117975 TCACTCCCTCCGTTTTAAATTACT 57.882 37.500 0.00 0.00 0.00 2.24
3786 8474 6.183360 CCATCACTCCCTCCGTTTTAAATTAC 60.183 42.308 0.00 0.00 0.00 1.89
3787 8475 5.883673 CCATCACTCCCTCCGTTTTAAATTA 59.116 40.000 0.00 0.00 0.00 1.40
3788 8476 4.705023 CCATCACTCCCTCCGTTTTAAATT 59.295 41.667 0.00 0.00 0.00 1.82
3789 8477 4.263771 ACCATCACTCCCTCCGTTTTAAAT 60.264 41.667 0.00 0.00 0.00 1.40
3790 8478 3.073356 ACCATCACTCCCTCCGTTTTAAA 59.927 43.478 0.00 0.00 0.00 1.52
3791 8479 2.640826 ACCATCACTCCCTCCGTTTTAA 59.359 45.455 0.00 0.00 0.00 1.52
3792 8480 2.262637 ACCATCACTCCCTCCGTTTTA 58.737 47.619 0.00 0.00 0.00 1.52
3793 8481 1.064825 ACCATCACTCCCTCCGTTTT 58.935 50.000 0.00 0.00 0.00 2.43
3794 8482 1.064825 AACCATCACTCCCTCCGTTT 58.935 50.000 0.00 0.00 0.00 3.60
3795 8483 1.064825 AAACCATCACTCCCTCCGTT 58.935 50.000 0.00 0.00 0.00 4.44
3796 8484 1.553704 GTAAACCATCACTCCCTCCGT 59.446 52.381 0.00 0.00 0.00 4.69
3797 8485 1.134491 GGTAAACCATCACTCCCTCCG 60.134 57.143 0.00 0.00 35.64 4.63
3798 8486 1.913419 TGGTAAACCATCACTCCCTCC 59.087 52.381 0.00 0.00 42.01 4.30
3799 8487 2.092914 CCTGGTAAACCATCACTCCCTC 60.093 54.545 1.51 0.00 46.46 4.30
3800 8488 1.916181 CCTGGTAAACCATCACTCCCT 59.084 52.381 1.51 0.00 46.46 4.20
3801 8489 1.682087 GCCTGGTAAACCATCACTCCC 60.682 57.143 1.51 0.00 46.46 4.30
3802 8490 1.282157 AGCCTGGTAAACCATCACTCC 59.718 52.381 1.51 0.00 46.46 3.85
3803 8491 2.789409 AGCCTGGTAAACCATCACTC 57.211 50.000 1.51 0.00 46.46 3.51
3804 8492 2.092914 GCTAGCCTGGTAAACCATCACT 60.093 50.000 2.29 3.48 46.46 3.41
3805 8493 2.289565 GCTAGCCTGGTAAACCATCAC 58.710 52.381 2.29 0.00 46.46 3.06
3806 8494 1.912731 TGCTAGCCTGGTAAACCATCA 59.087 47.619 13.29 0.00 46.46 3.07
3807 8495 2.289565 GTGCTAGCCTGGTAAACCATC 58.710 52.381 13.29 0.00 46.46 3.51
3808 8496 1.406887 CGTGCTAGCCTGGTAAACCAT 60.407 52.381 13.29 0.00 46.46 3.55
3825 8513 0.677731 ATGAACCACATGAGGGCGTG 60.678 55.000 14.11 0.00 37.87 5.34
3854 8542 5.766150 TCTTATTTTATCATTGTGGGCGG 57.234 39.130 0.00 0.00 0.00 6.13
3873 8561 3.135530 ACGGAGGGAGTAGTACGTATCTT 59.864 47.826 0.00 0.00 32.30 2.40
3879 8567 4.907879 ATTTTACGGAGGGAGTAGTACG 57.092 45.455 0.00 0.00 0.00 3.67
3881 8569 7.885399 GGAGTATATTTTACGGAGGGAGTAGTA 59.115 40.741 0.00 0.00 0.00 1.82
3882 8570 6.718912 GGAGTATATTTTACGGAGGGAGTAGT 59.281 42.308 0.00 0.00 0.00 2.73
3883 8571 6.152492 GGGAGTATATTTTACGGAGGGAGTAG 59.848 46.154 0.00 0.00 0.00 2.57
3884 8572 6.012745 GGGAGTATATTTTACGGAGGGAGTA 58.987 44.000 0.00 0.00 0.00 2.59
3885 8573 4.837298 GGGAGTATATTTTACGGAGGGAGT 59.163 45.833 0.00 0.00 0.00 3.85
3886 8574 5.085219 AGGGAGTATATTTTACGGAGGGAG 58.915 45.833 0.00 0.00 0.00 4.30
3887 8575 5.082425 GAGGGAGTATATTTTACGGAGGGA 58.918 45.833 0.00 0.00 0.00 4.20
3888 8576 4.222366 GGAGGGAGTATATTTTACGGAGGG 59.778 50.000 0.00 0.00 0.00 4.30
3889 8577 4.082354 CGGAGGGAGTATATTTTACGGAGG 60.082 50.000 0.00 0.00 0.00 4.30
3890 8578 4.522022 ACGGAGGGAGTATATTTTACGGAG 59.478 45.833 0.00 0.00 0.00 4.63
3891 8579 4.473444 ACGGAGGGAGTATATTTTACGGA 58.527 43.478 0.00 0.00 0.00 4.69
3892 8580 4.861102 ACGGAGGGAGTATATTTTACGG 57.139 45.455 0.00 0.00 0.00 4.02
3893 8581 5.225642 GGAACGGAGGGAGTATATTTTACG 58.774 45.833 0.00 0.00 0.00 3.18
3912 8600 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
3913 8601 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
3914 8602 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
3922 8610 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
3923 8611 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3925 8613 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3926 8614 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3966 8654 9.961264 TCTAAATACGGATGTATCTAGACTCAT 57.039 33.333 10.15 10.15 40.42 2.90
3974 8662 8.647796 TGGATTTGTCTAAATACGGATGTATCT 58.352 33.333 0.00 0.00 40.42 1.98
3975 8663 8.827177 TGGATTTGTCTAAATACGGATGTATC 57.173 34.615 0.00 0.00 40.42 2.24
3978 8666 9.052759 GTATTGGATTTGTCTAAATACGGATGT 57.947 33.333 0.00 0.00 39.54 3.06
3979 8667 9.051679 TGTATTGGATTTGTCTAAATACGGATG 57.948 33.333 0.00 0.00 39.54 3.51
3980 8668 9.621629 TTGTATTGGATTTGTCTAAATACGGAT 57.378 29.630 0.00 0.00 39.54 4.18
3982 8670 8.889717 AGTTGTATTGGATTTGTCTAAATACGG 58.110 33.333 0.00 0.00 39.54 4.02
3999 8687 9.667107 TCCCTCTGTTCTAAATTAGTTGTATTG 57.333 33.333 0.00 0.00 0.00 1.90
4000 8688 9.892130 CTCCCTCTGTTCTAAATTAGTTGTATT 57.108 33.333 0.00 0.00 0.00 1.89
4001 8689 9.047947 ACTCCCTCTGTTCTAAATTAGTTGTAT 57.952 33.333 0.00 0.00 0.00 2.29
4002 8690 8.431910 ACTCCCTCTGTTCTAAATTAGTTGTA 57.568 34.615 0.00 0.00 0.00 2.41
4003 8691 7.317722 ACTCCCTCTGTTCTAAATTAGTTGT 57.682 36.000 0.00 0.00 0.00 3.32
4004 8692 9.372369 CTTACTCCCTCTGTTCTAAATTAGTTG 57.628 37.037 0.00 0.00 0.00 3.16
4005 8693 9.322769 TCTTACTCCCTCTGTTCTAAATTAGTT 57.677 33.333 0.00 0.00 0.00 2.24
4007 8695 7.923878 GCTCTTACTCCCTCTGTTCTAAATTAG 59.076 40.741 0.00 0.00 0.00 1.73
4008 8696 7.620094 AGCTCTTACTCCCTCTGTTCTAAATTA 59.380 37.037 0.00 0.00 0.00 1.40
4010 8698 5.961421 AGCTCTTACTCCCTCTGTTCTAAAT 59.039 40.000 0.00 0.00 0.00 1.40
4013 8701 4.594675 AGCTCTTACTCCCTCTGTTCTA 57.405 45.455 0.00 0.00 0.00 2.10
4014 8702 3.466395 AGCTCTTACTCCCTCTGTTCT 57.534 47.619 0.00 0.00 0.00 3.01
4015 8703 4.017808 TGTAGCTCTTACTCCCTCTGTTC 58.982 47.826 0.00 0.00 33.23 3.18
4016 8704 4.048970 TGTAGCTCTTACTCCCTCTGTT 57.951 45.455 0.00 0.00 33.23 3.16
4017 8705 3.741245 TGTAGCTCTTACTCCCTCTGT 57.259 47.619 0.00 0.00 33.23 3.41
4019 8707 4.615513 ACATTGTAGCTCTTACTCCCTCT 58.384 43.478 0.00 0.00 33.23 3.69
4020 8708 5.346181 AACATTGTAGCTCTTACTCCCTC 57.654 43.478 0.00 0.00 33.23 4.30
4022 8710 5.582665 CAGAAACATTGTAGCTCTTACTCCC 59.417 44.000 0.00 0.00 33.23 4.30
4023 8711 6.398918 TCAGAAACATTGTAGCTCTTACTCC 58.601 40.000 0.00 0.00 33.23 3.85
4024 8712 7.316640 TCTCAGAAACATTGTAGCTCTTACTC 58.683 38.462 0.00 0.00 33.23 2.59
4027 8715 7.093354 CACTCTCAGAAACATTGTAGCTCTTA 58.907 38.462 0.00 0.00 0.00 2.10
4028 8716 5.931146 CACTCTCAGAAACATTGTAGCTCTT 59.069 40.000 0.00 0.00 0.00 2.85
4029 8717 5.477510 CACTCTCAGAAACATTGTAGCTCT 58.522 41.667 0.00 0.00 0.00 4.09
4030 8718 4.629200 CCACTCTCAGAAACATTGTAGCTC 59.371 45.833 0.00 0.00 0.00 4.09
4031 8719 4.573900 CCACTCTCAGAAACATTGTAGCT 58.426 43.478 0.00 0.00 0.00 3.32
4032 8720 3.126000 GCCACTCTCAGAAACATTGTAGC 59.874 47.826 0.00 0.00 0.00 3.58
4033 8721 4.318332 TGCCACTCTCAGAAACATTGTAG 58.682 43.478 0.00 0.00 0.00 2.74
4041 11353 1.214175 TGGGTTTGCCACTCTCAGAAA 59.786 47.619 0.00 0.00 36.17 2.52
4053 11365 5.414454 TCATTGTAGTATCTGTTGGGTTTGC 59.586 40.000 0.00 0.00 0.00 3.68
4058 11370 7.864108 TTGAATCATTGTAGTATCTGTTGGG 57.136 36.000 0.00 0.00 0.00 4.12
4111 11423 4.618965 GTCGATGACCCTAGATTTGGTAC 58.381 47.826 0.00 0.00 34.20 3.34
4113 11425 2.100916 CGTCGATGACCCTAGATTTGGT 59.899 50.000 0.00 0.00 37.64 3.67
4125 11437 4.710528 AAGTTTCAGAAACGTCGATGAC 57.289 40.909 18.43 2.57 45.88 3.06
4131 11443 3.626217 ACCTCCAAAGTTTCAGAAACGTC 59.374 43.478 18.43 0.00 45.88 4.34
4133 11445 4.142469 ACAACCTCCAAAGTTTCAGAAACG 60.142 41.667 18.43 6.39 45.88 3.60
4146 11458 1.073284 GGTGCTCCTTACAACCTCCAA 59.927 52.381 0.00 0.00 0.00 3.53
4147 11459 0.690762 GGTGCTCCTTACAACCTCCA 59.309 55.000 0.00 0.00 0.00 3.86
4152 11464 1.946283 GCCTGAGGTGCTCCTTACAAC 60.946 57.143 9.08 0.00 45.24 3.32
4187 11499 1.028905 TGAAAAAGAGCAACCCCGTG 58.971 50.000 0.00 0.00 0.00 4.94
4188 11500 1.770294 TTGAAAAAGAGCAACCCCGT 58.230 45.000 0.00 0.00 0.00 5.28
4189 11501 4.513198 TTATTGAAAAAGAGCAACCCCG 57.487 40.909 0.00 0.00 0.00 5.73
4190 11502 5.926542 GTCTTTATTGAAAAAGAGCAACCCC 59.073 40.000 0.00 0.00 44.09 4.95
4191 11503 6.420903 GTGTCTTTATTGAAAAAGAGCAACCC 59.579 38.462 0.00 0.00 44.09 4.11
4193 11505 6.420903 GGGTGTCTTTATTGAAAAAGAGCAAC 59.579 38.462 0.00 4.56 44.09 4.17
4198 11510 7.494298 GCTTTTGGGTGTCTTTATTGAAAAAGA 59.506 33.333 7.93 0.00 41.90 2.52
4199 11511 7.279758 TGCTTTTGGGTGTCTTTATTGAAAAAG 59.720 33.333 0.00 0.00 37.73 2.27
4200 11512 7.106239 TGCTTTTGGGTGTCTTTATTGAAAAA 58.894 30.769 0.00 0.00 0.00 1.94
4201 11513 6.644347 TGCTTTTGGGTGTCTTTATTGAAAA 58.356 32.000 0.00 0.00 0.00 2.29
4202 11514 6.227298 TGCTTTTGGGTGTCTTTATTGAAA 57.773 33.333 0.00 0.00 0.00 2.69
4204 11516 6.418057 AATGCTTTTGGGTGTCTTTATTGA 57.582 33.333 0.00 0.00 0.00 2.57
4205 11517 7.872483 ACTAAATGCTTTTGGGTGTCTTTATTG 59.128 33.333 12.12 0.00 0.00 1.90
4206 11518 7.962441 ACTAAATGCTTTTGGGTGTCTTTATT 58.038 30.769 12.12 0.00 0.00 1.40
4207 11519 7.539034 ACTAAATGCTTTTGGGTGTCTTTAT 57.461 32.000 12.12 0.00 0.00 1.40
4208 11520 6.969993 ACTAAATGCTTTTGGGTGTCTTTA 57.030 33.333 12.12 0.00 0.00 1.85
4209 11521 5.869649 ACTAAATGCTTTTGGGTGTCTTT 57.130 34.783 12.12 0.00 0.00 2.52
4211 11523 5.381757 TGTACTAAATGCTTTTGGGTGTCT 58.618 37.500 12.12 0.00 0.00 3.41
4212 11524 5.699097 TGTACTAAATGCTTTTGGGTGTC 57.301 39.130 12.12 7.64 0.00 3.67
4213 11525 6.454795 CATTGTACTAAATGCTTTTGGGTGT 58.545 36.000 12.12 6.70 31.19 4.16
4214 11526 5.868801 CCATTGTACTAAATGCTTTTGGGTG 59.131 40.000 12.12 4.24 36.42 4.61
4290 11917 8.716909 GCAATTAGAGGAAGAAGACTAATATGC 58.283 37.037 1.77 1.77 35.43 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.