Multiple sequence alignment - TraesCS6A01G271700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G271700 chr6A 100.000 7611 0 0 1 7611 498594577 498586967 0.000000e+00 14055
1 TraesCS6A01G271700 chr6A 79.403 335 47 14 4964 5277 248546151 248545818 4.620000e-52 217
2 TraesCS6A01G271700 chr6D 96.251 4161 111 20 569 4688 355877112 355872956 0.000000e+00 6778
3 TraesCS6A01G271700 chr6D 93.012 1989 106 15 5639 7611 355871978 355870007 0.000000e+00 2872
4 TraesCS6A01G271700 chr6D 89.852 542 30 11 4805 5321 355872965 355872424 0.000000e+00 673
5 TraesCS6A01G271700 chr6D 88.822 331 17 6 5319 5642 355872320 355872003 9.260000e-104 388
6 TraesCS6A01G271700 chr6D 86.142 267 21 7 228 486 355880485 355880227 2.710000e-69 274
7 TraesCS6A01G271700 chr6B 96.473 2240 63 3 225 2456 536848724 536846493 0.000000e+00 3685
8 TraesCS6A01G271700 chr6B 89.607 2877 187 42 4805 7608 536844188 536841351 0.000000e+00 3554
9 TraesCS6A01G271700 chr6B 92.204 1937 92 31 2481 4384 536846337 536844427 0.000000e+00 2686
10 TraesCS6A01G271700 chr6B 85.957 235 27 3 4460 4688 536844413 536844179 5.900000e-61 246
11 TraesCS6A01G271700 chr6B 95.172 145 6 1 4668 4811 678328950 678328806 2.140000e-55 228
12 TraesCS6A01G271700 chr6B 94.444 144 5 3 4668 4808 191197992 191198135 1.290000e-52 219
13 TraesCS6A01G271700 chr6B 77.632 304 46 12 4964 5246 398844833 398845135 1.700000e-36 165
14 TraesCS6A01G271700 chr4A 99.213 127 1 0 4680 4806 4530223 4530097 5.940000e-56 230
15 TraesCS6A01G271700 chr4A 93.458 107 7 0 1 107 490857533 490857427 7.900000e-35 159
16 TraesCS6A01G271700 chr1B 98.462 130 2 0 4677 4806 572202436 572202565 5.940000e-56 230
17 TraesCS6A01G271700 chr1B 97.727 132 3 0 4676 4807 277456429 277456298 2.140000e-55 228
18 TraesCS6A01G271700 chr1B 95.070 142 6 1 4668 4808 649332717 649332858 9.940000e-54 222
19 TraesCS6A01G271700 chr1B 93.137 102 7 0 3 104 667203597 667203496 4.760000e-32 150
20 TraesCS6A01G271700 chr2B 98.462 130 1 1 4680 4809 603917335 603917207 2.140000e-55 228
21 TraesCS6A01G271700 chr2B 95.683 139 4 2 4669 4806 190237301 190237164 9.940000e-54 222
22 TraesCS6A01G271700 chr2B 93.137 102 7 0 3 104 135777475 135777374 4.760000e-32 150
23 TraesCS6A01G271700 chr5D 94.366 142 8 0 4666 4807 76220057 76219916 1.290000e-52 219
24 TraesCS6A01G271700 chr5A 94.393 107 6 0 1 107 597081451 597081557 1.700000e-36 165
25 TraesCS6A01G271700 chr5A 93.396 106 7 0 3 108 314941932 314942037 2.840000e-34 158
26 TraesCS6A01G271700 chr5A 93.269 104 7 0 1 104 321903474 321903371 3.680000e-33 154
27 TraesCS6A01G271700 chr7A 94.231 104 6 0 1 104 37362223 37362120 7.900000e-35 159
28 TraesCS6A01G271700 chr4B 91.818 110 9 0 1 110 625856378 625856269 3.680000e-33 154
29 TraesCS6A01G271700 chr3A 92.523 107 8 0 1 107 585323564 585323458 3.680000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G271700 chr6A 498586967 498594577 7610 True 14055.00 14055 100.00000 1 7611 1 chr6A.!!$R2 7610
1 TraesCS6A01G271700 chr6D 355870007 355880485 10478 True 2197.00 6778 90.81580 228 7611 5 chr6D.!!$R1 7383
2 TraesCS6A01G271700 chr6B 536841351 536848724 7373 True 2542.75 3685 91.06025 225 7608 4 chr6B.!!$R2 7383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.095417 GAGCAATGCCGACGAGTTTC 59.905 55.000 0.00 0.00 0.00 2.78 F
175 176 0.320771 AGCAATGCCGACGAGTTTCT 60.321 50.000 0.00 0.00 0.00 2.52 F
176 177 0.095417 GCAATGCCGACGAGTTTCTC 59.905 55.000 0.00 0.00 0.00 2.87 F
1199 4255 0.550914 TTGAGTCCCAGCAAAGGTGT 59.449 50.000 0.00 0.00 0.00 4.16 F
1250 4306 1.002274 GGAGGAGGAGGCAGAGGAA 59.998 63.158 0.00 0.00 0.00 3.36 F
1484 4540 1.135721 GGCATTGACTCTGAATTGGGC 59.864 52.381 0.00 0.00 0.00 5.36 F
3065 6267 0.599060 TCATTGTACGTGCTGTCCGA 59.401 50.000 4.97 0.00 0.00 4.55 F
3068 6270 0.102663 TTGTACGTGCTGTCCGACAA 59.897 50.000 4.97 0.00 0.00 3.18 F
4700 7938 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89 F
4802 8040 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
6571 10026 0.106894 CCCTAGATGGAGTTTCCGGC 59.893 60.000 0.00 0.00 40.17 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1295 4351 0.249489 CTTTATGGACGCCTCCTCCG 60.249 60.000 3.30 0.00 37.48 4.63 R
1374 4430 1.078143 CTGCCTTAGCCACTCCACC 60.078 63.158 0.00 0.00 38.69 4.61 R
1506 4562 1.180029 GCTGTGCCTGGATCACAAAT 58.820 50.000 0.00 0.00 43.02 2.32 R
2203 5259 1.371558 GTCCCCAGGTGACAGTGTC 59.628 63.158 16.68 16.68 32.91 3.67 R
2320 5376 1.880340 GCGAGATTCCAGAGCCACG 60.880 63.158 0.00 0.00 0.00 4.94 R
3068 6270 2.919228 GTCACAAGGACACTTTCACCT 58.081 47.619 0.00 0.00 46.19 4.00 R
4783 8021 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 R
4786 8024 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17 R
6577 10032 0.250901 GAAGAGTGGGCTGGCTGAAA 60.251 55.000 0.00 0.00 0.00 2.69 R
6598 10053 1.000283 GGTGTGCGCTAGCTGATAGAT 60.000 52.381 13.93 0.00 45.42 1.98 R
7372 10838 1.882912 ATCAGACAGCGAAAACAGCA 58.117 45.000 0.00 0.00 37.01 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.880822 CATTCTAATGCAAAACTGGACATG 57.119 37.500 0.00 0.00 0.00 3.21
24 25 6.392354 CATTCTAATGCAAAACTGGACATGT 58.608 36.000 0.00 0.00 0.00 3.21
25 26 7.537715 CATTCTAATGCAAAACTGGACATGTA 58.462 34.615 0.00 0.00 0.00 2.29
26 27 7.701539 TTCTAATGCAAAACTGGACATGTAT 57.298 32.000 0.00 0.00 0.00 2.29
27 28 8.800370 TTCTAATGCAAAACTGGACATGTATA 57.200 30.769 0.00 0.00 0.00 1.47
28 29 8.208718 TCTAATGCAAAACTGGACATGTATAC 57.791 34.615 0.00 0.00 0.00 1.47
29 30 4.937696 TGCAAAACTGGACATGTATACG 57.062 40.909 0.00 0.00 0.00 3.06
30 31 4.570930 TGCAAAACTGGACATGTATACGA 58.429 39.130 0.00 0.00 0.00 3.43
31 32 4.629634 TGCAAAACTGGACATGTATACGAG 59.370 41.667 0.00 0.00 0.00 4.18
32 33 4.868171 GCAAAACTGGACATGTATACGAGA 59.132 41.667 0.00 0.00 0.00 4.04
33 34 5.005779 GCAAAACTGGACATGTATACGAGAG 59.994 44.000 0.00 0.00 0.00 3.20
34 35 6.330278 CAAAACTGGACATGTATACGAGAGA 58.670 40.000 0.00 0.00 0.00 3.10
35 36 6.525578 AAACTGGACATGTATACGAGAGAA 57.474 37.500 0.00 0.00 0.00 2.87
36 37 6.716934 AACTGGACATGTATACGAGAGAAT 57.283 37.500 0.00 0.00 0.00 2.40
37 38 6.320494 ACTGGACATGTATACGAGAGAATC 57.680 41.667 0.00 0.00 0.00 2.52
93 94 9.445878 AGACATCCAAATATAGACATGCTATTG 57.554 33.333 12.77 7.87 40.30 1.90
94 95 8.571461 ACATCCAAATATAGACATGCTATTGG 57.429 34.615 12.77 14.06 40.30 3.16
95 96 8.385491 ACATCCAAATATAGACATGCTATTGGA 58.615 33.333 20.63 20.63 44.11 3.53
96 97 8.890718 CATCCAAATATAGACATGCTATTGGAG 58.109 37.037 21.69 15.38 43.64 3.86
97 98 8.206126 TCCAAATATAGACATGCTATTGGAGA 57.794 34.615 17.54 8.26 39.29 3.71
98 99 8.829746 TCCAAATATAGACATGCTATTGGAGAT 58.170 33.333 17.54 5.67 39.29 2.75
99 100 8.890718 CCAAATATAGACATGCTATTGGAGATG 58.109 37.037 15.62 0.00 38.31 2.90
100 101 8.890718 CAAATATAGACATGCTATTGGAGATGG 58.109 37.037 12.77 0.00 40.30 3.51
101 102 7.746243 ATATAGACATGCTATTGGAGATGGT 57.254 36.000 12.77 0.00 40.30 3.55
102 103 4.348863 AGACATGCTATTGGAGATGGTC 57.651 45.455 0.00 0.00 0.00 4.02
103 104 3.972638 AGACATGCTATTGGAGATGGTCT 59.027 43.478 0.00 0.00 0.00 3.85
104 105 5.150715 AGACATGCTATTGGAGATGGTCTA 58.849 41.667 0.00 0.00 0.00 2.59
105 106 5.604231 AGACATGCTATTGGAGATGGTCTAA 59.396 40.000 0.00 0.00 0.00 2.10
106 107 5.862845 ACATGCTATTGGAGATGGTCTAAG 58.137 41.667 0.00 0.00 0.00 2.18
107 108 5.367937 ACATGCTATTGGAGATGGTCTAAGT 59.632 40.000 0.00 0.00 0.00 2.24
108 109 6.554982 ACATGCTATTGGAGATGGTCTAAGTA 59.445 38.462 0.00 0.00 0.00 2.24
109 110 7.071196 ACATGCTATTGGAGATGGTCTAAGTAA 59.929 37.037 0.00 0.00 0.00 2.24
110 111 6.817184 TGCTATTGGAGATGGTCTAAGTAAC 58.183 40.000 0.00 0.00 0.00 2.50
111 112 5.921408 GCTATTGGAGATGGTCTAAGTAACG 59.079 44.000 0.00 0.00 0.00 3.18
112 113 6.238953 GCTATTGGAGATGGTCTAAGTAACGA 60.239 42.308 0.00 0.00 0.00 3.85
113 114 5.988310 TTGGAGATGGTCTAAGTAACGAA 57.012 39.130 0.00 0.00 0.00 3.85
114 115 5.578005 TGGAGATGGTCTAAGTAACGAAG 57.422 43.478 0.00 0.00 0.00 3.79
115 116 4.142227 TGGAGATGGTCTAAGTAACGAAGC 60.142 45.833 0.00 0.00 0.00 3.86
116 117 4.030134 AGATGGTCTAAGTAACGAAGCG 57.970 45.455 0.00 0.00 0.00 4.68
117 118 3.442977 AGATGGTCTAAGTAACGAAGCGT 59.557 43.478 0.00 0.00 43.97 5.07
131 132 2.202349 GCGTTGAGCAATGCCGAC 60.202 61.111 14.79 2.87 45.10 4.79
132 133 2.096406 CGTTGAGCAATGCCGACG 59.904 61.111 17.36 17.36 33.24 5.12
133 134 2.379634 CGTTGAGCAATGCCGACGA 61.380 57.895 22.92 5.79 38.17 4.20
134 135 1.421485 GTTGAGCAATGCCGACGAG 59.579 57.895 0.00 0.00 0.00 4.18
135 136 1.005037 TTGAGCAATGCCGACGAGT 60.005 52.632 0.00 0.00 0.00 4.18
136 137 0.602638 TTGAGCAATGCCGACGAGTT 60.603 50.000 0.00 0.00 0.00 3.01
137 138 1.291184 TGAGCAATGCCGACGAGTTG 61.291 55.000 0.00 0.00 0.00 3.16
138 139 2.202349 GCAATGCCGACGAGTTGC 60.202 61.111 13.25 13.25 39.94 4.17
139 140 2.480555 CAATGCCGACGAGTTGCC 59.519 61.111 0.00 0.00 0.00 4.52
140 141 3.118454 AATGCCGACGAGTTGCCG 61.118 61.111 0.00 0.00 0.00 5.69
144 145 3.342627 CCGACGAGTTGCCGCAAA 61.343 61.111 7.54 0.00 0.00 3.68
145 146 2.629210 CGACGAGTTGCCGCAAAA 59.371 55.556 7.54 0.00 0.00 2.44
146 147 1.010574 CGACGAGTTGCCGCAAAAA 60.011 52.632 7.54 0.00 0.00 1.94
168 169 3.773117 AAAAAGAGCAATGCCGACG 57.227 47.368 0.00 0.00 0.00 5.12
169 170 1.234821 AAAAAGAGCAATGCCGACGA 58.765 45.000 0.00 0.00 0.00 4.20
170 171 0.798776 AAAAGAGCAATGCCGACGAG 59.201 50.000 0.00 0.00 0.00 4.18
171 172 0.320771 AAAGAGCAATGCCGACGAGT 60.321 50.000 0.00 0.00 0.00 4.18
172 173 0.320771 AAGAGCAATGCCGACGAGTT 60.321 50.000 0.00 0.00 0.00 3.01
173 174 0.320771 AGAGCAATGCCGACGAGTTT 60.321 50.000 0.00 0.00 0.00 2.66
174 175 0.095417 GAGCAATGCCGACGAGTTTC 59.905 55.000 0.00 0.00 0.00 2.78
175 176 0.320771 AGCAATGCCGACGAGTTTCT 60.321 50.000 0.00 0.00 0.00 2.52
176 177 0.095417 GCAATGCCGACGAGTTTCTC 59.905 55.000 0.00 0.00 0.00 2.87
190 191 5.996669 GAGTTTCTCGTTCAGGGTAAAAA 57.003 39.130 0.00 0.00 0.00 1.94
191 192 5.745514 GAGTTTCTCGTTCAGGGTAAAAAC 58.254 41.667 0.00 0.00 0.00 2.43
192 193 4.577693 AGTTTCTCGTTCAGGGTAAAAACC 59.422 41.667 0.00 0.00 0.00 3.27
193 194 4.426736 TTCTCGTTCAGGGTAAAAACCT 57.573 40.909 0.00 0.00 39.43 3.50
194 195 4.426736 TCTCGTTCAGGGTAAAAACCTT 57.573 40.909 0.00 0.00 35.78 3.50
195 196 5.549742 TCTCGTTCAGGGTAAAAACCTTA 57.450 39.130 0.00 0.00 35.78 2.69
196 197 5.299949 TCTCGTTCAGGGTAAAAACCTTAC 58.700 41.667 0.00 0.00 35.78 2.34
197 198 5.033589 TCGTTCAGGGTAAAAACCTTACA 57.966 39.130 0.00 0.00 35.78 2.41
198 199 5.623169 TCGTTCAGGGTAAAAACCTTACAT 58.377 37.500 0.00 0.00 35.78 2.29
199 200 5.702209 TCGTTCAGGGTAAAAACCTTACATC 59.298 40.000 0.00 0.00 35.78 3.06
200 201 5.704053 CGTTCAGGGTAAAAACCTTACATCT 59.296 40.000 0.00 0.00 35.78 2.90
201 202 6.875195 CGTTCAGGGTAAAAACCTTACATCTA 59.125 38.462 0.00 0.00 35.78 1.98
202 203 7.148523 CGTTCAGGGTAAAAACCTTACATCTAC 60.149 40.741 0.00 0.00 35.78 2.59
203 204 7.563724 TCAGGGTAAAAACCTTACATCTACT 57.436 36.000 0.00 0.00 35.78 2.57
204 205 7.391620 TCAGGGTAAAAACCTTACATCTACTG 58.608 38.462 0.00 0.00 35.78 2.74
205 206 7.016858 TCAGGGTAAAAACCTTACATCTACTGT 59.983 37.037 0.00 0.00 37.85 3.55
206 207 8.316214 CAGGGTAAAAACCTTACATCTACTGTA 58.684 37.037 0.00 0.00 36.30 2.74
207 208 9.054580 AGGGTAAAAACCTTACATCTACTGTAT 57.945 33.333 0.00 0.00 40.02 2.29
208 209 9.106070 GGGTAAAAACCTTACATCTACTGTATG 57.894 37.037 0.00 0.00 40.02 2.39
209 210 9.662947 GGTAAAAACCTTACATCTACTGTATGT 57.337 33.333 2.15 2.15 40.02 2.29
219 220 6.987386 ACATCTACTGTATGTAAGATGCTCC 58.013 40.000 14.40 0.00 38.65 4.70
220 221 6.780031 ACATCTACTGTATGTAAGATGCTCCT 59.220 38.462 14.40 0.00 38.65 3.69
221 222 6.641169 TCTACTGTATGTAAGATGCTCCTG 57.359 41.667 0.00 0.00 0.00 3.86
222 223 4.065321 ACTGTATGTAAGATGCTCCTGC 57.935 45.455 0.00 0.00 40.20 4.85
223 224 3.181461 ACTGTATGTAAGATGCTCCTGCC 60.181 47.826 0.00 0.00 38.71 4.85
274 275 4.052229 AACTCACGTAGCGCGGCT 62.052 61.111 8.83 8.38 46.52 5.52
318 319 4.148825 CCGACCGCCTCCCAAGAG 62.149 72.222 0.00 0.00 40.09 2.85
319 320 4.821589 CGACCGCCTCCCAAGAGC 62.822 72.222 0.00 0.00 38.96 4.09
320 321 4.821589 GACCGCCTCCCAAGAGCG 62.822 72.222 0.00 0.00 38.96 5.03
325 326 3.721706 CCTCCCAAGAGCGCCCTT 61.722 66.667 2.29 0.00 38.96 3.95
366 367 4.465512 CGTGCCATCGCCACAAGC 62.466 66.667 0.00 0.00 38.52 4.01
387 388 1.807573 AAAGTCTAGAGCAGCGCGC 60.808 57.895 26.66 26.66 42.91 6.86
555 3207 1.076044 CCCCGCCCTGATTTTGGAT 60.076 57.895 0.00 0.00 0.00 3.41
574 3226 1.078143 GAACGGAATCAGCCCTGCT 60.078 57.895 0.00 0.00 40.77 4.24
856 3906 1.658686 CGTCTCCTCCTCTTGACCCG 61.659 65.000 0.00 0.00 0.00 5.28
871 3921 4.574614 CCGGGGCCAGGGAGGATA 62.575 72.222 15.78 0.00 41.22 2.59
925 3975 4.840005 CCTCGCTTCCTTCCCGCC 62.840 72.222 0.00 0.00 0.00 6.13
1199 4255 0.550914 TTGAGTCCCAGCAAAGGTGT 59.449 50.000 0.00 0.00 0.00 4.16
1209 4265 1.228657 GCAAAGGTGTGTCTCGACCC 61.229 60.000 0.00 0.00 32.03 4.46
1250 4306 1.002274 GGAGGAGGAGGCAGAGGAA 59.998 63.158 0.00 0.00 0.00 3.36
1313 4369 1.820581 CGGAGGAGGCGTCCATAAA 59.179 57.895 26.40 0.00 46.80 1.40
1374 4430 3.357079 GAGCTTGGCCGGTGTGTG 61.357 66.667 1.90 0.00 0.00 3.82
1484 4540 1.135721 GGCATTGACTCTGAATTGGGC 59.864 52.381 0.00 0.00 0.00 5.36
1506 4562 2.034687 GCAGAAGGCCAGCTTGGA 59.965 61.111 5.01 0.00 40.96 3.53
1683 4739 2.675423 TACGACTGGCGCTCCACT 60.675 61.111 7.64 0.00 46.04 4.00
1767 4823 1.202440 ACGACACCACGAACTAAAGCA 60.202 47.619 0.00 0.00 37.03 3.91
1782 4838 7.778470 AACTAAAGCAGTTCATAGTAGCATC 57.222 36.000 0.00 0.00 44.48 3.91
2167 5223 3.009033 TGGGAGGTCTACATTTGGTTCTG 59.991 47.826 0.00 0.00 0.00 3.02
2203 5259 1.447317 AACACAAGCTGCCTCCAACG 61.447 55.000 0.00 0.00 0.00 4.10
2320 5376 0.676782 AGGACGGTTGCAGCATAACC 60.677 55.000 6.21 6.21 43.25 2.85
2434 5490 9.277783 GATGCACTTACTTATGAGGTATTCAAT 57.722 33.333 0.00 0.00 39.77 2.57
2564 5760 3.376859 TGCTTTCGTTTTATGATCCGCAT 59.623 39.130 0.00 0.00 41.08 4.73
2642 5843 6.478512 ACCAGAACAAAGGAATTTTTAGCA 57.521 33.333 0.00 0.00 0.00 3.49
2644 5845 7.154656 ACCAGAACAAAGGAATTTTTAGCATC 58.845 34.615 0.00 0.00 0.00 3.91
2724 5926 7.230510 TGGCTTAACAACATGAGTGATAAGTTT 59.769 33.333 20.83 5.83 0.00 2.66
2858 6060 2.254546 TCGGTGACAGCAAAGATGTT 57.745 45.000 5.35 0.00 30.17 2.71
3065 6267 0.599060 TCATTGTACGTGCTGTCCGA 59.401 50.000 4.97 0.00 0.00 4.55
3068 6270 0.102663 TTGTACGTGCTGTCCGACAA 59.897 50.000 4.97 0.00 0.00 3.18
3176 6378 4.792087 GTTGGAAACCCTGCTCGA 57.208 55.556 0.00 0.00 42.21 4.04
3851 7053 8.530311 TCAATTGCATGGTATGTCTATGTTTTT 58.470 29.630 0.00 0.00 37.35 1.94
4007 7211 9.070179 CCATGTTTGGTGAATCTGAATCATATA 57.930 33.333 0.00 0.00 38.30 0.86
4016 7220 8.072567 GTGAATCTGAATCATATACTGTTTGGC 58.927 37.037 0.00 0.00 0.00 4.52
4030 7236 1.621814 GTTTGGCCTTTAACCCTTCCC 59.378 52.381 3.32 0.00 0.00 3.97
4094 7300 6.159988 GTCAACACTGTAGCTGTAGATCTTT 58.840 40.000 0.00 0.00 0.00 2.52
4143 7376 9.299963 CAGATGATTATACTACTAGAAGCATGC 57.700 37.037 10.51 10.51 31.83 4.06
4153 7386 4.248859 ACTAGAAGCATGCACACTACTTG 58.751 43.478 21.98 11.77 0.00 3.16
4212 7445 6.991485 AACATGTTTATTTCAACTGAAGCG 57.009 33.333 4.92 0.00 35.21 4.68
4419 7652 4.638421 TGTGGTTGCCGAAGATAATTTAGG 59.362 41.667 0.00 0.00 0.00 2.69
4516 7749 6.013379 ACTCAACTTGGAGGATAAGAACATCA 60.013 38.462 0.00 0.00 39.27 3.07
4523 7756 9.790344 CTTGGAGGATAAGAACATCATATTCTT 57.210 33.333 0.00 0.00 45.92 2.52
4560 7798 7.568861 GCGAATACGGTATTAACTTTCATCCTG 60.569 40.741 13.08 0.00 40.15 3.86
4584 7822 5.882000 GCATTTCTAAGGAAATTTGGCCATT 59.118 36.000 6.09 0.00 46.36 3.16
4588 7826 2.647846 AGGAAATTTGGCCATTCCCT 57.352 45.000 26.32 11.59 42.93 4.20
4679 7917 8.815912 AGCACCCACTTTTCATTTCTTTTATAT 58.184 29.630 0.00 0.00 0.00 0.86
4689 7927 9.555727 TTTCATTTCTTTTATATACTCCCTCCG 57.444 33.333 0.00 0.00 0.00 4.63
4690 7928 8.258850 TCATTTCTTTTATATACTCCCTCCGT 57.741 34.615 0.00 0.00 0.00 4.69
4691 7929 8.365647 TCATTTCTTTTATATACTCCCTCCGTC 58.634 37.037 0.00 0.00 0.00 4.79
4692 7930 6.661304 TTCTTTTATATACTCCCTCCGTCC 57.339 41.667 0.00 0.00 0.00 4.79
4693 7931 4.763793 TCTTTTATATACTCCCTCCGTCCG 59.236 45.833 0.00 0.00 0.00 4.79
4694 7932 4.371624 TTTATATACTCCCTCCGTCCGA 57.628 45.455 0.00 0.00 0.00 4.55
4695 7933 2.965671 ATATACTCCCTCCGTCCGAA 57.034 50.000 0.00 0.00 0.00 4.30
4696 7934 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
4697 7935 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
4698 7936 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
4699 7937 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4700 7938 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4701 7939 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4702 7940 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4703 7941 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4704 7942 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4705 7943 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4706 7944 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
4707 7945 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4708 7946 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4709 7947 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4710 7948 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4711 7949 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4712 7950 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4713 7951 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4714 7952 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4715 7953 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4716 7954 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4717 7955 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4761 7999 9.757227 GAACTAATATACATCTAGATGCATCCC 57.243 37.037 28.86 0.00 42.39 3.85
4762 8000 8.256356 ACTAATATACATCTAGATGCATCCCC 57.744 38.462 28.86 0.00 42.39 4.81
4763 8001 8.070604 ACTAATATACATCTAGATGCATCCCCT 58.929 37.037 28.86 12.73 42.39 4.79
4764 8002 7.761981 AATATACATCTAGATGCATCCCCTT 57.238 36.000 28.86 12.06 42.39 3.95
4765 8003 7.761981 ATATACATCTAGATGCATCCCCTTT 57.238 36.000 28.86 11.41 42.39 3.11
4766 8004 4.803329 ACATCTAGATGCATCCCCTTTT 57.197 40.909 28.86 6.10 42.39 2.27
4767 8005 5.912149 ACATCTAGATGCATCCCCTTTTA 57.088 39.130 28.86 6.97 42.39 1.52
4768 8006 6.460103 ACATCTAGATGCATCCCCTTTTAT 57.540 37.500 28.86 4.58 42.39 1.40
4769 8007 6.856757 ACATCTAGATGCATCCCCTTTTATT 58.143 36.000 28.86 3.84 42.39 1.40
4770 8008 6.944862 ACATCTAGATGCATCCCCTTTTATTC 59.055 38.462 28.86 0.00 42.39 1.75
4771 8009 6.514012 TCTAGATGCATCCCCTTTTATTCA 57.486 37.500 23.06 0.00 0.00 2.57
4772 8010 7.095183 TCTAGATGCATCCCCTTTTATTCAT 57.905 36.000 23.06 2.35 0.00 2.57
4773 8011 7.529555 TCTAGATGCATCCCCTTTTATTCATT 58.470 34.615 23.06 1.91 0.00 2.57
4774 8012 8.006564 TCTAGATGCATCCCCTTTTATTCATTT 58.993 33.333 23.06 1.25 0.00 2.32
4775 8013 7.441903 AGATGCATCCCCTTTTATTCATTTT 57.558 32.000 23.06 0.00 0.00 1.82
4776 8014 7.277396 AGATGCATCCCCTTTTATTCATTTTG 58.723 34.615 23.06 0.00 0.00 2.44
4777 8015 6.617782 TGCATCCCCTTTTATTCATTTTGA 57.382 33.333 0.00 0.00 0.00 2.69
4778 8016 7.197901 TGCATCCCCTTTTATTCATTTTGAT 57.802 32.000 0.00 0.00 0.00 2.57
4779 8017 7.049133 TGCATCCCCTTTTATTCATTTTGATG 58.951 34.615 0.00 0.00 0.00 3.07
4780 8018 7.092979 TGCATCCCCTTTTATTCATTTTGATGA 60.093 33.333 0.00 0.00 0.00 2.92
4781 8019 7.225341 GCATCCCCTTTTATTCATTTTGATGAC 59.775 37.037 0.00 0.00 0.00 3.06
4782 8020 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
4783 8021 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
4784 8022 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
4785 8023 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
4792 8030 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
4793 8031 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
4794 8032 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
4795 8033 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4796 8034 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4797 8035 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4798 8036 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4799 8037 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4800 8038 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4801 8039 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4802 8040 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4803 8041 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4807 8045 2.044650 CCGGACGGAGGGAGTACA 60.045 66.667 4.40 0.00 37.50 2.90
4820 8058 0.250513 GAGTACAACCCTCAGGCCTG 59.749 60.000 27.87 27.87 36.11 4.85
4904 8142 2.423538 ACTGACTGACACAACTTTTGCC 59.576 45.455 0.00 0.00 0.00 4.52
5006 8245 0.686789 TCAAGGCAAGAGTAGCAGCA 59.313 50.000 0.00 0.00 0.00 4.41
5019 8258 0.987081 AGCAGCATGGGAGGAGTCAT 60.987 55.000 0.00 0.00 35.86 3.06
5021 8260 1.684248 GCAGCATGGGAGGAGTCATTT 60.684 52.381 0.00 0.00 35.86 2.32
5115 8393 1.000396 GGTCAAGGGCCTGAGCATT 60.000 57.895 22.07 0.00 42.23 3.56
5161 8439 2.554032 CACGTTTGAGGCAAGGAAGAAT 59.446 45.455 0.00 0.00 0.00 2.40
5248 8527 1.413767 CCGTCTGGCGATCTTCAACG 61.414 60.000 1.87 0.00 44.77 4.10
5277 8559 4.079980 TCCGTTCTGAATCAAGGTTCAA 57.920 40.909 0.00 0.00 37.63 2.69
5282 8564 5.218139 GTTCTGAATCAAGGTTCAAAGCAG 58.782 41.667 0.00 0.00 37.63 4.24
5287 8569 5.128499 TGAATCAAGGTTCAAAGCAGGAAAA 59.872 36.000 0.00 0.00 35.31 2.29
5345 8735 3.610040 TGTGTAGCCACGATCAATCTT 57.390 42.857 0.00 0.00 44.92 2.40
5361 8751 7.148306 CGATCAATCTTTCATCATATGCATGGA 60.148 37.037 10.16 7.43 32.61 3.41
5433 8823 8.816640 ATCACAAAAGATTAACAATCCAACAC 57.183 30.769 0.00 0.00 38.71 3.32
5450 8840 6.315714 TCCAACACAATAAGGTGGGATAAAA 58.684 36.000 0.00 0.00 43.08 1.52
5491 8886 5.003804 AGATGGTTGTGGTAACTGTTCATC 58.996 41.667 0.00 1.64 37.61 2.92
5505 8900 6.101650 ACTGTTCATCTGAGTGTTACATGA 57.898 37.500 0.00 0.00 0.00 3.07
5525 8920 4.023980 TGAGGAACATGTAGTAGGTCTGG 58.976 47.826 0.00 0.00 0.00 3.86
5530 8925 5.655532 GGAACATGTAGTAGGTCTGGAACTA 59.344 44.000 0.00 0.00 0.00 2.24
5545 8940 3.714798 TGGAACTACTTCTGGAACCAACT 59.285 43.478 0.00 0.00 0.00 3.16
5717 9168 3.740115 ACTTGATACCCGAATGCCATAC 58.260 45.455 0.00 0.00 0.00 2.39
5952 9407 9.976511 CACATCAGGATAATTATTCAGCATTTT 57.023 29.630 6.52 0.00 0.00 1.82
5968 9423 5.754406 CAGCATTTTTCATTCACTGGTCAAA 59.246 36.000 0.00 0.00 0.00 2.69
5979 9434 1.271926 ACTGGTCAAACATGGCCCTAC 60.272 52.381 0.00 0.00 31.23 3.18
5985 9440 3.323691 GTCAAACATGGCCCTACCTTTTT 59.676 43.478 0.00 0.00 40.22 1.94
6008 9463 7.485418 TTACGCTCAGATTTTTGAACTTACA 57.515 32.000 0.00 0.00 0.00 2.41
6064 9519 3.326946 AGTGAGATAGCCATCCAGTCT 57.673 47.619 0.00 0.00 0.00 3.24
6187 9642 0.319040 CAGATGCGGTGGTCCTATCG 60.319 60.000 0.00 0.00 33.34 2.92
6222 9677 4.403113 TGCACGGTACCATACATCTTTCTA 59.597 41.667 13.54 0.00 0.00 2.10
6267 9722 5.518848 ACACTGAATGAAGCAATTGACAA 57.481 34.783 10.34 0.00 0.00 3.18
6271 9726 7.811236 ACACTGAATGAAGCAATTGACAATTAG 59.189 33.333 12.98 8.98 0.00 1.73
6528 9983 2.563179 GTCATATCAGGCGGTATGGACT 59.437 50.000 8.87 0.00 0.00 3.85
6562 10017 1.879575 CACCTGGTTCCCTAGATGGA 58.120 55.000 0.00 0.00 38.35 3.41
6565 10020 2.225908 ACCTGGTTCCCTAGATGGAGTT 60.226 50.000 0.00 0.00 38.35 3.01
6571 10026 0.106894 CCCTAGATGGAGTTTCCGGC 59.893 60.000 0.00 0.00 40.17 6.13
6586 10041 2.747855 GGCCTCGGTTTCAGCCAG 60.748 66.667 0.00 0.00 45.07 4.85
6595 10050 0.538287 GTTTCAGCCAGCCCACTCTT 60.538 55.000 0.00 0.00 0.00 2.85
6598 10053 2.530151 AGCCAGCCCACTCTTCCA 60.530 61.111 0.00 0.00 0.00 3.53
6614 10069 1.620822 TCCATCTATCAGCTAGCGCA 58.379 50.000 11.47 0.00 39.10 6.09
6629 10084 1.663388 CGCACACCGCAGTTCACTA 60.663 57.895 0.00 0.00 42.60 2.74
6704 10163 8.392372 AGCTGAAAGATGTATATACAGTCGTA 57.608 34.615 19.80 5.35 39.92 3.43
6710 10169 9.661187 AAAGATGTATATACAGTCGTACGAAAG 57.339 33.333 21.39 17.31 39.92 2.62
6733 10192 6.872920 AGAACTGAAGGCTGAGAAACTATAG 58.127 40.000 0.00 0.00 0.00 1.31
6739 10198 2.170607 GGCTGAGAAACTATAGTGCCCA 59.829 50.000 15.51 7.54 33.66 5.36
6788 10247 7.554118 TCAATCTGTGAAGAAGACAAAGAACTT 59.446 33.333 0.00 0.00 35.61 2.66
6808 10267 9.651913 AGAACTTGAGAAGATATGAAGAGAAAC 57.348 33.333 0.00 0.00 0.00 2.78
6818 10277 7.731054 AGATATGAAGAGAAACTGGTGGATAC 58.269 38.462 0.00 0.00 0.00 2.24
6854 10313 2.084546 GCCAGGTGTGTGGTTATCTTC 58.915 52.381 0.00 0.00 40.09 2.87
6865 10324 7.063544 GTGTGTGGTTATCTTCAGATGACTTAC 59.936 40.741 10.59 10.34 39.91 2.34
6869 10328 6.212589 TGGTTATCTTCAGATGACTTACCACA 59.787 38.462 10.59 0.00 39.91 4.17
6874 10333 4.890158 TCAGATGACTTACCACATGTGT 57.110 40.909 23.79 14.29 38.40 3.72
6999 10458 3.577649 TTCAGCAGAAGGAAGACTACG 57.422 47.619 0.00 0.00 0.00 3.51
7102 10564 7.712264 TTGAGTTCGAAAAATGCATTTCATT 57.288 28.000 24.28 15.97 46.82 2.57
7138 10600 4.512571 GTCACAATACCAAGTTAACGGTGT 59.487 41.667 13.64 5.91 36.69 4.16
7169 10631 8.409358 TCTTAATCCCTGGAAAGAAAAAGAAG 57.591 34.615 0.00 0.00 0.00 2.85
7182 10648 3.420839 AAAAGAAGAAACAGGTGCGTG 57.579 42.857 0.00 0.00 0.00 5.34
7197 10663 1.946768 TGCGTGTCTTTCTTTCCCTTG 59.053 47.619 0.00 0.00 0.00 3.61
7244 10710 8.931775 TGTAACATCCGCATCATGTAATATTAC 58.068 33.333 17.18 17.18 33.12 1.89
7250 10716 5.580691 CCGCATCATGTAATATTACGGATGT 59.419 40.000 33.18 18.30 43.04 3.06
7271 10737 3.884091 GTCGTATGGTCATGTCCTACTCT 59.116 47.826 10.43 0.00 0.00 3.24
7302 10768 9.226606 CGTAGCAAAAATAATTAGATATCCCCA 57.773 33.333 0.00 0.00 0.00 4.96
7305 10771 8.870116 AGCAAAAATAATTAGATATCCCCAACC 58.130 33.333 0.00 0.00 0.00 3.77
7306 10772 7.812669 GCAAAAATAATTAGATATCCCCAACCG 59.187 37.037 0.00 0.00 0.00 4.44
7307 10773 8.856103 CAAAAATAATTAGATATCCCCAACCGT 58.144 33.333 0.00 0.00 0.00 4.83
7316 10782 2.395360 CCCCAACCGTACATGCACG 61.395 63.158 11.63 11.63 41.59 5.34
7334 10800 6.505044 TGCACGAATAGACTACTCTTGTAA 57.495 37.500 0.00 0.00 0.00 2.41
7345 10811 6.433716 AGACTACTCTTGTAACTAGTGTTCCC 59.566 42.308 0.00 0.00 37.59 3.97
7372 10838 2.957474 ACTGCAACCTACCCATGTTTT 58.043 42.857 0.00 0.00 0.00 2.43
7385 10851 2.219216 CCATGTTTTGCTGTTTTCGCTG 59.781 45.455 0.00 0.00 0.00 5.18
7434 10900 7.324354 TGATGCTTAACACGTGTCTACTATA 57.676 36.000 23.61 6.54 0.00 1.31
7477 10943 7.700656 ACACTGCTATGTCACAAAAACTTAAAC 59.299 33.333 0.00 0.00 0.00 2.01
7519 10985 4.735662 AATGAAACATGTTGCATGTTGC 57.264 36.364 28.97 21.60 37.85 4.17
7535 11001 5.062558 GCATGTTGCATGTCCTTCATAAAAC 59.937 40.000 10.31 0.00 44.26 2.43
7581 11047 4.233005 CCTCTACATCATAGATGCACACG 58.767 47.826 6.90 0.00 0.00 4.49
7582 11048 4.261783 CCTCTACATCATAGATGCACACGT 60.262 45.833 6.90 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.392354 ACATGTCCAGTTTTGCATTAGAATG 58.608 36.000 0.00 0.00 39.40 2.67
1 2 6.594788 ACATGTCCAGTTTTGCATTAGAAT 57.405 33.333 0.00 0.00 0.00 2.40
2 3 7.701539 ATACATGTCCAGTTTTGCATTAGAA 57.298 32.000 0.00 0.00 0.00 2.10
3 4 7.011016 CGTATACATGTCCAGTTTTGCATTAGA 59.989 37.037 0.00 0.00 0.00 2.10
4 5 7.011016 TCGTATACATGTCCAGTTTTGCATTAG 59.989 37.037 0.00 0.00 0.00 1.73
5 6 6.819146 TCGTATACATGTCCAGTTTTGCATTA 59.181 34.615 0.00 0.00 0.00 1.90
6 7 5.645929 TCGTATACATGTCCAGTTTTGCATT 59.354 36.000 0.00 0.00 0.00 3.56
7 8 5.182487 TCGTATACATGTCCAGTTTTGCAT 58.818 37.500 0.00 0.00 0.00 3.96
8 9 4.570930 TCGTATACATGTCCAGTTTTGCA 58.429 39.130 0.00 0.00 0.00 4.08
9 10 4.868171 TCTCGTATACATGTCCAGTTTTGC 59.132 41.667 0.00 0.00 0.00 3.68
10 11 6.330278 TCTCTCGTATACATGTCCAGTTTTG 58.670 40.000 0.00 0.00 0.00 2.44
11 12 6.525578 TCTCTCGTATACATGTCCAGTTTT 57.474 37.500 0.00 0.00 0.00 2.43
12 13 6.525578 TTCTCTCGTATACATGTCCAGTTT 57.474 37.500 0.00 0.00 0.00 2.66
13 14 6.547880 AGATTCTCTCGTATACATGTCCAGTT 59.452 38.462 0.00 0.00 0.00 3.16
14 15 6.065374 AGATTCTCTCGTATACATGTCCAGT 58.935 40.000 0.00 0.00 0.00 4.00
15 16 6.567687 AGATTCTCTCGTATACATGTCCAG 57.432 41.667 0.00 0.00 0.00 3.86
16 17 6.961360 AAGATTCTCTCGTATACATGTCCA 57.039 37.500 0.00 0.00 0.00 4.02
17 18 8.649973 AAAAAGATTCTCTCGTATACATGTCC 57.350 34.615 0.00 0.00 0.00 4.02
21 22 9.968870 GGTCTAAAAAGATTCTCTCGTATACAT 57.031 33.333 3.32 0.00 0.00 2.29
22 23 8.963725 TGGTCTAAAAAGATTCTCTCGTATACA 58.036 33.333 3.32 0.00 0.00 2.29
23 24 9.968870 ATGGTCTAAAAAGATTCTCTCGTATAC 57.031 33.333 0.00 0.00 0.00 1.47
25 26 9.319143 CAATGGTCTAAAAAGATTCTCTCGTAT 57.681 33.333 0.00 0.00 0.00 3.06
26 27 8.311836 ACAATGGTCTAAAAAGATTCTCTCGTA 58.688 33.333 0.00 0.00 0.00 3.43
27 28 7.162082 ACAATGGTCTAAAAAGATTCTCTCGT 58.838 34.615 0.00 0.00 0.00 4.18
28 29 7.602517 ACAATGGTCTAAAAAGATTCTCTCG 57.397 36.000 0.00 0.00 0.00 4.04
67 68 9.445878 CAATAGCATGTCTATATTTGGATGTCT 57.554 33.333 9.23 0.00 37.01 3.41
68 69 8.671921 CCAATAGCATGTCTATATTTGGATGTC 58.328 37.037 15.62 0.00 37.22 3.06
69 70 8.385491 TCCAATAGCATGTCTATATTTGGATGT 58.615 33.333 17.54 0.10 38.27 3.06
70 71 8.797350 TCCAATAGCATGTCTATATTTGGATG 57.203 34.615 17.54 9.26 38.27 3.51
71 72 8.829746 TCTCCAATAGCATGTCTATATTTGGAT 58.170 33.333 19.65 2.61 40.47 3.41
72 73 8.206126 TCTCCAATAGCATGTCTATATTTGGA 57.794 34.615 18.95 18.95 39.68 3.53
73 74 8.890718 CATCTCCAATAGCATGTCTATATTTGG 58.109 37.037 15.04 15.04 37.01 3.28
74 75 8.890718 CCATCTCCAATAGCATGTCTATATTTG 58.109 37.037 9.23 6.23 37.01 2.32
75 76 8.609483 ACCATCTCCAATAGCATGTCTATATTT 58.391 33.333 9.23 0.00 37.01 1.40
76 77 8.155620 ACCATCTCCAATAGCATGTCTATATT 57.844 34.615 9.23 1.14 37.01 1.28
77 78 7.622878 AGACCATCTCCAATAGCATGTCTATAT 59.377 37.037 9.23 0.00 37.01 0.86
78 79 6.956435 AGACCATCTCCAATAGCATGTCTATA 59.044 38.462 9.23 0.00 37.01 1.31
79 80 5.784390 AGACCATCTCCAATAGCATGTCTAT 59.216 40.000 0.00 0.00 39.62 1.98
80 81 5.150715 AGACCATCTCCAATAGCATGTCTA 58.849 41.667 0.00 0.00 0.00 2.59
81 82 3.972638 AGACCATCTCCAATAGCATGTCT 59.027 43.478 0.00 0.00 0.00 3.41
82 83 4.348863 AGACCATCTCCAATAGCATGTC 57.651 45.455 0.00 0.00 0.00 3.06
83 84 5.367937 ACTTAGACCATCTCCAATAGCATGT 59.632 40.000 0.00 0.00 0.00 3.21
84 85 5.862845 ACTTAGACCATCTCCAATAGCATG 58.137 41.667 0.00 0.00 0.00 4.06
85 86 7.445945 GTTACTTAGACCATCTCCAATAGCAT 58.554 38.462 0.00 0.00 0.00 3.79
86 87 6.461092 CGTTACTTAGACCATCTCCAATAGCA 60.461 42.308 0.00 0.00 0.00 3.49
87 88 5.921408 CGTTACTTAGACCATCTCCAATAGC 59.079 44.000 0.00 0.00 0.00 2.97
88 89 7.273320 TCGTTACTTAGACCATCTCCAATAG 57.727 40.000 0.00 0.00 0.00 1.73
89 90 7.649533 TTCGTTACTTAGACCATCTCCAATA 57.350 36.000 0.00 0.00 0.00 1.90
90 91 6.540438 TTCGTTACTTAGACCATCTCCAAT 57.460 37.500 0.00 0.00 0.00 3.16
91 92 5.623824 GCTTCGTTACTTAGACCATCTCCAA 60.624 44.000 0.00 0.00 0.00 3.53
92 93 4.142227 GCTTCGTTACTTAGACCATCTCCA 60.142 45.833 0.00 0.00 0.00 3.86
93 94 4.361420 GCTTCGTTACTTAGACCATCTCC 58.639 47.826 0.00 0.00 0.00 3.71
94 95 4.036352 CGCTTCGTTACTTAGACCATCTC 58.964 47.826 0.00 0.00 0.00 2.75
95 96 3.442977 ACGCTTCGTTACTTAGACCATCT 59.557 43.478 0.00 0.00 36.35 2.90
96 97 3.767278 ACGCTTCGTTACTTAGACCATC 58.233 45.455 0.00 0.00 36.35 3.51
97 98 3.863142 ACGCTTCGTTACTTAGACCAT 57.137 42.857 0.00 0.00 36.35 3.55
109 110 1.207593 GCATTGCTCAACGCTTCGT 59.792 52.632 0.16 0.00 43.97 3.85
110 111 1.512734 GGCATTGCTCAACGCTTCG 60.513 57.895 8.82 0.00 40.11 3.79
111 112 1.512734 CGGCATTGCTCAACGCTTC 60.513 57.895 8.82 0.00 40.11 3.86
112 113 1.965930 TCGGCATTGCTCAACGCTT 60.966 52.632 8.82 0.00 40.11 4.68
113 114 2.358615 TCGGCATTGCTCAACGCT 60.359 55.556 8.82 0.00 40.11 5.07
114 115 2.202349 GTCGGCATTGCTCAACGC 60.202 61.111 8.82 0.00 39.77 4.84
115 116 2.096406 CGTCGGCATTGCTCAACG 59.904 61.111 8.82 11.70 0.00 4.10
116 117 1.291877 ACTCGTCGGCATTGCTCAAC 61.292 55.000 8.82 3.87 0.00 3.18
117 118 0.602638 AACTCGTCGGCATTGCTCAA 60.603 50.000 8.82 0.00 0.00 3.02
118 119 1.005037 AACTCGTCGGCATTGCTCA 60.005 52.632 8.82 0.00 0.00 4.26
119 120 1.421485 CAACTCGTCGGCATTGCTC 59.579 57.895 8.82 0.00 0.00 4.26
120 121 2.680913 GCAACTCGTCGGCATTGCT 61.681 57.895 8.82 0.00 43.26 3.91
121 122 2.202349 GCAACTCGTCGGCATTGC 60.202 61.111 0.00 0.00 40.54 3.56
122 123 2.480555 GGCAACTCGTCGGCATTG 59.519 61.111 0.00 0.00 0.00 2.82
123 124 3.118454 CGGCAACTCGTCGGCATT 61.118 61.111 0.00 0.00 39.72 3.56
127 128 2.381665 TTTTTGCGGCAACTCGTCGG 62.382 55.000 16.15 0.00 45.03 4.79
150 151 1.197721 CTCGTCGGCATTGCTCTTTTT 59.802 47.619 8.82 0.00 0.00 1.94
151 152 0.798776 CTCGTCGGCATTGCTCTTTT 59.201 50.000 8.82 0.00 0.00 2.27
152 153 0.320771 ACTCGTCGGCATTGCTCTTT 60.321 50.000 8.82 0.00 0.00 2.52
153 154 0.320771 AACTCGTCGGCATTGCTCTT 60.321 50.000 8.82 0.00 0.00 2.85
154 155 0.320771 AAACTCGTCGGCATTGCTCT 60.321 50.000 8.82 0.00 0.00 4.09
155 156 0.095417 GAAACTCGTCGGCATTGCTC 59.905 55.000 8.82 0.00 0.00 4.26
156 157 0.320771 AGAAACTCGTCGGCATTGCT 60.321 50.000 8.82 0.00 0.00 3.91
157 158 0.095417 GAGAAACTCGTCGGCATTGC 59.905 55.000 0.00 0.00 0.00 3.56
168 169 5.277683 GGTTTTTACCCTGAACGAGAAACTC 60.278 44.000 0.00 0.00 0.00 3.01
169 170 4.577693 GGTTTTTACCCTGAACGAGAAACT 59.422 41.667 0.00 0.00 0.00 2.66
170 171 4.577693 AGGTTTTTACCCTGAACGAGAAAC 59.422 41.667 0.00 0.00 0.00 2.78
171 172 4.784177 AGGTTTTTACCCTGAACGAGAAA 58.216 39.130 0.00 0.00 0.00 2.52
172 173 4.426736 AGGTTTTTACCCTGAACGAGAA 57.573 40.909 0.00 0.00 0.00 2.87
173 174 4.426736 AAGGTTTTTACCCTGAACGAGA 57.573 40.909 0.00 0.00 30.99 4.04
174 175 5.058490 TGTAAGGTTTTTACCCTGAACGAG 58.942 41.667 0.00 0.00 30.99 4.18
175 176 5.033589 TGTAAGGTTTTTACCCTGAACGA 57.966 39.130 0.00 0.00 30.99 3.85
176 177 5.704053 AGATGTAAGGTTTTTACCCTGAACG 59.296 40.000 0.00 0.00 30.99 3.95
177 178 7.881751 AGTAGATGTAAGGTTTTTACCCTGAAC 59.118 37.037 0.00 0.00 30.99 3.18
178 179 7.881232 CAGTAGATGTAAGGTTTTTACCCTGAA 59.119 37.037 0.00 0.00 30.99 3.02
179 180 7.016858 ACAGTAGATGTAAGGTTTTTACCCTGA 59.983 37.037 0.00 0.00 41.60 3.86
180 181 7.166167 ACAGTAGATGTAAGGTTTTTACCCTG 58.834 38.462 0.00 0.00 41.60 4.45
181 182 7.325725 ACAGTAGATGTAAGGTTTTTACCCT 57.674 36.000 0.00 0.00 41.60 4.34
193 194 8.577296 GGAGCATCTTACATACAGTAGATGTAA 58.423 37.037 10.63 9.38 43.92 2.41
194 195 7.945109 AGGAGCATCTTACATACAGTAGATGTA 59.055 37.037 10.63 2.93 41.48 2.29
195 196 6.780031 AGGAGCATCTTACATACAGTAGATGT 59.220 38.462 10.63 3.78 38.80 3.06
196 197 7.089538 CAGGAGCATCTTACATACAGTAGATG 58.910 42.308 0.00 0.00 39.15 2.90
197 198 6.295011 GCAGGAGCATCTTACATACAGTAGAT 60.295 42.308 0.00 0.00 41.58 1.98
198 199 5.010112 GCAGGAGCATCTTACATACAGTAGA 59.990 44.000 0.00 0.00 41.58 2.59
199 200 5.226396 GCAGGAGCATCTTACATACAGTAG 58.774 45.833 0.00 0.00 41.58 2.57
200 201 4.039245 GGCAGGAGCATCTTACATACAGTA 59.961 45.833 0.00 0.00 44.61 2.74
201 202 3.181461 GGCAGGAGCATCTTACATACAGT 60.181 47.826 0.00 0.00 44.61 3.55
202 203 3.070734 AGGCAGGAGCATCTTACATACAG 59.929 47.826 0.00 0.00 44.61 2.74
203 204 3.041211 AGGCAGGAGCATCTTACATACA 58.959 45.455 0.00 0.00 44.61 2.29
204 205 3.760580 AGGCAGGAGCATCTTACATAC 57.239 47.619 0.00 0.00 44.61 2.39
243 244 2.954753 GAGTTGGCCGTGCACGAAG 61.955 63.158 39.10 24.46 43.02 3.79
251 252 2.048503 GCTACGTGAGTTGGCCGT 60.049 61.111 0.00 0.00 46.40 5.68
303 304 4.821589 CGCTCTTGGGAGGCGGTC 62.822 72.222 0.00 0.00 39.80 4.79
308 309 3.721706 AAGGGCGCTCTTGGGAGG 61.722 66.667 24.56 0.00 39.80 4.30
309 310 2.437359 CAAGGGCGCTCTTGGGAG 60.437 66.667 37.14 16.08 40.14 4.30
310 311 2.927856 TCAAGGGCGCTCTTGGGA 60.928 61.111 41.31 25.93 43.05 4.37
311 312 2.437359 CTCAAGGGCGCTCTTGGG 60.437 66.667 41.31 37.99 43.05 4.12
353 354 2.216750 CTTTGGGCTTGTGGCGATGG 62.217 60.000 0.00 0.00 42.94 3.51
354 355 1.213537 CTTTGGGCTTGTGGCGATG 59.786 57.895 0.00 0.00 42.94 3.84
366 367 1.086634 GCGCTGCTCTAGACTTTGGG 61.087 60.000 0.00 0.00 0.00 4.12
387 388 3.966026 GACGGCAGTCGGAACCTCG 62.966 68.421 0.00 0.00 44.45 4.63
419 421 2.048877 AACACCTTACCGGCGTCG 60.049 61.111 0.29 0.29 35.61 5.12
487 504 8.859090 ACCACAATAAAATGAGACAAAGAATCA 58.141 29.630 0.00 0.00 0.00 2.57
555 3207 1.377202 GCAGGGCTGATTCCGTTCA 60.377 57.895 0.00 0.00 0.00 3.18
574 3226 0.107703 GATGCAGATTCACCGGTCCA 60.108 55.000 2.59 0.00 0.00 4.02
856 3906 1.151810 TGATATCCTCCCTGGCCCC 60.152 63.158 0.00 0.00 35.26 5.80
1050 4106 1.378250 CCTGCTGGGGAGCTTCTTG 60.378 63.158 0.71 0.00 35.49 3.02
1146 4202 1.072965 ACACTCCTTTGCCTGGAAGAG 59.927 52.381 0.00 0.00 34.07 2.85
1199 4255 4.720902 TACCGGCGGGTCGAGACA 62.721 66.667 31.78 0.00 46.01 3.41
1295 4351 0.249489 CTTTATGGACGCCTCCTCCG 60.249 60.000 3.30 0.00 37.48 4.63
1313 4369 1.214673 TCTCATACAGCGTCCCTACCT 59.785 52.381 0.00 0.00 0.00 3.08
1374 4430 1.078143 CTGCCTTAGCCACTCCACC 60.078 63.158 0.00 0.00 38.69 4.61
1506 4562 1.180029 GCTGTGCCTGGATCACAAAT 58.820 50.000 0.00 0.00 43.02 2.32
1683 4739 3.405831 CTTCAACAGCTTCCATGTCTGA 58.594 45.455 8.03 0.00 0.00 3.27
1767 4823 5.468540 TTATGCCGATGCTACTATGAACT 57.531 39.130 0.00 0.00 38.71 3.01
2106 5162 7.444487 GGGATAACAGAAAACAGTGTCTTACTT 59.556 37.037 0.00 0.00 37.60 2.24
2167 5223 5.499139 TGTGTTCACCTTCAATTCTGAAC 57.501 39.130 0.00 0.00 41.87 3.18
2203 5259 1.371558 GTCCCCAGGTGACAGTGTC 59.628 63.158 16.68 16.68 32.91 3.67
2320 5376 1.880340 GCGAGATTCCAGAGCCACG 60.880 63.158 0.00 0.00 0.00 4.94
2434 5490 6.699366 ACCATTCAATGTTGATGTGCATAAA 58.301 32.000 0.00 0.00 37.00 1.40
2445 5501 4.261578 AGAAGCCAACCATTCAATGTTG 57.738 40.909 0.00 1.77 0.00 3.33
2521 5708 7.308450 AGCAGATAAATATGTAAGAGCCAGA 57.692 36.000 0.00 0.00 0.00 3.86
2541 5728 3.181511 TGCGGATCATAAAACGAAAGCAG 60.182 43.478 0.00 0.00 0.00 4.24
2543 5730 3.398954 TGCGGATCATAAAACGAAAGC 57.601 42.857 0.00 0.00 0.00 3.51
2560 5756 4.151258 ACAGAAACAGAACATGAATGCG 57.849 40.909 0.00 0.00 0.00 4.73
2642 5843 6.239402 CCCCAATTTCACTGTTCTTTCTTGAT 60.239 38.462 0.00 0.00 0.00 2.57
2644 5845 5.163416 ACCCCAATTTCACTGTTCTTTCTTG 60.163 40.000 0.00 0.00 0.00 3.02
2780 5982 3.062042 CAGCAAACCATTCCTTTGAAGC 58.938 45.455 0.00 0.00 33.05 3.86
3068 6270 2.919228 GTCACAAGGACACTTTCACCT 58.081 47.619 0.00 0.00 46.19 4.00
3176 6378 5.524971 TCGAAGTAACCGATGGTGATATT 57.475 39.130 0.00 0.00 35.34 1.28
3807 7009 3.576078 TGACCTGACACCTGAAACATT 57.424 42.857 0.00 0.00 0.00 2.71
3808 7010 3.576078 TTGACCTGACACCTGAAACAT 57.424 42.857 0.00 0.00 0.00 2.71
3851 7053 2.115427 TCAGTCCTGAACACTGACCAA 58.885 47.619 0.00 0.00 44.33 3.67
3878 7081 6.239396 TGGTAAAAGATTTCCCACGTGATAA 58.761 36.000 19.30 7.83 0.00 1.75
3988 7191 9.112725 CAAACAGTATATGATTCAGATTCACCA 57.887 33.333 0.00 0.00 0.00 4.17
4007 7211 2.767644 AGGGTTAAAGGCCAAACAGT 57.232 45.000 5.01 0.00 0.00 3.55
4016 7220 1.354368 TGAGCTGGGAAGGGTTAAAGG 59.646 52.381 0.00 0.00 0.00 3.11
4067 7273 2.240493 ACAGCTACAGTGTTGACCAC 57.760 50.000 9.00 0.00 44.89 4.16
4142 7375 5.878116 TGGTGAAATATACCAAGTAGTGTGC 59.122 40.000 0.00 0.00 44.79 4.57
4153 7386 8.570068 TTAAGGAAACTGTGGTGAAATATACC 57.430 34.615 0.00 0.00 42.68 2.73
4245 7478 6.980978 ACGATCACATGATACCTTAAGACAAG 59.019 38.462 3.36 0.00 34.37 3.16
4334 7567 9.159364 ACTTTAATAGGTCTAATCAACGTTTCC 57.841 33.333 0.00 0.00 0.00 3.13
4386 7619 0.675633 GGCAACCACAGCTTGAATGT 59.324 50.000 0.00 0.00 0.00 2.71
4523 7756 9.585099 TTAATACCGTATTCGCTTCTAAAAGAA 57.415 29.630 7.06 0.00 34.14 2.52
4550 7788 6.764308 TTCCTTAGAAATGCAGGATGAAAG 57.236 37.500 0.00 0.00 39.69 2.62
4560 7798 8.803579 GGAATGGCCAAATTTCCTTAGAAATGC 61.804 40.741 23.86 0.00 42.98 3.56
4584 7822 0.254107 AATAAGGGGGCTGGAAGGGA 60.254 55.000 0.00 0.00 0.00 4.20
4588 7826 3.373830 CATTTCAATAAGGGGGCTGGAA 58.626 45.455 0.00 0.00 0.00 3.53
4679 7917 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
4680 7918 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
4681 7919 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4682 7920 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
4683 7921 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4684 7922 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4685 7923 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
4686 7924 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
4687 7925 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
4688 7926 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4689 7927 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4690 7928 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4691 7929 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4692 7930 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4735 7973 9.757227 GGGATGCATCTAGATGTATATTAGTTC 57.243 37.037 29.30 18.63 42.77 3.01
4736 7974 8.709308 GGGGATGCATCTAGATGTATATTAGTT 58.291 37.037 29.30 12.28 42.77 2.24
4737 7975 8.070604 AGGGGATGCATCTAGATGTATATTAGT 58.929 37.037 29.30 12.92 42.77 2.24
4738 7976 8.489676 AGGGGATGCATCTAGATGTATATTAG 57.510 38.462 29.30 7.10 42.77 1.73
4739 7977 8.860517 AAGGGGATGCATCTAGATGTATATTA 57.139 34.615 29.30 12.99 42.77 0.98
4740 7978 7.761981 AAGGGGATGCATCTAGATGTATATT 57.238 36.000 29.30 20.04 42.77 1.28
4741 7979 7.761981 AAAGGGGATGCATCTAGATGTATAT 57.238 36.000 29.30 21.56 42.77 0.86
4742 7980 7.574021 AAAAGGGGATGCATCTAGATGTATA 57.426 36.000 29.30 18.53 42.77 1.47
4743 7981 6.460103 AAAAGGGGATGCATCTAGATGTAT 57.540 37.500 29.54 29.54 44.84 2.29
4744 7982 5.912149 AAAAGGGGATGCATCTAGATGTA 57.088 39.130 28.92 26.27 40.80 2.29
4745 7983 4.803329 AAAAGGGGATGCATCTAGATGT 57.197 40.909 28.92 14.10 40.80 3.06
4746 7984 6.944290 TGAATAAAAGGGGATGCATCTAGATG 59.056 38.462 25.64 25.64 41.60 2.90
4747 7985 7.095183 TGAATAAAAGGGGATGCATCTAGAT 57.905 36.000 25.28 0.00 0.00 1.98
4748 7986 6.514012 TGAATAAAAGGGGATGCATCTAGA 57.486 37.500 25.28 0.00 0.00 2.43
4749 7987 7.771927 AATGAATAAAAGGGGATGCATCTAG 57.228 36.000 25.28 0.00 0.00 2.43
4750 7988 8.423349 CAAAATGAATAAAAGGGGATGCATCTA 58.577 33.333 25.28 9.84 0.00 1.98
4751 7989 7.126115 TCAAAATGAATAAAAGGGGATGCATCT 59.874 33.333 25.28 7.83 0.00 2.90
4752 7990 7.274447 TCAAAATGAATAAAAGGGGATGCATC 58.726 34.615 18.81 18.81 0.00 3.91
4753 7991 7.197901 TCAAAATGAATAAAAGGGGATGCAT 57.802 32.000 0.00 0.00 0.00 3.96
4754 7992 6.617782 TCAAAATGAATAAAAGGGGATGCA 57.382 33.333 0.00 0.00 0.00 3.96
4755 7993 7.225341 GTCATCAAAATGAATAAAAGGGGATGC 59.775 37.037 0.00 0.00 43.42 3.91
4756 7994 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
4757 7995 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
4758 7996 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
4759 7997 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
4767 8005 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
4768 8006 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
4769 8007 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
4770 8008 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
4771 8009 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4772 8010 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4773 8011 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4774 8012 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4775 8013 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4776 8014 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4777 8015 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4778 8016 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4779 8017 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4780 8018 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4781 8019 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4782 8020 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4783 8021 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4784 8022 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4785 8023 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4786 8024 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4787 8025 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4788 8026 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4789 8027 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
4790 8028 1.679977 TTGTACTCCCTCCGTCCGG 60.680 63.158 0.00 0.00 0.00 5.14
4791 8029 1.509923 GTTGTACTCCCTCCGTCCG 59.490 63.158 0.00 0.00 0.00 4.79
4792 8030 1.611474 GGGTTGTACTCCCTCCGTCC 61.611 65.000 16.01 0.00 41.58 4.79
4793 8031 1.895966 GGGTTGTACTCCCTCCGTC 59.104 63.158 16.01 0.00 41.58 4.79
4794 8032 4.125239 GGGTTGTACTCCCTCCGT 57.875 61.111 16.01 0.00 41.58 4.69
4799 8037 1.602771 GCCTGAGGGTTGTACTCCC 59.397 63.158 15.67 15.67 44.90 4.30
4800 8038 0.910088 AGGCCTGAGGGTTGTACTCC 60.910 60.000 3.11 0.00 34.06 3.85
4801 8039 0.250513 CAGGCCTGAGGGTTGTACTC 59.749 60.000 29.88 0.00 35.55 2.59
4802 8040 0.178903 TCAGGCCTGAGGGTTGTACT 60.179 55.000 32.00 0.00 34.14 2.73
4803 8041 2.372852 TCAGGCCTGAGGGTTGTAC 58.627 57.895 32.00 0.00 34.14 2.90
4820 8058 0.539986 TGATAGTGAAACCCGGGCTC 59.460 55.000 24.08 18.68 37.80 4.70
4976 8215 8.091449 GCTACTCTTGCCTTGATACTATGTATT 58.909 37.037 0.00 0.00 0.00 1.89
5006 8245 5.149584 TCTCTCTAAATGACTCCTCCCAT 57.850 43.478 0.00 0.00 0.00 4.00
5059 8298 7.939784 ATACAACTGGACTTTTTCCTAATCC 57.060 36.000 0.00 0.00 46.10 3.01
5115 8393 9.250246 TGGATACATGTCATCCTTATATAACGA 57.750 33.333 23.38 0.00 46.17 3.85
5161 8439 6.150332 TCACTGGGGGAGATTAGATTGATTA 58.850 40.000 0.00 0.00 0.00 1.75
5177 8455 1.479709 AGACGAGAGAATCACTGGGG 58.520 55.000 0.00 0.00 37.82 4.96
5238 8517 2.921754 CGGAACTACCACGTTGAAGATC 59.078 50.000 0.00 0.00 38.90 2.75
5248 8527 3.921677 TGATTCAGAACGGAACTACCAC 58.078 45.455 0.00 0.00 38.90 4.16
5277 8559 3.620488 TGAAGTGAGTGTTTTCCTGCTT 58.380 40.909 0.00 0.00 0.00 3.91
5282 8564 4.761739 TCCATCATGAAGTGAGTGTTTTCC 59.238 41.667 0.00 0.00 40.92 3.13
5287 8569 3.882444 CCATCCATCATGAAGTGAGTGT 58.118 45.455 0.00 0.00 40.92 3.55
5326 8716 3.932710 TGAAAGATTGATCGTGGCTACAC 59.067 43.478 0.00 0.00 44.23 2.90
5345 8735 9.517868 TGTATTTGTATCCATGCATATGATGAA 57.482 29.630 17.05 11.09 36.36 2.57
5361 8751 7.834181 AGTATCCCAGCTTGTTTGTATTTGTAT 59.166 33.333 0.00 0.00 0.00 2.29
5475 8870 4.100963 ACACTCAGATGAACAGTTACCACA 59.899 41.667 0.00 0.00 0.00 4.17
5491 8886 5.791367 CATGTTCCTCATGTAACACTCAG 57.209 43.478 11.38 0.00 46.18 3.35
5505 8900 4.332683 TCCAGACCTACTACATGTTCCT 57.667 45.455 2.30 0.00 0.00 3.36
5521 8916 3.583228 TGGTTCCAGAAGTAGTTCCAGA 58.417 45.455 6.68 1.57 32.48 3.86
5525 8920 9.668497 ATTATTAGTTGGTTCCAGAAGTAGTTC 57.332 33.333 1.75 1.75 0.00 3.01
5530 8925 7.690256 AGACATTATTAGTTGGTTCCAGAAGT 58.310 34.615 0.00 0.00 0.00 3.01
5634 9031 2.867109 AAGGTACAGCTTGAGTGCAT 57.133 45.000 0.00 0.00 34.99 3.96
5645 9096 9.265901 CAAGTATCCTGAAATCATAAGGTACAG 57.734 37.037 0.00 0.00 32.59 2.74
5717 9168 5.563751 CACACAATCAACGTTTAGAATTCCG 59.436 40.000 0.00 0.86 0.00 4.30
5952 9407 3.005684 GCCATGTTTGACCAGTGAATGAA 59.994 43.478 0.00 0.00 0.00 2.57
5968 9423 2.718563 CGTAAAAAGGTAGGGCCATGT 58.281 47.619 6.18 0.00 40.61 3.21
5979 9434 6.918022 AGTTCAAAAATCTGAGCGTAAAAAGG 59.082 34.615 0.00 0.00 32.30 3.11
5985 9440 7.485418 TTGTAAGTTCAAAAATCTGAGCGTA 57.515 32.000 0.00 0.00 32.30 4.42
6045 9500 2.298729 GGAGACTGGATGGCTATCTCAC 59.701 54.545 10.15 0.00 38.03 3.51
6064 9519 4.365514 TTGAACTTGAGCAATGTAGGGA 57.634 40.909 0.00 0.00 0.00 4.20
6187 9642 0.673644 ACCGTGCAGTGCTTACCATC 60.674 55.000 17.60 0.00 0.00 3.51
6222 9677 8.250332 GTGTTGTATTTGGGTGACATATTCATT 58.750 33.333 0.00 0.00 36.32 2.57
6571 10026 2.747855 GGCTGGCTGAAACCGAGG 60.748 66.667 0.00 0.00 0.00 4.63
6577 10032 0.250901 GAAGAGTGGGCTGGCTGAAA 60.251 55.000 0.00 0.00 0.00 2.69
6586 10041 2.549778 GCTGATAGATGGAAGAGTGGGC 60.550 54.545 0.00 0.00 0.00 5.36
6595 10050 1.270826 GTGCGCTAGCTGATAGATGGA 59.729 52.381 13.93 0.00 45.42 3.41
6598 10053 1.000283 GGTGTGCGCTAGCTGATAGAT 60.000 52.381 13.93 0.00 45.42 1.98
6614 10069 2.299013 TCAAGATAGTGAACTGCGGTGT 59.701 45.455 0.00 0.00 0.00 4.16
6629 10084 6.208988 GCATATGAATGATGCCATCAAGAT 57.791 37.500 12.08 6.58 43.24 2.40
6683 10142 9.655769 TTTCGTACGACTGTATATACATCTTTC 57.344 33.333 19.36 9.22 35.36 2.62
6686 10145 8.599055 TCTTTCGTACGACTGTATATACATCT 57.401 34.615 19.36 4.63 35.36 2.90
6704 10163 2.365617 TCTCAGCCTTCAGTTCTTTCGT 59.634 45.455 0.00 0.00 0.00 3.85
6710 10169 6.533367 CACTATAGTTTCTCAGCCTTCAGTTC 59.467 42.308 1.56 0.00 0.00 3.01
6733 10192 2.103042 GCACGTCTGAGATGGGCAC 61.103 63.158 23.16 0.00 46.17 5.01
6739 10198 2.968737 AGACAGGCACGTCTGAGAT 58.031 52.632 10.93 0.00 44.59 2.75
6788 10247 7.326454 CACCAGTTTCTCTTCATATCTTCTCA 58.674 38.462 0.00 0.00 0.00 3.27
6808 10267 3.801698 CTCTTCCATGTGTATCCACCAG 58.198 50.000 0.00 0.00 41.09 4.00
6854 10313 4.568956 TGACACATGTGGTAAGTCATCTG 58.431 43.478 28.64 0.10 34.59 2.90
6869 10328 0.250684 TGGCGAACCACATGACACAT 60.251 50.000 0.00 0.00 42.67 3.21
6874 10333 0.908910 ATACCTGGCGAACCACATGA 59.091 50.000 0.00 0.00 42.67 3.07
6892 10351 3.319972 GCCATGCTTCATATCAACCACAT 59.680 43.478 0.00 0.00 0.00 3.21
7102 10564 9.743057 CTTGGTATTGTGACATTTAACTTCAAA 57.257 29.630 0.00 0.00 0.00 2.69
7104 10566 8.458573 ACTTGGTATTGTGACATTTAACTTCA 57.541 30.769 0.00 0.00 0.00 3.02
7116 10578 4.512198 CACACCGTTAACTTGGTATTGTGA 59.488 41.667 12.52 0.00 36.50 3.58
7132 10594 3.326880 AGGGATTAAGAGAAACACACCGT 59.673 43.478 0.00 0.00 0.00 4.83
7133 10595 3.684788 CAGGGATTAAGAGAAACACACCG 59.315 47.826 0.00 0.00 0.00 4.94
7138 10600 6.448369 TCTTTCCAGGGATTAAGAGAAACA 57.552 37.500 0.00 0.00 0.00 2.83
7169 10631 1.940613 AGAAAGACACGCACCTGTTTC 59.059 47.619 0.00 0.00 0.00 2.78
7182 10648 4.145052 ACCATGACAAGGGAAAGAAAGAC 58.855 43.478 1.13 0.00 0.00 3.01
7197 10663 2.297701 ACACACTCCAACAACCATGAC 58.702 47.619 0.00 0.00 0.00 3.06
7244 10710 2.394708 GACATGACCATACGACATCCG 58.605 52.381 0.00 0.00 45.44 4.18
7250 10716 4.166246 AGAGTAGGACATGACCATACGA 57.834 45.455 16.63 0.00 0.00 3.43
7256 10722 4.566987 ACGAAAAAGAGTAGGACATGACC 58.433 43.478 6.05 6.05 0.00 4.02
7257 10723 5.288952 GCTACGAAAAAGAGTAGGACATGAC 59.711 44.000 0.00 0.00 40.32 3.06
7293 10759 2.224426 TGCATGTACGGTTGGGGATATC 60.224 50.000 0.00 0.00 0.00 1.63
7294 10760 1.771854 TGCATGTACGGTTGGGGATAT 59.228 47.619 0.00 0.00 0.00 1.63
7295 10761 1.134340 GTGCATGTACGGTTGGGGATA 60.134 52.381 0.00 0.00 0.00 2.59
7296 10762 0.393808 GTGCATGTACGGTTGGGGAT 60.394 55.000 0.00 0.00 0.00 3.85
7297 10763 1.003112 GTGCATGTACGGTTGGGGA 60.003 57.895 0.00 0.00 0.00 4.81
7298 10764 2.395360 CGTGCATGTACGGTTGGGG 61.395 63.158 26.18 0.00 40.22 4.96
7299 10765 0.951525 TTCGTGCATGTACGGTTGGG 60.952 55.000 31.35 7.16 43.85 4.12
7300 10766 1.083489 ATTCGTGCATGTACGGTTGG 58.917 50.000 31.35 7.85 43.85 3.77
7302 10768 3.119245 AGTCTATTCGTGCATGTACGGTT 60.119 43.478 31.35 21.97 43.85 4.44
7303 10769 2.426024 AGTCTATTCGTGCATGTACGGT 59.574 45.455 31.35 23.06 43.85 4.83
7305 10771 4.845387 AGTAGTCTATTCGTGCATGTACG 58.155 43.478 27.63 27.63 44.98 3.67
7306 10772 6.062434 AGAGTAGTCTATTCGTGCATGTAC 57.938 41.667 5.68 3.51 0.00 2.90
7307 10773 6.095021 ACAAGAGTAGTCTATTCGTGCATGTA 59.905 38.462 15.12 0.00 30.45 2.29
7334 10800 3.619979 GCAGTTGCATAGGGAACACTAGT 60.620 47.826 14.25 0.00 46.62 2.57
7365 10831 2.859538 ACAGCGAAAACAGCAAAACATG 59.140 40.909 0.00 0.00 37.01 3.21
7372 10838 1.882912 ATCAGACAGCGAAAACAGCA 58.117 45.000 0.00 0.00 37.01 4.41
7385 10851 5.964758 TGGTGCCAATTTCAATAATCAGAC 58.035 37.500 0.00 0.00 0.00 3.51
7434 10900 3.984633 CAGTGTGAAAAACGTTTTGTGGT 59.015 39.130 25.83 11.07 0.00 4.16
7512 10978 6.157904 TGTTTTATGAAGGACATGCAACATG 58.842 36.000 6.03 6.03 37.34 3.21
7517 10983 6.403866 AGTTTGTTTTATGAAGGACATGCA 57.596 33.333 0.00 0.00 39.77 3.96
7518 10984 6.146021 CCAAGTTTGTTTTATGAAGGACATGC 59.854 38.462 0.00 0.00 39.77 4.06
7519 10985 7.432869 TCCAAGTTTGTTTTATGAAGGACATG 58.567 34.615 0.00 0.00 39.77 3.21
7520 10986 7.595819 TCCAAGTTTGTTTTATGAAGGACAT 57.404 32.000 0.00 0.00 42.39 3.06
7522 10988 8.887036 ATTTCCAAGTTTGTTTTATGAAGGAC 57.113 30.769 0.00 0.00 0.00 3.85
7535 11001 5.754890 GCCAGGCAATATATTTCCAAGTTTG 59.245 40.000 15.36 5.41 0.00 2.93
7581 11047 5.567534 CAGACGTTGTAATAAACATGGCAAC 59.432 40.000 0.00 0.00 38.10 4.17
7582 11048 5.239744 ACAGACGTTGTAATAAACATGGCAA 59.760 36.000 0.00 0.00 38.56 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.