Multiple sequence alignment - TraesCS6A01G271300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G271300 chr6A 100.000 3949 0 0 1 3949 498005924 498009872 0.000000e+00 7293
1 TraesCS6A01G271300 chr6A 88.166 169 20 0 3764 3932 498011470 498011302 6.690000e-48 202
2 TraesCS6A01G271300 chr6B 89.270 3700 160 98 125 3744 536002629 536006171 0.000000e+00 4414
3 TraesCS6A01G271300 chr6D 93.677 2151 61 30 819 2949 346098579 346100674 0.000000e+00 3149
4 TraesCS6A01G271300 chr6D 91.889 826 37 12 2950 3764 346100703 346101509 0.000000e+00 1127
5 TraesCS6A01G271300 chr6D 91.176 408 25 5 125 528 346097901 346098301 9.650000e-151 544
6 TraesCS6A01G271300 chr6D 92.797 236 7 7 533 766 346098336 346098563 2.270000e-87 333
7 TraesCS6A01G271300 chr1A 97.354 189 5 0 3761 3949 516588871 516588683 4.920000e-84 322
8 TraesCS6A01G271300 chr1A 94.574 129 7 0 1 129 132482496 132482368 2.410000e-47 200
9 TraesCS6A01G271300 chr1A 94.444 126 7 0 1 126 558036562 558036437 1.120000e-45 195
10 TraesCS6A01G271300 chr2B 96.392 194 6 1 3756 3949 162518581 162518773 6.370000e-83 318
11 TraesCS6A01G271300 chr2B 92.806 139 8 2 1 139 78102494 78102630 2.410000e-47 200
12 TraesCS6A01G271300 chrUn 91.304 184 16 0 3765 3948 27335789 27335972 6.550000e-63 252
13 TraesCS6A01G271300 chr3A 90.270 185 18 0 3764 3948 707353373 707353189 3.940000e-60 243
14 TraesCS6A01G271300 chr3A 86.413 184 21 3 3761 3943 648496483 648496303 8.660000e-47 198
15 TraesCS6A01G271300 chr7A 94.574 129 7 0 1 129 215187797 215187669 2.410000e-47 200
16 TraesCS6A01G271300 chr7A 95.238 126 6 0 1 126 674113520 674113645 2.410000e-47 200
17 TraesCS6A01G271300 chr4A 94.574 129 7 0 1 129 17247916 17247788 2.410000e-47 200
18 TraesCS6A01G271300 chr5A 93.939 132 7 1 1 132 1838768 1838638 8.660000e-47 198
19 TraesCS6A01G271300 chr5D 85.638 188 26 1 3757 3944 565740475 565740661 3.110000e-46 196
20 TraesCS6A01G271300 chr2D 92.593 135 10 0 1 135 366061251 366061117 1.120000e-45 195
21 TraesCS6A01G271300 chr2D 93.798 129 8 0 1 129 529693164 529693292 1.120000e-45 195
22 TraesCS6A01G271300 chr5B 85.185 189 27 1 3761 3949 380957353 380957540 4.030000e-45 193
23 TraesCS6A01G271300 chr2A 86.188 181 21 4 3759 3937 14927982 14928160 4.030000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G271300 chr6A 498005924 498009872 3948 False 7293.00 7293 100.00000 1 3949 1 chr6A.!!$F1 3948
1 TraesCS6A01G271300 chr6B 536002629 536006171 3542 False 4414.00 4414 89.27000 125 3744 1 chr6B.!!$F1 3619
2 TraesCS6A01G271300 chr6D 346097901 346101509 3608 False 1288.25 3149 92.38475 125 3764 4 chr6D.!!$F1 3639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.107654 CAGGCCTAAAGACGGGAAGG 60.108 60.0 3.98 0.00 0.00 3.46 F
338 343 0.110373 AAGCGTAAAAAGAAGCGGCG 60.110 50.0 0.51 0.51 34.34 6.46 F
920 963 0.178935 CCCATCTCCTCTCCTCTCCC 60.179 65.0 0.00 0.00 0.00 4.30 F
2081 2128 0.037975 ACCGTAAGTCGCCGTCATTT 60.038 50.0 0.00 0.00 38.35 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1280 0.035439 AGATGGGCCCGTACTTGTTG 60.035 55.0 19.13 0.00 0.00 3.33 R
2080 2127 0.038166 GGGTCAGCTGGGTTCATGAA 59.962 55.0 15.13 3.38 0.00 2.57 R
2473 2528 0.250338 AGGTGAGTTGCGAGTTTCCC 60.250 55.0 0.00 0.00 0.00 3.97 R
3369 3472 0.034616 GCCTGTCAGTCTGCTGTCTT 59.965 55.0 0.00 0.00 43.05 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.356882 TCAACCAAATGACATCTCGTTTC 57.643 39.130 0.00 0.00 33.97 2.78
30 31 4.215399 TCAACCAAATGACATCTCGTTTCC 59.785 41.667 0.00 0.00 33.97 3.13
31 32 4.021102 ACCAAATGACATCTCGTTTCCT 57.979 40.909 0.00 0.00 33.97 3.36
32 33 5.160607 ACCAAATGACATCTCGTTTCCTA 57.839 39.130 0.00 0.00 33.97 2.94
33 34 5.745227 ACCAAATGACATCTCGTTTCCTAT 58.255 37.500 0.00 0.00 33.97 2.57
34 35 6.180472 ACCAAATGACATCTCGTTTCCTATT 58.820 36.000 0.00 0.00 33.97 1.73
35 36 6.659242 ACCAAATGACATCTCGTTTCCTATTT 59.341 34.615 0.00 0.00 33.97 1.40
36 37 7.148239 ACCAAATGACATCTCGTTTCCTATTTC 60.148 37.037 0.00 0.00 33.97 2.17
37 38 7.066284 CCAAATGACATCTCGTTTCCTATTTCT 59.934 37.037 0.00 0.00 33.97 2.52
38 39 9.098355 CAAATGACATCTCGTTTCCTATTTCTA 57.902 33.333 0.00 0.00 33.97 2.10
39 40 9.838339 AAATGACATCTCGTTTCCTATTTCTAT 57.162 29.630 0.00 0.00 30.98 1.98
40 41 9.838339 AATGACATCTCGTTTCCTATTTCTATT 57.162 29.630 0.00 0.00 0.00 1.73
41 42 8.873215 TGACATCTCGTTTCCTATTTCTATTC 57.127 34.615 0.00 0.00 0.00 1.75
42 43 8.474831 TGACATCTCGTTTCCTATTTCTATTCA 58.525 33.333 0.00 0.00 0.00 2.57
43 44 9.482627 GACATCTCGTTTCCTATTTCTATTCAT 57.517 33.333 0.00 0.00 0.00 2.57
62 63 9.531942 CTATTCATAAGATCTGAGATACATGCC 57.468 37.037 0.00 0.00 0.00 4.40
63 64 6.923199 TCATAAGATCTGAGATACATGCCA 57.077 37.500 0.00 0.00 0.00 4.92
64 65 7.492077 TCATAAGATCTGAGATACATGCCAT 57.508 36.000 0.00 0.00 0.00 4.40
65 66 7.554211 TCATAAGATCTGAGATACATGCCATC 58.446 38.462 0.00 0.00 0.00 3.51
66 67 7.399478 TCATAAGATCTGAGATACATGCCATCT 59.601 37.037 9.57 9.57 35.43 2.90
67 68 5.664294 AGATCTGAGATACATGCCATCTC 57.336 43.478 22.40 22.40 45.76 2.75
73 74 5.876612 GAGATACATGCCATCTCATTTCC 57.123 43.478 23.49 5.23 45.17 3.13
74 75 5.558818 GAGATACATGCCATCTCATTTCCT 58.441 41.667 23.49 0.00 45.17 3.36
75 76 6.692849 AGATACATGCCATCTCATTTCCTA 57.307 37.500 4.89 0.00 0.00 2.94
76 77 6.471146 AGATACATGCCATCTCATTTCCTAC 58.529 40.000 4.89 0.00 0.00 3.18
77 78 4.508551 ACATGCCATCTCATTTCCTACA 57.491 40.909 0.00 0.00 0.00 2.74
78 79 4.858850 ACATGCCATCTCATTTCCTACAA 58.141 39.130 0.00 0.00 0.00 2.41
79 80 5.263599 ACATGCCATCTCATTTCCTACAAA 58.736 37.500 0.00 0.00 0.00 2.83
80 81 5.716228 ACATGCCATCTCATTTCCTACAAAA 59.284 36.000 0.00 0.00 0.00 2.44
81 82 6.381994 ACATGCCATCTCATTTCCTACAAAAT 59.618 34.615 0.00 0.00 0.00 1.82
82 83 6.855763 TGCCATCTCATTTCCTACAAAATT 57.144 33.333 0.00 0.00 0.00 1.82
83 84 6.866480 TGCCATCTCATTTCCTACAAAATTC 58.134 36.000 0.00 0.00 0.00 2.17
84 85 6.664816 TGCCATCTCATTTCCTACAAAATTCT 59.335 34.615 0.00 0.00 0.00 2.40
85 86 7.178983 TGCCATCTCATTTCCTACAAAATTCTT 59.821 33.333 0.00 0.00 0.00 2.52
86 87 8.686334 GCCATCTCATTTCCTACAAAATTCTTA 58.314 33.333 0.00 0.00 0.00 2.10
122 123 8.525290 AATCCTATTCTATGAACCAAAACAGG 57.475 34.615 0.00 0.00 0.00 4.00
123 124 5.885912 TCCTATTCTATGAACCAAAACAGGC 59.114 40.000 0.00 0.00 0.00 4.85
135 136 1.061546 AAACAGGCCTAAAGACGGGA 58.938 50.000 3.98 0.00 0.00 5.14
138 139 0.107654 CAGGCCTAAAGACGGGAAGG 60.108 60.000 3.98 0.00 0.00 3.46
142 143 0.739813 CCTAAAGACGGGAAGGTGCG 60.740 60.000 0.00 0.00 0.00 5.34
180 181 1.374252 CCCTGACGACGGACCAAAG 60.374 63.158 0.00 0.00 0.00 2.77
182 183 1.374252 CTGACGACGGACCAAAGGG 60.374 63.158 0.00 0.00 41.29 3.95
209 210 0.320421 AACACCTGTCATTCCGACCG 60.320 55.000 0.00 0.00 44.71 4.79
243 244 0.634731 CGTTTTCCGCATGCATTTCG 59.365 50.000 19.57 10.17 0.00 3.46
245 246 1.913403 GTTTTCCGCATGCATTTCGAG 59.087 47.619 19.57 0.00 0.00 4.04
248 249 2.763273 CCGCATGCATTTCGAGGCA 61.763 57.895 19.57 10.29 45.23 4.75
323 324 3.921021 AGAATGACTCACGTTAGAAAGCG 59.079 43.478 3.23 0.00 0.00 4.68
328 333 5.042593 TGACTCACGTTAGAAAGCGTAAAA 58.957 37.500 3.23 0.00 39.48 1.52
329 334 5.519566 TGACTCACGTTAGAAAGCGTAAAAA 59.480 36.000 3.23 0.00 39.48 1.94
334 339 5.336209 CACGTTAGAAAGCGTAAAAAGAAGC 59.664 40.000 0.00 0.00 39.48 3.86
338 343 0.110373 AAGCGTAAAAAGAAGCGGCG 60.110 50.000 0.51 0.51 34.34 6.46
340 345 1.495951 CGTAAAAAGAAGCGGCGCT 59.504 52.632 31.35 31.35 42.56 5.92
341 346 0.789383 CGTAAAAAGAAGCGGCGCTG 60.789 55.000 37.09 15.68 39.62 5.18
349 354 2.543687 GAAGCGGCGCTGTCAGTAGA 62.544 60.000 37.09 0.00 39.62 2.59
350 355 1.949847 AAGCGGCGCTGTCAGTAGAT 61.950 55.000 37.09 13.76 39.62 1.98
354 359 2.852748 CGGCGCTGTCAGTAGATATAC 58.147 52.381 8.45 0.00 0.00 1.47
377 382 3.686726 GCAGGCCAATAGAAATATCTCGG 59.313 47.826 5.01 0.00 37.10 4.63
461 467 5.418676 GCTGGGATATTATCAGAGAAGAGC 58.581 45.833 6.04 0.00 0.00 4.09
470 476 4.717233 ATCAGAGAAGAGCACTGTGTAG 57.283 45.455 9.86 0.00 36.68 2.74
471 477 3.491342 TCAGAGAAGAGCACTGTGTAGT 58.509 45.455 9.86 0.00 36.68 2.73
473 479 4.456222 TCAGAGAAGAGCACTGTGTAGTAC 59.544 45.833 9.86 0.00 36.68 2.73
476 482 5.478679 AGAGAAGAGCACTGTGTAGTACAAT 59.521 40.000 4.11 0.00 39.20 2.71
477 483 6.659668 AGAGAAGAGCACTGTGTAGTACAATA 59.340 38.462 4.11 0.00 39.20 1.90
478 484 7.176865 AGAGAAGAGCACTGTGTAGTACAATAA 59.823 37.037 4.11 0.00 39.20 1.40
479 485 7.316640 AGAAGAGCACTGTGTAGTACAATAAG 58.683 38.462 4.11 6.01 39.20 1.73
523 529 3.514645 GCCAAAACACAGCAGGATTATG 58.485 45.455 0.00 0.00 0.00 1.90
528 534 1.133976 ACACAGCAGGATTATGGGAGC 60.134 52.381 0.00 0.00 0.00 4.70
529 535 1.134007 CACAGCAGGATTATGGGAGCA 60.134 52.381 0.00 0.00 0.00 4.26
530 536 1.779092 ACAGCAGGATTATGGGAGCAT 59.221 47.619 0.00 0.00 0.00 3.79
531 537 2.981784 ACAGCAGGATTATGGGAGCATA 59.018 45.455 0.00 0.00 0.00 3.14
588 629 1.066587 GGGCTTCGATCTCCGTCTG 59.933 63.158 0.00 0.00 39.75 3.51
627 668 1.078567 GGACTGCTCCTTCCTGCTG 60.079 63.158 0.00 0.00 33.07 4.41
628 669 1.744741 GACTGCTCCTTCCTGCTGC 60.745 63.158 0.00 0.00 0.00 5.25
629 670 2.182732 GACTGCTCCTTCCTGCTGCT 62.183 60.000 0.00 0.00 0.00 4.24
670 713 3.944055 TGATTAGATTAGGCTCGCTCC 57.056 47.619 0.00 0.00 0.00 4.70
708 751 5.681105 CCGATTAAACTGTGCAATAATTCGG 59.319 40.000 0.00 0.00 0.00 4.30
766 809 3.181504 CGCGTGGTTAAGATTTTTAGGGG 60.182 47.826 0.00 0.00 0.00 4.79
803 846 4.767255 GGCAGTGCCGGAGACCAG 62.767 72.222 20.55 0.00 39.62 4.00
811 854 4.838486 CGGAGACCAGCGACGCTC 62.838 72.222 21.67 9.62 36.40 5.03
812 855 4.838486 GGAGACCAGCGACGCTCG 62.838 72.222 21.67 17.11 43.89 5.03
900 943 4.202574 CAGCCACCACCACCACCA 62.203 66.667 0.00 0.00 0.00 4.17
901 944 4.204028 AGCCACCACCACCACCAC 62.204 66.667 0.00 0.00 0.00 4.16
903 946 4.596585 CCACCACCACCACCACCC 62.597 72.222 0.00 0.00 0.00 4.61
904 947 3.814906 CACCACCACCACCACCCA 61.815 66.667 0.00 0.00 0.00 4.51
905 948 2.780924 ACCACCACCACCACCCAT 60.781 61.111 0.00 0.00 0.00 4.00
906 949 2.035626 CCACCACCACCACCCATC 59.964 66.667 0.00 0.00 0.00 3.51
907 950 2.538141 CCACCACCACCACCCATCT 61.538 63.158 0.00 0.00 0.00 2.90
908 951 1.002134 CACCACCACCACCCATCTC 60.002 63.158 0.00 0.00 0.00 2.75
909 952 2.231380 ACCACCACCACCCATCTCC 61.231 63.158 0.00 0.00 0.00 3.71
910 953 1.925455 CCACCACCACCCATCTCCT 60.925 63.158 0.00 0.00 0.00 3.69
911 954 1.604378 CACCACCACCCATCTCCTC 59.396 63.158 0.00 0.00 0.00 3.71
912 955 0.911525 CACCACCACCCATCTCCTCT 60.912 60.000 0.00 0.00 0.00 3.69
913 956 0.618968 ACCACCACCCATCTCCTCTC 60.619 60.000 0.00 0.00 0.00 3.20
914 957 1.341156 CCACCACCCATCTCCTCTCC 61.341 65.000 0.00 0.00 0.00 3.71
920 963 0.178935 CCCATCTCCTCTCCTCTCCC 60.179 65.000 0.00 0.00 0.00 4.30
922 965 0.178935 CATCTCCTCTCCTCTCCCCC 60.179 65.000 0.00 0.00 0.00 5.40
939 986 1.758906 CCCCTCGTCTTCCTCCTCC 60.759 68.421 0.00 0.00 0.00 4.30
956 1003 3.839432 CGACTCCTTCGGGGCTCC 61.839 72.222 0.00 0.00 44.60 4.70
957 1004 2.364448 GACTCCTTCGGGGCTCCT 60.364 66.667 0.00 0.00 35.37 3.69
971 1018 1.307097 GCTCCTATCCTTTGCAGCTG 58.693 55.000 10.11 10.11 0.00 4.24
982 1029 3.112709 GCAGCTGACGGAACCGAC 61.113 66.667 20.43 14.04 42.83 4.79
1012 1059 0.453282 CGTTGACATGGCTGCTTTCG 60.453 55.000 0.00 0.00 0.00 3.46
1014 1061 1.001378 GTTGACATGGCTGCTTTCGTT 60.001 47.619 0.00 0.00 0.00 3.85
1073 1120 4.735132 CGTCCGCGCCAGGAAGAA 62.735 66.667 10.87 0.00 42.77 2.52
1074 1121 2.815647 GTCCGCGCCAGGAAGAAG 60.816 66.667 5.54 0.00 42.77 2.85
1545 1592 1.605710 CTGCAAGTCAACACCTTCCAG 59.394 52.381 0.00 0.00 0.00 3.86
1581 1628 3.007398 TGAGTGCTTCTTCTTCTTCCTCC 59.993 47.826 0.00 0.00 0.00 4.30
1582 1629 3.247162 AGTGCTTCTTCTTCTTCCTCCT 58.753 45.455 0.00 0.00 0.00 3.69
1583 1630 3.260632 AGTGCTTCTTCTTCTTCCTCCTC 59.739 47.826 0.00 0.00 0.00 3.71
1594 1641 1.492599 CTTCCTCCTCTTCCATTCCCC 59.507 57.143 0.00 0.00 0.00 4.81
1595 1642 0.691078 TCCTCCTCTTCCATTCCCCG 60.691 60.000 0.00 0.00 0.00 5.73
1628 1675 2.481795 GCTTTCCTCTGCTCTGCTCTAG 60.482 54.545 0.00 0.00 0.00 2.43
1661 1708 3.698382 GCTCGAGGCTGATCGTTG 58.302 61.111 15.58 0.00 43.20 4.10
1671 1718 1.333619 GCTGATCGTTGTGTTGGTGTT 59.666 47.619 0.00 0.00 0.00 3.32
1672 1719 2.546368 GCTGATCGTTGTGTTGGTGTTA 59.454 45.455 0.00 0.00 0.00 2.41
2075 2122 2.872925 CGTCACCGTAAGTCGCCG 60.873 66.667 0.00 0.00 38.35 6.46
2079 2126 1.153901 CACCGTAAGTCGCCGTCAT 60.154 57.895 0.00 0.00 38.35 3.06
2080 2127 0.734942 CACCGTAAGTCGCCGTCATT 60.735 55.000 0.00 0.00 38.35 2.57
2081 2128 0.037975 ACCGTAAGTCGCCGTCATTT 60.038 50.000 0.00 0.00 38.35 2.32
2082 2129 0.643820 CCGTAAGTCGCCGTCATTTC 59.356 55.000 0.00 0.00 38.35 2.17
2083 2130 1.342555 CGTAAGTCGCCGTCATTTCA 58.657 50.000 0.00 0.00 0.00 2.69
2084 2131 1.924524 CGTAAGTCGCCGTCATTTCAT 59.075 47.619 0.00 0.00 0.00 2.57
2085 2132 2.285026 CGTAAGTCGCCGTCATTTCATG 60.285 50.000 0.00 0.00 0.00 3.07
2086 2133 2.093306 AAGTCGCCGTCATTTCATGA 57.907 45.000 0.00 0.00 36.84 3.07
2087 2134 2.093306 AGTCGCCGTCATTTCATGAA 57.907 45.000 3.38 3.38 41.69 2.57
2088 2135 1.732259 AGTCGCCGTCATTTCATGAAC 59.268 47.619 7.89 0.00 41.69 3.18
2103 2150 2.606519 AACCCAGCTGACCCGCTA 60.607 61.111 17.39 0.00 38.41 4.26
2106 2153 4.537433 CCAGCTGACCCGCTAGGC 62.537 72.222 17.39 0.00 38.41 3.93
2136 2183 2.660258 AAAGCAGCGACTGACCCGTT 62.660 55.000 10.46 0.00 32.44 4.44
2141 2188 1.080093 GCGACTGACCCGTTCATCA 60.080 57.895 0.00 0.00 32.17 3.07
2148 2195 4.442706 ACTGACCCGTTCATCATACAATC 58.557 43.478 0.00 0.00 32.17 2.67
2338 2385 0.391395 CAAGGTGAGCAGAGCAGAGG 60.391 60.000 0.00 0.00 0.00 3.69
2361 2416 2.214347 TCAATCGCTTTGGTCGTTTGA 58.786 42.857 5.21 5.21 40.86 2.69
2390 2445 4.385405 GCTGTGCTCCGCTGTCCT 62.385 66.667 0.00 0.00 0.00 3.85
2399 2454 2.202676 CGCTGTCCTTCTCGGAGC 60.203 66.667 0.00 0.00 44.20 4.70
2473 2528 0.802607 GGACGCGCTCCTAACTCAAG 60.803 60.000 5.73 0.00 35.89 3.02
2637 2709 2.057316 CGATTCGAGGTCAGCATCATC 58.943 52.381 0.00 0.00 0.00 2.92
2638 2710 2.544486 CGATTCGAGGTCAGCATCATCA 60.544 50.000 0.00 0.00 0.00 3.07
2639 2711 3.661944 GATTCGAGGTCAGCATCATCAT 58.338 45.455 0.00 0.00 0.00 2.45
2640 2712 3.548745 TTCGAGGTCAGCATCATCATT 57.451 42.857 0.00 0.00 0.00 2.57
2665 2737 1.670380 GCCCTCTGTTTGACGAGTCTC 60.670 57.143 4.78 0.00 0.00 3.36
2666 2738 1.889829 CCCTCTGTTTGACGAGTCTCT 59.110 52.381 4.78 0.00 0.00 3.10
2668 2740 3.570559 CCTCTGTTTGACGAGTCTCTTC 58.429 50.000 4.78 0.00 0.00 2.87
2669 2741 3.254657 CCTCTGTTTGACGAGTCTCTTCT 59.745 47.826 7.76 0.00 0.00 2.85
2670 2742 4.261825 CCTCTGTTTGACGAGTCTCTTCTT 60.262 45.833 7.76 0.00 0.00 2.52
2671 2743 4.861210 TCTGTTTGACGAGTCTCTTCTTC 58.139 43.478 7.76 0.26 0.00 2.87
2672 2744 3.629058 TGTTTGACGAGTCTCTTCTTCG 58.371 45.455 7.76 0.00 0.00 3.79
2673 2745 3.314357 TGTTTGACGAGTCTCTTCTTCGA 59.686 43.478 7.76 0.00 0.00 3.71
2674 2746 4.023107 TGTTTGACGAGTCTCTTCTTCGAT 60.023 41.667 7.76 0.00 0.00 3.59
2996 3099 3.025176 GCACGATAGAGGCGACGC 61.025 66.667 12.43 12.43 41.38 5.19
3021 3124 3.260483 CATGCGAGCGAGCTGGAC 61.260 66.667 11.22 3.43 38.13 4.02
3068 3171 2.047179 GTCGGAGGGGACACTTGC 60.047 66.667 0.00 0.00 36.91 4.01
3146 3249 2.033194 CGGGCCGTCAAAAGTCCTC 61.033 63.158 19.97 0.00 0.00 3.71
3160 3263 6.931281 TCAAAAGTCCTCTGTACAGATTCTTG 59.069 38.462 25.35 19.67 36.76 3.02
3207 3310 2.415512 GACGAGACCAAGAAAAATCCCG 59.584 50.000 0.00 0.00 0.00 5.14
3213 3316 2.558359 ACCAAGAAAAATCCCGCTCTTG 59.442 45.455 4.11 4.11 42.83 3.02
3277 3380 2.644992 CACAAAGAAGTGGCGCCC 59.355 61.111 26.77 15.80 35.88 6.13
3294 3397 1.269361 GCCCAACTGTAAAACCAACCG 60.269 52.381 0.00 0.00 0.00 4.44
3355 3458 6.585695 TGGCAACACCTATACTAGTATAGC 57.414 41.667 31.95 23.79 42.90 2.97
3367 3470 5.915744 ACTAGTATAGCAGGAGGAGAGAA 57.084 43.478 0.00 0.00 44.39 2.87
3368 3471 5.876357 ACTAGTATAGCAGGAGGAGAGAAG 58.124 45.833 0.00 0.00 44.39 2.85
3369 3472 5.609284 ACTAGTATAGCAGGAGGAGAGAAGA 59.391 44.000 0.00 0.00 44.39 2.87
3452 3563 1.270839 GGCAGCTAGGCCGAATAATCA 60.271 52.381 0.00 0.00 45.40 2.57
3455 3566 3.120060 GCAGCTAGGCCGAATAATCAATG 60.120 47.826 0.00 0.00 0.00 2.82
3529 3640 4.357018 TGTTTGTTACACGTCAATGCAA 57.643 36.364 0.00 0.00 0.00 4.08
3530 3641 4.733850 TGTTTGTTACACGTCAATGCAAA 58.266 34.783 0.00 0.00 0.00 3.68
3531 3642 4.559251 TGTTTGTTACACGTCAATGCAAAC 59.441 37.500 17.72 17.72 42.30 2.93
3532 3643 4.624336 TTGTTACACGTCAATGCAAACT 57.376 36.364 0.00 0.00 0.00 2.66
3534 3645 3.242903 TGTTACACGTCAATGCAAACTGG 60.243 43.478 0.00 0.00 0.00 4.00
3535 3646 1.674359 ACACGTCAATGCAAACTGGA 58.326 45.000 0.00 0.00 0.00 3.86
3547 3658 2.476241 GCAAACTGGAAAATGGCTTTCG 59.524 45.455 0.00 0.00 43.88 3.46
3548 3659 3.716601 CAAACTGGAAAATGGCTTTCGT 58.283 40.909 0.00 0.00 43.88 3.85
3549 3660 4.119136 CAAACTGGAAAATGGCTTTCGTT 58.881 39.130 0.00 0.00 43.88 3.85
3550 3661 4.400529 AACTGGAAAATGGCTTTCGTTT 57.599 36.364 0.00 0.00 43.88 3.60
3551 3662 3.977427 ACTGGAAAATGGCTTTCGTTTC 58.023 40.909 0.00 0.00 43.88 2.78
3552 3663 3.636764 ACTGGAAAATGGCTTTCGTTTCT 59.363 39.130 0.00 0.00 43.88 2.52
3553 3664 4.099419 ACTGGAAAATGGCTTTCGTTTCTT 59.901 37.500 0.00 0.00 43.88 2.52
3554 3665 4.367450 TGGAAAATGGCTTTCGTTTCTTG 58.633 39.130 0.00 0.00 43.88 3.02
3574 3685 1.603802 GTGTGGATGGAATGGCATACG 59.396 52.381 0.00 0.00 0.00 3.06
3576 3687 1.873591 GTGGATGGAATGGCATACGAC 59.126 52.381 0.00 0.00 0.00 4.34
3599 3710 3.914312 ACGTACCTGTGATCTGTTTCTG 58.086 45.455 0.00 0.00 0.00 3.02
3607 3718 7.851228 ACCTGTGATCTGTTTCTGAATATACA 58.149 34.615 0.00 0.00 0.00 2.29
3678 3795 5.121925 TGAGAGTAGTAGTAAGCAACACTCG 59.878 44.000 0.00 0.00 36.81 4.18
3744 3861 0.512952 GTCCACGCTGCACAAAGTAG 59.487 55.000 0.00 0.00 0.00 2.57
3745 3862 0.391228 TCCACGCTGCACAAAGTAGA 59.609 50.000 0.00 0.00 30.56 2.59
3746 3863 1.202592 TCCACGCTGCACAAAGTAGAA 60.203 47.619 0.00 0.00 30.56 2.10
3764 3881 9.503399 AAAGTAGAAAGTACACCTCCATAAAAG 57.497 33.333 0.00 0.00 0.00 2.27
3765 3882 8.431910 AGTAGAAAGTACACCTCCATAAAAGA 57.568 34.615 0.00 0.00 0.00 2.52
3766 3883 8.532819 AGTAGAAAGTACACCTCCATAAAAGAG 58.467 37.037 0.00 0.00 0.00 2.85
3767 3884 7.317722 AGAAAGTACACCTCCATAAAAGAGT 57.682 36.000 0.00 0.00 0.00 3.24
3768 3885 7.387643 AGAAAGTACACCTCCATAAAAGAGTC 58.612 38.462 0.00 0.00 0.00 3.36
3769 3886 6.681729 AAGTACACCTCCATAAAAGAGTCA 57.318 37.500 0.00 0.00 0.00 3.41
3770 3887 6.681729 AGTACACCTCCATAAAAGAGTCAA 57.318 37.500 0.00 0.00 0.00 3.18
3771 3888 7.259088 AGTACACCTCCATAAAAGAGTCAAT 57.741 36.000 0.00 0.00 0.00 2.57
3772 3889 7.690256 AGTACACCTCCATAAAAGAGTCAATT 58.310 34.615 0.00 0.00 0.00 2.32
3773 3890 8.822805 AGTACACCTCCATAAAAGAGTCAATTA 58.177 33.333 0.00 0.00 0.00 1.40
3774 3891 7.923414 ACACCTCCATAAAAGAGTCAATTAC 57.077 36.000 0.00 0.00 0.00 1.89
3775 3892 7.458397 ACACCTCCATAAAAGAGTCAATTACA 58.542 34.615 0.00 0.00 0.00 2.41
3776 3893 8.109634 ACACCTCCATAAAAGAGTCAATTACAT 58.890 33.333 0.00 0.00 0.00 2.29
3777 3894 8.616076 CACCTCCATAAAAGAGTCAATTACATC 58.384 37.037 0.00 0.00 0.00 3.06
3778 3895 8.328758 ACCTCCATAAAAGAGTCAATTACATCA 58.671 33.333 0.00 0.00 0.00 3.07
3779 3896 8.616076 CCTCCATAAAAGAGTCAATTACATCAC 58.384 37.037 0.00 0.00 0.00 3.06
3780 3897 9.166173 CTCCATAAAAGAGTCAATTACATCACA 57.834 33.333 0.00 0.00 0.00 3.58
3781 3898 9.166173 TCCATAAAAGAGTCAATTACATCACAG 57.834 33.333 0.00 0.00 0.00 3.66
3782 3899 8.400947 CCATAAAAGAGTCAATTACATCACAGG 58.599 37.037 0.00 0.00 0.00 4.00
3783 3900 8.950210 CATAAAAGAGTCAATTACATCACAGGT 58.050 33.333 0.00 0.00 0.00 4.00
3784 3901 6.808008 AAAGAGTCAATTACATCACAGGTG 57.192 37.500 0.00 0.00 0.00 4.00
3785 3902 5.489792 AGAGTCAATTACATCACAGGTGT 57.510 39.130 0.00 0.00 0.00 4.16
3786 3903 5.482908 AGAGTCAATTACATCACAGGTGTC 58.517 41.667 0.00 0.00 0.00 3.67
3787 3904 5.247110 AGAGTCAATTACATCACAGGTGTCT 59.753 40.000 0.00 0.00 0.00 3.41
3788 3905 5.240891 AGTCAATTACATCACAGGTGTCTG 58.759 41.667 0.00 1.93 46.10 3.51
3789 3906 5.012046 AGTCAATTACATCACAGGTGTCTGA 59.988 40.000 10.25 0.00 43.49 3.27
3790 3907 5.700832 GTCAATTACATCACAGGTGTCTGAA 59.299 40.000 10.25 0.00 43.49 3.02
3791 3908 5.700832 TCAATTACATCACAGGTGTCTGAAC 59.299 40.000 10.25 0.00 43.49 3.18
3792 3909 4.955811 TTACATCACAGGTGTCTGAACT 57.044 40.909 10.25 0.00 43.49 3.01
3793 3910 3.845781 ACATCACAGGTGTCTGAACTT 57.154 42.857 10.25 0.00 43.49 2.66
3794 3911 3.470709 ACATCACAGGTGTCTGAACTTG 58.529 45.455 10.25 0.00 43.49 3.16
3795 3912 2.620251 TCACAGGTGTCTGAACTTGG 57.380 50.000 0.00 0.00 43.49 3.61
3796 3913 0.947244 CACAGGTGTCTGAACTTGGC 59.053 55.000 0.00 0.00 43.49 4.52
3797 3914 0.546122 ACAGGTGTCTGAACTTGGCA 59.454 50.000 0.00 0.00 43.49 4.92
3798 3915 1.064758 ACAGGTGTCTGAACTTGGCAA 60.065 47.619 0.00 0.00 43.49 4.52
3799 3916 2.233271 CAGGTGTCTGAACTTGGCAAT 58.767 47.619 0.00 0.00 43.49 3.56
3800 3917 3.181445 ACAGGTGTCTGAACTTGGCAATA 60.181 43.478 0.00 0.00 43.49 1.90
3801 3918 3.820467 CAGGTGTCTGAACTTGGCAATAA 59.180 43.478 0.00 0.00 43.49 1.40
3802 3919 4.278170 CAGGTGTCTGAACTTGGCAATAAA 59.722 41.667 0.00 0.00 43.49 1.40
3803 3920 4.892934 AGGTGTCTGAACTTGGCAATAAAA 59.107 37.500 0.00 0.00 0.00 1.52
3804 3921 5.010012 AGGTGTCTGAACTTGGCAATAAAAG 59.990 40.000 0.00 0.00 0.00 2.27
3805 3922 5.221244 GGTGTCTGAACTTGGCAATAAAAGT 60.221 40.000 0.00 0.00 38.25 2.66
3806 3923 5.915196 GTGTCTGAACTTGGCAATAAAAGTC 59.085 40.000 0.00 0.00 35.60 3.01
3807 3924 5.592282 TGTCTGAACTTGGCAATAAAAGTCA 59.408 36.000 0.00 0.00 35.60 3.41
3808 3925 6.145535 GTCTGAACTTGGCAATAAAAGTCAG 58.854 40.000 0.00 7.80 35.60 3.51
3809 3926 5.827797 TCTGAACTTGGCAATAAAAGTCAGT 59.172 36.000 0.00 0.00 35.60 3.41
3810 3927 6.321181 TCTGAACTTGGCAATAAAAGTCAGTT 59.679 34.615 0.00 0.00 35.60 3.16
3811 3928 6.872920 TGAACTTGGCAATAAAAGTCAGTTT 58.127 32.000 0.00 0.00 35.60 2.66
3812 3929 6.756074 TGAACTTGGCAATAAAAGTCAGTTTG 59.244 34.615 0.00 0.00 35.60 2.93
3813 3930 6.463995 ACTTGGCAATAAAAGTCAGTTTGA 57.536 33.333 0.00 0.00 30.87 2.69
3814 3931 7.054491 ACTTGGCAATAAAAGTCAGTTTGAT 57.946 32.000 0.00 0.00 30.87 2.57
3815 3932 6.925165 ACTTGGCAATAAAAGTCAGTTTGATG 59.075 34.615 0.00 0.00 30.87 3.07
3816 3933 5.229423 TGGCAATAAAAGTCAGTTTGATGC 58.771 37.500 0.00 2.66 34.89 3.91
3817 3934 5.010922 TGGCAATAAAAGTCAGTTTGATGCT 59.989 36.000 8.82 0.00 35.46 3.79
3818 3935 6.208402 TGGCAATAAAAGTCAGTTTGATGCTA 59.792 34.615 8.82 2.40 35.46 3.49
3819 3936 7.090173 GGCAATAAAAGTCAGTTTGATGCTAA 58.910 34.615 8.82 0.00 35.46 3.09
3820 3937 7.598493 GGCAATAAAAGTCAGTTTGATGCTAAA 59.402 33.333 8.82 0.00 35.46 1.85
3821 3938 8.977505 GCAATAAAAGTCAGTTTGATGCTAAAA 58.022 29.630 3.71 0.00 33.82 1.52
3826 3943 8.947055 AAAGTCAGTTTGATGCTAAAATTTGT 57.053 26.923 0.00 0.00 0.00 2.83
3829 3946 9.683069 AGTCAGTTTGATGCTAAAATTTGTAAG 57.317 29.630 0.00 0.00 0.00 2.34
3830 3947 9.677567 GTCAGTTTGATGCTAAAATTTGTAAGA 57.322 29.630 0.00 0.00 0.00 2.10
3843 3960 8.980143 AAAATTTGTAAGATACATTGAACCGG 57.020 30.769 0.00 0.00 38.68 5.28
3844 3961 7.696992 AATTTGTAAGATACATTGAACCGGT 57.303 32.000 0.00 0.00 38.68 5.28
3845 3962 6.489127 TTTGTAAGATACATTGAACCGGTG 57.511 37.500 8.52 0.00 38.68 4.94
3846 3963 5.408880 TGTAAGATACATTGAACCGGTGA 57.591 39.130 8.52 0.00 32.89 4.02
3847 3964 5.172934 TGTAAGATACATTGAACCGGTGAC 58.827 41.667 8.52 6.46 32.89 3.67
3848 3965 3.973206 AGATACATTGAACCGGTGACA 57.027 42.857 8.52 9.54 0.00 3.58
3849 3966 4.280436 AGATACATTGAACCGGTGACAA 57.720 40.909 23.22 23.22 0.00 3.18
3850 3967 4.647611 AGATACATTGAACCGGTGACAAA 58.352 39.130 24.27 13.22 0.00 2.83
3851 3968 5.067273 AGATACATTGAACCGGTGACAAAA 58.933 37.500 24.27 15.98 0.00 2.44
3852 3969 3.430333 ACATTGAACCGGTGACAAAAC 57.570 42.857 24.27 6.51 0.00 2.43
3853 3970 3.020984 ACATTGAACCGGTGACAAAACT 58.979 40.909 24.27 10.97 0.00 2.66
3854 3971 3.445805 ACATTGAACCGGTGACAAAACTT 59.554 39.130 24.27 10.69 0.00 2.66
3855 3972 3.495670 TTGAACCGGTGACAAAACTTG 57.504 42.857 20.25 0.00 0.00 3.16
3856 3973 1.746220 TGAACCGGTGACAAAACTTGG 59.254 47.619 8.52 0.00 34.12 3.61
3857 3974 0.458260 AACCGGTGACAAAACTTGGC 59.542 50.000 8.52 0.00 39.85 4.52
3858 3975 0.395173 ACCGGTGACAAAACTTGGCT 60.395 50.000 6.12 0.00 40.19 4.75
3859 3976 0.744281 CCGGTGACAAAACTTGGCTT 59.256 50.000 0.00 0.00 40.19 4.35
3860 3977 1.535860 CCGGTGACAAAACTTGGCTTG 60.536 52.381 0.00 0.00 40.19 4.01
3861 3978 1.535860 CGGTGACAAAACTTGGCTTGG 60.536 52.381 0.00 0.00 40.19 3.61
3862 3979 1.754226 GGTGACAAAACTTGGCTTGGA 59.246 47.619 0.00 0.00 40.19 3.53
3863 3980 2.481276 GGTGACAAAACTTGGCTTGGAC 60.481 50.000 0.00 0.00 40.19 4.02
3864 3981 1.403679 TGACAAAACTTGGCTTGGACG 59.596 47.619 0.00 0.00 40.19 4.79
3865 3982 1.404035 GACAAAACTTGGCTTGGACGT 59.596 47.619 0.00 0.00 35.19 4.34
3866 3983 1.134175 ACAAAACTTGGCTTGGACGTG 59.866 47.619 0.00 0.00 34.12 4.49
3867 3984 0.102300 AAAACTTGGCTTGGACGTGC 59.898 50.000 0.00 0.00 0.00 5.34
3868 3985 1.034838 AAACTTGGCTTGGACGTGCA 61.035 50.000 5.33 5.33 0.00 4.57
3869 3986 0.823356 AACTTGGCTTGGACGTGCAT 60.823 50.000 11.62 0.00 0.00 3.96
3870 3987 1.237285 ACTTGGCTTGGACGTGCATC 61.237 55.000 11.62 5.92 0.00 3.91
3871 3988 0.957395 CTTGGCTTGGACGTGCATCT 60.957 55.000 11.62 0.00 0.00 2.90
3872 3989 0.323302 TTGGCTTGGACGTGCATCTA 59.677 50.000 11.62 0.88 0.00 1.98
3873 3990 0.391130 TGGCTTGGACGTGCATCTAC 60.391 55.000 11.62 2.60 0.00 2.59
3875 3992 0.457853 GCTTGGACGTGCATCTACGA 60.458 55.000 11.62 0.00 46.46 3.43
3876 3993 1.802880 GCTTGGACGTGCATCTACGAT 60.803 52.381 11.62 0.00 46.46 3.73
3877 3994 1.854743 CTTGGACGTGCATCTACGATG 59.145 52.381 11.62 0.00 46.46 3.84
3878 3995 0.815095 TGGACGTGCATCTACGATGT 59.185 50.000 5.33 0.00 46.46 3.06
3879 3996 1.203758 TGGACGTGCATCTACGATGTT 59.796 47.619 5.33 0.00 46.46 2.71
3880 3997 2.424246 TGGACGTGCATCTACGATGTTA 59.576 45.455 5.33 0.00 46.46 2.41
3881 3998 3.119424 TGGACGTGCATCTACGATGTTAA 60.119 43.478 5.33 0.00 46.46 2.01
3882 3999 4.049186 GGACGTGCATCTACGATGTTAAT 58.951 43.478 0.63 0.00 46.46 1.40
3883 4000 4.148348 GGACGTGCATCTACGATGTTAATC 59.852 45.833 0.63 0.60 46.46 1.75
3884 4001 4.678622 ACGTGCATCTACGATGTTAATCA 58.321 39.130 5.23 0.00 46.46 2.57
3885 4002 5.289595 ACGTGCATCTACGATGTTAATCAT 58.710 37.500 5.23 0.00 46.46 2.45
3886 4003 5.175673 ACGTGCATCTACGATGTTAATCATG 59.824 40.000 5.23 0.00 46.46 3.07
3887 4004 5.175673 CGTGCATCTACGATGTTAATCATGT 59.824 40.000 5.81 0.00 46.46 3.21
3888 4005 6.292328 CGTGCATCTACGATGTTAATCATGTT 60.292 38.462 5.81 0.00 46.46 2.71
3889 4006 7.409697 GTGCATCTACGATGTTAATCATGTTT 58.590 34.615 5.81 0.00 36.83 2.83
3890 4007 7.910162 GTGCATCTACGATGTTAATCATGTTTT 59.090 33.333 5.81 0.00 36.83 2.43
3891 4008 8.122330 TGCATCTACGATGTTAATCATGTTTTC 58.878 33.333 5.81 0.00 36.83 2.29
3892 4009 8.338259 GCATCTACGATGTTAATCATGTTTTCT 58.662 33.333 5.81 0.00 36.83 2.52
3898 4015 8.273557 ACGATGTTAATCATGTTTTCTATACGC 58.726 33.333 0.00 0.00 36.83 4.42
3899 4016 8.272866 CGATGTTAATCATGTTTTCTATACGCA 58.727 33.333 0.00 0.00 36.83 5.24
3900 4017 9.370126 GATGTTAATCATGTTTTCTATACGCAC 57.630 33.333 0.00 0.00 36.83 5.34
3901 4018 8.257830 TGTTAATCATGTTTTCTATACGCACA 57.742 30.769 0.00 0.00 0.00 4.57
3902 4019 8.722394 TGTTAATCATGTTTTCTATACGCACAA 58.278 29.630 0.00 0.00 0.00 3.33
3903 4020 8.995906 GTTAATCATGTTTTCTATACGCACAAC 58.004 33.333 0.00 0.00 0.00 3.32
3904 4021 6.735678 ATCATGTTTTCTATACGCACAACA 57.264 33.333 0.00 0.00 0.00 3.33
3905 4022 6.735678 TCATGTTTTCTATACGCACAACAT 57.264 33.333 0.00 0.00 35.68 2.71
3906 4023 6.541969 TCATGTTTTCTATACGCACAACATG 58.458 36.000 14.03 14.03 46.78 3.21
3907 4024 5.933187 TGTTTTCTATACGCACAACATGT 57.067 34.783 0.00 0.00 0.00 3.21
3908 4025 6.307031 TGTTTTCTATACGCACAACATGTT 57.693 33.333 4.92 4.92 0.00 2.71
3909 4026 6.139435 TGTTTTCTATACGCACAACATGTTG 58.861 36.000 32.03 32.03 45.58 3.33
3910 4027 6.017852 TGTTTTCTATACGCACAACATGTTGA 60.018 34.615 38.30 20.26 42.93 3.18
3911 4028 5.524511 TTCTATACGCACAACATGTTGAC 57.475 39.130 38.30 28.06 42.93 3.18
3912 4029 2.873170 ATACGCACAACATGTTGACG 57.127 45.000 38.30 36.33 42.93 4.35
3913 4030 1.854227 TACGCACAACATGTTGACGA 58.146 45.000 39.15 28.05 42.93 4.20
3914 4031 0.581529 ACGCACAACATGTTGACGAG 59.418 50.000 39.15 31.74 42.93 4.18
3915 4032 0.110688 CGCACAACATGTTGACGAGG 60.111 55.000 38.30 23.20 42.93 4.63
3916 4033 0.385974 GCACAACATGTTGACGAGGC 60.386 55.000 38.30 27.31 42.93 4.70
3917 4034 0.110688 CACAACATGTTGACGAGGCG 60.111 55.000 38.30 14.98 42.93 5.52
3918 4035 1.154413 CAACATGTTGACGAGGCGC 60.154 57.895 30.69 0.00 42.93 6.53
3919 4036 2.816692 CAACATGTTGACGAGGCGCG 62.817 60.000 30.69 9.63 42.93 6.86
3920 4037 4.505217 CATGTTGACGAGGCGCGC 62.505 66.667 25.94 25.94 46.04 6.86
3937 4054 2.034066 CCAACATGGCGTGGGACT 59.966 61.111 12.05 0.00 42.09 3.85
3938 4055 2.040544 CCAACATGGCGTGGGACTC 61.041 63.158 12.05 0.00 42.09 3.36
3939 4056 1.302431 CAACATGGCGTGGGACTCA 60.302 57.895 12.05 0.00 0.00 3.41
3940 4057 0.888736 CAACATGGCGTGGGACTCAA 60.889 55.000 12.05 0.00 0.00 3.02
3941 4058 0.038166 AACATGGCGTGGGACTCAAT 59.962 50.000 12.05 0.00 0.00 2.57
3942 4059 0.677731 ACATGGCGTGGGACTCAATG 60.678 55.000 12.05 0.00 0.00 2.82
3943 4060 0.677731 CATGGCGTGGGACTCAATGT 60.678 55.000 0.00 0.00 0.00 2.71
3944 4061 0.908910 ATGGCGTGGGACTCAATGTA 59.091 50.000 0.00 0.00 0.00 2.29
3945 4062 0.687920 TGGCGTGGGACTCAATGTAA 59.312 50.000 0.00 0.00 0.00 2.41
3946 4063 1.338674 TGGCGTGGGACTCAATGTAAG 60.339 52.381 0.00 0.00 0.00 2.34
3947 4064 1.338769 GGCGTGGGACTCAATGTAAGT 60.339 52.381 0.00 0.00 0.00 2.24
3948 4065 1.732259 GCGTGGGACTCAATGTAAGTG 59.268 52.381 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.749245 AACGAGATGTCATTTGGTTGAC 57.251 40.909 3.39 0.00 45.05 3.18
7 8 4.215399 GGAAACGAGATGTCATTTGGTTGA 59.785 41.667 4.80 0.00 0.00 3.18
8 9 4.216257 AGGAAACGAGATGTCATTTGGTTG 59.784 41.667 4.80 0.00 0.00 3.77
9 10 4.398319 AGGAAACGAGATGTCATTTGGTT 58.602 39.130 0.00 0.00 0.00 3.67
10 11 4.021102 AGGAAACGAGATGTCATTTGGT 57.979 40.909 0.00 0.00 0.00 3.67
11 12 6.683974 AATAGGAAACGAGATGTCATTTGG 57.316 37.500 0.00 0.00 0.00 3.28
12 13 7.978982 AGAAATAGGAAACGAGATGTCATTTG 58.021 34.615 0.00 0.00 0.00 2.32
13 14 9.838339 ATAGAAATAGGAAACGAGATGTCATTT 57.162 29.630 0.00 0.00 0.00 2.32
14 15 9.838339 AATAGAAATAGGAAACGAGATGTCATT 57.162 29.630 0.00 0.00 0.00 2.57
15 16 9.482627 GAATAGAAATAGGAAACGAGATGTCAT 57.517 33.333 0.00 0.00 0.00 3.06
16 17 8.474831 TGAATAGAAATAGGAAACGAGATGTCA 58.525 33.333 0.00 0.00 0.00 3.58
17 18 8.873215 TGAATAGAAATAGGAAACGAGATGTC 57.127 34.615 0.00 0.00 0.00 3.06
36 37 9.531942 GGCATGTATCTCAGATCTTATGAATAG 57.468 37.037 8.97 0.00 0.00 1.73
37 38 9.039165 TGGCATGTATCTCAGATCTTATGAATA 57.961 33.333 8.97 0.00 0.00 1.75
38 39 7.914859 TGGCATGTATCTCAGATCTTATGAAT 58.085 34.615 8.97 0.00 0.00 2.57
39 40 7.307131 TGGCATGTATCTCAGATCTTATGAA 57.693 36.000 8.97 0.00 0.00 2.57
40 41 6.923199 TGGCATGTATCTCAGATCTTATGA 57.077 37.500 8.97 0.00 0.00 2.15
41 42 7.557724 AGATGGCATGTATCTCAGATCTTATG 58.442 38.462 3.81 0.00 29.05 1.90
42 43 7.736881 AGATGGCATGTATCTCAGATCTTAT 57.263 36.000 3.81 0.00 29.05 1.73
43 44 7.167924 GAGATGGCATGTATCTCAGATCTTA 57.832 40.000 24.83 0.00 46.22 2.10
44 45 6.040209 GAGATGGCATGTATCTCAGATCTT 57.960 41.667 24.83 3.08 46.22 2.40
45 46 5.664294 GAGATGGCATGTATCTCAGATCT 57.336 43.478 24.83 0.00 46.22 2.75
51 52 5.558818 AGGAAATGAGATGGCATGTATCTC 58.441 41.667 23.83 23.83 46.82 2.75
52 53 5.579753 AGGAAATGAGATGGCATGTATCT 57.420 39.130 3.81 12.53 37.59 1.98
53 54 6.233434 TGTAGGAAATGAGATGGCATGTATC 58.767 40.000 3.81 0.45 0.00 2.24
54 55 6.191657 TGTAGGAAATGAGATGGCATGTAT 57.808 37.500 3.81 0.00 0.00 2.29
55 56 5.628797 TGTAGGAAATGAGATGGCATGTA 57.371 39.130 3.81 0.00 0.00 2.29
56 57 4.508551 TGTAGGAAATGAGATGGCATGT 57.491 40.909 3.81 0.00 0.00 3.21
57 58 5.840243 TTTGTAGGAAATGAGATGGCATG 57.160 39.130 3.81 0.00 0.00 4.06
58 59 7.343833 AGAATTTTGTAGGAAATGAGATGGCAT 59.656 33.333 0.00 0.00 30.06 4.40
59 60 6.664816 AGAATTTTGTAGGAAATGAGATGGCA 59.335 34.615 0.00 0.00 30.06 4.92
60 61 7.105241 AGAATTTTGTAGGAAATGAGATGGC 57.895 36.000 0.00 0.00 30.06 4.40
96 97 9.627123 CCTGTTTTGGTTCATAGAATAGGATTA 57.373 33.333 0.00 0.00 32.33 1.75
97 98 7.068716 GCCTGTTTTGGTTCATAGAATAGGATT 59.931 37.037 0.00 0.00 32.33 3.01
98 99 6.547510 GCCTGTTTTGGTTCATAGAATAGGAT 59.452 38.462 0.00 0.00 32.33 3.24
99 100 5.885912 GCCTGTTTTGGTTCATAGAATAGGA 59.114 40.000 0.00 0.00 32.33 2.94
100 101 5.067805 GGCCTGTTTTGGTTCATAGAATAGG 59.932 44.000 0.00 0.00 33.36 2.57
101 102 5.888161 AGGCCTGTTTTGGTTCATAGAATAG 59.112 40.000 3.11 0.00 0.00 1.73
102 103 5.826643 AGGCCTGTTTTGGTTCATAGAATA 58.173 37.500 3.11 0.00 0.00 1.75
103 104 4.677182 AGGCCTGTTTTGGTTCATAGAAT 58.323 39.130 3.11 0.00 0.00 2.40
104 105 4.112634 AGGCCTGTTTTGGTTCATAGAA 57.887 40.909 3.11 0.00 0.00 2.10
105 106 3.806949 AGGCCTGTTTTGGTTCATAGA 57.193 42.857 3.11 0.00 0.00 1.98
106 107 5.710099 TCTTTAGGCCTGTTTTGGTTCATAG 59.290 40.000 17.99 0.00 0.00 2.23
107 108 5.475564 GTCTTTAGGCCTGTTTTGGTTCATA 59.524 40.000 17.99 0.00 0.00 2.15
108 109 4.280929 GTCTTTAGGCCTGTTTTGGTTCAT 59.719 41.667 17.99 0.00 0.00 2.57
109 110 3.634910 GTCTTTAGGCCTGTTTTGGTTCA 59.365 43.478 17.99 0.00 0.00 3.18
110 111 3.304458 CGTCTTTAGGCCTGTTTTGGTTC 60.304 47.826 17.99 0.00 0.00 3.62
111 112 2.621526 CGTCTTTAGGCCTGTTTTGGTT 59.378 45.455 17.99 0.00 0.00 3.67
112 113 2.227194 CGTCTTTAGGCCTGTTTTGGT 58.773 47.619 17.99 0.00 0.00 3.67
113 114 1.539827 CCGTCTTTAGGCCTGTTTTGG 59.460 52.381 17.99 6.44 0.00 3.28
114 115 1.539827 CCCGTCTTTAGGCCTGTTTTG 59.460 52.381 17.99 0.14 0.00 2.44
115 116 1.422402 TCCCGTCTTTAGGCCTGTTTT 59.578 47.619 17.99 0.00 0.00 2.43
116 117 1.061546 TCCCGTCTTTAGGCCTGTTT 58.938 50.000 17.99 0.00 0.00 2.83
117 118 1.003233 CTTCCCGTCTTTAGGCCTGTT 59.997 52.381 17.99 0.00 0.00 3.16
118 119 0.613777 CTTCCCGTCTTTAGGCCTGT 59.386 55.000 17.99 0.00 0.00 4.00
119 120 0.107654 CCTTCCCGTCTTTAGGCCTG 60.108 60.000 17.99 0.00 0.00 4.85
120 121 0.546988 ACCTTCCCGTCTTTAGGCCT 60.547 55.000 11.78 11.78 0.00 5.19
121 122 0.392595 CACCTTCCCGTCTTTAGGCC 60.393 60.000 0.00 0.00 0.00 5.19
122 123 1.025113 GCACCTTCCCGTCTTTAGGC 61.025 60.000 0.00 0.00 0.00 3.93
123 124 0.739813 CGCACCTTCCCGTCTTTAGG 60.740 60.000 0.00 0.00 0.00 2.69
135 136 3.425713 CGAGCATGCACGCACCTT 61.426 61.111 23.93 0.00 0.00 3.50
142 143 3.197790 ATGGTCGCGAGCATGCAC 61.198 61.111 42.79 17.41 46.50 4.57
182 183 3.251004 GGAATGACAGGTGTTGAACTCAC 59.749 47.826 0.00 0.00 35.36 3.51
209 210 3.489416 GGAAAACGCTTGATTTGTTCCAC 59.511 43.478 0.00 0.00 0.00 4.02
243 244 2.610479 GGTTAAAGCAGCCTTTTGCCTC 60.610 50.000 0.00 0.00 45.18 4.70
245 246 1.795768 GGTTAAAGCAGCCTTTTGCC 58.204 50.000 0.00 0.00 45.18 4.52
248 249 1.611977 GACCGGTTAAAGCAGCCTTTT 59.388 47.619 9.42 0.00 41.37 2.27
295 296 2.546195 ACGTGAGTCATTCTCTACGC 57.454 50.000 0.00 0.00 44.19 4.42
313 314 4.844522 CCGCTTCTTTTTACGCTTTCTAAC 59.155 41.667 0.00 0.00 0.00 2.34
323 324 0.237498 ACAGCGCCGCTTCTTTTTAC 59.763 50.000 9.89 0.00 36.40 2.01
328 333 2.154798 TACTGACAGCGCCGCTTCTT 62.155 55.000 9.89 0.00 36.40 2.52
329 334 2.549611 CTACTGACAGCGCCGCTTCT 62.550 60.000 9.89 0.00 36.40 2.85
334 339 2.725145 CGTATATCTACTGACAGCGCCG 60.725 54.545 2.29 0.00 0.00 6.46
338 343 3.827625 CCTGCGTATATCTACTGACAGC 58.172 50.000 1.25 0.00 0.00 4.40
340 345 2.557056 GGCCTGCGTATATCTACTGACA 59.443 50.000 0.00 0.00 0.00 3.58
341 346 2.557056 TGGCCTGCGTATATCTACTGAC 59.443 50.000 3.32 0.00 0.00 3.51
349 354 7.796054 AGATATTTCTATTGGCCTGCGTATAT 58.204 34.615 3.32 0.00 0.00 0.86
350 355 7.182817 AGATATTTCTATTGGCCTGCGTATA 57.817 36.000 3.32 0.00 0.00 1.47
354 359 3.369147 CGAGATATTTCTATTGGCCTGCG 59.631 47.826 3.32 0.00 30.30 5.18
470 476 8.381387 GCTTGCTTGAGTAGTTACTTATTGTAC 58.619 37.037 0.00 0.00 36.50 2.90
471 477 7.274904 CGCTTGCTTGAGTAGTTACTTATTGTA 59.725 37.037 0.00 0.00 36.50 2.41
473 479 6.090898 ACGCTTGCTTGAGTAGTTACTTATTG 59.909 38.462 0.00 0.00 36.50 1.90
476 482 4.921515 CACGCTTGCTTGAGTAGTTACTTA 59.078 41.667 0.00 0.00 36.50 2.24
477 483 3.741344 CACGCTTGCTTGAGTAGTTACTT 59.259 43.478 0.00 0.00 36.50 2.24
478 484 3.318017 CACGCTTGCTTGAGTAGTTACT 58.682 45.455 0.00 0.00 39.71 2.24
479 485 2.159827 GCACGCTTGCTTGAGTAGTTAC 60.160 50.000 8.12 0.00 46.17 2.50
523 529 0.544120 CCTCCCTCCTCTATGCTCCC 60.544 65.000 0.00 0.00 0.00 4.30
528 534 1.910772 CGCCCCTCCCTCCTCTATG 60.911 68.421 0.00 0.00 0.00 2.23
529 535 1.665948 TTCGCCCCTCCCTCCTCTAT 61.666 60.000 0.00 0.00 0.00 1.98
530 536 1.882189 TTTCGCCCCTCCCTCCTCTA 61.882 60.000 0.00 0.00 0.00 2.43
531 537 3.254035 TTTCGCCCCTCCCTCCTCT 62.254 63.158 0.00 0.00 0.00 3.69
627 668 1.334869 CAATTAGCCAATCCACGGAGC 59.665 52.381 0.00 0.00 0.00 4.70
628 669 2.917933 TCAATTAGCCAATCCACGGAG 58.082 47.619 0.00 0.00 0.00 4.63
629 670 3.576078 ATCAATTAGCCAATCCACGGA 57.424 42.857 0.00 0.00 0.00 4.69
670 713 2.859273 AATCGGGCAAGAGCTGGACG 62.859 60.000 0.00 0.00 41.70 4.79
740 783 0.168128 AAATCTTAACCACGCGCTGC 59.832 50.000 5.73 0.00 0.00 5.25
741 784 2.611974 AAAATCTTAACCACGCGCTG 57.388 45.000 5.73 3.55 0.00 5.18
742 785 3.126343 CCTAAAAATCTTAACCACGCGCT 59.874 43.478 5.73 0.00 0.00 5.92
743 786 3.422655 CCTAAAAATCTTAACCACGCGC 58.577 45.455 5.73 0.00 0.00 6.86
744 787 3.181504 CCCCTAAAAATCTTAACCACGCG 60.182 47.826 3.53 3.53 0.00 6.01
745 788 3.129813 CCCCCTAAAAATCTTAACCACGC 59.870 47.826 0.00 0.00 0.00 5.34
746 789 4.976224 CCCCCTAAAAATCTTAACCACG 57.024 45.455 0.00 0.00 0.00 4.94
786 829 4.767255 CTGGTCTCCGGCACTGCC 62.767 72.222 10.35 10.35 46.75 4.85
816 859 4.161295 TGAGGGGAATGCGAGCCG 62.161 66.667 0.00 0.00 0.00 5.52
817 860 2.514824 GTGAGGGGAATGCGAGCC 60.515 66.667 0.00 0.00 0.00 4.70
818 861 2.514824 GGTGAGGGGAATGCGAGC 60.515 66.667 0.00 0.00 0.00 5.03
819 862 2.202932 CGGTGAGGGGAATGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
827 870 1.348064 TATAGATTGGCGGTGAGGGG 58.652 55.000 0.00 0.00 0.00 4.79
900 943 0.560688 GGAGAGGAGAGGAGATGGGT 59.439 60.000 0.00 0.00 0.00 4.51
901 944 0.178935 GGGAGAGGAGAGGAGATGGG 60.179 65.000 0.00 0.00 0.00 4.00
902 945 0.178935 GGGGAGAGGAGAGGAGATGG 60.179 65.000 0.00 0.00 0.00 3.51
903 946 0.178935 GGGGGAGAGGAGAGGAGATG 60.179 65.000 0.00 0.00 0.00 2.90
904 947 2.260619 GGGGGAGAGGAGAGGAGAT 58.739 63.158 0.00 0.00 0.00 2.75
905 948 3.777075 GGGGGAGAGGAGAGGAGA 58.223 66.667 0.00 0.00 0.00 3.71
920 963 1.758906 GAGGAGGAAGACGAGGGGG 60.759 68.421 0.00 0.00 0.00 5.40
922 965 2.122167 CGGAGGAGGAAGACGAGGG 61.122 68.421 0.00 0.00 0.00 4.30
953 1000 2.559440 GTCAGCTGCAAAGGATAGGAG 58.441 52.381 9.47 0.00 0.00 3.69
954 1001 1.134699 CGTCAGCTGCAAAGGATAGGA 60.135 52.381 9.47 0.00 0.00 2.94
955 1002 1.293924 CGTCAGCTGCAAAGGATAGG 58.706 55.000 9.47 0.00 0.00 2.57
956 1003 1.134699 TCCGTCAGCTGCAAAGGATAG 60.135 52.381 9.47 0.00 0.00 2.08
957 1004 0.901827 TCCGTCAGCTGCAAAGGATA 59.098 50.000 9.47 0.00 0.00 2.59
971 1018 2.378084 GGCTTTCGTCGGTTCCGTC 61.378 63.158 11.04 4.86 0.00 4.79
1012 1059 2.345876 GAGCAAGCAGAGGAAGAGAAC 58.654 52.381 0.00 0.00 0.00 3.01
1014 1061 0.529833 CGAGCAAGCAGAGGAAGAGA 59.470 55.000 0.00 0.00 0.00 3.10
1113 1160 3.437795 CTGCTGCCGCCCTTCTTG 61.438 66.667 0.00 0.00 34.43 3.02
1155 1202 4.090588 ACGTACGGCCACCCCATG 62.091 66.667 21.06 0.00 0.00 3.66
1233 1280 0.035439 AGATGGGCCCGTACTTGTTG 60.035 55.000 19.13 0.00 0.00 3.33
1545 1592 2.233431 AGCACTCACAGTCTTCATCTCC 59.767 50.000 0.00 0.00 0.00 3.71
1581 1628 1.452108 GTGGCGGGGAATGGAAGAG 60.452 63.158 0.00 0.00 0.00 2.85
1582 1629 1.497309 AAGTGGCGGGGAATGGAAGA 61.497 55.000 0.00 0.00 0.00 2.87
1583 1630 1.000896 AAGTGGCGGGGAATGGAAG 60.001 57.895 0.00 0.00 0.00 3.46
1595 1642 0.892814 AGGAAAGCAGAGCAAGTGGC 60.893 55.000 0.00 0.00 45.30 5.01
1628 1675 3.198068 TCGAGCTCCAATCATTTAGCAC 58.802 45.455 8.47 0.00 37.44 4.40
1658 1705 1.928595 GCGCCATAACACCAACACAAC 60.929 52.381 0.00 0.00 0.00 3.32
1661 1708 0.109781 CTGCGCCATAACACCAACAC 60.110 55.000 4.18 0.00 0.00 3.32
2079 2126 1.547675 GGGTCAGCTGGGTTCATGAAA 60.548 52.381 15.13 0.00 0.00 2.69
2080 2127 0.038166 GGGTCAGCTGGGTTCATGAA 59.962 55.000 15.13 3.38 0.00 2.57
2081 2128 1.685224 GGGTCAGCTGGGTTCATGA 59.315 57.895 15.13 0.00 0.00 3.07
2082 2129 1.746615 CGGGTCAGCTGGGTTCATG 60.747 63.158 15.13 0.00 0.00 3.07
2083 2130 2.671070 CGGGTCAGCTGGGTTCAT 59.329 61.111 15.13 0.00 0.00 2.57
2084 2131 4.329545 GCGGGTCAGCTGGGTTCA 62.330 66.667 15.13 0.00 0.00 3.18
2103 2150 1.745489 GCTTTTCGATCGGGTGCCT 60.745 57.895 16.41 0.00 0.00 4.75
2106 2153 1.425428 GCTGCTTTTCGATCGGGTG 59.575 57.895 16.41 4.72 0.00 4.61
2136 2183 5.819379 GCTCTTCCTGTTGATTGTATGATGA 59.181 40.000 0.00 0.00 0.00 2.92
2141 2188 3.935203 CGTGCTCTTCCTGTTGATTGTAT 59.065 43.478 0.00 0.00 0.00 2.29
2148 2195 2.671177 CGGCGTGCTCTTCCTGTTG 61.671 63.158 0.00 0.00 0.00 3.33
2232 2279 4.090588 GATCACCCGGCCCGTCAA 62.091 66.667 0.85 0.00 0.00 3.18
2338 2385 0.447801 ACGACCAAAGCGATTGATGC 59.552 50.000 6.83 0.00 41.85 3.91
2390 2445 1.005748 CACTGCTGTGCTCCGAGAA 60.006 57.895 11.01 0.00 37.38 2.87
2469 2524 1.140052 TGAGTTGCGAGTTTCCCTTGA 59.860 47.619 0.00 0.00 0.00 3.02
2470 2525 1.264288 GTGAGTTGCGAGTTTCCCTTG 59.736 52.381 0.00 0.00 0.00 3.61
2473 2528 0.250338 AGGTGAGTTGCGAGTTTCCC 60.250 55.000 0.00 0.00 0.00 3.97
2610 2682 0.530744 TGACCTCGAATCGTGAAGGG 59.469 55.000 12.50 6.77 0.00 3.95
2699 2771 3.671433 GCAGTCACGAACCAAGACGTATA 60.671 47.826 0.00 0.00 40.76 1.47
2700 2772 2.925306 GCAGTCACGAACCAAGACGTAT 60.925 50.000 0.00 0.00 40.76 3.06
2701 2773 1.601162 GCAGTCACGAACCAAGACGTA 60.601 52.381 0.00 0.00 40.76 3.57
2706 2778 0.532862 ACCTGCAGTCACGAACCAAG 60.533 55.000 13.81 0.00 0.00 3.61
2797 2869 2.107953 GGACGAGCATCTCCAGCC 59.892 66.667 0.00 0.00 34.08 4.85
2978 3081 2.353607 CGTCGCCTCTATCGTGCC 60.354 66.667 0.00 0.00 0.00 5.01
3137 3240 7.067496 TCAAGAATCTGTACAGAGGACTTTT 57.933 36.000 28.29 17.48 41.33 2.27
3146 3249 3.196469 TCCTGGCTCAAGAATCTGTACAG 59.804 47.826 17.17 17.17 0.00 2.74
3160 3263 2.187946 CCGTCATGGTCCTGGCTC 59.812 66.667 0.00 0.00 0.00 4.70
3189 3292 2.420372 GAGCGGGATTTTTCTTGGTCTC 59.580 50.000 0.00 0.00 0.00 3.36
3207 3310 3.685058 GTCTGTGTGTGTTTTCAAGAGC 58.315 45.455 0.00 0.00 0.00 4.09
3213 3316 2.033151 GCCTACGTCTGTGTGTGTTTTC 60.033 50.000 0.00 0.00 0.00 2.29
3315 3418 6.906678 GTGTTGCCAAAAACAATGAAAATCTC 59.093 34.615 0.00 0.00 41.52 2.75
3323 3426 6.454795 AGTATAGGTGTTGCCAAAAACAATG 58.545 36.000 0.00 0.00 41.52 2.82
3327 3430 6.812879 ACTAGTATAGGTGTTGCCAAAAAC 57.187 37.500 0.00 0.00 44.97 2.43
3355 3458 2.166254 GCTGTCTTCTTCTCTCCTCCTG 59.834 54.545 0.00 0.00 0.00 3.86
3367 3470 1.617850 CCTGTCAGTCTGCTGTCTTCT 59.382 52.381 0.00 0.00 43.05 2.85
3368 3471 1.938926 GCCTGTCAGTCTGCTGTCTTC 60.939 57.143 0.00 0.00 43.05 2.87
3369 3472 0.034616 GCCTGTCAGTCTGCTGTCTT 59.965 55.000 0.00 0.00 43.05 3.01
3399 3502 0.880718 GCGGGCAGCCTATCTTACAC 60.881 60.000 12.43 0.00 40.81 2.90
3452 3563 2.120909 CCCTTTGCCGCGATCCATT 61.121 57.895 8.23 0.00 0.00 3.16
3529 3640 4.099419 AGAAACGAAAGCCATTTTCCAGTT 59.901 37.500 0.00 0.00 41.78 3.16
3530 3641 3.636764 AGAAACGAAAGCCATTTTCCAGT 59.363 39.130 0.00 0.00 41.78 4.00
3531 3642 4.243007 AGAAACGAAAGCCATTTTCCAG 57.757 40.909 0.00 0.00 41.78 3.86
3532 3643 4.142049 ACAAGAAACGAAAGCCATTTTCCA 60.142 37.500 0.00 0.00 41.78 3.53
3534 3645 4.803613 ACACAAGAAACGAAAGCCATTTTC 59.196 37.500 0.00 0.00 41.46 2.29
3535 3646 4.566360 CACACAAGAAACGAAAGCCATTTT 59.434 37.500 0.00 0.00 0.00 1.82
3547 3658 3.614870 GCCATTCCATCCACACAAGAAAC 60.615 47.826 0.00 0.00 0.00 2.78
3548 3659 2.562298 GCCATTCCATCCACACAAGAAA 59.438 45.455 0.00 0.00 0.00 2.52
3549 3660 2.170166 GCCATTCCATCCACACAAGAA 58.830 47.619 0.00 0.00 0.00 2.52
3550 3661 1.075212 TGCCATTCCATCCACACAAGA 59.925 47.619 0.00 0.00 0.00 3.02
3551 3662 1.548081 TGCCATTCCATCCACACAAG 58.452 50.000 0.00 0.00 0.00 3.16
3552 3663 2.234896 ATGCCATTCCATCCACACAA 57.765 45.000 0.00 0.00 0.00 3.33
3553 3664 2.653726 GTATGCCATTCCATCCACACA 58.346 47.619 0.00 0.00 0.00 3.72
3554 3665 1.603802 CGTATGCCATTCCATCCACAC 59.396 52.381 0.00 0.00 0.00 3.82
3574 3685 4.698583 AACAGATCACAGGTACGTAGTC 57.301 45.455 0.00 0.00 43.93 2.59
3576 3687 5.096169 CAGAAACAGATCACAGGTACGTAG 58.904 45.833 0.00 0.00 0.00 3.51
3612 3723 7.987649 AGACAGTTGATTAGTACTAGTACTGC 58.012 38.462 35.52 26.01 45.25 4.40
3618 3729 6.853872 GCATCGAGACAGTTGATTAGTACTAG 59.146 42.308 2.23 0.00 0.00 2.57
3722 3839 0.040958 CTTTGTGCAGCGTGGACTTC 60.041 55.000 10.02 0.00 39.59 3.01
3744 3861 7.159372 TGACTCTTTTATGGAGGTGTACTTTC 58.841 38.462 0.00 0.00 35.34 2.62
3745 3862 7.074653 TGACTCTTTTATGGAGGTGTACTTT 57.925 36.000 0.00 0.00 35.34 2.66
3746 3863 6.681729 TGACTCTTTTATGGAGGTGTACTT 57.318 37.500 0.00 0.00 35.34 2.24
3764 3881 5.349817 CAGACACCTGTGATGTAATTGACTC 59.650 44.000 3.94 0.00 35.70 3.36
3765 3882 5.012046 TCAGACACCTGTGATGTAATTGACT 59.988 40.000 3.94 0.00 41.16 3.41
3766 3883 5.237815 TCAGACACCTGTGATGTAATTGAC 58.762 41.667 3.94 0.00 41.16 3.18
3767 3884 5.482163 TCAGACACCTGTGATGTAATTGA 57.518 39.130 3.94 0.00 41.16 2.57
3768 3885 5.702670 AGTTCAGACACCTGTGATGTAATTG 59.297 40.000 3.94 0.00 41.16 2.32
3769 3886 5.869579 AGTTCAGACACCTGTGATGTAATT 58.130 37.500 3.94 0.00 41.16 1.40
3770 3887 5.489792 AGTTCAGACACCTGTGATGTAAT 57.510 39.130 3.94 0.00 41.16 1.89
3771 3888 4.955811 AGTTCAGACACCTGTGATGTAA 57.044 40.909 3.94 0.00 41.16 2.41
3772 3889 4.503123 CCAAGTTCAGACACCTGTGATGTA 60.503 45.833 3.94 0.00 41.16 2.29
3773 3890 3.470709 CAAGTTCAGACACCTGTGATGT 58.529 45.455 3.94 0.00 41.16 3.06
3774 3891 2.810274 CCAAGTTCAGACACCTGTGATG 59.190 50.000 3.94 2.95 41.16 3.07
3775 3892 2.811873 GCCAAGTTCAGACACCTGTGAT 60.812 50.000 3.94 0.00 41.16 3.06
3776 3893 1.475034 GCCAAGTTCAGACACCTGTGA 60.475 52.381 3.94 0.00 41.16 3.58
3777 3894 0.947244 GCCAAGTTCAGACACCTGTG 59.053 55.000 0.00 0.00 41.16 3.66
3778 3895 0.546122 TGCCAAGTTCAGACACCTGT 59.454 50.000 0.00 0.00 41.16 4.00
3779 3896 1.679139 TTGCCAAGTTCAGACACCTG 58.321 50.000 0.00 0.00 41.74 4.00
3780 3897 2.664402 ATTGCCAAGTTCAGACACCT 57.336 45.000 0.00 0.00 0.00 4.00
3781 3898 4.846779 TTTATTGCCAAGTTCAGACACC 57.153 40.909 0.00 0.00 0.00 4.16
3782 3899 5.831997 ACTTTTATTGCCAAGTTCAGACAC 58.168 37.500 0.00 0.00 28.27 3.67
3783 3900 5.592282 TGACTTTTATTGCCAAGTTCAGACA 59.408 36.000 0.00 0.00 33.22 3.41
3784 3901 6.072112 TGACTTTTATTGCCAAGTTCAGAC 57.928 37.500 0.00 0.00 33.22 3.51
3785 3902 5.827797 ACTGACTTTTATTGCCAAGTTCAGA 59.172 36.000 13.60 0.00 34.81 3.27
3786 3903 6.076981 ACTGACTTTTATTGCCAAGTTCAG 57.923 37.500 0.00 0.00 35.95 3.02
3787 3904 6.463995 AACTGACTTTTATTGCCAAGTTCA 57.536 33.333 0.00 0.00 33.22 3.18
3788 3905 6.978080 TCAAACTGACTTTTATTGCCAAGTTC 59.022 34.615 0.00 0.00 33.22 3.01
3789 3906 6.872920 TCAAACTGACTTTTATTGCCAAGTT 58.127 32.000 0.00 0.00 33.22 2.66
3790 3907 6.463995 TCAAACTGACTTTTATTGCCAAGT 57.536 33.333 0.00 0.00 35.88 3.16
3791 3908 6.128742 GCATCAAACTGACTTTTATTGCCAAG 60.129 38.462 0.00 0.00 0.00 3.61
3792 3909 5.695816 GCATCAAACTGACTTTTATTGCCAA 59.304 36.000 0.00 0.00 0.00 4.52
3793 3910 5.010922 AGCATCAAACTGACTTTTATTGCCA 59.989 36.000 0.00 0.00 30.97 4.92
3794 3911 5.473039 AGCATCAAACTGACTTTTATTGCC 58.527 37.500 0.00 0.00 30.97 4.52
3795 3912 8.519492 TTTAGCATCAAACTGACTTTTATTGC 57.481 30.769 0.00 0.00 0.00 3.56
3800 3917 9.382275 ACAAATTTTAGCATCAAACTGACTTTT 57.618 25.926 0.00 0.00 0.00 2.27
3801 3918 8.947055 ACAAATTTTAGCATCAAACTGACTTT 57.053 26.923 0.00 0.00 0.00 2.66
3803 3920 9.683069 CTTACAAATTTTAGCATCAAACTGACT 57.317 29.630 0.00 0.00 0.00 3.41
3804 3921 9.677567 TCTTACAAATTTTAGCATCAAACTGAC 57.322 29.630 0.00 0.00 0.00 3.51
3818 3935 8.581578 ACCGGTTCAATGTATCTTACAAATTTT 58.418 29.630 0.00 0.00 42.76 1.82
3819 3936 8.026607 CACCGGTTCAATGTATCTTACAAATTT 58.973 33.333 2.97 0.00 42.76 1.82
3820 3937 7.392113 TCACCGGTTCAATGTATCTTACAAATT 59.608 33.333 2.97 0.00 42.76 1.82
3821 3938 6.882140 TCACCGGTTCAATGTATCTTACAAAT 59.118 34.615 2.97 0.00 42.76 2.32
3822 3939 6.148150 GTCACCGGTTCAATGTATCTTACAAA 59.852 38.462 2.97 0.00 42.76 2.83
3823 3940 5.640357 GTCACCGGTTCAATGTATCTTACAA 59.360 40.000 2.97 0.00 42.76 2.41
3824 3941 5.172934 GTCACCGGTTCAATGTATCTTACA 58.827 41.667 2.97 0.00 43.80 2.41
3825 3942 5.172934 TGTCACCGGTTCAATGTATCTTAC 58.827 41.667 2.97 0.00 0.00 2.34
3826 3943 5.408880 TGTCACCGGTTCAATGTATCTTA 57.591 39.130 2.97 0.00 0.00 2.10
3827 3944 4.280436 TGTCACCGGTTCAATGTATCTT 57.720 40.909 2.97 0.00 0.00 2.40
3828 3945 3.973206 TGTCACCGGTTCAATGTATCT 57.027 42.857 2.97 0.00 0.00 1.98
3829 3946 5.048991 AGTTTTGTCACCGGTTCAATGTATC 60.049 40.000 18.65 7.29 0.00 2.24
3830 3947 4.825085 AGTTTTGTCACCGGTTCAATGTAT 59.175 37.500 18.65 6.80 0.00 2.29
3831 3948 4.200874 AGTTTTGTCACCGGTTCAATGTA 58.799 39.130 18.65 5.70 0.00 2.29
3832 3949 3.020984 AGTTTTGTCACCGGTTCAATGT 58.979 40.909 18.65 7.42 0.00 2.71
3833 3950 3.708563 AGTTTTGTCACCGGTTCAATG 57.291 42.857 18.65 2.99 0.00 2.82
3834 3951 3.181480 CCAAGTTTTGTCACCGGTTCAAT 60.181 43.478 18.65 5.70 0.00 2.57
3835 3952 2.164624 CCAAGTTTTGTCACCGGTTCAA 59.835 45.455 2.97 11.34 0.00 2.69
3836 3953 1.746220 CCAAGTTTTGTCACCGGTTCA 59.254 47.619 2.97 4.44 0.00 3.18
3837 3954 1.535226 GCCAAGTTTTGTCACCGGTTC 60.535 52.381 2.97 1.13 0.00 3.62
3838 3955 0.458260 GCCAAGTTTTGTCACCGGTT 59.542 50.000 2.97 0.00 0.00 4.44
3839 3956 0.395173 AGCCAAGTTTTGTCACCGGT 60.395 50.000 0.00 0.00 0.00 5.28
3840 3957 0.744281 AAGCCAAGTTTTGTCACCGG 59.256 50.000 0.00 0.00 0.00 5.28
3841 3958 1.535860 CCAAGCCAAGTTTTGTCACCG 60.536 52.381 0.00 0.00 0.00 4.94
3842 3959 1.754226 TCCAAGCCAAGTTTTGTCACC 59.246 47.619 0.00 0.00 0.00 4.02
3843 3960 2.794631 CGTCCAAGCCAAGTTTTGTCAC 60.795 50.000 0.00 0.00 0.00 3.67
3844 3961 1.403679 CGTCCAAGCCAAGTTTTGTCA 59.596 47.619 0.00 0.00 0.00 3.58
3845 3962 1.404035 ACGTCCAAGCCAAGTTTTGTC 59.596 47.619 0.00 0.00 0.00 3.18
3846 3963 1.134175 CACGTCCAAGCCAAGTTTTGT 59.866 47.619 0.00 0.00 0.00 2.83
3847 3964 1.838913 CACGTCCAAGCCAAGTTTTG 58.161 50.000 0.00 0.00 0.00 2.44
3848 3965 0.102300 GCACGTCCAAGCCAAGTTTT 59.898 50.000 0.00 0.00 0.00 2.43
3849 3966 1.034838 TGCACGTCCAAGCCAAGTTT 61.035 50.000 0.00 0.00 0.00 2.66
3850 3967 0.823356 ATGCACGTCCAAGCCAAGTT 60.823 50.000 0.00 0.00 0.00 2.66
3851 3968 1.228245 ATGCACGTCCAAGCCAAGT 60.228 52.632 0.00 0.00 0.00 3.16
3852 3969 0.957395 AGATGCACGTCCAAGCCAAG 60.957 55.000 0.00 0.00 0.00 3.61
3853 3970 0.323302 TAGATGCACGTCCAAGCCAA 59.677 50.000 0.00 0.00 0.00 4.52
3854 3971 0.391130 GTAGATGCACGTCCAAGCCA 60.391 55.000 0.00 0.00 0.00 4.75
3855 3972 1.421410 CGTAGATGCACGTCCAAGCC 61.421 60.000 0.00 0.00 37.16 4.35
3856 3973 0.457853 TCGTAGATGCACGTCCAAGC 60.458 55.000 0.00 0.00 42.51 4.01
3857 3974 1.854743 CATCGTAGATGCACGTCCAAG 59.145 52.381 0.00 0.00 45.12 3.61
3858 3975 1.203758 ACATCGTAGATGCACGTCCAA 59.796 47.619 9.67 0.00 45.12 3.53
3859 3976 0.815095 ACATCGTAGATGCACGTCCA 59.185 50.000 9.67 0.00 45.12 4.02
3860 3977 1.922570 AACATCGTAGATGCACGTCC 58.077 50.000 9.67 0.00 45.12 4.79
3861 3978 4.738252 TGATTAACATCGTAGATGCACGTC 59.262 41.667 9.67 5.02 45.12 4.34
3862 3979 4.678622 TGATTAACATCGTAGATGCACGT 58.321 39.130 9.67 0.00 45.12 4.49
3863 3980 5.175673 ACATGATTAACATCGTAGATGCACG 59.824 40.000 9.67 0.00 45.12 5.34
3864 3981 6.530913 ACATGATTAACATCGTAGATGCAC 57.469 37.500 9.67 0.00 45.12 4.57
3865 3982 7.552458 AAACATGATTAACATCGTAGATGCA 57.448 32.000 9.67 0.00 45.12 3.96
3866 3983 8.338259 AGAAAACATGATTAACATCGTAGATGC 58.662 33.333 9.67 0.00 45.12 3.91
3872 3989 8.273557 GCGTATAGAAAACATGATTAACATCGT 58.726 33.333 0.00 0.00 37.07 3.73
3873 3990 8.272866 TGCGTATAGAAAACATGATTAACATCG 58.727 33.333 0.00 0.00 37.07 3.84
3874 3991 9.370126 GTGCGTATAGAAAACATGATTAACATC 57.630 33.333 0.00 0.00 37.07 3.06
3875 3992 8.888716 TGTGCGTATAGAAAACATGATTAACAT 58.111 29.630 0.00 0.00 40.17 2.71
3876 3993 8.257830 TGTGCGTATAGAAAACATGATTAACA 57.742 30.769 0.00 0.00 0.00 2.41
3877 3994 8.995906 GTTGTGCGTATAGAAAACATGATTAAC 58.004 33.333 0.00 0.00 0.00 2.01
3878 3995 8.722394 TGTTGTGCGTATAGAAAACATGATTAA 58.278 29.630 0.00 0.00 0.00 1.40
3879 3996 8.257830 TGTTGTGCGTATAGAAAACATGATTA 57.742 30.769 0.00 0.00 0.00 1.75
3880 3997 7.139896 TGTTGTGCGTATAGAAAACATGATT 57.860 32.000 0.00 0.00 0.00 2.57
3881 3998 6.735678 TGTTGTGCGTATAGAAAACATGAT 57.264 33.333 0.00 0.00 0.00 2.45
3882 3999 6.735678 ATGTTGTGCGTATAGAAAACATGA 57.264 33.333 0.00 0.00 36.99 3.07
3883 4000 6.779385 CATGTTGTGCGTATAGAAAACATG 57.221 37.500 10.78 10.78 44.67 3.21
3884 4001 6.494893 ACATGTTGTGCGTATAGAAAACAT 57.505 33.333 0.00 0.00 38.43 2.71
3885 4002 5.933187 ACATGTTGTGCGTATAGAAAACA 57.067 34.783 0.00 0.00 32.60 2.83
3886 4003 6.302313 GTCAACATGTTGTGCGTATAGAAAAC 59.698 38.462 31.99 17.38 41.16 2.43
3887 4004 6.367421 GTCAACATGTTGTGCGTATAGAAAA 58.633 36.000 31.99 10.46 41.16 2.29
3888 4005 5.388994 CGTCAACATGTTGTGCGTATAGAAA 60.389 40.000 31.99 10.64 41.16 2.52
3889 4006 4.090786 CGTCAACATGTTGTGCGTATAGAA 59.909 41.667 31.99 11.12 41.16 2.10
3890 4007 3.610677 CGTCAACATGTTGTGCGTATAGA 59.389 43.478 31.99 11.80 41.16 1.98
3891 4008 3.610677 TCGTCAACATGTTGTGCGTATAG 59.389 43.478 33.64 20.97 41.16 1.31
3892 4009 3.576648 TCGTCAACATGTTGTGCGTATA 58.423 40.909 33.64 23.08 41.16 1.47
3893 4010 2.409012 TCGTCAACATGTTGTGCGTAT 58.591 42.857 33.64 7.23 41.16 3.06
3894 4011 1.790043 CTCGTCAACATGTTGTGCGTA 59.210 47.619 33.64 25.57 41.16 4.42
3895 4012 0.581529 CTCGTCAACATGTTGTGCGT 59.418 50.000 33.64 8.46 41.16 5.24
3896 4013 0.110688 CCTCGTCAACATGTTGTGCG 60.111 55.000 31.84 31.84 41.16 5.34
3897 4014 0.385974 GCCTCGTCAACATGTTGTGC 60.386 55.000 31.99 24.69 41.16 4.57
3898 4015 0.110688 CGCCTCGTCAACATGTTGTG 60.111 55.000 31.99 25.65 41.16 3.33
3899 4016 1.841663 GCGCCTCGTCAACATGTTGT 61.842 55.000 31.99 0.84 41.16 3.32
3900 4017 1.154413 GCGCCTCGTCAACATGTTG 60.154 57.895 29.01 29.01 41.71 3.33
3901 4018 2.667318 CGCGCCTCGTCAACATGTT 61.667 57.895 4.92 4.92 0.00 2.71
3902 4019 3.112075 CGCGCCTCGTCAACATGT 61.112 61.111 0.00 0.00 0.00 3.21
3903 4020 4.505217 GCGCGCCTCGTCAACATG 62.505 66.667 23.24 0.00 41.07 3.21
3920 4037 2.034066 AGTCCCACGCCATGTTGG 59.966 61.111 0.00 0.00 41.55 3.77
3921 4038 0.888736 TTGAGTCCCACGCCATGTTG 60.889 55.000 0.00 0.00 0.00 3.33
3922 4039 0.038166 ATTGAGTCCCACGCCATGTT 59.962 50.000 0.00 0.00 0.00 2.71
3923 4040 0.677731 CATTGAGTCCCACGCCATGT 60.678 55.000 0.00 0.00 0.00 3.21
3924 4041 0.677731 ACATTGAGTCCCACGCCATG 60.678 55.000 0.00 0.00 0.00 3.66
3925 4042 0.908910 TACATTGAGTCCCACGCCAT 59.091 50.000 0.00 0.00 0.00 4.40
3926 4043 0.687920 TTACATTGAGTCCCACGCCA 59.312 50.000 0.00 0.00 0.00 5.69
3927 4044 1.338769 ACTTACATTGAGTCCCACGCC 60.339 52.381 0.00 0.00 0.00 5.68
3928 4045 1.732259 CACTTACATTGAGTCCCACGC 59.268 52.381 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.