Multiple sequence alignment - TraesCS6A01G271100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G271100 chr6A 100.000 3623 0 0 1 3623 497728342 497731964 0.000000e+00 6691.0
1 TraesCS6A01G271100 chr6D 94.716 1514 54 10 846 2342 346272490 346270986 0.000000e+00 2329.0
2 TraesCS6A01G271100 chr6D 93.204 412 27 1 1 411 305746573 305746984 4.000000e-169 604.0
3 TraesCS6A01G271100 chr6D 92.701 411 28 2 1 410 450907178 450907587 3.120000e-165 592.0
4 TraesCS6A01G271100 chr6D 89.744 390 18 9 467 855 346272882 346272514 2.530000e-131 479.0
5 TraesCS6A01G271100 chr6D 90.476 63 6 0 409 471 305927208 305927146 2.320000e-12 84.2
6 TraesCS6A01G271100 chr6D 90.476 63 6 0 409 471 450907650 450907588 2.320000e-12 84.2
7 TraesCS6A01G271100 chr6B 93.480 1503 55 13 846 2335 535360954 535362426 0.000000e+00 2193.0
8 TraesCS6A01G271100 chr6B 94.087 389 22 1 467 855 535360543 535360930 1.120000e-164 590.0
9 TraesCS6A01G271100 chr6B 91.469 422 33 3 1 421 649826883 649826464 8.720000e-161 577.0
10 TraesCS6A01G271100 chr3D 94.556 1249 64 3 2377 3623 468757995 468756749 0.000000e+00 1927.0
11 TraesCS6A01G271100 chr3D 92.500 1280 87 7 2348 3623 376166187 376167461 0.000000e+00 1823.0
12 TraesCS6A01G271100 chr3D 92.063 63 5 0 409 471 6289310 6289248 4.980000e-14 89.8
13 TraesCS6A01G271100 chr3D 90.476 63 6 0 409 471 6529277 6529339 2.320000e-12 84.2
14 TraesCS6A01G271100 chr4D 93.594 1280 76 5 2348 3623 362723447 362724724 0.000000e+00 1905.0
15 TraesCS6A01G271100 chr4D 94.075 1249 69 4 2377 3623 37525137 37523892 0.000000e+00 1892.0
16 TraesCS6A01G271100 chr4D 93.184 1247 71 10 2378 3623 387091281 387090048 0.000000e+00 1820.0
17 TraesCS6A01G271100 chr4D 92.421 409 30 1 6 413 102105686 102105278 1.870000e-162 582.0
18 TraesCS6A01G271100 chr4D 92.063 63 5 0 409 471 116522870 116522932 4.980000e-14 89.8
19 TraesCS6A01G271100 chr4D 90.476 63 6 0 409 471 56943247 56943185 2.320000e-12 84.2
20 TraesCS6A01G271100 chr4D 90.476 63 6 0 409 471 442392249 442392187 2.320000e-12 84.2
21 TraesCS6A01G271100 chr7D 93.579 1277 80 2 2348 3623 203332468 203331193 0.000000e+00 1903.0
22 TraesCS6A01G271100 chr7D 93.690 1252 68 8 2377 3623 484338388 484337143 0.000000e+00 1864.0
23 TraesCS6A01G271100 chr1D 94.240 1250 65 6 2378 3623 389542797 389544043 0.000000e+00 1903.0
24 TraesCS6A01G271100 chr1D 90.476 63 6 0 409 471 429021841 429021779 2.320000e-12 84.2
25 TraesCS6A01G271100 chr2D 92.656 1280 85 7 2348 3623 650461968 650463242 0.000000e+00 1834.0
26 TraesCS6A01G271100 chr2D 92.857 406 28 1 6 410 469181945 469182350 4.030000e-164 588.0
27 TraesCS6A01G271100 chr5D 92.944 411 28 1 1 410 369344783 369345193 6.700000e-167 597.0
28 TraesCS6A01G271100 chr4B 92.611 406 29 1 6 410 551785941 551786346 1.870000e-162 582.0
29 TraesCS6A01G271100 chr4B 91.787 414 33 1 1 413 14028096 14027683 3.140000e-160 575.0
30 TraesCS6A01G271100 chr2A 91.951 410 32 1 2 410 504067163 504067572 1.130000e-159 573.0
31 TraesCS6A01G271100 chr2A 78.125 160 25 2 2348 2507 140634224 140634075 3.850000e-15 93.5
32 TraesCS6A01G271100 chr3A 93.333 60 4 0 412 471 71156112 71156053 4.980000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G271100 chr6A 497728342 497731964 3622 False 6691.0 6691 100.0000 1 3623 1 chr6A.!!$F1 3622
1 TraesCS6A01G271100 chr6D 346270986 346272882 1896 True 1404.0 2329 92.2300 467 2342 2 chr6D.!!$R3 1875
2 TraesCS6A01G271100 chr6B 535360543 535362426 1883 False 1391.5 2193 93.7835 467 2335 2 chr6B.!!$F1 1868
3 TraesCS6A01G271100 chr3D 468756749 468757995 1246 True 1927.0 1927 94.5560 2377 3623 1 chr3D.!!$R2 1246
4 TraesCS6A01G271100 chr3D 376166187 376167461 1274 False 1823.0 1823 92.5000 2348 3623 1 chr3D.!!$F2 1275
5 TraesCS6A01G271100 chr4D 362723447 362724724 1277 False 1905.0 1905 93.5940 2348 3623 1 chr4D.!!$F2 1275
6 TraesCS6A01G271100 chr4D 37523892 37525137 1245 True 1892.0 1892 94.0750 2377 3623 1 chr4D.!!$R1 1246
7 TraesCS6A01G271100 chr4D 387090048 387091281 1233 True 1820.0 1820 93.1840 2378 3623 1 chr4D.!!$R4 1245
8 TraesCS6A01G271100 chr7D 203331193 203332468 1275 True 1903.0 1903 93.5790 2348 3623 1 chr7D.!!$R1 1275
9 TraesCS6A01G271100 chr7D 484337143 484338388 1245 True 1864.0 1864 93.6900 2377 3623 1 chr7D.!!$R2 1246
10 TraesCS6A01G271100 chr1D 389542797 389544043 1246 False 1903.0 1903 94.2400 2378 3623 1 chr1D.!!$F1 1245
11 TraesCS6A01G271100 chr2D 650461968 650463242 1274 False 1834.0 1834 92.6560 2348 3623 1 chr2D.!!$F2 1275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.034896 CGGAAGTGTGCTGGTAACCT 59.965 55.0 0.00 0.00 0.00 3.50 F
357 358 0.102844 CAACCAAACACCAGGCAGTG 59.897 55.0 6.18 6.18 43.65 3.66 F
413 414 0.179103 ACCAAACAACTTGCAGCTGC 60.179 50.0 31.89 31.89 42.50 5.25 F
2346 2408 0.165944 GGTTTGTGAACTCCATCGCG 59.834 55.0 0.00 0.00 36.03 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1273 1318 0.248784 GCCTCTCGCCAATTGCAATC 60.249 55.0 13.38 0.00 41.33 2.67 R
2343 2405 0.451463 ATAAAACAAACGTCCGCGCG 60.451 50.0 25.67 25.67 42.83 6.86 R
2375 2437 0.252012 CCCATTGCCCTACCCAAACA 60.252 55.0 0.00 0.00 0.00 2.83 R
3276 3351 2.296471 GAGAGGACTGAAGACGACCAAA 59.704 50.0 0.00 0.00 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.374758 CGACAATGGCATTGAGGTCG 59.625 55.000 38.83 32.04 42.83 4.79
20 21 1.453155 GACAATGGCATTGAGGTCGT 58.547 50.000 38.83 20.48 42.83 4.34
21 22 1.398390 GACAATGGCATTGAGGTCGTC 59.602 52.381 38.83 23.86 42.83 4.20
22 23 1.271325 ACAATGGCATTGAGGTCGTCA 60.271 47.619 38.83 0.00 42.83 4.35
30 31 1.295792 TTGAGGTCGTCAACAAGTGC 58.704 50.000 3.85 0.00 40.45 4.40
31 32 0.874175 TGAGGTCGTCAACAAGTGCG 60.874 55.000 0.00 0.00 29.64 5.34
32 33 1.557443 GAGGTCGTCAACAAGTGCGG 61.557 60.000 0.00 0.00 0.00 5.69
33 34 1.593209 GGTCGTCAACAAGTGCGGA 60.593 57.895 0.00 0.00 0.00 5.54
34 35 1.155424 GGTCGTCAACAAGTGCGGAA 61.155 55.000 0.00 0.00 0.00 4.30
35 36 0.232303 GTCGTCAACAAGTGCGGAAG 59.768 55.000 0.00 0.00 0.00 3.46
47 48 3.479269 CGGAAGCACGACGAAGGC 61.479 66.667 0.00 2.02 35.47 4.35
48 49 2.048127 GGAAGCACGACGAAGGCT 60.048 61.111 0.00 4.64 40.14 4.58
50 51 3.952811 AAGCACGACGAAGGCTTC 58.047 55.556 17.33 17.33 43.97 3.86
63 64 2.359230 GCTTCGCTGCCAAGGACT 60.359 61.111 9.03 0.00 0.00 3.85
64 65 1.079127 GCTTCGCTGCCAAGGACTA 60.079 57.895 9.03 0.00 0.00 2.59
65 66 1.086634 GCTTCGCTGCCAAGGACTAG 61.087 60.000 9.03 0.00 0.00 2.57
66 67 0.460987 CTTCGCTGCCAAGGACTAGG 60.461 60.000 0.00 0.00 0.00 3.02
67 68 1.899437 TTCGCTGCCAAGGACTAGGG 61.899 60.000 0.00 0.00 0.00 3.53
71 72 4.176752 GCCAAGGACTAGGGCCGG 62.177 72.222 0.00 0.00 41.90 6.13
72 73 3.480133 CCAAGGACTAGGGCCGGG 61.480 72.222 2.18 0.00 0.00 5.73
73 74 3.480133 CAAGGACTAGGGCCGGGG 61.480 72.222 2.18 0.00 0.00 5.73
91 92 2.983907 GGCACCTCCTTCCTAAGTAC 57.016 55.000 0.00 0.00 0.00 2.73
92 93 2.468915 GGCACCTCCTTCCTAAGTACT 58.531 52.381 0.00 0.00 0.00 2.73
93 94 3.639952 GGCACCTCCTTCCTAAGTACTA 58.360 50.000 0.00 0.00 0.00 1.82
94 95 4.224762 GGCACCTCCTTCCTAAGTACTAT 58.775 47.826 0.00 0.00 0.00 2.12
95 96 4.281435 GGCACCTCCTTCCTAAGTACTATC 59.719 50.000 0.00 0.00 0.00 2.08
96 97 4.023021 GCACCTCCTTCCTAAGTACTATCG 60.023 50.000 0.00 0.00 0.00 2.92
97 98 5.374921 CACCTCCTTCCTAAGTACTATCGA 58.625 45.833 0.00 0.00 0.00 3.59
98 99 5.470777 CACCTCCTTCCTAAGTACTATCGAG 59.529 48.000 0.00 0.00 0.00 4.04
99 100 5.132480 ACCTCCTTCCTAAGTACTATCGAGT 59.868 44.000 0.00 0.00 39.92 4.18
100 101 5.702209 CCTCCTTCCTAAGTACTATCGAGTC 59.298 48.000 0.00 0.00 37.10 3.36
101 102 6.464749 CCTCCTTCCTAAGTACTATCGAGTCT 60.465 46.154 0.00 0.00 37.10 3.24
102 103 6.289834 TCCTTCCTAAGTACTATCGAGTCTG 58.710 44.000 0.00 0.00 37.10 3.51
103 104 5.049267 CCTTCCTAAGTACTATCGAGTCTGC 60.049 48.000 0.00 0.00 37.10 4.26
104 105 5.293319 TCCTAAGTACTATCGAGTCTGCT 57.707 43.478 0.00 0.00 37.10 4.24
105 106 5.682659 TCCTAAGTACTATCGAGTCTGCTT 58.317 41.667 0.00 0.00 37.10 3.91
106 107 6.120905 TCCTAAGTACTATCGAGTCTGCTTT 58.879 40.000 0.00 0.00 37.10 3.51
107 108 6.038382 TCCTAAGTACTATCGAGTCTGCTTTG 59.962 42.308 0.00 0.00 37.10 2.77
108 109 5.899120 AAGTACTATCGAGTCTGCTTTGA 57.101 39.130 0.00 0.00 37.10 2.69
109 110 5.899120 AGTACTATCGAGTCTGCTTTGAA 57.101 39.130 0.00 0.00 37.10 2.69
110 111 5.642686 AGTACTATCGAGTCTGCTTTGAAC 58.357 41.667 0.00 0.00 37.10 3.18
111 112 4.792521 ACTATCGAGTCTGCTTTGAACT 57.207 40.909 0.00 0.00 0.00 3.01
112 113 4.489810 ACTATCGAGTCTGCTTTGAACTG 58.510 43.478 0.00 0.00 0.00 3.16
113 114 2.890808 TCGAGTCTGCTTTGAACTGT 57.109 45.000 0.00 0.00 0.00 3.55
114 115 3.179443 TCGAGTCTGCTTTGAACTGTT 57.821 42.857 0.00 0.00 0.00 3.16
115 116 3.531538 TCGAGTCTGCTTTGAACTGTTT 58.468 40.909 0.00 0.00 0.00 2.83
116 117 4.689071 TCGAGTCTGCTTTGAACTGTTTA 58.311 39.130 0.00 0.00 0.00 2.01
117 118 5.297547 TCGAGTCTGCTTTGAACTGTTTAT 58.702 37.500 0.00 0.00 0.00 1.40
118 119 5.177511 TCGAGTCTGCTTTGAACTGTTTATG 59.822 40.000 0.00 0.00 0.00 1.90
119 120 5.177511 CGAGTCTGCTTTGAACTGTTTATGA 59.822 40.000 0.00 0.00 0.00 2.15
120 121 6.128445 CGAGTCTGCTTTGAACTGTTTATGAT 60.128 38.462 0.00 0.00 0.00 2.45
121 122 7.516198 AGTCTGCTTTGAACTGTTTATGATT 57.484 32.000 0.00 0.00 0.00 2.57
122 123 7.945134 AGTCTGCTTTGAACTGTTTATGATTT 58.055 30.769 0.00 0.00 0.00 2.17
123 124 9.066892 AGTCTGCTTTGAACTGTTTATGATTTA 57.933 29.630 0.00 0.00 0.00 1.40
124 125 9.846248 GTCTGCTTTGAACTGTTTATGATTTAT 57.154 29.630 0.00 0.00 0.00 1.40
125 126 9.844790 TCTGCTTTGAACTGTTTATGATTTATG 57.155 29.630 0.00 0.00 0.00 1.90
126 127 8.464770 TGCTTTGAACTGTTTATGATTTATGC 57.535 30.769 0.00 0.00 0.00 3.14
127 128 7.273164 TGCTTTGAACTGTTTATGATTTATGCG 59.727 33.333 0.00 0.00 0.00 4.73
128 129 7.273381 GCTTTGAACTGTTTATGATTTATGCGT 59.727 33.333 0.00 0.00 0.00 5.24
129 130 9.128107 CTTTGAACTGTTTATGATTTATGCGTT 57.872 29.630 0.00 0.00 0.00 4.84
130 131 8.446489 TTGAACTGTTTATGATTTATGCGTTG 57.554 30.769 0.00 0.00 0.00 4.10
131 132 7.811653 TGAACTGTTTATGATTTATGCGTTGA 58.188 30.769 0.00 0.00 0.00 3.18
132 133 8.293157 TGAACTGTTTATGATTTATGCGTTGAA 58.707 29.630 0.00 0.00 0.00 2.69
133 134 8.447787 AACTGTTTATGATTTATGCGTTGAAC 57.552 30.769 0.00 0.00 0.00 3.18
134 135 7.816640 ACTGTTTATGATTTATGCGTTGAACT 58.183 30.769 0.00 0.00 0.00 3.01
135 136 7.750458 ACTGTTTATGATTTATGCGTTGAACTG 59.250 33.333 0.00 0.00 0.00 3.16
136 137 7.589395 TGTTTATGATTTATGCGTTGAACTGT 58.411 30.769 0.00 0.00 0.00 3.55
137 138 8.079203 TGTTTATGATTTATGCGTTGAACTGTT 58.921 29.630 0.00 0.00 0.00 3.16
138 139 9.549509 GTTTATGATTTATGCGTTGAACTGTTA 57.450 29.630 0.00 0.00 0.00 2.41
140 141 9.715123 TTATGATTTATGCGTTGAACTGTTATG 57.285 29.630 0.00 0.00 0.00 1.90
141 142 7.371126 TGATTTATGCGTTGAACTGTTATGA 57.629 32.000 0.00 0.00 0.00 2.15
142 143 7.811653 TGATTTATGCGTTGAACTGTTATGAA 58.188 30.769 0.00 0.00 0.00 2.57
143 144 7.962373 TGATTTATGCGTTGAACTGTTATGAAG 59.038 33.333 0.00 0.00 0.00 3.02
144 145 6.795098 TTATGCGTTGAACTGTTATGAAGT 57.205 33.333 0.00 0.00 0.00 3.01
145 146 4.466567 TGCGTTGAACTGTTATGAAGTG 57.533 40.909 0.00 0.00 0.00 3.16
146 147 3.874543 TGCGTTGAACTGTTATGAAGTGT 59.125 39.130 0.00 0.00 0.00 3.55
147 148 4.211389 GCGTTGAACTGTTATGAAGTGTG 58.789 43.478 0.00 0.00 0.00 3.82
148 149 4.772434 CGTTGAACTGTTATGAAGTGTGG 58.228 43.478 0.00 0.00 0.00 4.17
149 150 4.272504 CGTTGAACTGTTATGAAGTGTGGT 59.727 41.667 0.00 0.00 0.00 4.16
150 151 5.464057 CGTTGAACTGTTATGAAGTGTGGTA 59.536 40.000 0.00 0.00 0.00 3.25
151 152 6.563381 CGTTGAACTGTTATGAAGTGTGGTAC 60.563 42.308 0.00 0.00 0.00 3.34
152 153 6.169557 TGAACTGTTATGAAGTGTGGTACT 57.830 37.500 0.00 0.00 42.89 2.73
153 154 5.989168 TGAACTGTTATGAAGTGTGGTACTG 59.011 40.000 0.00 0.00 40.26 2.74
154 155 4.315803 ACTGTTATGAAGTGTGGTACTGC 58.684 43.478 0.00 0.00 40.26 4.40
155 156 4.040461 ACTGTTATGAAGTGTGGTACTGCT 59.960 41.667 0.00 0.00 40.26 4.24
156 157 4.968259 TGTTATGAAGTGTGGTACTGCTT 58.032 39.130 0.00 0.00 40.26 3.91
157 158 6.104146 TGTTATGAAGTGTGGTACTGCTTA 57.896 37.500 0.00 0.00 40.26 3.09
158 159 6.707290 TGTTATGAAGTGTGGTACTGCTTAT 58.293 36.000 0.00 0.00 40.26 1.73
159 160 6.816640 TGTTATGAAGTGTGGTACTGCTTATC 59.183 38.462 0.00 0.00 40.26 1.75
160 161 5.683876 ATGAAGTGTGGTACTGCTTATCT 57.316 39.130 0.00 0.00 40.26 1.98
161 162 4.820897 TGAAGTGTGGTACTGCTTATCTG 58.179 43.478 0.00 0.00 40.26 2.90
162 163 4.526650 TGAAGTGTGGTACTGCTTATCTGA 59.473 41.667 0.00 0.00 40.26 3.27
163 164 5.011635 TGAAGTGTGGTACTGCTTATCTGAA 59.988 40.000 0.00 0.00 40.26 3.02
164 165 5.683876 AGTGTGGTACTGCTTATCTGAAT 57.316 39.130 0.00 0.00 38.49 2.57
165 166 6.054860 AGTGTGGTACTGCTTATCTGAATT 57.945 37.500 0.00 0.00 38.49 2.17
166 167 7.182817 AGTGTGGTACTGCTTATCTGAATTA 57.817 36.000 0.00 0.00 38.49 1.40
167 168 7.796054 AGTGTGGTACTGCTTATCTGAATTAT 58.204 34.615 0.00 0.00 38.49 1.28
168 169 7.712639 AGTGTGGTACTGCTTATCTGAATTATG 59.287 37.037 0.00 0.00 38.49 1.90
169 170 6.483307 TGTGGTACTGCTTATCTGAATTATGC 59.517 38.462 0.00 0.00 0.00 3.14
170 171 6.708054 GTGGTACTGCTTATCTGAATTATGCT 59.292 38.462 0.00 0.00 0.00 3.79
171 172 6.707608 TGGTACTGCTTATCTGAATTATGCTG 59.292 38.462 0.00 0.00 0.00 4.41
172 173 6.708054 GGTACTGCTTATCTGAATTATGCTGT 59.292 38.462 10.95 10.95 35.81 4.40
173 174 7.227512 GGTACTGCTTATCTGAATTATGCTGTT 59.772 37.037 11.24 1.94 34.19 3.16
174 175 9.261180 GTACTGCTTATCTGAATTATGCTGTTA 57.739 33.333 11.24 1.34 34.19 2.41
175 176 8.737168 ACTGCTTATCTGAATTATGCTGTTAA 57.263 30.769 0.00 0.00 0.00 2.01
176 177 9.177608 ACTGCTTATCTGAATTATGCTGTTAAA 57.822 29.630 0.00 0.00 0.00 1.52
186 187 9.734620 TGAATTATGCTGTTAAATAGTTGATGC 57.265 29.630 0.00 0.00 0.00 3.91
187 188 9.956720 GAATTATGCTGTTAAATAGTTGATGCT 57.043 29.630 0.00 0.00 0.00 3.79
188 189 9.956720 AATTATGCTGTTAAATAGTTGATGCTC 57.043 29.630 0.00 0.00 0.00 4.26
189 190 8.737168 TTATGCTGTTAAATAGTTGATGCTCT 57.263 30.769 0.00 0.00 0.00 4.09
190 191 6.426980 TGCTGTTAAATAGTTGATGCTCTG 57.573 37.500 0.00 0.00 0.00 3.35
191 192 5.939883 TGCTGTTAAATAGTTGATGCTCTGT 59.060 36.000 0.00 0.00 0.00 3.41
192 193 6.430925 TGCTGTTAAATAGTTGATGCTCTGTT 59.569 34.615 0.00 0.00 0.00 3.16
193 194 7.040478 TGCTGTTAAATAGTTGATGCTCTGTTT 60.040 33.333 0.00 0.00 0.00 2.83
194 195 8.450964 GCTGTTAAATAGTTGATGCTCTGTTTA 58.549 33.333 0.00 0.00 0.00 2.01
197 198 9.226345 GTTAAATAGTTGATGCTCTGTTTATGC 57.774 33.333 0.00 0.00 31.26 3.14
198 199 7.636150 AAATAGTTGATGCTCTGTTTATGCT 57.364 32.000 0.00 0.00 0.00 3.79
199 200 6.857777 ATAGTTGATGCTCTGTTTATGCTC 57.142 37.500 0.00 0.00 0.00 4.26
200 201 4.841422 AGTTGATGCTCTGTTTATGCTCT 58.159 39.130 0.00 0.00 0.00 4.09
201 202 4.634883 AGTTGATGCTCTGTTTATGCTCTG 59.365 41.667 0.00 0.00 0.00 3.35
202 203 2.941064 TGATGCTCTGTTTATGCTCTGC 59.059 45.455 0.00 0.00 0.00 4.26
203 204 2.775911 TGCTCTGTTTATGCTCTGCT 57.224 45.000 0.00 0.00 0.00 4.24
204 205 2.625737 TGCTCTGTTTATGCTCTGCTC 58.374 47.619 0.00 0.00 0.00 4.26
205 206 2.235650 TGCTCTGTTTATGCTCTGCTCT 59.764 45.455 0.00 0.00 0.00 4.09
206 207 2.608546 GCTCTGTTTATGCTCTGCTCTG 59.391 50.000 0.00 0.00 0.00 3.35
207 208 2.608546 CTCTGTTTATGCTCTGCTCTGC 59.391 50.000 0.00 0.00 0.00 4.26
208 209 2.235650 TCTGTTTATGCTCTGCTCTGCT 59.764 45.455 0.00 0.00 0.00 4.24
209 210 3.008330 CTGTTTATGCTCTGCTCTGCTT 58.992 45.455 0.00 0.00 0.00 3.91
210 211 4.081476 TCTGTTTATGCTCTGCTCTGCTTA 60.081 41.667 0.00 0.00 0.00 3.09
211 212 4.774124 TGTTTATGCTCTGCTCTGCTTAT 58.226 39.130 0.00 0.00 0.00 1.73
212 213 4.573607 TGTTTATGCTCTGCTCTGCTTATG 59.426 41.667 0.00 0.00 0.00 1.90
213 214 4.677673 TTATGCTCTGCTCTGCTTATGA 57.322 40.909 0.00 0.00 0.00 2.15
214 215 3.773418 ATGCTCTGCTCTGCTTATGAT 57.227 42.857 0.00 0.00 0.00 2.45
215 216 2.835027 TGCTCTGCTCTGCTTATGATG 58.165 47.619 0.00 0.00 0.00 3.07
216 217 2.169978 TGCTCTGCTCTGCTTATGATGT 59.830 45.455 0.00 0.00 0.00 3.06
217 218 2.544686 GCTCTGCTCTGCTTATGATGTG 59.455 50.000 0.00 0.00 0.00 3.21
218 219 3.794717 CTCTGCTCTGCTTATGATGTGT 58.205 45.455 0.00 0.00 0.00 3.72
219 220 3.528532 TCTGCTCTGCTTATGATGTGTG 58.471 45.455 0.00 0.00 0.00 3.82
220 221 2.011947 TGCTCTGCTTATGATGTGTGC 58.988 47.619 0.00 0.00 0.00 4.57
221 222 2.286872 GCTCTGCTTATGATGTGTGCT 58.713 47.619 0.00 0.00 0.00 4.40
222 223 3.118665 TGCTCTGCTTATGATGTGTGCTA 60.119 43.478 0.00 0.00 0.00 3.49
223 224 3.247173 GCTCTGCTTATGATGTGTGCTAC 59.753 47.826 0.00 0.00 0.00 3.58
224 225 4.436332 CTCTGCTTATGATGTGTGCTACA 58.564 43.478 0.00 0.00 44.87 2.74
233 234 0.950836 TGTGTGCTACATGGTTGTGC 59.049 50.000 0.00 0.00 36.53 4.57
234 235 0.110238 GTGTGCTACATGGTTGTGCG 60.110 55.000 0.00 0.00 36.53 5.34
235 236 1.233950 TGTGCTACATGGTTGTGCGG 61.234 55.000 0.00 0.00 36.53 5.69
236 237 0.953471 GTGCTACATGGTTGTGCGGA 60.953 55.000 0.00 0.00 36.53 5.54
237 238 0.250510 TGCTACATGGTTGTGCGGAA 60.251 50.000 0.00 0.00 36.53 4.30
238 239 0.447801 GCTACATGGTTGTGCGGAAG 59.552 55.000 0.00 0.00 36.53 3.46
239 240 1.808411 CTACATGGTTGTGCGGAAGT 58.192 50.000 0.00 0.00 36.53 3.01
240 241 1.464608 CTACATGGTTGTGCGGAAGTG 59.535 52.381 0.00 0.00 36.53 3.16
241 242 0.465460 ACATGGTTGTGCGGAAGTGT 60.465 50.000 0.00 0.00 33.85 3.55
242 243 0.040157 CATGGTTGTGCGGAAGTGTG 60.040 55.000 0.00 0.00 0.00 3.82
243 244 1.795170 ATGGTTGTGCGGAAGTGTGC 61.795 55.000 0.00 0.00 0.00 4.57
244 245 2.186826 GGTTGTGCGGAAGTGTGCT 61.187 57.895 0.00 0.00 0.00 4.40
245 246 1.009675 GTTGTGCGGAAGTGTGCTG 60.010 57.895 0.00 0.00 0.00 4.41
246 247 2.186160 TTGTGCGGAAGTGTGCTGG 61.186 57.895 0.00 0.00 0.00 4.85
247 248 2.591715 GTGCGGAAGTGTGCTGGT 60.592 61.111 0.00 0.00 0.00 4.00
248 249 1.301401 GTGCGGAAGTGTGCTGGTA 60.301 57.895 0.00 0.00 0.00 3.25
249 250 0.882927 GTGCGGAAGTGTGCTGGTAA 60.883 55.000 0.00 0.00 0.00 2.85
250 251 0.882927 TGCGGAAGTGTGCTGGTAAC 60.883 55.000 0.00 0.00 0.00 2.50
251 252 1.574702 GCGGAAGTGTGCTGGTAACC 61.575 60.000 0.00 0.00 0.00 2.85
252 253 0.034896 CGGAAGTGTGCTGGTAACCT 59.965 55.000 0.00 0.00 0.00 3.50
253 254 1.809684 GGAAGTGTGCTGGTAACCTC 58.190 55.000 0.00 0.00 0.00 3.85
254 255 1.071699 GGAAGTGTGCTGGTAACCTCA 59.928 52.381 0.00 0.00 0.00 3.86
255 256 2.143925 GAAGTGTGCTGGTAACCTCAC 58.856 52.381 0.00 0.00 0.00 3.51
256 257 0.396811 AGTGTGCTGGTAACCTCACC 59.603 55.000 0.00 0.00 39.20 4.02
257 258 0.107831 GTGTGCTGGTAACCTCACCA 59.892 55.000 0.00 0.00 46.46 4.17
264 265 1.626825 TGGTAACCTCACCAACTAGCC 59.373 52.381 0.00 0.00 45.65 3.93
265 266 1.626825 GGTAACCTCACCAACTAGCCA 59.373 52.381 0.00 0.00 38.55 4.75
266 267 2.039348 GGTAACCTCACCAACTAGCCAA 59.961 50.000 0.00 0.00 38.55 4.52
267 268 3.497227 GGTAACCTCACCAACTAGCCAAA 60.497 47.826 0.00 0.00 38.55 3.28
268 269 3.306472 AACCTCACCAACTAGCCAAAA 57.694 42.857 0.00 0.00 0.00 2.44
269 270 3.306472 ACCTCACCAACTAGCCAAAAA 57.694 42.857 0.00 0.00 0.00 1.94
270 271 3.222603 ACCTCACCAACTAGCCAAAAAG 58.777 45.455 0.00 0.00 0.00 2.27
271 272 2.558359 CCTCACCAACTAGCCAAAAAGG 59.442 50.000 0.00 0.00 41.84 3.11
272 273 3.222603 CTCACCAACTAGCCAAAAAGGT 58.777 45.455 0.00 0.00 40.61 3.50
273 274 3.636764 CTCACCAACTAGCCAAAAAGGTT 59.363 43.478 0.00 0.00 40.61 3.50
274 275 4.794334 TCACCAACTAGCCAAAAAGGTTA 58.206 39.130 0.00 0.00 40.61 2.85
275 276 4.581409 TCACCAACTAGCCAAAAAGGTTAC 59.419 41.667 0.00 0.00 40.61 2.50
276 277 3.893200 ACCAACTAGCCAAAAAGGTTACC 59.107 43.478 0.00 0.00 40.61 2.85
277 278 3.892588 CCAACTAGCCAAAAAGGTTACCA 59.107 43.478 3.51 0.00 40.61 3.25
278 279 4.261867 CCAACTAGCCAAAAAGGTTACCAC 60.262 45.833 3.51 0.00 40.61 4.16
279 280 4.173290 ACTAGCCAAAAAGGTTACCACA 57.827 40.909 3.51 0.00 40.61 4.17
280 281 3.887110 ACTAGCCAAAAAGGTTACCACAC 59.113 43.478 3.51 0.00 40.61 3.82
281 282 2.741145 AGCCAAAAAGGTTACCACACA 58.259 42.857 3.51 0.00 40.61 3.72
282 283 2.429250 AGCCAAAAAGGTTACCACACAC 59.571 45.455 3.51 0.00 40.61 3.82
283 284 2.482316 GCCAAAAAGGTTACCACACACC 60.482 50.000 3.51 0.00 40.61 4.16
284 285 2.761208 CCAAAAAGGTTACCACACACCA 59.239 45.455 3.51 0.00 35.25 4.17
285 286 3.181480 CCAAAAAGGTTACCACACACCAG 60.181 47.826 3.51 0.00 35.25 4.00
286 287 3.655615 AAAAGGTTACCACACACCAGA 57.344 42.857 3.51 0.00 35.25 3.86
287 288 2.632987 AAGGTTACCACACACCAGAC 57.367 50.000 3.51 0.00 35.25 3.51
288 289 0.391597 AGGTTACCACACACCAGACG 59.608 55.000 3.51 0.00 35.25 4.18
289 290 0.105408 GGTTACCACACACCAGACGT 59.895 55.000 0.00 0.00 32.74 4.34
290 291 1.473788 GGTTACCACACACCAGACGTT 60.474 52.381 0.00 0.00 32.74 3.99
291 292 1.595794 GTTACCACACACCAGACGTTG 59.404 52.381 0.00 0.00 0.00 4.10
292 293 0.531090 TACCACACACCAGACGTTGC 60.531 55.000 0.00 0.00 0.00 4.17
293 294 1.817520 CCACACACCAGACGTTGCA 60.818 57.895 0.00 0.00 0.00 4.08
294 295 1.165907 CCACACACCAGACGTTGCAT 61.166 55.000 0.00 0.00 0.00 3.96
295 296 1.507562 CACACACCAGACGTTGCATA 58.492 50.000 0.00 0.00 0.00 3.14
296 297 1.194547 CACACACCAGACGTTGCATAC 59.805 52.381 0.00 0.00 0.00 2.39
297 298 1.202592 ACACACCAGACGTTGCATACA 60.203 47.619 0.00 0.00 0.00 2.29
298 299 1.870402 CACACCAGACGTTGCATACAA 59.130 47.619 0.00 0.00 0.00 2.41
311 312 4.433186 TGCATACAACCAAACACTATGC 57.567 40.909 0.00 0.00 40.01 3.14
312 313 3.192422 TGCATACAACCAAACACTATGCC 59.808 43.478 0.00 0.00 39.21 4.40
313 314 3.443681 GCATACAACCAAACACTATGCCT 59.556 43.478 0.00 0.00 35.61 4.75
314 315 4.082245 GCATACAACCAAACACTATGCCTT 60.082 41.667 0.00 0.00 35.61 4.35
315 316 5.401550 CATACAACCAAACACTATGCCTTG 58.598 41.667 0.00 0.00 0.00 3.61
316 317 2.627699 ACAACCAAACACTATGCCTTGG 59.372 45.455 8.15 8.15 38.74 3.61
317 318 1.923356 ACCAAACACTATGCCTTGGG 58.077 50.000 12.47 0.00 37.74 4.12
327 328 4.181051 GCCTTGGGCTTGTTCACT 57.819 55.556 0.80 0.00 46.69 3.41
328 329 3.339547 GCCTTGGGCTTGTTCACTA 57.660 52.632 0.80 0.00 46.69 2.74
329 330 1.616159 GCCTTGGGCTTGTTCACTAA 58.384 50.000 0.80 0.00 46.69 2.24
330 331 1.269723 GCCTTGGGCTTGTTCACTAAC 59.730 52.381 0.80 0.00 46.69 2.34
331 332 2.582052 CCTTGGGCTTGTTCACTAACA 58.418 47.619 0.00 0.00 43.85 2.41
332 333 3.157087 CCTTGGGCTTGTTCACTAACAT 58.843 45.455 0.00 0.00 44.85 2.71
333 334 4.331968 CCTTGGGCTTGTTCACTAACATA 58.668 43.478 0.00 0.00 44.85 2.29
334 335 4.156008 CCTTGGGCTTGTTCACTAACATAC 59.844 45.833 0.00 0.00 44.85 2.39
335 336 4.359434 TGGGCTTGTTCACTAACATACA 57.641 40.909 0.00 0.00 44.85 2.29
336 337 4.720046 TGGGCTTGTTCACTAACATACAA 58.280 39.130 0.00 0.00 44.85 2.41
337 338 5.133941 TGGGCTTGTTCACTAACATACAAA 58.866 37.500 0.00 0.00 44.85 2.83
338 339 5.009210 TGGGCTTGTTCACTAACATACAAAC 59.991 40.000 0.00 0.00 44.85 2.93
339 340 5.009210 GGGCTTGTTCACTAACATACAAACA 59.991 40.000 0.00 0.00 44.85 2.83
340 341 6.460399 GGGCTTGTTCACTAACATACAAACAA 60.460 38.462 0.00 0.00 44.85 2.83
341 342 6.416750 GGCTTGTTCACTAACATACAAACAAC 59.583 38.462 0.00 0.00 44.85 3.32
342 343 6.416750 GCTTGTTCACTAACATACAAACAACC 59.583 38.462 0.00 0.00 44.85 3.77
343 344 7.392494 TTGTTCACTAACATACAAACAACCA 57.608 32.000 0.00 0.00 44.85 3.67
344 345 7.392494 TGTTCACTAACATACAAACAACCAA 57.608 32.000 0.00 0.00 40.69 3.67
345 346 7.827701 TGTTCACTAACATACAAACAACCAAA 58.172 30.769 0.00 0.00 40.69 3.28
346 347 7.755822 TGTTCACTAACATACAAACAACCAAAC 59.244 33.333 0.00 0.00 40.69 2.93
347 348 7.392494 TCACTAACATACAAACAACCAAACA 57.608 32.000 0.00 0.00 0.00 2.83
348 349 7.251994 TCACTAACATACAAACAACCAAACAC 58.748 34.615 0.00 0.00 0.00 3.32
349 350 6.474102 CACTAACATACAAACAACCAAACACC 59.526 38.462 0.00 0.00 0.00 4.16
350 351 5.407407 AACATACAAACAACCAAACACCA 57.593 34.783 0.00 0.00 0.00 4.17
351 352 5.004922 ACATACAAACAACCAAACACCAG 57.995 39.130 0.00 0.00 0.00 4.00
352 353 4.142049 ACATACAAACAACCAAACACCAGG 60.142 41.667 0.00 0.00 0.00 4.45
353 354 1.066502 ACAAACAACCAAACACCAGGC 60.067 47.619 0.00 0.00 0.00 4.85
354 355 1.066573 CAAACAACCAAACACCAGGCA 60.067 47.619 0.00 0.00 0.00 4.75
355 356 0.823460 AACAACCAAACACCAGGCAG 59.177 50.000 0.00 0.00 0.00 4.85
356 357 0.324275 ACAACCAAACACCAGGCAGT 60.324 50.000 0.00 0.00 0.00 4.40
357 358 0.102844 CAACCAAACACCAGGCAGTG 59.897 55.000 6.18 6.18 43.65 3.66
362 363 3.006677 ACACCAGGCAGTGTGGTT 58.993 55.556 11.91 0.00 46.73 3.67
363 364 1.152963 ACACCAGGCAGTGTGGTTC 60.153 57.895 11.91 0.00 46.73 3.62
364 365 1.152984 CACCAGGCAGTGTGGTTCA 60.153 57.895 2.70 0.00 46.73 3.18
365 366 1.149174 ACCAGGCAGTGTGGTTCAG 59.851 57.895 0.00 0.00 46.73 3.02
366 367 2.263741 CCAGGCAGTGTGGTTCAGC 61.264 63.158 0.00 0.00 0.00 4.26
367 368 2.113986 AGGCAGTGTGGTTCAGCC 59.886 61.111 0.00 0.00 45.54 4.85
368 369 2.985847 GGCAGTGTGGTTCAGCCC 60.986 66.667 0.00 0.00 39.42 5.19
369 370 2.203337 GCAGTGTGGTTCAGCCCA 60.203 61.111 0.00 0.00 36.04 5.36
370 371 1.827789 GCAGTGTGGTTCAGCCCAA 60.828 57.895 0.00 0.00 35.92 4.12
371 372 1.181098 GCAGTGTGGTTCAGCCCAAT 61.181 55.000 0.00 0.00 35.92 3.16
372 373 0.883833 CAGTGTGGTTCAGCCCAATC 59.116 55.000 0.00 0.00 35.92 2.67
373 374 0.606401 AGTGTGGTTCAGCCCAATCG 60.606 55.000 0.00 0.00 35.92 3.34
374 375 1.303236 TGTGGTTCAGCCCAATCGG 60.303 57.895 0.00 0.00 35.92 4.18
393 394 4.806936 CAAGAGGCCTTGCAGACA 57.193 55.556 6.77 0.00 42.72 3.41
394 395 3.025924 CAAGAGGCCTTGCAGACAA 57.974 52.632 6.77 0.00 42.72 3.18
395 396 0.595095 CAAGAGGCCTTGCAGACAAC 59.405 55.000 6.77 0.00 42.72 3.32
396 397 0.538287 AAGAGGCCTTGCAGACAACC 60.538 55.000 6.77 0.00 0.00 3.77
397 398 1.228245 GAGGCCTTGCAGACAACCA 60.228 57.895 6.77 0.00 0.00 3.67
398 399 0.823356 GAGGCCTTGCAGACAACCAA 60.823 55.000 6.77 0.00 0.00 3.67
399 400 0.396974 AGGCCTTGCAGACAACCAAA 60.397 50.000 0.00 0.00 0.00 3.28
400 401 0.249447 GGCCTTGCAGACAACCAAAC 60.249 55.000 0.00 0.00 0.00 2.93
401 402 0.459489 GCCTTGCAGACAACCAAACA 59.541 50.000 0.00 0.00 0.00 2.83
402 403 1.134848 GCCTTGCAGACAACCAAACAA 60.135 47.619 0.00 0.00 0.00 2.83
403 404 2.539476 CCTTGCAGACAACCAAACAAC 58.461 47.619 0.00 0.00 0.00 3.32
404 405 2.166254 CCTTGCAGACAACCAAACAACT 59.834 45.455 0.00 0.00 0.00 3.16
405 406 3.368323 CCTTGCAGACAACCAAACAACTT 60.368 43.478 0.00 0.00 0.00 2.66
406 407 3.229276 TGCAGACAACCAAACAACTTG 57.771 42.857 0.00 0.00 34.52 3.16
407 408 1.926510 GCAGACAACCAAACAACTTGC 59.073 47.619 0.00 0.00 33.27 4.01
408 409 2.673610 GCAGACAACCAAACAACTTGCA 60.674 45.455 0.00 0.00 33.27 4.08
409 410 3.181397 CAGACAACCAAACAACTTGCAG 58.819 45.455 0.00 0.00 33.27 4.41
410 411 1.926510 GACAACCAAACAACTTGCAGC 59.073 47.619 0.00 0.00 33.27 5.25
411 412 1.550072 ACAACCAAACAACTTGCAGCT 59.450 42.857 0.00 0.00 33.27 4.24
412 413 1.928503 CAACCAAACAACTTGCAGCTG 59.071 47.619 10.11 10.11 33.27 4.24
413 414 0.179103 ACCAAACAACTTGCAGCTGC 60.179 50.000 31.89 31.89 42.50 5.25
423 424 4.320971 GCAGCTGCATTGCATAGC 57.679 55.556 33.36 13.03 41.17 2.97
424 425 1.299926 GCAGCTGCATTGCATAGCC 60.300 57.895 33.36 0.00 41.17 3.93
425 426 1.735376 GCAGCTGCATTGCATAGCCT 61.735 55.000 33.36 3.84 41.17 4.58
426 427 0.744874 CAGCTGCATTGCATAGCCTT 59.255 50.000 12.53 0.00 38.13 4.35
427 428 1.030457 AGCTGCATTGCATAGCCTTC 58.970 50.000 12.53 0.00 38.13 3.46
428 429 1.030457 GCTGCATTGCATAGCCTTCT 58.970 50.000 12.53 0.00 38.13 2.85
429 430 1.001597 GCTGCATTGCATAGCCTTCTC 60.002 52.381 12.53 0.00 38.13 2.87
430 431 2.294979 CTGCATTGCATAGCCTTCTCA 58.705 47.619 12.53 0.00 38.13 3.27
431 432 2.686405 CTGCATTGCATAGCCTTCTCAA 59.314 45.455 12.53 0.00 38.13 3.02
432 433 2.424601 TGCATTGCATAGCCTTCTCAAC 59.575 45.455 7.38 0.00 31.71 3.18
433 434 2.686915 GCATTGCATAGCCTTCTCAACT 59.313 45.455 3.15 0.00 0.00 3.16
434 435 3.243002 GCATTGCATAGCCTTCTCAACTC 60.243 47.826 3.15 0.00 0.00 3.01
435 436 3.701205 TTGCATAGCCTTCTCAACTCA 57.299 42.857 0.00 0.00 0.00 3.41
436 437 3.257469 TGCATAGCCTTCTCAACTCAG 57.743 47.619 0.00 0.00 0.00 3.35
437 438 2.568956 TGCATAGCCTTCTCAACTCAGT 59.431 45.455 0.00 0.00 0.00 3.41
438 439 3.194062 GCATAGCCTTCTCAACTCAGTC 58.806 50.000 0.00 0.00 0.00 3.51
439 440 3.118811 GCATAGCCTTCTCAACTCAGTCT 60.119 47.826 0.00 0.00 0.00 3.24
440 441 4.681744 CATAGCCTTCTCAACTCAGTCTC 58.318 47.826 0.00 0.00 0.00 3.36
441 442 2.603021 AGCCTTCTCAACTCAGTCTCA 58.397 47.619 0.00 0.00 0.00 3.27
442 443 2.298729 AGCCTTCTCAACTCAGTCTCAC 59.701 50.000 0.00 0.00 0.00 3.51
443 444 2.298729 GCCTTCTCAACTCAGTCTCACT 59.701 50.000 0.00 0.00 0.00 3.41
444 445 3.508012 GCCTTCTCAACTCAGTCTCACTA 59.492 47.826 0.00 0.00 0.00 2.74
445 446 4.159506 GCCTTCTCAACTCAGTCTCACTAT 59.840 45.833 0.00 0.00 0.00 2.12
446 447 5.358442 GCCTTCTCAACTCAGTCTCACTATA 59.642 44.000 0.00 0.00 0.00 1.31
447 448 6.679392 GCCTTCTCAACTCAGTCTCACTATAC 60.679 46.154 0.00 0.00 0.00 1.47
448 449 6.375736 CCTTCTCAACTCAGTCTCACTATACA 59.624 42.308 0.00 0.00 0.00 2.29
449 450 7.094162 CCTTCTCAACTCAGTCTCACTATACAA 60.094 40.741 0.00 0.00 0.00 2.41
450 451 7.761038 TCTCAACTCAGTCTCACTATACAAA 57.239 36.000 0.00 0.00 0.00 2.83
451 452 7.594714 TCTCAACTCAGTCTCACTATACAAAC 58.405 38.462 0.00 0.00 0.00 2.93
452 453 7.230712 TCTCAACTCAGTCTCACTATACAAACA 59.769 37.037 0.00 0.00 0.00 2.83
453 454 7.145985 TCAACTCAGTCTCACTATACAAACAC 58.854 38.462 0.00 0.00 0.00 3.32
454 455 6.650427 ACTCAGTCTCACTATACAAACACA 57.350 37.500 0.00 0.00 0.00 3.72
455 456 6.682746 ACTCAGTCTCACTATACAAACACAG 58.317 40.000 0.00 0.00 0.00 3.66
456 457 5.470368 TCAGTCTCACTATACAAACACAGC 58.530 41.667 0.00 0.00 0.00 4.40
457 458 4.627467 CAGTCTCACTATACAAACACAGCC 59.373 45.833 0.00 0.00 0.00 4.85
458 459 4.528596 AGTCTCACTATACAAACACAGCCT 59.471 41.667 0.00 0.00 0.00 4.58
459 460 4.865365 GTCTCACTATACAAACACAGCCTC 59.135 45.833 0.00 0.00 0.00 4.70
460 461 4.526650 TCTCACTATACAAACACAGCCTCA 59.473 41.667 0.00 0.00 0.00 3.86
461 462 5.011635 TCTCACTATACAAACACAGCCTCAA 59.988 40.000 0.00 0.00 0.00 3.02
462 463 5.616270 TCACTATACAAACACAGCCTCAAA 58.384 37.500 0.00 0.00 0.00 2.69
463 464 6.237901 TCACTATACAAACACAGCCTCAAAT 58.762 36.000 0.00 0.00 0.00 2.32
464 465 6.149308 TCACTATACAAACACAGCCTCAAATG 59.851 38.462 0.00 0.00 0.00 2.32
465 466 2.514205 ACAAACACAGCCTCAAATGC 57.486 45.000 0.00 0.00 0.00 3.56
472 473 0.459585 CAGCCTCAAATGCACCATGC 60.460 55.000 0.00 0.00 45.29 4.06
614 615 0.525668 CGACACGACTGGCTATCACC 60.526 60.000 0.00 0.00 0.00 4.02
627 628 3.636300 GGCTATCACCCATGCATGTAAAA 59.364 43.478 24.58 8.54 0.00 1.52
644 645 1.326951 AAAAACCGCAAGTGGGCTGT 61.327 50.000 4.49 0.00 32.32 4.40
646 647 3.714487 AACCGCAAGTGGGCTGTGT 62.714 57.895 4.49 0.00 31.35 3.72
647 648 2.906897 CCGCAAGTGGGCTGTGTT 60.907 61.111 0.00 0.00 0.00 3.32
755 757 3.683937 CCCAAGCAAGCAACCCCG 61.684 66.667 0.00 0.00 0.00 5.73
809 811 1.811266 CAGTTCGTCCGCCCATCAG 60.811 63.158 0.00 0.00 0.00 2.90
989 1024 1.955529 CTGATTGGTCGTTGGTCGCG 61.956 60.000 0.00 0.00 39.67 5.87
1091 1136 2.097038 CAGCTCGGGTTTCAGCTCG 61.097 63.158 0.00 0.00 44.47 5.03
1233 1278 2.743928 CGCAGGGTCAAGGTCAGC 60.744 66.667 0.00 0.00 0.00 4.26
1263 1308 2.448705 GCTCTCTTTGTCGCGCTCC 61.449 63.158 5.56 0.00 0.00 4.70
1434 1485 2.279784 GCCATCGCCTTCCTCTCG 60.280 66.667 0.00 0.00 0.00 4.04
1567 1618 0.532573 CCTCTCATGGTACGTGCAGT 59.467 55.000 5.86 0.00 0.00 4.40
1637 1688 3.759581 AGCACCACATGAGAATTCTGTT 58.240 40.909 14.00 0.00 0.00 3.16
2114 2173 1.144936 CGAGTGGGGGCATCTTCTC 59.855 63.158 0.00 0.00 0.00 2.87
2205 2267 1.591768 GTAGGTTGGATGGGAGGGAA 58.408 55.000 0.00 0.00 0.00 3.97
2207 2269 1.466858 AGGTTGGATGGGAGGGAAAA 58.533 50.000 0.00 0.00 0.00 2.29
2241 2303 8.301720 AGAATTACTGACACATTTACTGACGTA 58.698 33.333 0.00 0.00 0.00 3.57
2288 2350 3.335579 CCGAACTGGTAAGAAGGAAAGG 58.664 50.000 0.00 0.00 0.00 3.11
2335 2397 4.200874 ACAGAAATTACACGGGTTTGTGA 58.799 39.130 0.00 0.00 42.55 3.58
2336 2398 4.641094 ACAGAAATTACACGGGTTTGTGAA 59.359 37.500 0.00 0.00 42.55 3.18
2338 2400 4.885325 AGAAATTACACGGGTTTGTGAACT 59.115 37.500 0.00 0.00 42.55 3.01
2339 2401 4.823790 AATTACACGGGTTTGTGAACTC 57.176 40.909 0.00 0.00 42.55 3.01
2340 2402 2.243602 TACACGGGTTTGTGAACTCC 57.756 50.000 0.00 0.00 42.55 3.85
2341 2403 0.253610 ACACGGGTTTGTGAACTCCA 59.746 50.000 0.24 0.00 42.55 3.86
2342 2404 1.133915 ACACGGGTTTGTGAACTCCAT 60.134 47.619 0.24 0.00 42.55 3.41
2343 2405 1.535462 CACGGGTTTGTGAACTCCATC 59.465 52.381 0.00 0.00 42.55 3.51
2344 2406 0.796312 CGGGTTTGTGAACTCCATCG 59.204 55.000 0.00 0.00 32.35 3.84
2345 2407 0.521735 GGGTTTGTGAACTCCATCGC 59.478 55.000 0.00 0.00 36.03 4.58
2346 2408 0.165944 GGTTTGTGAACTCCATCGCG 59.834 55.000 0.00 0.00 36.03 5.87
2355 2417 4.728102 TCCATCGCGCGGACGTTT 62.728 61.111 31.69 5.20 42.83 3.60
2363 2425 1.677208 GCGCGGACGTTTGTTTTATT 58.323 45.000 8.83 0.00 42.83 1.40
2373 2435 7.323177 CGGACGTTTGTTTTATTCGGATTTTAA 59.677 33.333 0.00 0.00 0.00 1.52
2374 2436 8.966194 GGACGTTTGTTTTATTCGGATTTTAAA 58.034 29.630 0.00 0.00 0.00 1.52
2421 2483 3.717294 GGGCGTGTCCTGGGATGT 61.717 66.667 0.00 0.00 34.39 3.06
2462 2524 2.258286 GCCGCATCCGTTTGCTTT 59.742 55.556 5.44 0.00 40.54 3.51
2483 2546 2.754946 TCCTGTCCGCGTCTATTTTT 57.245 45.000 4.92 0.00 0.00 1.94
2530 2600 0.255890 GCCCTAGTTCATCAGGCCAA 59.744 55.000 5.01 0.00 37.66 4.52
2630 2703 6.440328 ACACAACCAGCCTCCAAAATAAATAT 59.560 34.615 0.00 0.00 0.00 1.28
2687 2760 1.039233 CAGCCGGCCTCCAAAATGAT 61.039 55.000 26.15 0.00 0.00 2.45
2710 2783 2.652382 TTTTCTCGCCGGCACACTGA 62.652 55.000 28.98 14.23 0.00 3.41
2845 2920 2.523453 GAACCAGGCCCTCGTCTTCC 62.523 65.000 0.00 0.00 0.00 3.46
2853 2928 1.517832 CCTCGTCTTCCCGCTCATT 59.482 57.895 0.00 0.00 0.00 2.57
2867 2942 2.416547 CGCTCATTTTCGACAAGTCCAT 59.583 45.455 0.00 0.00 0.00 3.41
2960 3035 2.280592 GGCCTTGACGTTGTCGGT 60.281 61.111 0.00 0.00 41.85 4.69
2983 3058 1.002868 ATGTCGAGCTGCCTTTGCT 60.003 52.632 0.00 0.00 44.24 3.91
3117 3192 1.806542 TGCTTCATTTGCTCGTCCTTC 59.193 47.619 0.00 0.00 0.00 3.46
3122 3197 4.280436 TCATTTGCTCGTCCTTCCTTTA 57.720 40.909 0.00 0.00 0.00 1.85
3123 3198 4.843728 TCATTTGCTCGTCCTTCCTTTAT 58.156 39.130 0.00 0.00 0.00 1.40
3223 3298 2.094906 CGTATGTCGTCAACCTTGGAGA 60.095 50.000 0.00 0.00 34.52 3.71
3276 3351 1.762460 ATCTCCACCTCCGGCGAAT 60.762 57.895 9.30 0.00 0.00 3.34
3429 3504 4.155826 TCCAAAGATTGAAATGCCTACACG 59.844 41.667 0.00 0.00 0.00 4.49
3454 3529 7.509141 ACATGATCAACAACAAGTGAACATA 57.491 32.000 0.00 0.00 0.00 2.29
3553 3628 3.311110 GAGACCACTCACGGGCCA 61.311 66.667 4.39 0.00 42.21 5.36
3591 3666 1.313772 TGCGGCACAATACTTGTTGT 58.686 45.000 0.00 0.00 43.23 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.374758 CGACCTCAATGCCATTGTCG 59.625 55.000 16.55 14.33 41.02 4.35
1 2 1.398390 GACGACCTCAATGCCATTGTC 59.602 52.381 16.55 6.85 41.02 3.18
2 3 1.271325 TGACGACCTCAATGCCATTGT 60.271 47.619 16.55 0.00 41.02 2.71
3 4 1.452110 TGACGACCTCAATGCCATTG 58.548 50.000 11.24 11.24 41.57 2.82
4 5 1.812571 GTTGACGACCTCAATGCCATT 59.187 47.619 0.00 0.00 41.10 3.16
5 6 1.271325 TGTTGACGACCTCAATGCCAT 60.271 47.619 0.00 0.00 41.10 4.40
6 7 0.107643 TGTTGACGACCTCAATGCCA 59.892 50.000 0.00 0.00 41.10 4.92
7 8 1.197721 CTTGTTGACGACCTCAATGCC 59.802 52.381 0.00 0.00 41.10 4.40
8 9 1.873591 ACTTGTTGACGACCTCAATGC 59.126 47.619 0.00 0.00 41.10 3.56
9 10 2.349817 GCACTTGTTGACGACCTCAATG 60.350 50.000 0.00 0.00 41.10 2.82
10 11 1.873591 GCACTTGTTGACGACCTCAAT 59.126 47.619 0.00 0.00 41.10 2.57
11 12 1.295792 GCACTTGTTGACGACCTCAA 58.704 50.000 0.00 0.00 36.46 3.02
12 13 0.874175 CGCACTTGTTGACGACCTCA 60.874 55.000 0.00 0.00 0.00 3.86
13 14 1.557443 CCGCACTTGTTGACGACCTC 61.557 60.000 0.00 0.00 0.00 3.85
14 15 1.594293 CCGCACTTGTTGACGACCT 60.594 57.895 0.00 0.00 0.00 3.85
15 16 1.155424 TTCCGCACTTGTTGACGACC 61.155 55.000 0.00 0.00 0.00 4.79
16 17 0.232303 CTTCCGCACTTGTTGACGAC 59.768 55.000 0.00 0.00 0.00 4.34
17 18 1.495584 GCTTCCGCACTTGTTGACGA 61.496 55.000 0.00 0.00 35.78 4.20
18 19 1.082756 GCTTCCGCACTTGTTGACG 60.083 57.895 0.00 0.00 35.78 4.35
19 20 2.021722 TGCTTCCGCACTTGTTGAC 58.978 52.632 0.00 0.00 42.25 3.18
20 21 4.549793 TGCTTCCGCACTTGTTGA 57.450 50.000 0.00 0.00 42.25 3.18
28 29 2.733218 CTTCGTCGTGCTTCCGCA 60.733 61.111 0.00 0.00 45.60 5.69
29 30 3.479269 CCTTCGTCGTGCTTCCGC 61.479 66.667 0.00 0.00 0.00 5.54
30 31 3.479269 GCCTTCGTCGTGCTTCCG 61.479 66.667 0.00 0.00 0.00 4.30
31 32 1.668151 AAGCCTTCGTCGTGCTTCC 60.668 57.895 11.64 0.00 41.23 3.46
32 33 3.952811 AAGCCTTCGTCGTGCTTC 58.047 55.556 11.64 0.00 41.23 3.86
47 48 0.460987 CCTAGTCCTTGGCAGCGAAG 60.461 60.000 10.12 10.12 0.00 3.79
48 49 1.596934 CCTAGTCCTTGGCAGCGAA 59.403 57.895 0.00 0.00 0.00 4.70
49 50 2.359169 CCCTAGTCCTTGGCAGCGA 61.359 63.158 0.00 0.00 0.00 4.93
50 51 2.187946 CCCTAGTCCTTGGCAGCG 59.812 66.667 0.00 0.00 0.00 5.18
51 52 2.124529 GCCCTAGTCCTTGGCAGC 60.125 66.667 2.40 0.00 44.70 5.25
54 55 4.176752 CCGGCCCTAGTCCTTGGC 62.177 72.222 0.00 0.00 44.59 4.52
55 56 3.480133 CCCGGCCCTAGTCCTTGG 61.480 72.222 0.00 0.00 0.00 3.61
56 57 3.480133 CCCCGGCCCTAGTCCTTG 61.480 72.222 0.00 0.00 0.00 3.61
68 69 3.995809 TAGGAAGGAGGTGCCCCGG 62.996 68.421 0.00 0.00 37.37 5.73
69 70 1.972660 CTTAGGAAGGAGGTGCCCCG 61.973 65.000 0.00 0.00 37.37 5.73
70 71 0.914902 ACTTAGGAAGGAGGTGCCCC 60.915 60.000 0.00 0.00 37.37 5.80
71 72 1.485480 GTACTTAGGAAGGAGGTGCCC 59.515 57.143 0.00 0.00 37.37 5.36
72 73 2.468915 AGTACTTAGGAAGGAGGTGCC 58.531 52.381 0.00 0.00 0.00 5.01
73 74 4.023021 CGATAGTACTTAGGAAGGAGGTGC 60.023 50.000 0.00 0.00 0.00 5.01
74 75 5.374921 TCGATAGTACTTAGGAAGGAGGTG 58.625 45.833 0.00 0.00 37.40 4.00
75 76 5.132480 ACTCGATAGTACTTAGGAAGGAGGT 59.868 44.000 0.00 0.00 32.84 3.85
76 77 5.623169 ACTCGATAGTACTTAGGAAGGAGG 58.377 45.833 0.00 0.00 32.84 4.30
77 78 6.425721 CAGACTCGATAGTACTTAGGAAGGAG 59.574 46.154 0.00 1.87 35.56 3.69
78 79 6.289834 CAGACTCGATAGTACTTAGGAAGGA 58.710 44.000 0.00 0.00 35.56 3.36
79 80 5.049267 GCAGACTCGATAGTACTTAGGAAGG 60.049 48.000 0.00 0.00 35.56 3.46
80 81 5.761234 AGCAGACTCGATAGTACTTAGGAAG 59.239 44.000 0.00 0.00 35.56 3.46
81 82 5.682659 AGCAGACTCGATAGTACTTAGGAA 58.317 41.667 0.00 0.00 35.56 3.36
82 83 5.293319 AGCAGACTCGATAGTACTTAGGA 57.707 43.478 0.00 0.00 35.56 2.94
83 84 6.038382 TCAAAGCAGACTCGATAGTACTTAGG 59.962 42.308 0.00 0.00 35.56 2.69
84 85 7.017498 TCAAAGCAGACTCGATAGTACTTAG 57.983 40.000 0.00 0.00 35.56 2.18
85 86 6.997239 TCAAAGCAGACTCGATAGTACTTA 57.003 37.500 0.00 0.00 35.56 2.24
86 87 5.899120 TCAAAGCAGACTCGATAGTACTT 57.101 39.130 0.00 0.00 35.56 2.24
87 88 5.416326 AGTTCAAAGCAGACTCGATAGTACT 59.584 40.000 0.00 0.00 35.56 2.73
88 89 5.513495 CAGTTCAAAGCAGACTCGATAGTAC 59.487 44.000 0.00 0.00 35.56 2.73
89 90 5.183331 ACAGTTCAAAGCAGACTCGATAGTA 59.817 40.000 0.00 0.00 35.56 1.82
90 91 4.021894 ACAGTTCAAAGCAGACTCGATAGT 60.022 41.667 0.00 0.00 39.21 2.12
91 92 4.489810 ACAGTTCAAAGCAGACTCGATAG 58.510 43.478 0.00 0.00 0.00 2.08
92 93 4.521130 ACAGTTCAAAGCAGACTCGATA 57.479 40.909 0.00 0.00 0.00 2.92
93 94 3.393089 ACAGTTCAAAGCAGACTCGAT 57.607 42.857 0.00 0.00 0.00 3.59
94 95 2.890808 ACAGTTCAAAGCAGACTCGA 57.109 45.000 0.00 0.00 0.00 4.04
95 96 3.951979 AAACAGTTCAAAGCAGACTCG 57.048 42.857 0.00 0.00 0.00 4.18
96 97 6.545504 TCATAAACAGTTCAAAGCAGACTC 57.454 37.500 0.00 0.00 0.00 3.36
97 98 7.516198 AATCATAAACAGTTCAAAGCAGACT 57.484 32.000 0.00 0.00 0.00 3.24
98 99 9.846248 ATAAATCATAAACAGTTCAAAGCAGAC 57.154 29.630 0.00 0.00 0.00 3.51
99 100 9.844790 CATAAATCATAAACAGTTCAAAGCAGA 57.155 29.630 0.00 0.00 0.00 4.26
100 101 8.589629 GCATAAATCATAAACAGTTCAAAGCAG 58.410 33.333 0.00 0.00 0.00 4.24
101 102 7.273164 CGCATAAATCATAAACAGTTCAAAGCA 59.727 33.333 0.00 0.00 0.00 3.91
102 103 7.273381 ACGCATAAATCATAAACAGTTCAAAGC 59.727 33.333 0.00 0.00 0.00 3.51
103 104 8.673626 ACGCATAAATCATAAACAGTTCAAAG 57.326 30.769 0.00 0.00 0.00 2.77
104 105 8.910666 CAACGCATAAATCATAAACAGTTCAAA 58.089 29.630 0.00 0.00 0.00 2.69
105 106 8.293157 TCAACGCATAAATCATAAACAGTTCAA 58.707 29.630 0.00 0.00 0.00 2.69
106 107 7.811653 TCAACGCATAAATCATAAACAGTTCA 58.188 30.769 0.00 0.00 0.00 3.18
107 108 8.575454 GTTCAACGCATAAATCATAAACAGTTC 58.425 33.333 0.00 0.00 0.00 3.01
108 109 8.296713 AGTTCAACGCATAAATCATAAACAGTT 58.703 29.630 0.00 0.00 0.00 3.16
109 110 7.750458 CAGTTCAACGCATAAATCATAAACAGT 59.250 33.333 0.00 0.00 0.00 3.55
110 111 7.750458 ACAGTTCAACGCATAAATCATAAACAG 59.250 33.333 0.00 0.00 0.00 3.16
111 112 7.589395 ACAGTTCAACGCATAAATCATAAACA 58.411 30.769 0.00 0.00 0.00 2.83
112 113 8.447787 AACAGTTCAACGCATAAATCATAAAC 57.552 30.769 0.00 0.00 0.00 2.01
114 115 9.715123 CATAACAGTTCAACGCATAAATCATAA 57.285 29.630 0.00 0.00 0.00 1.90
115 116 9.103861 TCATAACAGTTCAACGCATAAATCATA 57.896 29.630 0.00 0.00 0.00 2.15
116 117 7.984391 TCATAACAGTTCAACGCATAAATCAT 58.016 30.769 0.00 0.00 0.00 2.45
117 118 7.371126 TCATAACAGTTCAACGCATAAATCA 57.629 32.000 0.00 0.00 0.00 2.57
118 119 7.962918 ACTTCATAACAGTTCAACGCATAAATC 59.037 33.333 0.00 0.00 0.00 2.17
119 120 7.750458 CACTTCATAACAGTTCAACGCATAAAT 59.250 33.333 0.00 0.00 0.00 1.40
120 121 7.075121 CACTTCATAACAGTTCAACGCATAAA 58.925 34.615 0.00 0.00 0.00 1.40
121 122 6.203915 ACACTTCATAACAGTTCAACGCATAA 59.796 34.615 0.00 0.00 0.00 1.90
122 123 5.699001 ACACTTCATAACAGTTCAACGCATA 59.301 36.000 0.00 0.00 0.00 3.14
123 124 4.515191 ACACTTCATAACAGTTCAACGCAT 59.485 37.500 0.00 0.00 0.00 4.73
124 125 3.874543 ACACTTCATAACAGTTCAACGCA 59.125 39.130 0.00 0.00 0.00 5.24
125 126 4.211389 CACACTTCATAACAGTTCAACGC 58.789 43.478 0.00 0.00 0.00 4.84
126 127 4.272504 ACCACACTTCATAACAGTTCAACG 59.727 41.667 0.00 0.00 0.00 4.10
127 128 5.751243 ACCACACTTCATAACAGTTCAAC 57.249 39.130 0.00 0.00 0.00 3.18
128 129 6.481976 CAGTACCACACTTCATAACAGTTCAA 59.518 38.462 0.00 0.00 34.26 2.69
129 130 5.989168 CAGTACCACACTTCATAACAGTTCA 59.011 40.000 0.00 0.00 34.26 3.18
130 131 5.107065 GCAGTACCACACTTCATAACAGTTC 60.107 44.000 0.00 0.00 34.26 3.01
131 132 4.755123 GCAGTACCACACTTCATAACAGTT 59.245 41.667 0.00 0.00 34.26 3.16
132 133 4.040461 AGCAGTACCACACTTCATAACAGT 59.960 41.667 0.00 0.00 34.26 3.55
133 134 4.569943 AGCAGTACCACACTTCATAACAG 58.430 43.478 0.00 0.00 34.26 3.16
134 135 4.617253 AGCAGTACCACACTTCATAACA 57.383 40.909 0.00 0.00 34.26 2.41
135 136 7.010552 CAGATAAGCAGTACCACACTTCATAAC 59.989 40.741 0.00 0.00 34.26 1.89
136 137 7.041721 CAGATAAGCAGTACCACACTTCATAA 58.958 38.462 0.00 0.00 34.26 1.90
137 138 6.379988 TCAGATAAGCAGTACCACACTTCATA 59.620 38.462 0.00 0.00 34.26 2.15
138 139 5.187772 TCAGATAAGCAGTACCACACTTCAT 59.812 40.000 0.00 0.00 34.26 2.57
139 140 4.526650 TCAGATAAGCAGTACCACACTTCA 59.473 41.667 0.00 0.00 34.26 3.02
140 141 5.073311 TCAGATAAGCAGTACCACACTTC 57.927 43.478 0.00 0.00 34.26 3.01
141 142 5.483685 TTCAGATAAGCAGTACCACACTT 57.516 39.130 0.00 0.00 34.26 3.16
142 143 5.683876 ATTCAGATAAGCAGTACCACACT 57.316 39.130 0.00 0.00 38.32 3.55
143 144 7.519008 GCATAATTCAGATAAGCAGTACCACAC 60.519 40.741 0.00 0.00 0.00 3.82
144 145 6.483307 GCATAATTCAGATAAGCAGTACCACA 59.517 38.462 0.00 0.00 0.00 4.17
145 146 6.708054 AGCATAATTCAGATAAGCAGTACCAC 59.292 38.462 0.00 0.00 0.00 4.16
146 147 6.707608 CAGCATAATTCAGATAAGCAGTACCA 59.292 38.462 0.00 0.00 0.00 3.25
147 148 6.708054 ACAGCATAATTCAGATAAGCAGTACC 59.292 38.462 0.00 0.00 0.00 3.34
148 149 7.721286 ACAGCATAATTCAGATAAGCAGTAC 57.279 36.000 0.00 0.00 0.00 2.73
149 150 9.830975 TTAACAGCATAATTCAGATAAGCAGTA 57.169 29.630 0.00 0.00 0.00 2.74
150 151 8.737168 TTAACAGCATAATTCAGATAAGCAGT 57.263 30.769 0.00 0.00 0.00 4.40
160 161 9.734620 GCATCAACTATTTAACAGCATAATTCA 57.265 29.630 0.00 0.00 0.00 2.57
161 162 9.956720 AGCATCAACTATTTAACAGCATAATTC 57.043 29.630 0.00 0.00 0.00 2.17
162 163 9.956720 GAGCATCAACTATTTAACAGCATAATT 57.043 29.630 0.00 0.00 33.17 1.40
163 164 9.347240 AGAGCATCAACTATTTAACAGCATAAT 57.653 29.630 0.00 0.00 37.82 1.28
164 165 8.615211 CAGAGCATCAACTATTTAACAGCATAA 58.385 33.333 0.00 0.00 37.82 1.90
165 166 7.770433 ACAGAGCATCAACTATTTAACAGCATA 59.230 33.333 0.00 0.00 37.82 3.14
166 167 6.600822 ACAGAGCATCAACTATTTAACAGCAT 59.399 34.615 0.00 0.00 37.82 3.79
167 168 5.939883 ACAGAGCATCAACTATTTAACAGCA 59.060 36.000 0.00 0.00 37.82 4.41
168 169 6.428385 ACAGAGCATCAACTATTTAACAGC 57.572 37.500 0.00 0.00 37.82 4.40
171 172 9.226345 GCATAAACAGAGCATCAACTATTTAAC 57.774 33.333 0.00 0.00 37.82 2.01
172 173 9.177608 AGCATAAACAGAGCATCAACTATTTAA 57.822 29.630 0.00 0.00 37.82 1.52
173 174 8.737168 AGCATAAACAGAGCATCAACTATTTA 57.263 30.769 0.00 0.00 37.82 1.40
174 175 7.555554 AGAGCATAAACAGAGCATCAACTATTT 59.444 33.333 0.00 0.00 37.82 1.40
175 176 7.012138 CAGAGCATAAACAGAGCATCAACTATT 59.988 37.037 0.00 0.00 37.82 1.73
176 177 6.482641 CAGAGCATAAACAGAGCATCAACTAT 59.517 38.462 0.00 0.00 37.82 2.12
177 178 5.814188 CAGAGCATAAACAGAGCATCAACTA 59.186 40.000 0.00 0.00 37.82 2.24
178 179 4.634883 CAGAGCATAAACAGAGCATCAACT 59.365 41.667 0.00 0.00 37.82 3.16
179 180 4.730035 GCAGAGCATAAACAGAGCATCAAC 60.730 45.833 0.00 0.00 37.82 3.18
180 181 3.376234 GCAGAGCATAAACAGAGCATCAA 59.624 43.478 0.00 0.00 37.82 2.57
181 182 2.941064 GCAGAGCATAAACAGAGCATCA 59.059 45.455 0.00 0.00 37.82 3.07
182 183 3.204526 AGCAGAGCATAAACAGAGCATC 58.795 45.455 0.00 0.00 0.00 3.91
183 184 3.118334 AGAGCAGAGCATAAACAGAGCAT 60.118 43.478 0.00 0.00 0.00 3.79
184 185 2.235650 AGAGCAGAGCATAAACAGAGCA 59.764 45.455 0.00 0.00 0.00 4.26
185 186 2.608546 CAGAGCAGAGCATAAACAGAGC 59.391 50.000 0.00 0.00 0.00 4.09
186 187 2.608546 GCAGAGCAGAGCATAAACAGAG 59.391 50.000 0.00 0.00 0.00 3.35
187 188 2.235650 AGCAGAGCAGAGCATAAACAGA 59.764 45.455 0.00 0.00 0.00 3.41
188 189 2.630158 AGCAGAGCAGAGCATAAACAG 58.370 47.619 0.00 0.00 0.00 3.16
189 190 2.775911 AGCAGAGCAGAGCATAAACA 57.224 45.000 0.00 0.00 0.00 2.83
190 191 4.813161 TCATAAGCAGAGCAGAGCATAAAC 59.187 41.667 0.00 0.00 0.00 2.01
191 192 5.027293 TCATAAGCAGAGCAGAGCATAAA 57.973 39.130 0.00 0.00 0.00 1.40
192 193 4.677673 TCATAAGCAGAGCAGAGCATAA 57.322 40.909 0.00 0.00 0.00 1.90
193 194 4.040095 ACATCATAAGCAGAGCAGAGCATA 59.960 41.667 0.00 0.00 0.00 3.14
194 195 3.181453 ACATCATAAGCAGAGCAGAGCAT 60.181 43.478 0.00 0.00 0.00 3.79
195 196 2.169978 ACATCATAAGCAGAGCAGAGCA 59.830 45.455 0.00 0.00 0.00 4.26
196 197 2.544686 CACATCATAAGCAGAGCAGAGC 59.455 50.000 0.00 0.00 0.00 4.09
197 198 3.556365 CACACATCATAAGCAGAGCAGAG 59.444 47.826 0.00 0.00 0.00 3.35
198 199 3.528532 CACACATCATAAGCAGAGCAGA 58.471 45.455 0.00 0.00 0.00 4.26
199 200 2.031807 GCACACATCATAAGCAGAGCAG 59.968 50.000 0.00 0.00 0.00 4.24
200 201 2.011947 GCACACATCATAAGCAGAGCA 58.988 47.619 0.00 0.00 0.00 4.26
201 202 2.286872 AGCACACATCATAAGCAGAGC 58.713 47.619 0.00 0.00 0.00 4.09
202 203 4.436332 TGTAGCACACATCATAAGCAGAG 58.564 43.478 0.00 0.00 30.04 3.35
203 204 4.470334 TGTAGCACACATCATAAGCAGA 57.530 40.909 0.00 0.00 30.04 4.26
204 205 4.024302 CCATGTAGCACACATCATAAGCAG 60.024 45.833 1.26 0.00 44.99 4.24
205 206 3.878699 CCATGTAGCACACATCATAAGCA 59.121 43.478 1.26 0.00 44.99 3.91
206 207 3.879295 ACCATGTAGCACACATCATAAGC 59.121 43.478 1.26 0.00 44.99 3.09
207 208 5.355071 ACAACCATGTAGCACACATCATAAG 59.645 40.000 1.26 0.00 44.99 1.73
208 209 5.123661 CACAACCATGTAGCACACATCATAA 59.876 40.000 1.26 0.00 44.99 1.90
209 210 4.635324 CACAACCATGTAGCACACATCATA 59.365 41.667 1.26 0.00 44.99 2.15
210 211 3.441222 CACAACCATGTAGCACACATCAT 59.559 43.478 1.26 0.00 44.99 2.45
211 212 2.813172 CACAACCATGTAGCACACATCA 59.187 45.455 1.26 0.00 44.99 3.07
212 213 2.414559 GCACAACCATGTAGCACACATC 60.415 50.000 1.26 0.00 44.99 3.06
214 215 0.950836 GCACAACCATGTAGCACACA 59.049 50.000 0.00 0.00 42.69 3.72
215 216 0.110238 CGCACAACCATGTAGCACAC 60.110 55.000 0.00 0.00 37.82 3.82
216 217 1.233950 CCGCACAACCATGTAGCACA 61.234 55.000 0.00 0.00 37.82 4.57
217 218 0.953471 TCCGCACAACCATGTAGCAC 60.953 55.000 0.00 0.00 37.82 4.40
218 219 0.250510 TTCCGCACAACCATGTAGCA 60.251 50.000 0.00 0.00 37.82 3.49
219 220 0.447801 CTTCCGCACAACCATGTAGC 59.552 55.000 0.00 0.00 37.82 3.58
220 221 1.464608 CACTTCCGCACAACCATGTAG 59.535 52.381 0.00 0.00 37.82 2.74
221 222 1.202710 ACACTTCCGCACAACCATGTA 60.203 47.619 0.00 0.00 37.82 2.29
222 223 0.465460 ACACTTCCGCACAACCATGT 60.465 50.000 0.00 0.00 41.61 3.21
223 224 0.040157 CACACTTCCGCACAACCATG 60.040 55.000 0.00 0.00 0.00 3.66
224 225 1.795170 GCACACTTCCGCACAACCAT 61.795 55.000 0.00 0.00 0.00 3.55
225 226 2.477176 GCACACTTCCGCACAACCA 61.477 57.895 0.00 0.00 0.00 3.67
226 227 2.186826 AGCACACTTCCGCACAACC 61.187 57.895 0.00 0.00 0.00 3.77
227 228 1.009675 CAGCACACTTCCGCACAAC 60.010 57.895 0.00 0.00 0.00 3.32
228 229 2.186160 CCAGCACACTTCCGCACAA 61.186 57.895 0.00 0.00 0.00 3.33
229 230 2.034048 TACCAGCACACTTCCGCACA 62.034 55.000 0.00 0.00 0.00 4.57
230 231 0.882927 TTACCAGCACACTTCCGCAC 60.883 55.000 0.00 0.00 0.00 5.34
231 232 0.882927 GTTACCAGCACACTTCCGCA 60.883 55.000 0.00 0.00 0.00 5.69
232 233 1.574702 GGTTACCAGCACACTTCCGC 61.575 60.000 0.00 0.00 0.00 5.54
233 234 0.034896 AGGTTACCAGCACACTTCCG 59.965 55.000 3.51 0.00 0.00 4.30
234 235 1.071699 TGAGGTTACCAGCACACTTCC 59.928 52.381 3.51 0.00 0.00 3.46
235 236 2.143925 GTGAGGTTACCAGCACACTTC 58.856 52.381 18.14 0.28 38.52 3.01
236 237 1.202770 GGTGAGGTTACCAGCACACTT 60.203 52.381 22.30 0.00 40.61 3.16
237 238 0.396811 GGTGAGGTTACCAGCACACT 59.603 55.000 22.30 0.00 40.61 3.55
238 239 0.107831 TGGTGAGGTTACCAGCACAC 59.892 55.000 22.30 16.47 45.46 3.82
239 240 2.534038 TGGTGAGGTTACCAGCACA 58.466 52.632 22.30 10.65 45.46 4.57
245 246 1.626825 TGGCTAGTTGGTGAGGTTACC 59.373 52.381 0.00 0.00 41.24 2.85
246 247 3.412237 TTGGCTAGTTGGTGAGGTTAC 57.588 47.619 0.00 0.00 0.00 2.50
247 248 4.440826 TTTTGGCTAGTTGGTGAGGTTA 57.559 40.909 0.00 0.00 0.00 2.85
248 249 3.306472 TTTTGGCTAGTTGGTGAGGTT 57.694 42.857 0.00 0.00 0.00 3.50
249 250 3.222603 CTTTTTGGCTAGTTGGTGAGGT 58.777 45.455 0.00 0.00 0.00 3.85
250 251 2.558359 CCTTTTTGGCTAGTTGGTGAGG 59.442 50.000 0.00 0.00 0.00 3.86
251 252 3.222603 ACCTTTTTGGCTAGTTGGTGAG 58.777 45.455 0.00 0.00 40.22 3.51
252 253 3.306472 ACCTTTTTGGCTAGTTGGTGA 57.694 42.857 0.00 0.00 40.22 4.02
253 254 4.261867 GGTAACCTTTTTGGCTAGTTGGTG 60.262 45.833 0.00 0.00 40.22 4.17
254 255 3.893200 GGTAACCTTTTTGGCTAGTTGGT 59.107 43.478 0.00 0.00 40.22 3.67
255 256 3.892588 TGGTAACCTTTTTGGCTAGTTGG 59.107 43.478 0.00 0.00 40.22 3.77
256 257 4.339814 TGTGGTAACCTTTTTGGCTAGTTG 59.660 41.667 0.00 0.00 40.22 3.16
257 258 4.340097 GTGTGGTAACCTTTTTGGCTAGTT 59.660 41.667 0.00 0.00 40.22 2.24
258 259 3.887110 GTGTGGTAACCTTTTTGGCTAGT 59.113 43.478 0.00 0.00 40.22 2.57
259 260 3.886505 TGTGTGGTAACCTTTTTGGCTAG 59.113 43.478 0.00 0.00 40.22 3.42
260 261 3.633065 GTGTGTGGTAACCTTTTTGGCTA 59.367 43.478 0.00 0.00 40.22 3.93
261 262 2.429250 GTGTGTGGTAACCTTTTTGGCT 59.571 45.455 0.00 0.00 40.22 4.75
262 263 2.482316 GGTGTGTGGTAACCTTTTTGGC 60.482 50.000 0.00 0.00 40.22 4.52
263 264 2.761208 TGGTGTGTGGTAACCTTTTTGG 59.239 45.455 0.00 0.00 42.93 3.28
264 265 3.697045 TCTGGTGTGTGGTAACCTTTTTG 59.303 43.478 0.00 0.00 37.36 2.44
265 266 3.697542 GTCTGGTGTGTGGTAACCTTTTT 59.302 43.478 0.00 0.00 37.36 1.94
266 267 3.284617 GTCTGGTGTGTGGTAACCTTTT 58.715 45.455 0.00 0.00 37.36 2.27
267 268 2.743838 CGTCTGGTGTGTGGTAACCTTT 60.744 50.000 0.00 0.00 37.36 3.11
268 269 1.202604 CGTCTGGTGTGTGGTAACCTT 60.203 52.381 0.00 0.00 37.36 3.50
269 270 0.391597 CGTCTGGTGTGTGGTAACCT 59.608 55.000 0.00 0.00 37.36 3.50
270 271 0.105408 ACGTCTGGTGTGTGGTAACC 59.895 55.000 0.00 0.00 36.96 2.85
271 272 1.595794 CAACGTCTGGTGTGTGGTAAC 59.404 52.381 0.00 0.00 0.00 2.50
272 273 1.942677 CAACGTCTGGTGTGTGGTAA 58.057 50.000 0.00 0.00 0.00 2.85
273 274 0.531090 GCAACGTCTGGTGTGTGGTA 60.531 55.000 0.00 0.00 0.00 3.25
274 275 1.817941 GCAACGTCTGGTGTGTGGT 60.818 57.895 0.00 0.00 0.00 4.16
275 276 1.165907 ATGCAACGTCTGGTGTGTGG 61.166 55.000 0.00 0.00 0.00 4.17
276 277 1.194547 GTATGCAACGTCTGGTGTGTG 59.805 52.381 0.00 0.00 0.00 3.82
277 278 1.202592 TGTATGCAACGTCTGGTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
278 279 1.507562 TGTATGCAACGTCTGGTGTG 58.492 50.000 0.00 0.00 0.00 3.82
279 280 1.871039 GTTGTATGCAACGTCTGGTGT 59.129 47.619 11.01 0.00 44.40 4.16
280 281 2.594529 GTTGTATGCAACGTCTGGTG 57.405 50.000 11.01 0.00 44.40 4.17
289 290 4.321601 GGCATAGTGTTTGGTTGTATGCAA 60.322 41.667 13.10 0.00 45.12 4.08
290 291 3.192422 GGCATAGTGTTTGGTTGTATGCA 59.808 43.478 13.10 0.00 45.12 3.96
291 292 3.443681 AGGCATAGTGTTTGGTTGTATGC 59.556 43.478 4.41 4.41 43.43 3.14
292 293 5.401550 CAAGGCATAGTGTTTGGTTGTATG 58.598 41.667 0.00 0.00 0.00 2.39
293 294 4.462483 CCAAGGCATAGTGTTTGGTTGTAT 59.538 41.667 0.00 0.00 36.25 2.29
294 295 3.823873 CCAAGGCATAGTGTTTGGTTGTA 59.176 43.478 0.00 0.00 36.25 2.41
295 296 2.627699 CCAAGGCATAGTGTTTGGTTGT 59.372 45.455 0.00 0.00 36.25 3.32
296 297 2.029110 CCCAAGGCATAGTGTTTGGTTG 60.029 50.000 11.57 0.00 38.69 3.77
297 298 2.247358 CCCAAGGCATAGTGTTTGGTT 58.753 47.619 11.57 0.00 38.69 3.67
298 299 1.923356 CCCAAGGCATAGTGTTTGGT 58.077 50.000 11.57 0.00 38.69 3.67
306 307 7.110224 GTTAGTGAACAAGCCCAAGGCATAG 62.110 48.000 8.58 0.00 42.49 2.23
307 308 5.346101 GTTAGTGAACAAGCCCAAGGCATA 61.346 45.833 8.58 0.00 42.49 3.14
308 309 4.623374 GTTAGTGAACAAGCCCAAGGCAT 61.623 47.826 8.58 0.00 42.49 4.40
309 310 3.333974 GTTAGTGAACAAGCCCAAGGCA 61.334 50.000 8.58 0.00 42.49 4.75
310 311 1.269723 GTTAGTGAACAAGCCCAAGGC 59.730 52.381 0.00 0.00 41.32 4.35
311 312 2.582052 TGTTAGTGAACAAGCCCAAGG 58.418 47.619 0.00 0.00 42.66 3.61
321 322 7.755822 TGTTTGGTTGTTTGTATGTTAGTGAAC 59.244 33.333 0.00 0.00 36.00 3.18
322 323 7.755822 GTGTTTGGTTGTTTGTATGTTAGTGAA 59.244 33.333 0.00 0.00 0.00 3.18
323 324 7.251994 GTGTTTGGTTGTTTGTATGTTAGTGA 58.748 34.615 0.00 0.00 0.00 3.41
324 325 6.474102 GGTGTTTGGTTGTTTGTATGTTAGTG 59.526 38.462 0.00 0.00 0.00 2.74
325 326 6.153000 TGGTGTTTGGTTGTTTGTATGTTAGT 59.847 34.615 0.00 0.00 0.00 2.24
326 327 6.565234 TGGTGTTTGGTTGTTTGTATGTTAG 58.435 36.000 0.00 0.00 0.00 2.34
327 328 6.405953 CCTGGTGTTTGGTTGTTTGTATGTTA 60.406 38.462 0.00 0.00 0.00 2.41
328 329 5.407407 TGGTGTTTGGTTGTTTGTATGTT 57.593 34.783 0.00 0.00 0.00 2.71
329 330 4.142049 CCTGGTGTTTGGTTGTTTGTATGT 60.142 41.667 0.00 0.00 0.00 2.29
330 331 4.367450 CCTGGTGTTTGGTTGTTTGTATG 58.633 43.478 0.00 0.00 0.00 2.39
331 332 3.181470 GCCTGGTGTTTGGTTGTTTGTAT 60.181 43.478 0.00 0.00 0.00 2.29
332 333 2.166664 GCCTGGTGTTTGGTTGTTTGTA 59.833 45.455 0.00 0.00 0.00 2.41
333 334 1.066502 GCCTGGTGTTTGGTTGTTTGT 60.067 47.619 0.00 0.00 0.00 2.83
334 335 1.066573 TGCCTGGTGTTTGGTTGTTTG 60.067 47.619 0.00 0.00 0.00 2.93
335 336 1.206849 CTGCCTGGTGTTTGGTTGTTT 59.793 47.619 0.00 0.00 0.00 2.83
336 337 0.823460 CTGCCTGGTGTTTGGTTGTT 59.177 50.000 0.00 0.00 0.00 2.83
337 338 0.324275 ACTGCCTGGTGTTTGGTTGT 60.324 50.000 0.00 0.00 0.00 3.32
338 339 0.102844 CACTGCCTGGTGTTTGGTTG 59.897 55.000 0.00 0.00 33.04 3.77
339 340 0.324275 ACACTGCCTGGTGTTTGGTT 60.324 50.000 0.00 0.00 46.71 3.67
340 341 1.037030 CACACTGCCTGGTGTTTGGT 61.037 55.000 4.79 0.00 46.71 3.67
341 342 1.735360 CACACTGCCTGGTGTTTGG 59.265 57.895 4.79 0.00 46.71 3.28
342 343 1.037030 ACCACACTGCCTGGTGTTTG 61.037 55.000 4.79 0.00 46.71 2.93
343 344 0.324275 AACCACACTGCCTGGTGTTT 60.324 50.000 4.79 0.00 46.71 2.83
344 345 0.751643 GAACCACACTGCCTGGTGTT 60.752 55.000 4.79 0.00 46.71 3.32
346 347 1.152984 TGAACCACACTGCCTGGTG 60.153 57.895 0.00 0.00 41.45 4.17
347 348 1.149174 CTGAACCACACTGCCTGGT 59.851 57.895 0.00 0.00 44.39 4.00
348 349 2.263741 GCTGAACCACACTGCCTGG 61.264 63.158 0.00 0.00 34.62 4.45
349 350 2.263741 GGCTGAACCACACTGCCTG 61.264 63.158 0.00 0.00 44.83 4.85
350 351 2.113986 GGCTGAACCACACTGCCT 59.886 61.111 0.00 0.00 44.83 4.75
351 352 2.985847 GGGCTGAACCACACTGCC 60.986 66.667 0.00 0.00 46.57 4.85
352 353 1.181098 ATTGGGCTGAACCACACTGC 61.181 55.000 0.00 0.00 41.03 4.40
353 354 0.883833 GATTGGGCTGAACCACACTG 59.116 55.000 0.00 0.00 41.03 3.66
354 355 0.606401 CGATTGGGCTGAACCACACT 60.606 55.000 0.00 0.00 41.03 3.55
355 356 1.586154 CCGATTGGGCTGAACCACAC 61.586 60.000 0.00 0.00 41.03 3.82
356 357 1.303236 CCGATTGGGCTGAACCACA 60.303 57.895 0.00 0.00 41.03 4.17
357 358 3.590824 CCGATTGGGCTGAACCAC 58.409 61.111 0.00 0.00 41.03 4.16
377 378 0.538287 GGTTGTCTGCAAGGCCTCTT 60.538 55.000 5.23 0.00 38.23 2.85
378 379 1.073897 GGTTGTCTGCAAGGCCTCT 59.926 57.895 5.23 0.00 38.23 3.69
379 380 0.823356 TTGGTTGTCTGCAAGGCCTC 60.823 55.000 5.23 0.00 38.23 4.70
380 381 0.396974 TTTGGTTGTCTGCAAGGCCT 60.397 50.000 0.00 0.00 38.23 5.19
381 382 0.249447 GTTTGGTTGTCTGCAAGGCC 60.249 55.000 0.00 0.00 38.23 5.19
382 383 0.459489 TGTTTGGTTGTCTGCAAGGC 59.541 50.000 0.00 0.00 40.66 4.35
383 384 2.166254 AGTTGTTTGGTTGTCTGCAAGG 59.834 45.455 0.00 0.00 34.94 3.61
384 385 3.508744 AGTTGTTTGGTTGTCTGCAAG 57.491 42.857 0.00 0.00 34.94 4.01
385 386 3.583806 CAAGTTGTTTGGTTGTCTGCAA 58.416 40.909 0.00 0.00 32.95 4.08
386 387 2.673610 GCAAGTTGTTTGGTTGTCTGCA 60.674 45.455 4.48 0.00 37.26 4.41
387 388 1.926510 GCAAGTTGTTTGGTTGTCTGC 59.073 47.619 4.48 0.00 37.26 4.26
388 389 3.181397 CTGCAAGTTGTTTGGTTGTCTG 58.819 45.455 4.48 0.00 37.26 3.51
389 390 2.417243 GCTGCAAGTTGTTTGGTTGTCT 60.417 45.455 4.48 0.00 37.26 3.41
390 391 1.926510 GCTGCAAGTTGTTTGGTTGTC 59.073 47.619 4.48 0.00 37.26 3.18
391 392 1.550072 AGCTGCAAGTTGTTTGGTTGT 59.450 42.857 4.48 0.00 37.26 3.32
392 393 1.928503 CAGCTGCAAGTTGTTTGGTTG 59.071 47.619 0.00 0.00 40.62 3.77
393 394 2.298411 CAGCTGCAAGTTGTTTGGTT 57.702 45.000 0.00 0.00 40.62 3.67
406 407 1.299926 GGCTATGCAATGCAGCTGC 60.300 57.895 31.89 31.89 43.65 5.25
407 408 0.744874 AAGGCTATGCAATGCAGCTG 59.255 50.000 14.98 10.11 43.65 4.24
408 409 1.030457 GAAGGCTATGCAATGCAGCT 58.970 50.000 14.98 0.00 43.65 4.24
409 410 1.001597 GAGAAGGCTATGCAATGCAGC 60.002 52.381 14.98 12.50 43.65 5.25
410 411 2.294979 TGAGAAGGCTATGCAATGCAG 58.705 47.619 14.98 1.61 43.65 4.41
411 412 2.423446 TGAGAAGGCTATGCAATGCA 57.577 45.000 11.44 11.44 44.86 3.96
412 413 2.686915 AGTTGAGAAGGCTATGCAATGC 59.313 45.455 0.00 0.00 0.00 3.56
413 414 3.943381 TGAGTTGAGAAGGCTATGCAATG 59.057 43.478 0.00 0.00 0.00 2.82
414 415 4.197750 CTGAGTTGAGAAGGCTATGCAAT 58.802 43.478 0.00 0.00 0.00 3.56
415 416 3.008375 ACTGAGTTGAGAAGGCTATGCAA 59.992 43.478 0.00 0.00 0.00 4.08
416 417 2.568956 ACTGAGTTGAGAAGGCTATGCA 59.431 45.455 0.00 0.00 0.00 3.96
417 418 3.118811 AGACTGAGTTGAGAAGGCTATGC 60.119 47.826 0.00 0.00 0.00 3.14
418 419 4.159321 TGAGACTGAGTTGAGAAGGCTATG 59.841 45.833 0.00 0.00 26.16 2.23
419 420 4.159506 GTGAGACTGAGTTGAGAAGGCTAT 59.840 45.833 0.00 0.00 26.16 2.97
420 421 3.508012 GTGAGACTGAGTTGAGAAGGCTA 59.492 47.826 0.00 0.00 26.16 3.93
421 422 2.298729 GTGAGACTGAGTTGAGAAGGCT 59.701 50.000 0.00 0.00 29.71 4.58
422 423 2.298729 AGTGAGACTGAGTTGAGAAGGC 59.701 50.000 0.00 0.00 0.00 4.35
423 424 5.913137 ATAGTGAGACTGAGTTGAGAAGG 57.087 43.478 0.00 0.00 0.00 3.46
424 425 7.384439 TGTATAGTGAGACTGAGTTGAGAAG 57.616 40.000 0.00 0.00 0.00 2.85
425 426 7.761038 TTGTATAGTGAGACTGAGTTGAGAA 57.239 36.000 0.00 0.00 0.00 2.87
426 427 7.230712 TGTTTGTATAGTGAGACTGAGTTGAGA 59.769 37.037 0.00 0.00 0.00 3.27
427 428 7.327275 GTGTTTGTATAGTGAGACTGAGTTGAG 59.673 40.741 0.00 0.00 0.00 3.02
428 429 7.145985 GTGTTTGTATAGTGAGACTGAGTTGA 58.854 38.462 0.00 0.00 0.00 3.18
429 430 6.923508 TGTGTTTGTATAGTGAGACTGAGTTG 59.076 38.462 0.00 0.00 0.00 3.16
430 431 7.050970 TGTGTTTGTATAGTGAGACTGAGTT 57.949 36.000 0.00 0.00 0.00 3.01
431 432 6.650427 TGTGTTTGTATAGTGAGACTGAGT 57.350 37.500 0.00 0.00 0.00 3.41
432 433 5.574830 GCTGTGTTTGTATAGTGAGACTGAG 59.425 44.000 0.00 0.00 0.00 3.35
433 434 5.470368 GCTGTGTTTGTATAGTGAGACTGA 58.530 41.667 0.00 0.00 0.00 3.41
434 435 4.627467 GGCTGTGTTTGTATAGTGAGACTG 59.373 45.833 0.00 0.00 0.00 3.51
435 436 4.528596 AGGCTGTGTTTGTATAGTGAGACT 59.471 41.667 0.00 0.00 0.00 3.24
436 437 4.822026 AGGCTGTGTTTGTATAGTGAGAC 58.178 43.478 0.00 0.00 0.00 3.36
437 438 4.526650 TGAGGCTGTGTTTGTATAGTGAGA 59.473 41.667 0.00 0.00 0.00 3.27
438 439 4.820897 TGAGGCTGTGTTTGTATAGTGAG 58.179 43.478 0.00 0.00 0.00 3.51
439 440 4.882842 TGAGGCTGTGTTTGTATAGTGA 57.117 40.909 0.00 0.00 0.00 3.41
440 441 5.940192 TTTGAGGCTGTGTTTGTATAGTG 57.060 39.130 0.00 0.00 0.00 2.74
441 442 5.106157 GCATTTGAGGCTGTGTTTGTATAGT 60.106 40.000 0.00 0.00 0.00 2.12
442 443 5.106197 TGCATTTGAGGCTGTGTTTGTATAG 60.106 40.000 0.00 0.00 0.00 1.31
443 444 4.764308 TGCATTTGAGGCTGTGTTTGTATA 59.236 37.500 0.00 0.00 0.00 1.47
444 445 3.573538 TGCATTTGAGGCTGTGTTTGTAT 59.426 39.130 0.00 0.00 0.00 2.29
445 446 2.954989 TGCATTTGAGGCTGTGTTTGTA 59.045 40.909 0.00 0.00 0.00 2.41
446 447 1.755959 TGCATTTGAGGCTGTGTTTGT 59.244 42.857 0.00 0.00 0.00 2.83
447 448 2.129607 GTGCATTTGAGGCTGTGTTTG 58.870 47.619 0.00 0.00 0.00 2.93
448 449 1.069049 GGTGCATTTGAGGCTGTGTTT 59.931 47.619 0.00 0.00 0.00 2.83
449 450 0.675633 GGTGCATTTGAGGCTGTGTT 59.324 50.000 0.00 0.00 0.00 3.32
450 451 0.467844 TGGTGCATTTGAGGCTGTGT 60.468 50.000 0.00 0.00 0.00 3.72
451 452 0.892755 ATGGTGCATTTGAGGCTGTG 59.107 50.000 0.00 0.00 0.00 3.66
452 453 0.892755 CATGGTGCATTTGAGGCTGT 59.107 50.000 0.00 0.00 0.00 4.40
453 454 0.459585 GCATGGTGCATTTGAGGCTG 60.460 55.000 0.00 0.00 44.26 4.85
454 455 1.895238 GCATGGTGCATTTGAGGCT 59.105 52.632 0.00 0.00 44.26 4.58
455 456 4.507879 GCATGGTGCATTTGAGGC 57.492 55.556 0.00 0.00 44.26 4.70
464 465 3.064324 GGACAGGGTGCATGGTGC 61.064 66.667 0.00 0.00 45.29 5.01
465 466 1.377725 GAGGACAGGGTGCATGGTG 60.378 63.158 0.00 0.00 0.00 4.17
472 473 4.394712 GCACGGGAGGACAGGGTG 62.395 72.222 0.00 0.00 0.00 4.61
491 492 3.623863 GAAAATCTAGAGAGAGACGCCG 58.376 50.000 0.00 0.00 34.35 6.46
627 628 2.123897 ACAGCCCACTTGCGGTTT 60.124 55.556 0.00 0.00 36.19 3.27
683 684 1.326548 GGAACGAATCATACGCACACC 59.673 52.381 0.00 0.00 0.00 4.16
809 811 4.554036 GAGGCTCGGGTCCCATGC 62.554 72.222 9.12 11.06 0.00 4.06
969 1004 1.635663 GCGACCAACGACCAATCAGG 61.636 60.000 0.00 0.00 45.77 3.86
1070 1115 2.394563 GCTGAAACCCGAGCTGCTC 61.395 63.158 19.53 19.53 32.12 4.26
1233 1278 0.977108 AAGAGAGCAGGAGCAGGAGG 60.977 60.000 0.00 0.00 45.49 4.30
1273 1318 0.248784 GCCTCTCGCCAATTGCAATC 60.249 55.000 13.38 0.00 41.33 2.67
1538 1589 2.041762 ATGAGAGGGCCAGGAGCA 59.958 61.111 6.18 0.00 46.50 4.26
1567 1618 4.081752 ACCATGGTCGTATTACACCGTAAA 60.082 41.667 13.00 0.00 35.15 2.01
2011 2070 1.283181 CCTCGTGTCCGATCGATCC 59.717 63.158 18.66 6.52 43.27 3.36
2104 2163 3.425659 AGACCAAAAAGGAGAAGATGCC 58.574 45.455 0.00 0.00 41.22 4.40
2114 2173 0.893727 CCCACCCGAGACCAAAAAGG 60.894 60.000 0.00 0.00 45.67 3.11
2188 2250 1.466858 TTTTCCCTCCCATCCAACCT 58.533 50.000 0.00 0.00 0.00 3.50
2241 2303 3.005261 TGTCATTTACAATTTGCACGGCT 59.995 39.130 0.00 0.00 34.29 5.52
2294 2356 4.156190 TCTGTTCTGTTCTGTACGATCCTC 59.844 45.833 0.00 0.00 0.00 3.71
2338 2400 4.728102 AAACGTCCGCGCGATGGA 62.728 61.111 34.63 18.10 42.83 3.41
2339 2401 4.499023 CAAACGTCCGCGCGATGG 62.499 66.667 34.63 21.19 42.83 3.51
2340 2402 2.757946 AAACAAACGTCCGCGCGATG 62.758 55.000 34.63 23.52 42.83 3.84
2341 2403 2.108344 AAAACAAACGTCCGCGCGAT 62.108 50.000 34.63 11.00 42.83 4.58
2342 2404 1.485838 TAAAACAAACGTCCGCGCGA 61.486 50.000 34.63 15.16 42.83 5.87
2343 2405 0.451463 ATAAAACAAACGTCCGCGCG 60.451 50.000 25.67 25.67 42.83 6.86
2344 2406 1.640434 GAATAAAACAAACGTCCGCGC 59.360 47.619 0.00 0.00 42.83 6.86
2345 2407 1.893689 CGAATAAAACAAACGTCCGCG 59.106 47.619 0.00 0.00 44.93 6.46
2346 2408 2.096318 TCCGAATAAAACAAACGTCCGC 60.096 45.455 0.00 0.00 0.00 5.54
2363 2425 5.419471 CCCTACCCAAACATTTAAAATCCGA 59.581 40.000 0.00 0.00 0.00 4.55
2373 2435 2.187100 CCATTGCCCTACCCAAACATT 58.813 47.619 0.00 0.00 0.00 2.71
2374 2436 1.622173 CCCATTGCCCTACCCAAACAT 60.622 52.381 0.00 0.00 0.00 2.71
2375 2437 0.252012 CCCATTGCCCTACCCAAACA 60.252 55.000 0.00 0.00 0.00 2.83
2460 2522 4.395959 AAATAGACGCGGACAGGATAAA 57.604 40.909 12.47 0.00 0.00 1.40
2462 2524 4.395959 AAAAATAGACGCGGACAGGATA 57.604 40.909 12.47 0.00 0.00 2.59
2506 2571 1.561542 CCTGATGAACTAGGGCTTGGT 59.438 52.381 0.00 0.00 0.00 3.67
2530 2600 2.047274 CGTGATGAACTGGGCCGT 60.047 61.111 0.00 0.00 0.00 5.68
2630 2703 2.975799 GTTGCCGGCGAGGACAAA 60.976 61.111 23.90 5.32 45.00 2.83
2687 2760 1.357334 GTGCCGGCGAGAAAAACAA 59.643 52.632 23.90 0.00 0.00 2.83
2795 2870 2.284798 GAAGGAGATGCTCGACGCCA 62.285 60.000 4.73 0.00 38.05 5.69
2845 2920 1.128692 GGACTTGTCGAAAATGAGCGG 59.871 52.381 0.00 0.00 0.00 5.52
2853 2928 2.542020 TGAGCATGGACTTGTCGAAA 57.458 45.000 0.00 0.00 0.00 3.46
2867 2942 1.820906 GCCCTTGCGATCATGAGCA 60.821 57.895 12.15 8.69 42.15 4.26
2921 2996 1.514553 CAGAGGCAGCTCGACATCA 59.485 57.895 0.00 0.00 0.00 3.07
3117 3192 3.117046 GGACGAGAAGAAGCGATAAAGG 58.883 50.000 0.00 0.00 0.00 3.11
3122 3197 0.741915 GAGGGACGAGAAGAAGCGAT 59.258 55.000 0.00 0.00 0.00 4.58
3123 3198 0.608308 TGAGGGACGAGAAGAAGCGA 60.608 55.000 0.00 0.00 0.00 4.93
3276 3351 2.296471 GAGAGGACTGAAGACGACCAAA 59.704 50.000 0.00 0.00 0.00 3.28
3429 3504 5.820131 TGTTCACTTGTTGTTGATCATGTC 58.180 37.500 0.00 0.00 0.00 3.06
3454 3529 4.575885 ACTTCAGCCGTGTATATGTTTGT 58.424 39.130 0.00 0.00 0.00 2.83
3553 3628 2.415090 GCATTTGAGAGCGTTGAAGCAT 60.415 45.455 0.00 0.00 40.15 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.