Multiple sequence alignment - TraesCS6A01G271000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G271000 chr6A 100.000 6118 0 0 1 6118 497480339 497474222 0.000000e+00 11298.0
1 TraesCS6A01G271000 chr6D 96.144 4123 102 19 1760 5846 346453414 346457515 0.000000e+00 6680.0
2 TraesCS6A01G271000 chr6D 96.306 1191 32 7 587 1776 346451750 346452929 0.000000e+00 1945.0
3 TraesCS6A01G271000 chr6B 94.424 2170 89 18 3950 6113 534952459 534950316 0.000000e+00 3308.0
4 TraesCS6A01G271000 chr6B 96.003 1226 39 6 550 1775 534955793 534954578 0.000000e+00 1984.0
5 TraesCS6A01G271000 chr6B 88.898 1243 63 19 1799 3008 534954586 534953386 0.000000e+00 1461.0
6 TraesCS6A01G271000 chr6B 93.606 391 19 2 2999 3389 534953272 534952888 4.110000e-161 579.0
7 TraesCS6A01G271000 chr6B 89.376 433 31 4 3482 3901 534952888 534952458 1.170000e-146 531.0
8 TraesCS6A01G271000 chr6B 84.783 460 55 7 771 1230 535140544 535140100 1.210000e-121 448.0
9 TraesCS6A01G271000 chr6B 80.734 436 78 4 27 456 535213754 535213319 9.830000e-88 335.0
10 TraesCS6A01G271000 chr7D 79.156 403 71 9 7 400 133241256 133241654 3.640000e-67 267.0
11 TraesCS6A01G271000 chr7D 77.850 307 60 8 1 302 458688023 458688326 3.770000e-42 183.0
12 TraesCS6A01G271000 chr7D 81.176 85 14 2 1078 1161 136583293 136583376 3.960000e-07 67.6
13 TraesCS6A01G271000 chr7D 100.000 31 0 0 6032 6062 14548405 14548435 2.380000e-04 58.4
14 TraesCS6A01G271000 chr5D 91.975 162 7 1 2236 2391 399614521 399614682 7.980000e-54 222.0
15 TraesCS6A01G271000 chr5B 91.975 162 7 1 2236 2391 479726834 479726995 7.980000e-54 222.0
16 TraesCS6A01G271000 chr5B 85.135 74 5 5 4130 4200 455616989 455616919 3.060000e-08 71.3
17 TraesCS6A01G271000 chr1B 90.303 165 10 1 2237 2395 574286997 574286833 1.730000e-50 211.0
18 TraesCS6A01G271000 chr4B 89.634 164 12 2 2236 2394 277316680 277316517 2.890000e-48 204.0
19 TraesCS6A01G271000 chr3A 89.697 165 8 3 2236 2394 675873181 675873020 1.040000e-47 202.0
20 TraesCS6A01G271000 chr4A 89.441 161 12 2 2236 2391 321904003 321904163 1.350000e-46 198.0
21 TraesCS6A01G271000 chr4A 87.500 72 5 3 4130 4200 67536870 67536938 5.080000e-11 80.5
22 TraesCS6A01G271000 chr4A 82.927 82 14 0 1 82 339979926 339979845 2.370000e-09 75.0
23 TraesCS6A01G271000 chr3B 89.873 158 10 3 2243 2394 262201819 262201662 1.350000e-46 198.0
24 TraesCS6A01G271000 chr3B 85.135 74 5 5 4130 4200 669904000 669903930 3.060000e-08 71.3
25 TraesCS6A01G271000 chr7A 78.176 307 59 8 1 302 331816917 331816614 8.100000e-44 189.0
26 TraesCS6A01G271000 chr7A 79.787 94 17 2 6025 6117 620391149 620391057 3.960000e-07 67.6
27 TraesCS6A01G271000 chr7A 94.595 37 2 0 1125 1161 136343012 136343048 2.380000e-04 58.4
28 TraesCS6A01G271000 chr5A 84.810 79 8 3 4129 4206 485195677 485195602 6.580000e-10 76.8
29 TraesCS6A01G271000 chr2B 90.196 51 4 1 6027 6077 643359314 643359363 1.420000e-06 65.8
30 TraesCS6A01G271000 chr2B 87.755 49 6 0 5937 5985 224210848 224210896 2.380000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G271000 chr6A 497474222 497480339 6117 True 11298.0 11298 100.0000 1 6118 1 chr6A.!!$R1 6117
1 TraesCS6A01G271000 chr6D 346451750 346457515 5765 False 4312.5 6680 96.2250 587 5846 2 chr6D.!!$F1 5259
2 TraesCS6A01G271000 chr6B 534950316 534955793 5477 True 1572.6 3308 92.4614 550 6113 5 chr6B.!!$R3 5563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.106708 ATCACCCGTGCGCATATTCT 59.893 50.000 15.91 0.00 0.00 2.40 F
491 492 0.397957 TCTATAGCCCTCCGTTGCCA 60.398 55.000 0.00 0.00 0.00 4.92 F
492 493 0.468226 CTATAGCCCTCCGTTGCCAA 59.532 55.000 0.00 0.00 0.00 4.52 F
494 495 0.679960 ATAGCCCTCCGTTGCCAAAC 60.680 55.000 0.00 0.00 0.00 2.93 F
1180 1181 0.813821 TGATCAGCTGTCTGTCCTCG 59.186 55.000 14.67 0.00 41.10 4.63 F
1216 1217 1.911709 GCTCGCGTAATTTCATCGTGC 60.912 52.381 5.77 5.53 35.51 5.34 F
2582 3123 2.285368 TCGGTCCCTTGCCTGGAT 60.285 61.111 0.00 0.00 33.65 3.41 F
2811 3358 3.058160 GAGGCTTGCATGCGGTGT 61.058 61.111 17.36 3.17 0.00 4.16 F
3450 4120 1.159285 TTTGACGATGGCTTCTGCTG 58.841 50.000 0.00 0.00 39.59 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1340 1342 1.134694 GGAAATCGTTGAGGCGCAC 59.865 57.895 10.83 2.81 0.00 5.34 R
2344 2856 1.059584 TCTCCACTTGTGGCCTGGAA 61.060 55.000 14.49 1.53 33.58 3.53 R
2569 3110 2.683465 GCAGGATCCAGGCAAGGGA 61.683 63.158 20.05 0.00 39.14 4.20 R
2582 3123 4.838152 GATCCCGCTTGCGCAGGA 62.838 66.667 25.12 20.87 46.25 3.86 R
3193 3863 1.754803 TGCTAGGGGTTGTCAGTATCG 59.245 52.381 0.00 0.00 0.00 2.92 R
3246 3916 6.349115 CCAAACAAAATCCATCAGTCAGAGAG 60.349 42.308 0.00 0.00 0.00 3.20 R
3430 4100 1.741706 CAGCAGAAGCCATCGTCAAAT 59.258 47.619 0.00 0.00 43.56 2.32 R
4869 5554 1.667830 TCTTGGACGCTTTGCCGAG 60.668 57.895 0.00 0.00 37.08 4.63 R
5510 6197 0.033504 ACCGACAAAGCTGACACGAT 59.966 50.000 0.00 0.00 0.00 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 9.740239 TTAAAGAATTTATTGAGAGATGCATGC 57.260 29.630 11.82 11.82 40.76 4.06
89 90 7.584122 AAGAATTTATTGAGAGATGCATGCT 57.416 32.000 20.33 0.04 0.00 3.79
90 91 6.971602 AGAATTTATTGAGAGATGCATGCTG 58.028 36.000 20.33 0.00 0.00 4.41
91 92 6.546403 AGAATTTATTGAGAGATGCATGCTGT 59.454 34.615 20.33 7.62 0.00 4.40
92 93 6.710597 ATTTATTGAGAGATGCATGCTGTT 57.289 33.333 20.33 3.46 0.00 3.16
93 94 5.746307 TTATTGAGAGATGCATGCTGTTC 57.254 39.130 20.33 12.89 0.00 3.18
94 95 3.345508 TTGAGAGATGCATGCTGTTCT 57.654 42.857 20.33 17.33 0.00 3.01
95 96 2.629051 TGAGAGATGCATGCTGTTCTG 58.371 47.619 20.33 0.00 0.00 3.02
96 97 1.941294 GAGAGATGCATGCTGTTCTGG 59.059 52.381 20.33 0.00 0.00 3.86
97 98 1.558294 AGAGATGCATGCTGTTCTGGA 59.442 47.619 20.33 0.00 0.00 3.86
98 99 2.026542 AGAGATGCATGCTGTTCTGGAA 60.027 45.455 20.33 0.00 0.00 3.53
99 100 2.355132 GAGATGCATGCTGTTCTGGAAG 59.645 50.000 20.33 0.00 0.00 3.46
100 101 2.026542 AGATGCATGCTGTTCTGGAAGA 60.027 45.455 20.33 0.00 44.68 2.87
121 122 9.521503 GGAAGAGATTAATATTTTGCAAACTCC 57.478 33.333 12.39 1.41 0.00 3.85
132 133 7.967890 ATTTTGCAAACTCCTATGGAAAAAG 57.032 32.000 12.39 0.00 45.56 2.27
133 134 6.723298 TTTGCAAACTCCTATGGAAAAAGA 57.277 33.333 8.05 0.00 34.55 2.52
134 135 6.723298 TTGCAAACTCCTATGGAAAAAGAA 57.277 33.333 0.00 0.00 0.00 2.52
135 136 6.723298 TGCAAACTCCTATGGAAAAAGAAA 57.277 33.333 0.00 0.00 0.00 2.52
136 137 7.301868 TGCAAACTCCTATGGAAAAAGAAAT 57.698 32.000 0.00 0.00 0.00 2.17
137 138 7.734942 TGCAAACTCCTATGGAAAAAGAAATT 58.265 30.769 0.00 0.00 0.00 1.82
138 139 7.656948 TGCAAACTCCTATGGAAAAAGAAATTG 59.343 33.333 0.00 0.00 0.00 2.32
139 140 7.360353 GCAAACTCCTATGGAAAAAGAAATTGC 60.360 37.037 0.00 0.00 0.00 3.56
140 141 7.544804 AACTCCTATGGAAAAAGAAATTGCT 57.455 32.000 0.00 0.00 0.00 3.91
141 142 6.928520 ACTCCTATGGAAAAAGAAATTGCTG 58.071 36.000 0.00 0.00 0.00 4.41
142 143 6.721208 ACTCCTATGGAAAAAGAAATTGCTGA 59.279 34.615 0.00 0.00 0.00 4.26
143 144 7.233348 ACTCCTATGGAAAAAGAAATTGCTGAA 59.767 33.333 0.00 0.00 0.00 3.02
144 145 7.961351 TCCTATGGAAAAAGAAATTGCTGAAA 58.039 30.769 0.00 0.00 0.00 2.69
145 146 7.872483 TCCTATGGAAAAAGAAATTGCTGAAAC 59.128 33.333 0.00 0.00 0.00 2.78
146 147 7.874528 CCTATGGAAAAAGAAATTGCTGAAACT 59.125 33.333 0.00 0.00 0.00 2.66
147 148 9.912634 CTATGGAAAAAGAAATTGCTGAAACTA 57.087 29.630 0.00 0.00 0.00 2.24
148 149 8.593492 ATGGAAAAAGAAATTGCTGAAACTAC 57.407 30.769 0.00 0.00 0.00 2.73
149 150 6.695278 TGGAAAAAGAAATTGCTGAAACTACG 59.305 34.615 0.00 0.00 0.00 3.51
150 151 6.915843 GGAAAAAGAAATTGCTGAAACTACGA 59.084 34.615 0.00 0.00 0.00 3.43
151 152 7.113544 GGAAAAAGAAATTGCTGAAACTACGAG 59.886 37.037 0.00 0.00 0.00 4.18
152 153 4.670227 AGAAATTGCTGAAACTACGAGC 57.330 40.909 0.00 0.00 0.00 5.03
153 154 4.319177 AGAAATTGCTGAAACTACGAGCT 58.681 39.130 0.00 0.00 33.66 4.09
154 155 4.390297 AGAAATTGCTGAAACTACGAGCTC 59.610 41.667 2.73 2.73 33.66 4.09
155 156 2.812358 TTGCTGAAACTACGAGCTCA 57.188 45.000 15.40 0.00 33.66 4.26
156 157 3.319137 TTGCTGAAACTACGAGCTCAT 57.681 42.857 15.40 0.00 33.66 2.90
157 158 3.319137 TGCTGAAACTACGAGCTCATT 57.681 42.857 15.40 1.92 33.66 2.57
158 159 4.450082 TGCTGAAACTACGAGCTCATTA 57.550 40.909 15.40 3.14 33.66 1.90
159 160 4.816392 TGCTGAAACTACGAGCTCATTAA 58.184 39.130 15.40 0.00 33.66 1.40
160 161 5.234752 TGCTGAAACTACGAGCTCATTAAA 58.765 37.500 15.40 0.00 33.66 1.52
161 162 5.874810 TGCTGAAACTACGAGCTCATTAAAT 59.125 36.000 15.40 0.00 33.66 1.40
162 163 6.183360 TGCTGAAACTACGAGCTCATTAAATG 60.183 38.462 15.40 0.00 33.66 2.32
163 164 6.036083 GCTGAAACTACGAGCTCATTAAATGA 59.964 38.462 15.40 0.00 37.76 2.57
164 165 7.413000 GCTGAAACTACGAGCTCATTAAATGAA 60.413 37.037 15.40 0.00 39.11 2.57
165 166 8.317891 TGAAACTACGAGCTCATTAAATGAAA 57.682 30.769 15.40 0.00 39.11 2.69
166 167 8.779303 TGAAACTACGAGCTCATTAAATGAAAA 58.221 29.630 15.40 0.00 39.11 2.29
167 168 9.267096 GAAACTACGAGCTCATTAAATGAAAAG 57.733 33.333 15.40 0.00 39.11 2.27
168 169 8.547967 AACTACGAGCTCATTAAATGAAAAGA 57.452 30.769 15.40 0.00 39.11 2.52
169 170 8.723942 ACTACGAGCTCATTAAATGAAAAGAT 57.276 30.769 15.40 0.00 39.11 2.40
170 171 8.607459 ACTACGAGCTCATTAAATGAAAAGATG 58.393 33.333 15.40 0.00 39.11 2.90
171 172 7.615582 ACGAGCTCATTAAATGAAAAGATGA 57.384 32.000 15.40 0.00 39.11 2.92
172 173 7.692088 ACGAGCTCATTAAATGAAAAGATGAG 58.308 34.615 15.40 7.17 43.99 2.90
173 174 7.130917 CGAGCTCATTAAATGAAAAGATGAGG 58.869 38.462 15.40 0.00 42.35 3.86
174 175 7.344095 AGCTCATTAAATGAAAAGATGAGGG 57.656 36.000 12.07 0.00 42.35 4.30
175 176 6.323225 AGCTCATTAAATGAAAAGATGAGGGG 59.677 38.462 12.07 0.00 42.35 4.79
176 177 6.462067 GCTCATTAAATGAAAAGATGAGGGGG 60.462 42.308 12.07 0.00 42.35 5.40
177 178 6.740693 TCATTAAATGAAAAGATGAGGGGGA 58.259 36.000 0.00 0.00 36.11 4.81
178 179 6.835488 TCATTAAATGAAAAGATGAGGGGGAG 59.165 38.462 0.00 0.00 36.11 4.30
179 180 4.953781 AAATGAAAAGATGAGGGGGAGA 57.046 40.909 0.00 0.00 0.00 3.71
180 181 4.953781 AATGAAAAGATGAGGGGGAGAA 57.046 40.909 0.00 0.00 0.00 2.87
181 182 5.478503 AATGAAAAGATGAGGGGGAGAAT 57.521 39.130 0.00 0.00 0.00 2.40
182 183 4.240881 TGAAAAGATGAGGGGGAGAATG 57.759 45.455 0.00 0.00 0.00 2.67
183 184 3.851976 TGAAAAGATGAGGGGGAGAATGA 59.148 43.478 0.00 0.00 0.00 2.57
184 185 4.292041 TGAAAAGATGAGGGGGAGAATGAA 59.708 41.667 0.00 0.00 0.00 2.57
185 186 4.516652 AAAGATGAGGGGGAGAATGAAG 57.483 45.455 0.00 0.00 0.00 3.02
186 187 3.428063 AGATGAGGGGGAGAATGAAGA 57.572 47.619 0.00 0.00 0.00 2.87
187 188 3.740780 AGATGAGGGGGAGAATGAAGAA 58.259 45.455 0.00 0.00 0.00 2.52
188 189 4.314238 AGATGAGGGGGAGAATGAAGAAT 58.686 43.478 0.00 0.00 0.00 2.40
189 190 5.480710 AGATGAGGGGGAGAATGAAGAATA 58.519 41.667 0.00 0.00 0.00 1.75
190 191 5.913534 AGATGAGGGGGAGAATGAAGAATAA 59.086 40.000 0.00 0.00 0.00 1.40
191 192 6.391055 AGATGAGGGGGAGAATGAAGAATAAA 59.609 38.462 0.00 0.00 0.00 1.40
192 193 6.401537 TGAGGGGGAGAATGAAGAATAAAA 57.598 37.500 0.00 0.00 0.00 1.52
193 194 6.426587 TGAGGGGGAGAATGAAGAATAAAAG 58.573 40.000 0.00 0.00 0.00 2.27
194 195 5.770919 AGGGGGAGAATGAAGAATAAAAGG 58.229 41.667 0.00 0.00 0.00 3.11
195 196 5.496168 AGGGGGAGAATGAAGAATAAAAGGA 59.504 40.000 0.00 0.00 0.00 3.36
196 197 5.830457 GGGGGAGAATGAAGAATAAAAGGAG 59.170 44.000 0.00 0.00 0.00 3.69
197 198 6.353951 GGGGGAGAATGAAGAATAAAAGGAGA 60.354 42.308 0.00 0.00 0.00 3.71
198 199 7.119387 GGGGAGAATGAAGAATAAAAGGAGAA 58.881 38.462 0.00 0.00 0.00 2.87
199 200 7.615757 GGGGAGAATGAAGAATAAAAGGAGAAA 59.384 37.037 0.00 0.00 0.00 2.52
200 201 9.025041 GGGAGAATGAAGAATAAAAGGAGAAAA 57.975 33.333 0.00 0.00 0.00 2.29
205 206 9.987272 AATGAAGAATAAAAGGAGAAAAAGTGG 57.013 29.630 0.00 0.00 0.00 4.00
206 207 8.760980 TGAAGAATAAAAGGAGAAAAAGTGGA 57.239 30.769 0.00 0.00 0.00 4.02
207 208 9.367160 TGAAGAATAAAAGGAGAAAAAGTGGAT 57.633 29.630 0.00 0.00 0.00 3.41
209 210 9.987272 AAGAATAAAAGGAGAAAAAGTGGATTG 57.013 29.630 0.00 0.00 0.00 2.67
210 211 9.367160 AGAATAAAAGGAGAAAAAGTGGATTGA 57.633 29.630 0.00 0.00 0.00 2.57
213 214 7.601705 AAAAGGAGAAAAAGTGGATTGATCA 57.398 32.000 0.00 0.00 0.00 2.92
214 215 6.581171 AAGGAGAAAAAGTGGATTGATCAC 57.419 37.500 0.00 0.00 35.51 3.06
215 216 5.012893 AGGAGAAAAAGTGGATTGATCACC 58.987 41.667 0.00 0.00 35.87 4.02
216 217 4.158579 GGAGAAAAAGTGGATTGATCACCC 59.841 45.833 0.00 0.00 35.87 4.61
217 218 3.758554 AGAAAAAGTGGATTGATCACCCG 59.241 43.478 0.00 0.00 35.87 5.28
218 219 2.879103 AAAGTGGATTGATCACCCGT 57.121 45.000 0.00 0.00 35.87 5.28
219 220 2.113860 AAGTGGATTGATCACCCGTG 57.886 50.000 0.00 0.00 35.87 4.94
220 221 0.392998 AGTGGATTGATCACCCGTGC 60.393 55.000 0.00 0.00 35.87 5.34
221 222 1.449423 TGGATTGATCACCCGTGCG 60.449 57.895 0.00 0.00 0.00 5.34
222 223 2.709475 GATTGATCACCCGTGCGC 59.291 61.111 0.00 0.00 0.00 6.09
223 224 2.046411 ATTGATCACCCGTGCGCA 60.046 55.556 5.66 5.66 0.00 6.09
224 225 1.439353 GATTGATCACCCGTGCGCAT 61.439 55.000 15.91 0.00 0.00 4.73
225 226 0.179059 ATTGATCACCCGTGCGCATA 60.179 50.000 15.91 0.00 0.00 3.14
226 227 0.179059 TTGATCACCCGTGCGCATAT 60.179 50.000 15.91 0.29 0.00 1.78
227 228 0.179059 TGATCACCCGTGCGCATATT 60.179 50.000 15.91 0.00 0.00 1.28
228 229 0.512952 GATCACCCGTGCGCATATTC 59.487 55.000 15.91 0.00 0.00 1.75
229 230 0.106708 ATCACCCGTGCGCATATTCT 59.893 50.000 15.91 0.00 0.00 2.40
230 231 0.747852 TCACCCGTGCGCATATTCTA 59.252 50.000 15.91 0.00 0.00 2.10
231 232 1.137282 TCACCCGTGCGCATATTCTAA 59.863 47.619 15.91 0.00 0.00 2.10
232 233 1.526887 CACCCGTGCGCATATTCTAAG 59.473 52.381 15.91 0.00 0.00 2.18
233 234 1.411246 ACCCGTGCGCATATTCTAAGA 59.589 47.619 15.91 0.00 0.00 2.10
234 235 2.159014 ACCCGTGCGCATATTCTAAGAA 60.159 45.455 15.91 0.00 0.00 2.52
235 236 2.476619 CCCGTGCGCATATTCTAAGAAG 59.523 50.000 15.91 0.00 0.00 2.85
236 237 3.381045 CCGTGCGCATATTCTAAGAAGA 58.619 45.455 15.91 0.00 0.00 2.87
237 238 3.802139 CCGTGCGCATATTCTAAGAAGAA 59.198 43.478 15.91 0.00 45.63 2.52
287 288 9.936759 TTAATTTTTCTTTATGCTTACCCAAGG 57.063 29.630 0.00 0.00 31.96 3.61
288 289 7.790782 ATTTTTCTTTATGCTTACCCAAGGA 57.209 32.000 0.00 0.00 36.45 3.36
289 290 7.790782 TTTTTCTTTATGCTTACCCAAGGAT 57.209 32.000 0.00 0.00 44.22 3.24
290 291 6.773976 TTTCTTTATGCTTACCCAAGGATG 57.226 37.500 2.10 0.00 42.24 3.51
291 292 5.708736 TCTTTATGCTTACCCAAGGATGA 57.291 39.130 2.10 0.00 42.24 2.92
292 293 6.073447 TCTTTATGCTTACCCAAGGATGAA 57.927 37.500 2.10 0.01 42.24 2.57
293 294 6.672593 TCTTTATGCTTACCCAAGGATGAAT 58.327 36.000 2.10 0.00 42.24 2.57
294 295 6.547141 TCTTTATGCTTACCCAAGGATGAATG 59.453 38.462 2.10 0.00 42.24 2.67
295 296 2.378038 TGCTTACCCAAGGATGAATGC 58.622 47.619 0.00 0.00 31.96 3.56
296 297 2.025037 TGCTTACCCAAGGATGAATGCT 60.025 45.455 0.00 0.00 31.96 3.79
297 298 3.026694 GCTTACCCAAGGATGAATGCTT 58.973 45.455 0.00 0.00 39.13 3.91
298 299 3.448660 GCTTACCCAAGGATGAATGCTTT 59.551 43.478 0.00 0.00 36.24 3.51
299 300 4.678840 GCTTACCCAAGGATGAATGCTTTG 60.679 45.833 0.00 0.00 36.24 2.77
300 301 3.173953 ACCCAAGGATGAATGCTTTGA 57.826 42.857 0.00 0.00 36.24 2.69
301 302 3.716431 ACCCAAGGATGAATGCTTTGAT 58.284 40.909 0.00 0.00 36.24 2.57
302 303 3.703052 ACCCAAGGATGAATGCTTTGATC 59.297 43.478 3.59 3.59 36.24 2.92
303 304 3.069158 CCCAAGGATGAATGCTTTGATCC 59.931 47.826 19.15 19.15 43.68 3.36
304 305 3.069158 CCAAGGATGAATGCTTTGATCCC 59.931 47.826 21.90 8.85 44.22 3.85
305 306 3.958798 CAAGGATGAATGCTTTGATCCCT 59.041 43.478 21.90 10.71 44.22 4.20
306 307 4.261411 AGGATGAATGCTTTGATCCCTT 57.739 40.909 21.90 6.90 44.22 3.95
307 308 3.958798 AGGATGAATGCTTTGATCCCTTG 59.041 43.478 21.90 0.00 44.22 3.61
308 309 3.956199 GGATGAATGCTTTGATCCCTTGA 59.044 43.478 16.86 0.00 39.09 3.02
309 310 4.403432 GGATGAATGCTTTGATCCCTTGAA 59.597 41.667 16.86 0.00 39.09 2.69
310 311 5.070047 GGATGAATGCTTTGATCCCTTGAAT 59.930 40.000 16.86 0.00 39.09 2.57
311 312 6.407752 GGATGAATGCTTTGATCCCTTGAATT 60.408 38.462 16.86 0.00 39.09 2.17
312 313 5.969423 TGAATGCTTTGATCCCTTGAATTC 58.031 37.500 0.00 0.00 0.00 2.17
313 314 4.644103 ATGCTTTGATCCCTTGAATTCG 57.356 40.909 0.04 0.00 0.00 3.34
314 315 3.420893 TGCTTTGATCCCTTGAATTCGT 58.579 40.909 0.04 0.00 0.00 3.85
315 316 3.826157 TGCTTTGATCCCTTGAATTCGTT 59.174 39.130 0.04 0.00 0.00 3.85
316 317 4.280677 TGCTTTGATCCCTTGAATTCGTTT 59.719 37.500 0.04 0.00 0.00 3.60
317 318 4.622740 GCTTTGATCCCTTGAATTCGTTTG 59.377 41.667 0.04 0.00 0.00 2.93
318 319 5.564651 GCTTTGATCCCTTGAATTCGTTTGA 60.565 40.000 0.04 0.00 0.00 2.69
319 320 6.398234 TTTGATCCCTTGAATTCGTTTGAA 57.602 33.333 0.04 0.00 38.76 2.69
320 321 6.398234 TTGATCCCTTGAATTCGTTTGAAA 57.602 33.333 0.04 0.00 37.71 2.69
321 322 6.588719 TGATCCCTTGAATTCGTTTGAAAT 57.411 33.333 0.04 0.00 37.71 2.17
322 323 7.695480 TGATCCCTTGAATTCGTTTGAAATA 57.305 32.000 0.04 0.00 37.71 1.40
323 324 8.292444 TGATCCCTTGAATTCGTTTGAAATAT 57.708 30.769 0.04 0.00 37.71 1.28
324 325 8.405531 TGATCCCTTGAATTCGTTTGAAATATC 58.594 33.333 0.04 0.00 37.71 1.63
325 326 7.938140 TCCCTTGAATTCGTTTGAAATATCT 57.062 32.000 0.04 0.00 37.71 1.98
326 327 8.348285 TCCCTTGAATTCGTTTGAAATATCTT 57.652 30.769 0.04 0.00 37.71 2.40
327 328 8.802267 TCCCTTGAATTCGTTTGAAATATCTTT 58.198 29.630 0.04 0.00 37.71 2.52
328 329 9.423061 CCCTTGAATTCGTTTGAAATATCTTTT 57.577 29.630 0.04 0.00 37.71 2.27
348 349 5.694674 TTTTTGATGAACTTGACGTTTGC 57.305 34.783 0.00 0.00 35.56 3.68
349 350 4.630894 TTTGATGAACTTGACGTTTGCT 57.369 36.364 0.00 0.00 35.56 3.91
350 351 5.743026 TTTGATGAACTTGACGTTTGCTA 57.257 34.783 0.00 0.00 35.56 3.49
351 352 5.940192 TTGATGAACTTGACGTTTGCTAT 57.060 34.783 0.00 0.00 35.56 2.97
352 353 5.281693 TGATGAACTTGACGTTTGCTATG 57.718 39.130 0.00 0.00 35.56 2.23
353 354 4.754618 TGATGAACTTGACGTTTGCTATGT 59.245 37.500 0.00 0.00 35.56 2.29
354 355 5.238432 TGATGAACTTGACGTTTGCTATGTT 59.762 36.000 0.00 0.00 35.56 2.71
355 356 5.493133 TGAACTTGACGTTTGCTATGTTT 57.507 34.783 0.00 0.00 35.56 2.83
356 357 6.606234 TGAACTTGACGTTTGCTATGTTTA 57.394 33.333 0.00 0.00 35.56 2.01
357 358 7.197071 TGAACTTGACGTTTGCTATGTTTAT 57.803 32.000 0.00 0.00 35.56 1.40
358 359 7.075121 TGAACTTGACGTTTGCTATGTTTATG 58.925 34.615 0.00 0.00 35.56 1.90
359 360 6.554334 ACTTGACGTTTGCTATGTTTATGT 57.446 33.333 0.00 0.00 0.00 2.29
360 361 6.599437 ACTTGACGTTTGCTATGTTTATGTC 58.401 36.000 0.00 0.00 0.00 3.06
361 362 6.203915 ACTTGACGTTTGCTATGTTTATGTCA 59.796 34.615 0.00 0.00 34.08 3.58
362 363 6.735678 TGACGTTTGCTATGTTTATGTCAT 57.264 33.333 0.00 0.00 31.74 3.06
363 364 6.541969 TGACGTTTGCTATGTTTATGTCATG 58.458 36.000 0.00 0.00 31.74 3.07
364 365 6.370166 TGACGTTTGCTATGTTTATGTCATGA 59.630 34.615 0.00 0.00 31.74 3.07
365 366 6.542852 ACGTTTGCTATGTTTATGTCATGAC 58.457 36.000 19.27 19.27 0.00 3.06
366 367 5.672426 CGTTTGCTATGTTTATGTCATGACG 59.328 40.000 20.54 4.46 0.00 4.35
367 368 6.454981 CGTTTGCTATGTTTATGTCATGACGA 60.455 38.462 20.54 8.69 0.00 4.20
368 369 7.409697 GTTTGCTATGTTTATGTCATGACGAT 58.590 34.615 20.54 16.24 0.00 3.73
369 370 8.547894 GTTTGCTATGTTTATGTCATGACGATA 58.452 33.333 20.54 15.34 0.00 2.92
370 371 8.831715 TTGCTATGTTTATGTCATGACGATAT 57.168 30.769 20.54 11.33 0.00 1.63
371 372 8.243289 TGCTATGTTTATGTCATGACGATATG 57.757 34.615 20.54 6.09 0.00 1.78
372 373 8.087750 TGCTATGTTTATGTCATGACGATATGA 58.912 33.333 20.54 2.48 34.83 2.15
373 374 8.925700 GCTATGTTTATGTCATGACGATATGAA 58.074 33.333 20.54 9.15 38.69 2.57
376 377 8.885494 TGTTTATGTCATGACGATATGAATGA 57.115 30.769 20.54 1.29 38.69 2.57
377 378 9.492973 TGTTTATGTCATGACGATATGAATGAT 57.507 29.630 20.54 7.21 38.69 2.45
378 379 9.750882 GTTTATGTCATGACGATATGAATGATG 57.249 33.333 20.54 0.00 38.69 3.07
379 380 5.851047 TGTCATGACGATATGAATGATGC 57.149 39.130 20.54 0.00 38.69 3.91
380 381 5.544650 TGTCATGACGATATGAATGATGCT 58.455 37.500 20.54 0.00 38.69 3.79
381 382 5.993441 TGTCATGACGATATGAATGATGCTT 59.007 36.000 20.54 0.00 38.69 3.91
382 383 7.153985 TGTCATGACGATATGAATGATGCTTA 58.846 34.615 20.54 0.00 38.69 3.09
383 384 7.820872 TGTCATGACGATATGAATGATGCTTAT 59.179 33.333 20.54 0.00 38.69 1.73
384 385 8.114905 GTCATGACGATATGAATGATGCTTATG 58.885 37.037 10.69 0.00 38.69 1.90
385 386 8.036575 TCATGACGATATGAATGATGCTTATGA 58.963 33.333 0.00 0.00 34.32 2.15
386 387 8.662141 CATGACGATATGAATGATGCTTATGAA 58.338 33.333 0.00 0.00 0.00 2.57
387 388 8.248117 TGACGATATGAATGATGCTTATGAAG 57.752 34.615 0.00 0.00 0.00 3.02
388 389 8.090214 TGACGATATGAATGATGCTTATGAAGA 58.910 33.333 0.00 0.00 0.00 2.87
389 390 9.096160 GACGATATGAATGATGCTTATGAAGAT 57.904 33.333 0.00 0.00 0.00 2.40
414 415 7.848223 AAATTTGCTACAAAATCTAATGGGC 57.152 32.000 0.00 0.00 0.00 5.36
415 416 6.796785 ATTTGCTACAAAATCTAATGGGCT 57.203 33.333 0.00 0.00 0.00 5.19
416 417 5.581126 TTGCTACAAAATCTAATGGGCTG 57.419 39.130 0.00 0.00 0.00 4.85
417 418 3.953612 TGCTACAAAATCTAATGGGCTGG 59.046 43.478 0.00 0.00 0.00 4.85
418 419 3.954258 GCTACAAAATCTAATGGGCTGGT 59.046 43.478 0.00 0.00 0.00 4.00
419 420 4.402474 GCTACAAAATCTAATGGGCTGGTT 59.598 41.667 0.00 0.00 0.00 3.67
420 421 5.105351 GCTACAAAATCTAATGGGCTGGTTT 60.105 40.000 0.00 0.00 0.00 3.27
421 422 5.405935 ACAAAATCTAATGGGCTGGTTTC 57.594 39.130 0.00 0.00 0.00 2.78
422 423 4.837860 ACAAAATCTAATGGGCTGGTTTCA 59.162 37.500 0.00 0.00 0.00 2.69
423 424 5.484998 ACAAAATCTAATGGGCTGGTTTCAT 59.515 36.000 0.00 0.00 0.00 2.57
424 425 5.859205 AAATCTAATGGGCTGGTTTCATC 57.141 39.130 0.00 0.00 0.00 2.92
425 426 4.524802 ATCTAATGGGCTGGTTTCATCA 57.475 40.909 0.00 0.00 0.00 3.07
426 427 4.524802 TCTAATGGGCTGGTTTCATCAT 57.475 40.909 0.00 0.00 0.00 2.45
427 428 5.645056 TCTAATGGGCTGGTTTCATCATA 57.355 39.130 0.00 0.00 0.00 2.15
428 429 6.012337 TCTAATGGGCTGGTTTCATCATAA 57.988 37.500 0.00 0.00 0.00 1.90
429 430 6.430864 TCTAATGGGCTGGTTTCATCATAAA 58.569 36.000 0.00 0.00 0.00 1.40
430 431 5.603170 AATGGGCTGGTTTCATCATAAAG 57.397 39.130 0.00 0.00 0.00 1.85
431 432 4.314522 TGGGCTGGTTTCATCATAAAGA 57.685 40.909 0.00 0.00 0.00 2.52
432 433 4.671831 TGGGCTGGTTTCATCATAAAGAA 58.328 39.130 0.00 0.00 0.00 2.52
433 434 4.462483 TGGGCTGGTTTCATCATAAAGAAC 59.538 41.667 0.00 0.00 0.00 3.01
434 435 4.142160 GGGCTGGTTTCATCATAAAGAACC 60.142 45.833 0.00 0.00 0.00 3.62
435 436 4.706962 GGCTGGTTTCATCATAAAGAACCT 59.293 41.667 5.32 0.00 0.00 3.50
436 437 5.393461 GGCTGGTTTCATCATAAAGAACCTG 60.393 44.000 5.32 5.79 0.00 4.00
437 438 5.643379 TGGTTTCATCATAAAGAACCTGC 57.357 39.130 5.32 0.00 0.00 4.85
438 439 4.462483 TGGTTTCATCATAAAGAACCTGCC 59.538 41.667 5.32 0.00 0.00 4.85
439 440 4.462483 GGTTTCATCATAAAGAACCTGCCA 59.538 41.667 0.00 0.00 0.00 4.92
440 441 5.127682 GGTTTCATCATAAAGAACCTGCCAT 59.872 40.000 0.00 0.00 0.00 4.40
441 442 6.351286 GGTTTCATCATAAAGAACCTGCCATT 60.351 38.462 0.00 0.00 0.00 3.16
442 443 6.855763 TTCATCATAAAGAACCTGCCATTT 57.144 33.333 0.00 0.00 0.00 2.32
443 444 6.455360 TCATCATAAAGAACCTGCCATTTC 57.545 37.500 0.00 0.00 0.00 2.17
444 445 5.951148 TCATCATAAAGAACCTGCCATTTCA 59.049 36.000 0.00 0.00 0.00 2.69
445 446 5.902613 TCATAAAGAACCTGCCATTTCAG 57.097 39.130 0.00 0.00 0.00 3.02
446 447 5.569355 TCATAAAGAACCTGCCATTTCAGA 58.431 37.500 0.00 0.00 36.19 3.27
447 448 6.189859 TCATAAAGAACCTGCCATTTCAGAT 58.810 36.000 0.00 0.00 36.19 2.90
448 449 6.664816 TCATAAAGAACCTGCCATTTCAGATT 59.335 34.615 0.00 0.00 36.19 2.40
449 450 4.796038 AAGAACCTGCCATTTCAGATTG 57.204 40.909 0.00 0.00 36.19 2.67
450 451 3.094572 AGAACCTGCCATTTCAGATTGG 58.905 45.455 0.00 0.00 36.19 3.16
458 459 3.535561 CCATTTCAGATTGGCTAGTCGT 58.464 45.455 0.00 0.00 0.00 4.34
459 460 3.310774 CCATTTCAGATTGGCTAGTCGTG 59.689 47.826 0.00 0.00 0.00 4.35
460 461 3.953712 TTTCAGATTGGCTAGTCGTGA 57.046 42.857 0.00 0.00 0.00 4.35
461 462 4.471904 TTTCAGATTGGCTAGTCGTGAT 57.528 40.909 0.00 0.00 0.00 3.06
462 463 5.592104 TTTCAGATTGGCTAGTCGTGATA 57.408 39.130 0.00 0.00 0.00 2.15
463 464 4.837896 TCAGATTGGCTAGTCGTGATAG 57.162 45.455 0.00 0.00 0.00 2.08
464 465 4.461198 TCAGATTGGCTAGTCGTGATAGA 58.539 43.478 0.00 0.00 0.00 1.98
465 466 4.517075 TCAGATTGGCTAGTCGTGATAGAG 59.483 45.833 0.00 0.00 0.00 2.43
466 467 4.517075 CAGATTGGCTAGTCGTGATAGAGA 59.483 45.833 0.00 0.00 0.00 3.10
467 468 5.182950 CAGATTGGCTAGTCGTGATAGAGAT 59.817 44.000 0.00 0.00 0.00 2.75
468 469 5.772672 AGATTGGCTAGTCGTGATAGAGATT 59.227 40.000 0.00 0.00 0.00 2.40
469 470 5.854010 TTGGCTAGTCGTGATAGAGATTT 57.146 39.130 0.00 0.00 0.00 2.17
470 471 5.854010 TGGCTAGTCGTGATAGAGATTTT 57.146 39.130 0.00 0.00 0.00 1.82
471 472 6.222038 TGGCTAGTCGTGATAGAGATTTTT 57.778 37.500 0.00 0.00 0.00 1.94
489 490 2.614829 TTTCTATAGCCCTCCGTTGC 57.385 50.000 0.00 0.00 0.00 4.17
490 491 0.756903 TTCTATAGCCCTCCGTTGCC 59.243 55.000 0.00 0.00 0.00 4.52
491 492 0.397957 TCTATAGCCCTCCGTTGCCA 60.398 55.000 0.00 0.00 0.00 4.92
492 493 0.468226 CTATAGCCCTCCGTTGCCAA 59.532 55.000 0.00 0.00 0.00 4.52
493 494 0.913205 TATAGCCCTCCGTTGCCAAA 59.087 50.000 0.00 0.00 0.00 3.28
494 495 0.679960 ATAGCCCTCCGTTGCCAAAC 60.680 55.000 0.00 0.00 0.00 2.93
495 496 2.058125 TAGCCCTCCGTTGCCAAACA 62.058 55.000 0.00 0.00 35.94 2.83
496 497 2.494530 GCCCTCCGTTGCCAAACAA 61.495 57.895 0.00 0.00 35.94 2.83
497 498 1.815817 GCCCTCCGTTGCCAAACAAT 61.816 55.000 0.00 0.00 41.27 2.71
498 499 1.540267 CCCTCCGTTGCCAAACAATA 58.460 50.000 0.00 0.00 41.27 1.90
499 500 2.099405 CCCTCCGTTGCCAAACAATAT 58.901 47.619 0.00 0.00 41.27 1.28
500 501 2.495669 CCCTCCGTTGCCAAACAATATT 59.504 45.455 0.00 0.00 41.27 1.28
501 502 3.697045 CCCTCCGTTGCCAAACAATATTA 59.303 43.478 0.00 0.00 41.27 0.98
502 503 4.158764 CCCTCCGTTGCCAAACAATATTAA 59.841 41.667 0.00 0.00 41.27 1.40
503 504 5.336849 CCCTCCGTTGCCAAACAATATTAAA 60.337 40.000 0.00 0.00 41.27 1.52
504 505 5.804979 CCTCCGTTGCCAAACAATATTAAAG 59.195 40.000 0.00 0.00 41.27 1.85
505 506 6.349777 CCTCCGTTGCCAAACAATATTAAAGA 60.350 38.462 0.00 0.00 41.27 2.52
506 507 6.616947 TCCGTTGCCAAACAATATTAAAGAG 58.383 36.000 0.00 0.00 41.27 2.85
507 508 5.804979 CCGTTGCCAAACAATATTAAAGAGG 59.195 40.000 0.00 0.00 41.27 3.69
508 509 6.386654 CGTTGCCAAACAATATTAAAGAGGT 58.613 36.000 0.00 0.00 41.27 3.85
509 510 7.362229 CCGTTGCCAAACAATATTAAAGAGGTA 60.362 37.037 0.00 0.00 41.27 3.08
510 511 7.483691 CGTTGCCAAACAATATTAAAGAGGTAC 59.516 37.037 0.00 0.00 41.27 3.34
511 512 8.520351 GTTGCCAAACAATATTAAAGAGGTACT 58.480 33.333 0.00 0.00 41.35 2.73
512 513 8.736244 TTGCCAAACAATATTAAAGAGGTACTC 58.264 33.333 0.00 0.00 45.04 2.59
582 583 1.295645 CGTTATCGTGTTTCGGCGC 60.296 57.895 0.00 0.00 40.32 6.53
822 823 6.323739 TCCCATGGAATAATAAAGAAACTGGC 59.676 38.462 15.22 0.00 0.00 4.85
882 883 2.905681 CTGCCCTTACCGTACCCC 59.094 66.667 0.00 0.00 0.00 4.95
1180 1181 0.813821 TGATCAGCTGTCTGTCCTCG 59.186 55.000 14.67 0.00 41.10 4.63
1216 1217 1.911709 GCTCGCGTAATTTCATCGTGC 60.912 52.381 5.77 5.53 35.51 5.34
1340 1342 5.334414 GCTGGTGTCACTTTCTGAATTACTG 60.334 44.000 2.35 0.00 0.00 2.74
1343 1345 5.444122 GTGTCACTTTCTGAATTACTGTGC 58.556 41.667 0.00 0.00 0.00 4.57
1347 1349 2.472695 TTCTGAATTACTGTGCGCCT 57.527 45.000 4.18 0.00 0.00 5.52
1548 1550 2.291540 CCTGGATGAGGCCCTTTAAACA 60.292 50.000 0.00 0.00 34.01 2.83
2325 2837 4.388577 ACCCTTTAATTCTGCAAGGAGT 57.611 40.909 0.00 0.00 39.73 3.85
2582 3123 2.285368 TCGGTCCCTTGCCTGGAT 60.285 61.111 0.00 0.00 33.65 3.41
2811 3358 3.058160 GAGGCTTGCATGCGGTGT 61.058 61.111 17.36 3.17 0.00 4.16
3037 3707 6.615264 TCTAACCAGTCGCTAGTAGTATTG 57.385 41.667 0.00 0.00 0.00 1.90
3073 3743 3.632145 CGTTATTGGAGAAATGGGGAAGG 59.368 47.826 0.00 0.00 0.00 3.46
3193 3863 5.449451 GCAATTTTCATGGCAAATCATTCCC 60.449 40.000 0.00 0.00 0.00 3.97
3414 4084 5.431179 TTCCTGTTCTCTGTAATTACCCC 57.569 43.478 13.01 0.00 0.00 4.95
3423 4093 8.509690 GTTCTCTGTAATTACCCCACTTTTTAC 58.490 37.037 13.01 0.00 0.00 2.01
3430 4100 5.934402 TTACCCCACTTTTTACTTGCAAA 57.066 34.783 0.00 0.00 0.00 3.68
3450 4120 1.159285 TTTGACGATGGCTTCTGCTG 58.841 50.000 0.00 0.00 39.59 4.41
3501 4171 6.881065 AGCTCTTTATTGTGCAGATTTGACTA 59.119 34.615 0.00 0.00 0.00 2.59
3629 4308 3.967987 AGGTCAGTGTTCTAGTTGTCCTT 59.032 43.478 0.00 0.00 0.00 3.36
3814 4497 9.956720 ATGAACTTCTGAAAGATTGTGTAAAAG 57.043 29.630 0.00 0.00 46.36 2.27
3822 4505 6.542005 TGAAAGATTGTGTAAAAGACTGCTGA 59.458 34.615 0.00 0.00 0.00 4.26
3930 4613 5.525378 CAGGTCTCATGCCTAAATTGTAGAC 59.475 44.000 0.00 0.00 34.45 2.59
4580 5265 1.222936 GCCATGCTACTCTGCAGGT 59.777 57.895 15.13 13.13 46.71 4.00
4869 5554 2.872858 ACCAGTGAAGCGAAGAAAGAAC 59.127 45.455 0.00 0.00 0.00 3.01
4917 5602 5.313712 AGTCAAATTCATCCTTGGTACGTT 58.686 37.500 0.00 0.00 0.00 3.99
4923 5608 4.978083 TCATCCTTGGTACGTTAGACTC 57.022 45.455 0.00 0.00 0.00 3.36
4970 5655 9.043548 ACTGTTCTAGCTATTTTCTTTACCCTA 57.956 33.333 0.00 0.00 0.00 3.53
5020 5705 2.689983 GCTTATGGTGATCTTTGGGGTG 59.310 50.000 0.00 0.00 0.00 4.61
5063 5748 2.542020 TTTGGCATCTTGAGACACGA 57.458 45.000 0.00 0.00 0.00 4.35
5073 5758 5.134202 TCTTGAGACACGAATGCTTAGAA 57.866 39.130 0.00 0.00 0.00 2.10
5088 5773 2.710096 TAGAAGCCTATTGGTGCACC 57.290 50.000 29.67 29.67 35.27 5.01
5182 5867 7.500992 ACATTTTCTTTTTCTCCCCTCTTTTC 58.499 34.615 0.00 0.00 0.00 2.29
5259 5945 1.270839 GCTTGCCCTGAGTGAACAGTA 60.271 52.381 0.00 0.00 36.30 2.74
5262 5948 3.788227 TGCCCTGAGTGAACAGTAATT 57.212 42.857 0.00 0.00 36.30 1.40
5334 6021 7.516198 AACTTGACATTCTGTAAGCATTTCT 57.484 32.000 0.00 0.00 0.00 2.52
5346 6033 8.883731 TCTGTAAGCATTTCTACTGAATAAAGC 58.116 33.333 0.00 0.00 31.56 3.51
5406 6093 4.970003 GTCTTGAAACACTTGATTGGAACG 59.030 41.667 0.00 0.00 0.00 3.95
5429 6116 3.690139 TGTTCGTCCTAAGCAACAAACAA 59.310 39.130 0.00 0.00 0.00 2.83
5449 6136 0.946221 GCGACAAGTCCTGGTGTCTG 60.946 60.000 12.42 8.17 41.65 3.51
5453 6140 3.541632 GACAAGTCCTGGTGTCTGAAAA 58.458 45.455 8.28 0.00 40.82 2.29
5509 6196 2.023888 AGAGCAAACTAGAGGCCTCCTA 60.024 50.000 29.54 18.40 31.76 2.94
5510 6197 2.766828 GAGCAAACTAGAGGCCTCCTAA 59.233 50.000 29.54 14.16 31.76 2.69
5528 6215 1.148310 AATCGTGTCAGCTTTGTCGG 58.852 50.000 0.00 0.00 0.00 4.79
5586 6273 9.126151 TCCATCTCTTAGCTAGATTATTATCCG 57.874 37.037 0.00 0.00 31.22 4.18
5623 6310 7.731054 TGCTTATAAAACACAACCAAAGGAAT 58.269 30.769 0.00 0.00 0.00 3.01
5690 6381 2.224523 GGTGAGACCACATGTCCAAAGA 60.225 50.000 0.00 0.00 45.68 2.52
5769 6462 5.306678 AGACTGGGCAATCTCTATAAGAAGG 59.693 44.000 0.00 0.00 37.61 3.46
5822 6515 8.530269 CAATTTTTGCTAATCTCAGAAAAGCT 57.470 30.769 11.73 0.00 34.28 3.74
5846 6539 6.358974 TCACATCTACACATCTCCTGAAAA 57.641 37.500 0.00 0.00 0.00 2.29
5847 6540 6.401394 TCACATCTACACATCTCCTGAAAAG 58.599 40.000 0.00 0.00 0.00 2.27
5891 6585 3.456277 AGACCTGGGATACTGAACAATCC 59.544 47.826 0.00 0.00 40.89 3.01
5953 6647 0.105778 GCTCAGGCTCATCTACACCC 59.894 60.000 0.00 0.00 35.22 4.61
6023 6719 1.146930 GGCATCCAAGATGCTCGGA 59.853 57.895 24.33 0.00 44.02 4.55
6051 6747 4.024133 GGCAAATTTTCATGGTGTTTGGAC 60.024 41.667 12.36 0.00 32.08 4.02
6055 6751 6.423776 AATTTTCATGGTGTTTGGACATCT 57.576 33.333 0.00 0.00 37.78 2.90
6078 6774 4.887071 TGAGGAGCTCTAGCAAAACAAAAA 59.113 37.500 14.64 0.00 45.16 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 9.740239 GCATGCATCTCTCAATAAATTCTTTAA 57.260 29.630 14.21 0.00 0.00 1.52
63 64 9.128404 AGCATGCATCTCTCAATAAATTCTTTA 57.872 29.630 21.98 0.00 0.00 1.85
64 65 7.921214 CAGCATGCATCTCTCAATAAATTCTTT 59.079 33.333 21.98 0.00 0.00 2.52
65 66 7.068348 ACAGCATGCATCTCTCAATAAATTCTT 59.932 33.333 21.98 0.00 42.53 2.52
66 67 6.546403 ACAGCATGCATCTCTCAATAAATTCT 59.454 34.615 21.98 0.00 42.53 2.40
67 68 6.736123 ACAGCATGCATCTCTCAATAAATTC 58.264 36.000 21.98 0.00 42.53 2.17
68 69 6.710597 ACAGCATGCATCTCTCAATAAATT 57.289 33.333 21.98 0.00 42.53 1.82
69 70 6.546403 AGAACAGCATGCATCTCTCAATAAAT 59.454 34.615 21.98 0.00 42.53 1.40
70 71 5.884232 AGAACAGCATGCATCTCTCAATAAA 59.116 36.000 21.98 0.00 42.53 1.40
71 72 5.296035 CAGAACAGCATGCATCTCTCAATAA 59.704 40.000 21.98 0.00 42.53 1.40
72 73 4.814771 CAGAACAGCATGCATCTCTCAATA 59.185 41.667 21.98 0.00 42.53 1.90
73 74 3.628032 CAGAACAGCATGCATCTCTCAAT 59.372 43.478 21.98 0.00 42.53 2.57
74 75 3.007635 CAGAACAGCATGCATCTCTCAA 58.992 45.455 21.98 0.00 42.53 3.02
75 76 2.629051 CAGAACAGCATGCATCTCTCA 58.371 47.619 21.98 0.00 42.53 3.27
76 77 1.941294 CCAGAACAGCATGCATCTCTC 59.059 52.381 21.98 8.68 42.53 3.20
77 78 1.558294 TCCAGAACAGCATGCATCTCT 59.442 47.619 21.98 14.46 42.53 3.10
78 79 2.034104 TCCAGAACAGCATGCATCTC 57.966 50.000 21.98 12.33 42.53 2.75
79 80 2.026542 TCTTCCAGAACAGCATGCATCT 60.027 45.455 21.98 16.77 42.53 2.90
80 81 2.355132 CTCTTCCAGAACAGCATGCATC 59.645 50.000 21.98 14.71 42.53 3.91
81 82 2.026542 TCTCTTCCAGAACAGCATGCAT 60.027 45.455 21.98 4.26 42.53 3.96
82 83 1.348696 TCTCTTCCAGAACAGCATGCA 59.651 47.619 21.98 0.00 42.53 3.96
83 84 2.105006 TCTCTTCCAGAACAGCATGC 57.895 50.000 10.51 10.51 42.53 4.06
84 85 6.939132 ATTAATCTCTTCCAGAACAGCATG 57.061 37.500 0.00 0.00 35.62 4.06
85 86 9.638176 AAATATTAATCTCTTCCAGAACAGCAT 57.362 29.630 0.00 0.00 33.62 3.79
86 87 9.466497 AAAATATTAATCTCTTCCAGAACAGCA 57.534 29.630 0.00 0.00 33.62 4.41
87 88 9.727627 CAAAATATTAATCTCTTCCAGAACAGC 57.272 33.333 0.00 0.00 33.62 4.40
88 89 9.727627 GCAAAATATTAATCTCTTCCAGAACAG 57.272 33.333 0.00 0.00 33.62 3.16
89 90 9.241919 TGCAAAATATTAATCTCTTCCAGAACA 57.758 29.630 0.00 0.00 33.62 3.18
95 96 9.521503 GGAGTTTGCAAAATATTAATCTCTTCC 57.478 33.333 14.67 1.65 0.00 3.46
106 107 9.657419 CTTTTTCCATAGGAGTTTGCAAAATAT 57.343 29.630 14.67 7.72 31.21 1.28
107 108 8.865090 TCTTTTTCCATAGGAGTTTGCAAAATA 58.135 29.630 14.67 5.37 31.21 1.40
108 109 7.734942 TCTTTTTCCATAGGAGTTTGCAAAAT 58.265 30.769 14.67 13.64 31.21 1.82
109 110 7.118496 TCTTTTTCCATAGGAGTTTGCAAAA 57.882 32.000 14.67 0.00 31.21 2.44
110 111 6.723298 TCTTTTTCCATAGGAGTTTGCAAA 57.277 33.333 8.05 8.05 31.21 3.68
111 112 6.723298 TTCTTTTTCCATAGGAGTTTGCAA 57.277 33.333 0.00 0.00 31.21 4.08
112 113 6.723298 TTTCTTTTTCCATAGGAGTTTGCA 57.277 33.333 0.00 0.00 31.21 4.08
113 114 7.360353 GCAATTTCTTTTTCCATAGGAGTTTGC 60.360 37.037 0.00 0.00 31.21 3.68
114 115 7.874528 AGCAATTTCTTTTTCCATAGGAGTTTG 59.125 33.333 0.00 0.00 31.21 2.93
115 116 7.874528 CAGCAATTTCTTTTTCCATAGGAGTTT 59.125 33.333 0.00 0.00 31.21 2.66
116 117 7.233348 TCAGCAATTTCTTTTTCCATAGGAGTT 59.767 33.333 0.00 0.00 31.21 3.01
117 118 6.721208 TCAGCAATTTCTTTTTCCATAGGAGT 59.279 34.615 0.00 0.00 31.21 3.85
118 119 7.161773 TCAGCAATTTCTTTTTCCATAGGAG 57.838 36.000 0.00 0.00 31.21 3.69
119 120 7.537596 TTCAGCAATTTCTTTTTCCATAGGA 57.462 32.000 0.00 0.00 0.00 2.94
120 121 7.874528 AGTTTCAGCAATTTCTTTTTCCATAGG 59.125 33.333 0.00 0.00 0.00 2.57
121 122 8.822652 AGTTTCAGCAATTTCTTTTTCCATAG 57.177 30.769 0.00 0.00 0.00 2.23
122 123 9.691362 GTAGTTTCAGCAATTTCTTTTTCCATA 57.309 29.630 0.00 0.00 0.00 2.74
123 124 7.382218 CGTAGTTTCAGCAATTTCTTTTTCCAT 59.618 33.333 0.00 0.00 0.00 3.41
124 125 6.695278 CGTAGTTTCAGCAATTTCTTTTTCCA 59.305 34.615 0.00 0.00 0.00 3.53
125 126 6.915843 TCGTAGTTTCAGCAATTTCTTTTTCC 59.084 34.615 0.00 0.00 0.00 3.13
126 127 7.357613 GCTCGTAGTTTCAGCAATTTCTTTTTC 60.358 37.037 0.00 0.00 33.06 2.29
127 128 6.417930 GCTCGTAGTTTCAGCAATTTCTTTTT 59.582 34.615 0.00 0.00 33.06 1.94
128 129 5.915196 GCTCGTAGTTTCAGCAATTTCTTTT 59.085 36.000 0.00 0.00 33.06 2.27
129 130 5.239525 AGCTCGTAGTTTCAGCAATTTCTTT 59.760 36.000 0.00 0.00 35.46 2.52
130 131 4.757149 AGCTCGTAGTTTCAGCAATTTCTT 59.243 37.500 0.00 0.00 35.46 2.52
131 132 4.319177 AGCTCGTAGTTTCAGCAATTTCT 58.681 39.130 0.00 0.00 35.46 2.52
132 133 4.152402 TGAGCTCGTAGTTTCAGCAATTTC 59.848 41.667 9.64 0.00 35.46 2.17
133 134 4.065088 TGAGCTCGTAGTTTCAGCAATTT 58.935 39.130 9.64 0.00 35.46 1.82
134 135 3.664107 TGAGCTCGTAGTTTCAGCAATT 58.336 40.909 9.64 0.00 35.46 2.32
135 136 3.319137 TGAGCTCGTAGTTTCAGCAAT 57.681 42.857 9.64 0.00 35.46 3.56
136 137 2.812358 TGAGCTCGTAGTTTCAGCAA 57.188 45.000 9.64 0.00 35.46 3.91
137 138 3.319137 AATGAGCTCGTAGTTTCAGCA 57.681 42.857 9.33 0.00 35.46 4.41
138 139 5.779806 TTTAATGAGCTCGTAGTTTCAGC 57.220 39.130 9.33 0.00 0.00 4.26
139 140 7.525688 TCATTTAATGAGCTCGTAGTTTCAG 57.474 36.000 9.33 0.00 33.59 3.02
140 141 7.899178 TTCATTTAATGAGCTCGTAGTTTCA 57.101 32.000 9.33 0.00 40.94 2.69
141 142 9.267096 CTTTTCATTTAATGAGCTCGTAGTTTC 57.733 33.333 9.33 0.00 40.94 2.78
142 143 8.999431 TCTTTTCATTTAATGAGCTCGTAGTTT 58.001 29.630 9.33 0.00 40.94 2.66
143 144 8.547967 TCTTTTCATTTAATGAGCTCGTAGTT 57.452 30.769 9.33 3.91 40.94 2.24
144 145 8.607459 CATCTTTTCATTTAATGAGCTCGTAGT 58.393 33.333 9.33 0.00 40.94 2.73
145 146 8.820933 TCATCTTTTCATTTAATGAGCTCGTAG 58.179 33.333 9.33 0.00 40.94 3.51
146 147 8.716646 TCATCTTTTCATTTAATGAGCTCGTA 57.283 30.769 9.33 0.34 40.94 3.43
147 148 7.201679 CCTCATCTTTTCATTTAATGAGCTCGT 60.202 37.037 9.64 5.78 41.16 4.18
148 149 7.130917 CCTCATCTTTTCATTTAATGAGCTCG 58.869 38.462 9.64 0.00 41.16 5.03
149 150 7.424001 CCCTCATCTTTTCATTTAATGAGCTC 58.576 38.462 6.82 6.82 41.16 4.09
150 151 6.323225 CCCCTCATCTTTTCATTTAATGAGCT 59.677 38.462 7.72 0.00 41.16 4.09
151 152 6.462067 CCCCCTCATCTTTTCATTTAATGAGC 60.462 42.308 7.72 0.00 41.16 4.26
152 153 6.835488 TCCCCCTCATCTTTTCATTTAATGAG 59.165 38.462 7.72 0.00 41.82 2.90
153 154 6.740693 TCCCCCTCATCTTTTCATTTAATGA 58.259 36.000 3.20 3.20 37.55 2.57
154 155 6.835488 TCTCCCCCTCATCTTTTCATTTAATG 59.165 38.462 0.00 0.00 0.00 1.90
155 156 6.985225 TCTCCCCCTCATCTTTTCATTTAAT 58.015 36.000 0.00 0.00 0.00 1.40
156 157 6.401537 TCTCCCCCTCATCTTTTCATTTAA 57.598 37.500 0.00 0.00 0.00 1.52
157 158 6.401537 TTCTCCCCCTCATCTTTTCATTTA 57.598 37.500 0.00 0.00 0.00 1.40
158 159 4.953781 TCTCCCCCTCATCTTTTCATTT 57.046 40.909 0.00 0.00 0.00 2.32
159 160 4.953781 TTCTCCCCCTCATCTTTTCATT 57.046 40.909 0.00 0.00 0.00 2.57
160 161 4.479796 TCATTCTCCCCCTCATCTTTTCAT 59.520 41.667 0.00 0.00 0.00 2.57
161 162 3.851976 TCATTCTCCCCCTCATCTTTTCA 59.148 43.478 0.00 0.00 0.00 2.69
162 163 4.510167 TCATTCTCCCCCTCATCTTTTC 57.490 45.455 0.00 0.00 0.00 2.29
163 164 4.541714 TCTTCATTCTCCCCCTCATCTTTT 59.458 41.667 0.00 0.00 0.00 2.27
164 165 4.114597 TCTTCATTCTCCCCCTCATCTTT 58.885 43.478 0.00 0.00 0.00 2.52
165 166 3.740780 TCTTCATTCTCCCCCTCATCTT 58.259 45.455 0.00 0.00 0.00 2.40
166 167 3.428063 TCTTCATTCTCCCCCTCATCT 57.572 47.619 0.00 0.00 0.00 2.90
167 168 4.720775 ATTCTTCATTCTCCCCCTCATC 57.279 45.455 0.00 0.00 0.00 2.92
168 169 6.596869 TTTATTCTTCATTCTCCCCCTCAT 57.403 37.500 0.00 0.00 0.00 2.90
169 170 6.401537 TTTTATTCTTCATTCTCCCCCTCA 57.598 37.500 0.00 0.00 0.00 3.86
170 171 5.830457 CCTTTTATTCTTCATTCTCCCCCTC 59.170 44.000 0.00 0.00 0.00 4.30
171 172 5.496168 TCCTTTTATTCTTCATTCTCCCCCT 59.504 40.000 0.00 0.00 0.00 4.79
172 173 5.766590 TCCTTTTATTCTTCATTCTCCCCC 58.233 41.667 0.00 0.00 0.00 5.40
173 174 6.663734 TCTCCTTTTATTCTTCATTCTCCCC 58.336 40.000 0.00 0.00 0.00 4.81
174 175 8.581253 TTTCTCCTTTTATTCTTCATTCTCCC 57.419 34.615 0.00 0.00 0.00 4.30
179 180 9.987272 CCACTTTTTCTCCTTTTATTCTTCATT 57.013 29.630 0.00 0.00 0.00 2.57
180 181 9.367160 TCCACTTTTTCTCCTTTTATTCTTCAT 57.633 29.630 0.00 0.00 0.00 2.57
181 182 8.760980 TCCACTTTTTCTCCTTTTATTCTTCA 57.239 30.769 0.00 0.00 0.00 3.02
183 184 9.987272 CAATCCACTTTTTCTCCTTTTATTCTT 57.013 29.630 0.00 0.00 0.00 2.52
184 185 9.367160 TCAATCCACTTTTTCTCCTTTTATTCT 57.633 29.630 0.00 0.00 0.00 2.40
187 188 9.312904 TGATCAATCCACTTTTTCTCCTTTTAT 57.687 29.630 0.00 0.00 0.00 1.40
188 189 8.576442 GTGATCAATCCACTTTTTCTCCTTTTA 58.424 33.333 0.00 0.00 0.00 1.52
189 190 7.436933 GTGATCAATCCACTTTTTCTCCTTTT 58.563 34.615 0.00 0.00 0.00 2.27
190 191 6.015095 GGTGATCAATCCACTTTTTCTCCTTT 60.015 38.462 0.00 0.00 35.05 3.11
191 192 5.478332 GGTGATCAATCCACTTTTTCTCCTT 59.522 40.000 0.00 0.00 35.05 3.36
192 193 5.012893 GGTGATCAATCCACTTTTTCTCCT 58.987 41.667 0.00 0.00 35.05 3.69
193 194 4.158579 GGGTGATCAATCCACTTTTTCTCC 59.841 45.833 0.00 0.00 35.05 3.71
194 195 4.142600 CGGGTGATCAATCCACTTTTTCTC 60.143 45.833 14.45 0.00 35.05 2.87
195 196 3.758554 CGGGTGATCAATCCACTTTTTCT 59.241 43.478 14.45 0.00 35.05 2.52
196 197 3.506067 ACGGGTGATCAATCCACTTTTTC 59.494 43.478 14.45 0.00 35.05 2.29
197 198 3.255642 CACGGGTGATCAATCCACTTTTT 59.744 43.478 14.45 0.00 35.05 1.94
198 199 2.819608 CACGGGTGATCAATCCACTTTT 59.180 45.455 14.45 0.00 35.05 2.27
199 200 2.436417 CACGGGTGATCAATCCACTTT 58.564 47.619 14.45 0.00 35.05 2.66
200 201 1.950484 GCACGGGTGATCAATCCACTT 60.950 52.381 14.45 0.00 35.05 3.16
201 202 0.392998 GCACGGGTGATCAATCCACT 60.393 55.000 14.45 0.00 35.05 4.00
202 203 1.705337 CGCACGGGTGATCAATCCAC 61.705 60.000 14.45 0.00 0.00 4.02
203 204 1.449423 CGCACGGGTGATCAATCCA 60.449 57.895 14.45 0.00 0.00 3.41
204 205 2.823829 GCGCACGGGTGATCAATCC 61.824 63.158 0.18 1.21 0.00 3.01
205 206 1.439353 ATGCGCACGGGTGATCAATC 61.439 55.000 14.90 0.00 0.00 2.67
206 207 0.179059 TATGCGCACGGGTGATCAAT 60.179 50.000 14.90 0.00 0.00 2.57
207 208 0.179059 ATATGCGCACGGGTGATCAA 60.179 50.000 14.90 0.00 0.00 2.57
208 209 0.179059 AATATGCGCACGGGTGATCA 60.179 50.000 14.90 0.00 0.00 2.92
209 210 0.512952 GAATATGCGCACGGGTGATC 59.487 55.000 14.90 0.35 0.00 2.92
210 211 0.106708 AGAATATGCGCACGGGTGAT 59.893 50.000 14.90 0.00 0.00 3.06
211 212 0.747852 TAGAATATGCGCACGGGTGA 59.252 50.000 14.90 0.00 0.00 4.02
212 213 1.526887 CTTAGAATATGCGCACGGGTG 59.473 52.381 14.90 0.00 0.00 4.61
213 214 1.411246 TCTTAGAATATGCGCACGGGT 59.589 47.619 14.90 0.00 0.00 5.28
214 215 2.148916 TCTTAGAATATGCGCACGGG 57.851 50.000 14.90 0.00 0.00 5.28
215 216 3.381045 TCTTCTTAGAATATGCGCACGG 58.619 45.455 14.90 0.00 0.00 4.94
216 217 5.582439 ATTCTTCTTAGAATATGCGCACG 57.418 39.130 14.90 0.00 46.72 5.34
261 262 9.936759 CCTTGGGTAAGCATAAAGAAAAATTAA 57.063 29.630 0.00 0.00 32.40 1.40
262 263 9.315363 TCCTTGGGTAAGCATAAAGAAAAATTA 57.685 29.630 0.00 0.00 32.40 1.40
263 264 8.201242 TCCTTGGGTAAGCATAAAGAAAAATT 57.799 30.769 0.00 0.00 32.40 1.82
264 265 7.790782 TCCTTGGGTAAGCATAAAGAAAAAT 57.209 32.000 0.00 0.00 32.40 1.82
265 266 7.453126 TCATCCTTGGGTAAGCATAAAGAAAAA 59.547 33.333 0.00 0.00 32.40 1.94
266 267 6.951198 TCATCCTTGGGTAAGCATAAAGAAAA 59.049 34.615 0.00 0.00 32.40 2.29
267 268 6.489603 TCATCCTTGGGTAAGCATAAAGAAA 58.510 36.000 0.00 0.00 32.40 2.52
268 269 6.073447 TCATCCTTGGGTAAGCATAAAGAA 57.927 37.500 0.00 0.00 32.40 2.52
269 270 5.708736 TCATCCTTGGGTAAGCATAAAGA 57.291 39.130 0.00 0.00 32.40 2.52
270 271 6.736794 GCATTCATCCTTGGGTAAGCATAAAG 60.737 42.308 0.00 0.00 32.40 1.85
271 272 5.068987 GCATTCATCCTTGGGTAAGCATAAA 59.931 40.000 0.00 0.00 32.40 1.40
272 273 4.584325 GCATTCATCCTTGGGTAAGCATAA 59.416 41.667 0.00 0.00 32.40 1.90
273 274 4.141181 AGCATTCATCCTTGGGTAAGCATA 60.141 41.667 0.00 0.00 32.40 3.14
274 275 2.961062 GCATTCATCCTTGGGTAAGCAT 59.039 45.455 0.00 0.00 32.40 3.79
275 276 2.025037 AGCATTCATCCTTGGGTAAGCA 60.025 45.455 0.00 0.00 32.40 3.91
276 277 2.659428 AGCATTCATCCTTGGGTAAGC 58.341 47.619 0.00 0.00 32.40 3.09
277 278 4.706476 TCAAAGCATTCATCCTTGGGTAAG 59.294 41.667 0.00 0.00 0.00 2.34
278 279 4.671831 TCAAAGCATTCATCCTTGGGTAA 58.328 39.130 0.00 0.00 0.00 2.85
279 280 4.314522 TCAAAGCATTCATCCTTGGGTA 57.685 40.909 0.00 0.00 0.00 3.69
280 281 3.173953 TCAAAGCATTCATCCTTGGGT 57.826 42.857 0.00 0.00 0.00 4.51
281 282 3.069158 GGATCAAAGCATTCATCCTTGGG 59.931 47.826 0.00 0.00 35.55 4.12
282 283 3.069158 GGGATCAAAGCATTCATCCTTGG 59.931 47.826 4.54 0.00 37.52 3.61
283 284 3.958798 AGGGATCAAAGCATTCATCCTTG 59.041 43.478 4.54 0.00 37.52 3.61
284 285 4.261411 AGGGATCAAAGCATTCATCCTT 57.739 40.909 4.54 0.00 37.52 3.36
285 286 3.958798 CAAGGGATCAAAGCATTCATCCT 59.041 43.478 4.54 0.00 37.52 3.24
286 287 3.956199 TCAAGGGATCAAAGCATTCATCC 59.044 43.478 0.00 0.00 36.95 3.51
287 288 5.587388 TTCAAGGGATCAAAGCATTCATC 57.413 39.130 0.00 0.00 0.00 2.92
288 289 6.555463 AATTCAAGGGATCAAAGCATTCAT 57.445 33.333 0.00 0.00 0.00 2.57
289 290 5.393352 CGAATTCAAGGGATCAAAGCATTCA 60.393 40.000 6.22 0.00 0.00 2.57
290 291 5.039333 CGAATTCAAGGGATCAAAGCATTC 58.961 41.667 6.22 0.00 0.00 2.67
291 292 4.463891 ACGAATTCAAGGGATCAAAGCATT 59.536 37.500 6.22 0.00 0.00 3.56
292 293 4.019174 ACGAATTCAAGGGATCAAAGCAT 58.981 39.130 6.22 0.00 0.00 3.79
293 294 3.420893 ACGAATTCAAGGGATCAAAGCA 58.579 40.909 6.22 0.00 0.00 3.91
294 295 4.440839 AACGAATTCAAGGGATCAAAGC 57.559 40.909 6.22 0.00 0.00 3.51
295 296 6.012658 TCAAACGAATTCAAGGGATCAAAG 57.987 37.500 6.22 0.00 0.00 2.77
296 297 6.398234 TTCAAACGAATTCAAGGGATCAAA 57.602 33.333 6.22 0.00 0.00 2.69
297 298 6.398234 TTTCAAACGAATTCAAGGGATCAA 57.602 33.333 6.22 0.00 0.00 2.57
298 299 6.588719 ATTTCAAACGAATTCAAGGGATCA 57.411 33.333 6.22 0.00 0.00 2.92
299 300 8.624776 AGATATTTCAAACGAATTCAAGGGATC 58.375 33.333 6.22 0.00 0.00 3.36
300 301 8.525290 AGATATTTCAAACGAATTCAAGGGAT 57.475 30.769 6.22 0.00 0.00 3.85
301 302 7.938140 AGATATTTCAAACGAATTCAAGGGA 57.062 32.000 6.22 0.00 0.00 4.20
302 303 8.986477 AAAGATATTTCAAACGAATTCAAGGG 57.014 30.769 6.22 0.00 0.00 3.95
326 327 5.406649 AGCAAACGTCAAGTTCATCAAAAA 58.593 33.333 0.00 0.00 43.37 1.94
327 328 4.992688 AGCAAACGTCAAGTTCATCAAAA 58.007 34.783 0.00 0.00 43.37 2.44
328 329 4.630894 AGCAAACGTCAAGTTCATCAAA 57.369 36.364 0.00 0.00 43.37 2.69
329 330 5.238432 ACATAGCAAACGTCAAGTTCATCAA 59.762 36.000 0.00 0.00 43.37 2.57
330 331 4.754618 ACATAGCAAACGTCAAGTTCATCA 59.245 37.500 0.00 0.00 43.37 3.07
331 332 5.283060 ACATAGCAAACGTCAAGTTCATC 57.717 39.130 0.00 0.00 43.37 2.92
332 333 5.689383 AACATAGCAAACGTCAAGTTCAT 57.311 34.783 0.00 0.00 43.37 2.57
333 334 5.493133 AAACATAGCAAACGTCAAGTTCA 57.507 34.783 0.00 0.00 43.37 3.18
334 335 7.075741 ACATAAACATAGCAAACGTCAAGTTC 58.924 34.615 0.00 0.00 43.37 3.01
335 336 6.966021 ACATAAACATAGCAAACGTCAAGTT 58.034 32.000 0.00 0.00 46.76 2.66
336 337 6.203915 TGACATAAACATAGCAAACGTCAAGT 59.796 34.615 0.00 0.00 0.00 3.16
337 338 6.598525 TGACATAAACATAGCAAACGTCAAG 58.401 36.000 0.00 0.00 0.00 3.02
338 339 6.546972 TGACATAAACATAGCAAACGTCAA 57.453 33.333 0.00 0.00 0.00 3.18
339 340 6.370166 TCATGACATAAACATAGCAAACGTCA 59.630 34.615 0.00 0.00 35.54 4.35
340 341 6.682863 GTCATGACATAAACATAGCAAACGTC 59.317 38.462 21.07 0.00 0.00 4.34
341 342 6.542852 GTCATGACATAAACATAGCAAACGT 58.457 36.000 21.07 0.00 0.00 3.99
342 343 5.672426 CGTCATGACATAAACATAGCAAACG 59.328 40.000 24.93 2.11 0.00 3.60
343 344 6.771076 TCGTCATGACATAAACATAGCAAAC 58.229 36.000 24.93 0.00 0.00 2.93
344 345 6.976636 TCGTCATGACATAAACATAGCAAA 57.023 33.333 24.93 0.00 0.00 3.68
345 346 8.711457 CATATCGTCATGACATAAACATAGCAA 58.289 33.333 24.93 0.87 0.00 3.91
346 347 8.087750 TCATATCGTCATGACATAAACATAGCA 58.912 33.333 24.93 1.48 29.93 3.49
347 348 8.466086 TCATATCGTCATGACATAAACATAGC 57.534 34.615 24.93 0.00 29.93 2.97
350 351 9.492973 TCATTCATATCGTCATGACATAAACAT 57.507 29.630 24.93 9.07 34.69 2.71
351 352 8.885494 TCATTCATATCGTCATGACATAAACA 57.115 30.769 24.93 9.99 34.69 2.83
352 353 9.750882 CATCATTCATATCGTCATGACATAAAC 57.249 33.333 24.93 0.00 34.69 2.01
353 354 8.445493 GCATCATTCATATCGTCATGACATAAA 58.555 33.333 24.93 13.18 34.69 1.40
354 355 7.820872 AGCATCATTCATATCGTCATGACATAA 59.179 33.333 24.93 10.49 34.69 1.90
355 356 7.325694 AGCATCATTCATATCGTCATGACATA 58.674 34.615 24.93 19.52 34.69 2.29
356 357 6.171213 AGCATCATTCATATCGTCATGACAT 58.829 36.000 24.93 18.18 34.69 3.06
357 358 5.544650 AGCATCATTCATATCGTCATGACA 58.455 37.500 24.93 12.75 34.69 3.58
358 359 6.477669 AAGCATCATTCATATCGTCATGAC 57.522 37.500 16.21 16.21 34.69 3.06
359 360 8.036575 TCATAAGCATCATTCATATCGTCATGA 58.963 33.333 0.00 0.00 33.10 3.07
360 361 8.193250 TCATAAGCATCATTCATATCGTCATG 57.807 34.615 0.00 0.00 0.00 3.07
361 362 8.782339 TTCATAAGCATCATTCATATCGTCAT 57.218 30.769 0.00 0.00 0.00 3.06
362 363 8.090214 TCTTCATAAGCATCATTCATATCGTCA 58.910 33.333 0.00 0.00 0.00 4.35
363 364 8.471361 TCTTCATAAGCATCATTCATATCGTC 57.529 34.615 0.00 0.00 0.00 4.20
388 389 9.546428 GCCCATTAGATTTTGTAGCAAATTTAT 57.454 29.630 0.00 0.00 0.00 1.40
389 390 8.757877 AGCCCATTAGATTTTGTAGCAAATTTA 58.242 29.630 0.00 0.00 0.00 1.40
390 391 7.550196 CAGCCCATTAGATTTTGTAGCAAATTT 59.450 33.333 0.00 0.00 0.00 1.82
391 392 7.043565 CAGCCCATTAGATTTTGTAGCAAATT 58.956 34.615 0.00 0.00 0.00 1.82
392 393 6.407299 CCAGCCCATTAGATTTTGTAGCAAAT 60.407 38.462 0.00 0.00 0.00 2.32
393 394 5.105392 CCAGCCCATTAGATTTTGTAGCAAA 60.105 40.000 0.00 0.00 0.00 3.68
394 395 4.402155 CCAGCCCATTAGATTTTGTAGCAA 59.598 41.667 0.00 0.00 0.00 3.91
395 396 3.953612 CCAGCCCATTAGATTTTGTAGCA 59.046 43.478 0.00 0.00 0.00 3.49
396 397 3.954258 ACCAGCCCATTAGATTTTGTAGC 59.046 43.478 0.00 0.00 0.00 3.58
397 398 6.152661 TGAAACCAGCCCATTAGATTTTGTAG 59.847 38.462 0.00 0.00 0.00 2.74
398 399 6.013379 TGAAACCAGCCCATTAGATTTTGTA 58.987 36.000 0.00 0.00 0.00 2.41
399 400 4.837860 TGAAACCAGCCCATTAGATTTTGT 59.162 37.500 0.00 0.00 0.00 2.83
400 401 5.404466 TGAAACCAGCCCATTAGATTTTG 57.596 39.130 0.00 0.00 0.00 2.44
401 402 5.721000 TGATGAAACCAGCCCATTAGATTTT 59.279 36.000 0.00 0.00 0.00 1.82
402 403 5.271598 TGATGAAACCAGCCCATTAGATTT 58.728 37.500 0.00 0.00 0.00 2.17
403 404 4.870636 TGATGAAACCAGCCCATTAGATT 58.129 39.130 0.00 0.00 0.00 2.40
404 405 4.524802 TGATGAAACCAGCCCATTAGAT 57.475 40.909 0.00 0.00 0.00 1.98
405 406 4.524802 ATGATGAAACCAGCCCATTAGA 57.475 40.909 0.00 0.00 0.00 2.10
406 407 6.547141 TCTTTATGATGAAACCAGCCCATTAG 59.453 38.462 0.00 0.00 0.00 1.73
407 408 6.430864 TCTTTATGATGAAACCAGCCCATTA 58.569 36.000 0.00 0.00 0.00 1.90
408 409 5.271598 TCTTTATGATGAAACCAGCCCATT 58.728 37.500 0.00 0.00 0.00 3.16
409 410 4.870636 TCTTTATGATGAAACCAGCCCAT 58.129 39.130 0.00 0.00 0.00 4.00
410 411 4.314522 TCTTTATGATGAAACCAGCCCA 57.685 40.909 0.00 0.00 0.00 5.36
411 412 4.142160 GGTTCTTTATGATGAAACCAGCCC 60.142 45.833 0.00 0.00 0.00 5.19
412 413 4.706962 AGGTTCTTTATGATGAAACCAGCC 59.293 41.667 5.47 0.00 30.78 4.85
413 414 5.644644 CAGGTTCTTTATGATGAAACCAGC 58.355 41.667 5.47 0.00 30.78 4.85
414 415 5.393461 GGCAGGTTCTTTATGATGAAACCAG 60.393 44.000 5.47 0.00 30.78 4.00
415 416 4.462483 GGCAGGTTCTTTATGATGAAACCA 59.538 41.667 5.47 0.00 30.78 3.67
416 417 4.462483 TGGCAGGTTCTTTATGATGAAACC 59.538 41.667 0.00 0.00 30.78 3.27
417 418 5.643379 TGGCAGGTTCTTTATGATGAAAC 57.357 39.130 0.00 0.00 0.00 2.78
418 419 6.855763 AATGGCAGGTTCTTTATGATGAAA 57.144 33.333 0.00 0.00 0.00 2.69
419 420 6.436847 TGAAATGGCAGGTTCTTTATGATGAA 59.563 34.615 13.10 0.00 0.00 2.57
420 421 5.951148 TGAAATGGCAGGTTCTTTATGATGA 59.049 36.000 13.10 0.00 0.00 2.92
421 422 6.095860 TCTGAAATGGCAGGTTCTTTATGATG 59.904 38.462 13.10 0.00 36.55 3.07
422 423 6.189859 TCTGAAATGGCAGGTTCTTTATGAT 58.810 36.000 13.10 0.00 36.55 2.45
423 424 5.569355 TCTGAAATGGCAGGTTCTTTATGA 58.431 37.500 13.10 0.10 36.55 2.15
424 425 5.902613 TCTGAAATGGCAGGTTCTTTATG 57.097 39.130 13.10 0.00 36.55 1.90
425 426 6.127253 CCAATCTGAAATGGCAGGTTCTTTAT 60.127 38.462 13.10 3.89 37.12 1.40
426 427 5.185635 CCAATCTGAAATGGCAGGTTCTTTA 59.814 40.000 13.10 2.13 37.12 1.85
427 428 4.020839 CCAATCTGAAATGGCAGGTTCTTT 60.021 41.667 13.10 0.00 37.12 2.52
428 429 3.512724 CCAATCTGAAATGGCAGGTTCTT 59.487 43.478 13.10 0.00 37.12 2.52
429 430 3.094572 CCAATCTGAAATGGCAGGTTCT 58.905 45.455 13.10 0.00 37.12 3.01
430 431 3.515330 CCAATCTGAAATGGCAGGTTC 57.485 47.619 6.73 6.73 37.12 3.62
437 438 3.310774 CACGACTAGCCAATCTGAAATGG 59.689 47.826 8.14 8.14 39.80 3.16
438 439 4.183865 TCACGACTAGCCAATCTGAAATG 58.816 43.478 0.00 0.00 0.00 2.32
439 440 4.471904 TCACGACTAGCCAATCTGAAAT 57.528 40.909 0.00 0.00 0.00 2.17
440 441 3.953712 TCACGACTAGCCAATCTGAAA 57.046 42.857 0.00 0.00 0.00 2.69
441 442 4.887655 TCTATCACGACTAGCCAATCTGAA 59.112 41.667 0.00 0.00 0.00 3.02
442 443 4.461198 TCTATCACGACTAGCCAATCTGA 58.539 43.478 0.00 0.00 0.00 3.27
443 444 4.517075 TCTCTATCACGACTAGCCAATCTG 59.483 45.833 0.00 0.00 0.00 2.90
444 445 4.720046 TCTCTATCACGACTAGCCAATCT 58.280 43.478 0.00 0.00 0.00 2.40
445 446 5.637006 ATCTCTATCACGACTAGCCAATC 57.363 43.478 0.00 0.00 0.00 2.67
446 447 6.412362 AAATCTCTATCACGACTAGCCAAT 57.588 37.500 0.00 0.00 0.00 3.16
447 448 5.854010 AAATCTCTATCACGACTAGCCAA 57.146 39.130 0.00 0.00 0.00 4.52
448 449 5.854010 AAAATCTCTATCACGACTAGCCA 57.146 39.130 0.00 0.00 0.00 4.75
468 469 3.275999 GCAACGGAGGGCTATAGAAAAA 58.724 45.455 3.21 0.00 0.00 1.94
469 470 2.420967 GGCAACGGAGGGCTATAGAAAA 60.421 50.000 3.21 0.00 32.57 2.29
470 471 1.140252 GGCAACGGAGGGCTATAGAAA 59.860 52.381 3.21 0.00 32.57 2.52
471 472 0.756903 GGCAACGGAGGGCTATAGAA 59.243 55.000 3.21 0.00 32.57 2.10
472 473 0.397957 TGGCAACGGAGGGCTATAGA 60.398 55.000 3.21 0.00 42.51 1.98
473 474 0.468226 TTGGCAACGGAGGGCTATAG 59.532 55.000 0.00 0.00 42.51 1.31
474 475 0.913205 TTTGGCAACGGAGGGCTATA 59.087 50.000 0.00 0.00 42.51 1.31
475 476 0.679960 GTTTGGCAACGGAGGGCTAT 60.680 55.000 0.00 0.00 42.51 2.97
476 477 1.302993 GTTTGGCAACGGAGGGCTA 60.303 57.895 0.00 0.00 42.51 3.93
477 478 2.597510 GTTTGGCAACGGAGGGCT 60.598 61.111 0.00 0.00 42.51 5.19
478 479 1.815817 ATTGTTTGGCAACGGAGGGC 61.816 55.000 0.00 0.00 40.28 5.19
479 480 1.540267 TATTGTTTGGCAACGGAGGG 58.460 50.000 0.00 0.00 40.28 4.30
480 481 3.866883 AATATTGTTTGGCAACGGAGG 57.133 42.857 0.00 0.00 40.28 4.30
481 482 6.616947 TCTTTAATATTGTTTGGCAACGGAG 58.383 36.000 0.00 0.00 40.28 4.63
482 483 6.349777 CCTCTTTAATATTGTTTGGCAACGGA 60.350 38.462 0.00 0.00 40.28 4.69
483 484 5.804979 CCTCTTTAATATTGTTTGGCAACGG 59.195 40.000 0.00 0.00 40.28 4.44
484 485 6.386654 ACCTCTTTAATATTGTTTGGCAACG 58.613 36.000 0.00 0.00 40.28 4.10
485 486 8.520351 AGTACCTCTTTAATATTGTTTGGCAAC 58.480 33.333 0.00 0.00 40.28 4.17
486 487 8.644374 AGTACCTCTTTAATATTGTTTGGCAA 57.356 30.769 0.00 0.00 41.89 4.52
487 488 7.338449 GGAGTACCTCTTTAATATTGTTTGGCA 59.662 37.037 0.00 0.00 0.00 4.92
488 489 7.201794 GGGAGTACCTCTTTAATATTGTTTGGC 60.202 40.741 0.00 0.00 35.85 4.52
489 490 8.221965 GGGAGTACCTCTTTAATATTGTTTGG 57.778 38.462 0.00 0.00 35.85 3.28
527 528 9.638176 ACCGTCTAAGGTCTAAAAGATCTTATA 57.362 33.333 8.75 1.61 43.47 0.98
528 529 8.414778 CACCGTCTAAGGTCTAAAAGATCTTAT 58.585 37.037 8.75 0.00 43.47 1.73
529 530 7.613022 TCACCGTCTAAGGTCTAAAAGATCTTA 59.387 37.037 8.75 8.86 43.47 2.10
530 531 6.436532 TCACCGTCTAAGGTCTAAAAGATCTT 59.563 38.462 0.88 0.88 46.64 2.40
531 532 5.950549 TCACCGTCTAAGGTCTAAAAGATCT 59.049 40.000 0.00 0.00 43.89 2.75
532 533 6.035217 GTCACCGTCTAAGGTCTAAAAGATC 58.965 44.000 0.00 0.00 43.89 2.75
533 534 5.392811 CGTCACCGTCTAAGGTCTAAAAGAT 60.393 44.000 0.00 0.00 43.89 2.40
534 535 4.083110 CGTCACCGTCTAAGGTCTAAAAGA 60.083 45.833 0.00 0.00 43.89 2.52
535 536 4.083110 TCGTCACCGTCTAAGGTCTAAAAG 60.083 45.833 0.00 0.00 43.89 2.27
536 537 3.820467 TCGTCACCGTCTAAGGTCTAAAA 59.180 43.478 0.00 0.00 43.89 1.52
537 538 3.411446 TCGTCACCGTCTAAGGTCTAAA 58.589 45.455 0.00 0.00 43.89 1.85
538 539 3.057969 TCGTCACCGTCTAAGGTCTAA 57.942 47.619 0.00 0.00 43.89 2.10
539 540 2.768253 TCGTCACCGTCTAAGGTCTA 57.232 50.000 0.00 0.00 43.89 2.59
540 541 2.125773 ATCGTCACCGTCTAAGGTCT 57.874 50.000 0.00 0.00 43.89 3.85
541 542 4.564940 ATTATCGTCACCGTCTAAGGTC 57.435 45.455 0.00 0.00 43.89 3.85
542 543 4.497006 CGAATTATCGTCACCGTCTAAGGT 60.497 45.833 0.00 0.00 43.99 3.50
543 544 3.973135 CGAATTATCGTCACCGTCTAAGG 59.027 47.826 0.00 0.00 44.06 2.69
567 568 1.517694 GGAGCGCCGAAACACGATA 60.518 57.895 2.29 0.00 45.77 2.92
657 658 3.499737 CTTGGCATCGACCGCACC 61.500 66.667 10.53 0.00 0.00 5.01
658 659 4.166011 GCTTGGCATCGACCGCAC 62.166 66.667 10.53 1.60 0.00 5.34
722 723 2.029073 ACGAGGTGCCACGAACTG 59.971 61.111 14.45 0.00 34.34 3.16
723 724 2.029073 CACGAGGTGCCACGAACT 59.971 61.111 14.45 0.00 34.34 3.01
779 780 1.404583 GGATGGATTGGCTGTTGTTGC 60.405 52.381 0.00 0.00 0.00 4.17
863 864 2.662070 GGGTACGGTAAGGGCAGCA 61.662 63.158 0.00 0.00 0.00 4.41
864 865 2.188731 GGGTACGGTAAGGGCAGC 59.811 66.667 0.00 0.00 0.00 5.25
865 866 2.905681 GGGGTACGGTAAGGGCAG 59.094 66.667 0.00 0.00 0.00 4.85
866 867 3.076278 CGGGGTACGGTAAGGGCA 61.076 66.667 0.00 0.00 39.42 5.36
1180 1181 2.835895 GCGAGAGGAGAGGGGGTC 60.836 72.222 0.00 0.00 0.00 4.46
1216 1217 6.183360 GGCAAAATTGTTCCAAATAACTAGCG 60.183 38.462 0.00 0.00 0.00 4.26
1277 1278 1.548128 CCCCCTCGATCCTAGTACCAG 60.548 61.905 0.00 0.00 0.00 4.00
1340 1342 1.134694 GGAAATCGTTGAGGCGCAC 59.865 57.895 10.83 2.81 0.00 5.34
1343 1345 1.999051 CGAGGAAATCGTTGAGGCG 59.001 57.895 0.00 0.00 46.62 5.52
1548 1550 8.034804 GTGACACCCAAATTCATTAGCTTATTT 58.965 33.333 0.00 0.00 0.00 1.40
1806 2309 3.882888 CCTGAACTGTGCAACTCCTTTTA 59.117 43.478 0.00 0.00 38.04 1.52
1807 2310 2.689983 CCTGAACTGTGCAACTCCTTTT 59.310 45.455 0.00 0.00 38.04 2.27
1811 2314 1.518903 GCCCTGAACTGTGCAACTCC 61.519 60.000 0.00 0.00 38.04 3.85
2015 2526 2.609459 GGATGACAGCTGTGGTAATTCG 59.391 50.000 27.27 0.00 0.00 3.34
2164 2676 7.431084 CGTGTGTTGCTATTGAAGTTACTTTTT 59.569 33.333 0.00 0.00 0.00 1.94
2215 2727 5.505654 GCCCTGTAATGATAAAATGGTGACG 60.506 44.000 0.00 0.00 0.00 4.35
2344 2856 1.059584 TCTCCACTTGTGGCCTGGAA 61.060 55.000 14.49 1.53 33.58 3.53
2569 3110 2.683465 GCAGGATCCAGGCAAGGGA 61.683 63.158 20.05 0.00 39.14 4.20
2582 3123 4.838152 GATCCCGCTTGCGCAGGA 62.838 66.667 25.12 20.87 46.25 3.86
2811 3358 9.639601 CATGAGTTTTACTACTGTGTATCTGAA 57.360 33.333 0.00 0.00 0.00 3.02
3037 3707 3.937079 CCAATAACGGGACAAAGTAGGAC 59.063 47.826 0.00 0.00 0.00 3.85
3193 3863 1.754803 TGCTAGGGGTTGTCAGTATCG 59.245 52.381 0.00 0.00 0.00 2.92
3246 3916 6.349115 CCAAACAAAATCCATCAGTCAGAGAG 60.349 42.308 0.00 0.00 0.00 3.20
3294 3964 6.780457 ATCCCGAAATCAAGAATGAACAAT 57.220 33.333 0.00 0.00 39.49 2.71
3295 3965 6.588719 AATCCCGAAATCAAGAATGAACAA 57.411 33.333 0.00 0.00 39.49 2.83
3296 3966 6.588719 AAATCCCGAAATCAAGAATGAACA 57.411 33.333 0.00 0.00 39.49 3.18
3307 3977 6.539103 AGTTGCTCTACTTAAATCCCGAAATC 59.461 38.462 0.00 0.00 0.00 2.17
3414 4084 7.215696 TCGTCAAATTTGCAAGTAAAAAGTG 57.784 32.000 13.54 0.00 0.00 3.16
3423 4093 2.950433 AGCCATCGTCAAATTTGCAAG 58.050 42.857 13.54 7.10 0.00 4.01
3430 4100 1.741706 CAGCAGAAGCCATCGTCAAAT 59.258 47.619 0.00 0.00 43.56 2.32
3450 4120 3.451141 TTCCAACAAAACAGCATCACC 57.549 42.857 0.00 0.00 0.00 4.02
3501 4171 9.010029 CACAACAACAGTAAGGGATATTAAACT 57.990 33.333 0.00 0.00 0.00 2.66
3822 4505 6.958767 AGACAAACTAAATACTGCAGGGTAT 58.041 36.000 19.93 5.69 34.29 2.73
4187 4871 2.901839 GTCCCTTGGTAGTTCAGTGGTA 59.098 50.000 0.00 0.00 0.00 3.25
4365 5049 5.957842 TGCCAGTCTAAAAAGGTTATGTG 57.042 39.130 0.00 0.00 0.00 3.21
4580 5265 6.889177 TCATTATCCAATTGCAACACCTCTAA 59.111 34.615 0.00 0.00 0.00 2.10
4730 5415 9.429600 GAATGTAATGTAAAACGTGCCTATTAC 57.570 33.333 12.32 12.32 32.82 1.89
4869 5554 1.667830 TCTTGGACGCTTTGCCGAG 60.668 57.895 0.00 0.00 37.08 4.63
4917 5602 7.094631 ACAATGCAGTAATTTGTACGAGTCTA 58.905 34.615 0.82 0.00 32.09 2.59
4923 5608 5.790003 CAGTGACAATGCAGTAATTTGTACG 59.210 40.000 2.72 0.00 33.92 3.67
4935 5620 3.407424 AGCTAGAACAGTGACAATGCA 57.593 42.857 2.13 0.00 0.00 3.96
5020 5705 9.783256 AAAACTATTATCACGATAAGCAAAACC 57.217 29.630 5.76 0.00 36.79 3.27
5073 5758 1.207488 TCAGGGTGCACCAATAGGCT 61.207 55.000 35.78 20.15 43.89 4.58
5088 5773 2.868044 GCACGTAATATGGCTCCTCAGG 60.868 54.545 0.00 0.00 0.00 3.86
5182 5867 1.334869 GCACTCACAAACCACAAGGAG 59.665 52.381 0.00 0.00 38.69 3.69
5259 5945 8.768501 AACCTTTGTAGGAGAAAAAGAGAATT 57.231 30.769 0.00 0.00 45.05 2.17
5262 5948 7.568199 CAAACCTTTGTAGGAGAAAAAGAGA 57.432 36.000 0.00 0.00 45.05 3.10
5328 6015 7.963981 TCTGTTCGCTTTATTCAGTAGAAATG 58.036 34.615 0.00 0.00 37.29 2.32
5334 6021 9.817809 AATAATCTCTGTTCGCTTTATTCAGTA 57.182 29.630 0.00 0.00 0.00 2.74
5346 6033 7.493971 AGGTTGAGAATGAATAATCTCTGTTCG 59.506 37.037 4.62 0.00 42.07 3.95
5406 6093 3.064271 TGTTTGTTGCTTAGGACGAACAC 59.936 43.478 5.45 0.00 42.34 3.32
5429 6116 1.115930 AGACACCAGGACTTGTCGCT 61.116 55.000 0.00 0.00 45.71 4.93
5449 6136 2.959030 AGACTTGTGGGCTTTCCTTTTC 59.041 45.455 0.00 0.00 36.20 2.29
5509 6196 1.148310 CCGACAAAGCTGACACGATT 58.852 50.000 0.00 0.00 0.00 3.34
5510 6197 0.033504 ACCGACAAAGCTGACACGAT 59.966 50.000 0.00 0.00 0.00 3.73
5528 6215 6.563422 TGACATGGCTTTCTATAATTGCAAC 58.437 36.000 0.00 0.00 0.00 4.17
5769 6462 5.523916 TGCTTGTTAGAAACTGTGACTCTTC 59.476 40.000 0.00 0.00 0.00 2.87
5822 6515 6.358974 TTTCAGGAGATGTGTAGATGTGAA 57.641 37.500 0.00 0.00 0.00 3.18
5846 6539 2.040412 GGATGGACCAACCTGAAGTTCT 59.960 50.000 13.46 0.00 36.18 3.01
5847 6540 2.437413 GGATGGACCAACCTGAAGTTC 58.563 52.381 13.46 0.00 36.18 3.01
6005 6701 1.146930 TCCGAGCATCTTGGATGCC 59.853 57.895 23.37 15.79 45.59 4.40
6023 6719 1.278699 ACCATGAAAATTTGCCCGCAT 59.721 42.857 0.00 0.00 0.00 4.73
6051 6747 3.815856 TTTGCTAGAGCTCCTCAGATG 57.184 47.619 10.93 0.00 42.66 2.90
6055 6751 3.769739 TTGTTTTGCTAGAGCTCCTCA 57.230 42.857 10.93 2.89 42.66 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.