Multiple sequence alignment - TraesCS6A01G270400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G270400 chr6A 100.000 3569 0 0 1 3569 496576510 496580078 0.000000e+00 6591.0
1 TraesCS6A01G270400 chr6A 86.935 620 45 24 2967 3569 32184611 32185211 0.000000e+00 664.0
2 TraesCS6A01G270400 chr6D 92.748 1903 73 21 890 2758 346834567 346832696 0.000000e+00 2689.0
3 TraesCS6A01G270400 chr6D 84.556 913 94 20 1 892 346835580 346834694 0.000000e+00 861.0
4 TraesCS6A01G270400 chr6B 94.734 1690 78 7 1090 2776 534235333 534237014 0.000000e+00 2617.0
5 TraesCS6A01G270400 chr6B 86.226 726 75 10 1 708 534231078 534231796 0.000000e+00 763.0
6 TraesCS6A01G270400 chr6B 81.762 488 83 4 47 529 678533245 678533731 1.540000e-108 403.0
7 TraesCS6A01G270400 chr6B 90.444 293 8 7 731 1011 534234987 534235271 5.630000e-98 368.0
8 TraesCS6A01G270400 chr2D 83.466 1385 188 32 1134 2505 521533467 521534823 0.000000e+00 1251.0
9 TraesCS6A01G270400 chr2D 92.144 611 39 9 2960 3569 643771681 643772283 0.000000e+00 854.0
10 TraesCS6A01G270400 chr2D 96.970 33 1 0 559 591 192734088 192734056 4.980000e-04 56.5
11 TraesCS6A01G270400 chr2A 82.751 1432 199 38 1114 2525 666026600 666025197 0.000000e+00 1232.0
12 TraesCS6A01G270400 chr7D 81.246 1413 224 25 1134 2528 186428447 186427058 0.000000e+00 1103.0
13 TraesCS6A01G270400 chr7D 92.430 568 33 7 3005 3569 123376150 123375590 0.000000e+00 802.0
14 TraesCS6A01G270400 chr7D 76.841 1399 255 49 1134 2526 554321931 554320596 0.000000e+00 725.0
15 TraesCS6A01G270400 chr7B 81.166 1407 229 25 1134 2528 329516537 329515155 0.000000e+00 1098.0
16 TraesCS6A01G270400 chr7B 79.151 1060 179 32 1473 2526 600589938 600590961 0.000000e+00 695.0
17 TraesCS6A01G270400 chr7B 81.224 490 74 12 47 526 667286096 667286577 2.600000e-101 379.0
18 TraesCS6A01G270400 chr5A 97.694 607 13 1 2963 3569 365049090 365048485 0.000000e+00 1042.0
19 TraesCS6A01G270400 chr5A 81.289 481 80 8 47 521 357056922 357056446 7.230000e-102 381.0
20 TraesCS6A01G270400 chr7A 83.585 1060 162 10 1475 2528 198511325 198512378 0.000000e+00 983.0
21 TraesCS6A01G270400 chr7A 76.113 1101 189 51 1464 2526 19960088 19959024 3.180000e-140 508.0
22 TraesCS6A01G270400 chr5D 92.647 612 37 7 2960 3569 52752704 52753309 0.000000e+00 874.0
23 TraesCS6A01G270400 chr5D 81.198 484 82 7 47 525 98721522 98721043 7.230000e-102 381.0
24 TraesCS6A01G270400 chr3A 93.543 573 31 5 2998 3569 84672845 84673412 0.000000e+00 848.0
25 TraesCS6A01G270400 chr3A 91.803 610 39 5 2960 3569 718748803 718749401 0.000000e+00 839.0
26 TraesCS6A01G270400 chr3A 93.220 59 3 1 2959 3016 115383535 115383593 6.350000e-13 86.1
27 TraesCS6A01G270400 chr3A 93.220 59 3 1 2959 3016 115606210 115606268 6.350000e-13 86.1
28 TraesCS6A01G270400 chr1A 91.612 608 47 4 2963 3569 108173995 108173391 0.000000e+00 837.0
29 TraesCS6A01G270400 chr2B 86.269 772 98 8 1758 2525 614419581 614418814 0.000000e+00 832.0
30 TraesCS6A01G270400 chr2B 86.028 773 98 10 1758 2525 614314510 614313743 0.000000e+00 821.0
31 TraesCS6A01G270400 chr2B 81.600 500 79 9 47 538 522824930 522824436 5.550000e-108 401.0
32 TraesCS6A01G270400 chr2B 80.723 498 89 5 47 538 787077757 787078253 7.230000e-102 381.0
33 TraesCS6A01G270400 chr4D 93.369 558 29 7 3014 3569 23977528 23976977 0.000000e+00 819.0
34 TraesCS6A01G270400 chr4D 80.723 498 84 8 47 537 476308127 476307635 9.350000e-101 377.0
35 TraesCS6A01G270400 chr5B 73.589 1276 249 56 1130 2365 685305187 685306414 3.320000e-110 409.0
36 TraesCS6A01G270400 chr5B 77.207 487 85 20 1130 1615 685529724 685529263 9.830000e-66 261.0
37 TraesCS6A01G270400 chr1D 100.000 28 0 0 2775 2802 375210363 375210390 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G270400 chr6A 496576510 496580078 3568 False 6591.000000 6591 100.000 1 3569 1 chr6A.!!$F2 3568
1 TraesCS6A01G270400 chr6A 32184611 32185211 600 False 664.000000 664 86.935 2967 3569 1 chr6A.!!$F1 602
2 TraesCS6A01G270400 chr6D 346832696 346835580 2884 True 1775.000000 2689 88.652 1 2758 2 chr6D.!!$R1 2757
3 TraesCS6A01G270400 chr6B 534231078 534237014 5936 False 1249.333333 2617 90.468 1 2776 3 chr6B.!!$F2 2775
4 TraesCS6A01G270400 chr2D 521533467 521534823 1356 False 1251.000000 1251 83.466 1134 2505 1 chr2D.!!$F1 1371
5 TraesCS6A01G270400 chr2D 643771681 643772283 602 False 854.000000 854 92.144 2960 3569 1 chr2D.!!$F2 609
6 TraesCS6A01G270400 chr2A 666025197 666026600 1403 True 1232.000000 1232 82.751 1114 2525 1 chr2A.!!$R1 1411
7 TraesCS6A01G270400 chr7D 186427058 186428447 1389 True 1103.000000 1103 81.246 1134 2528 1 chr7D.!!$R2 1394
8 TraesCS6A01G270400 chr7D 123375590 123376150 560 True 802.000000 802 92.430 3005 3569 1 chr7D.!!$R1 564
9 TraesCS6A01G270400 chr7D 554320596 554321931 1335 True 725.000000 725 76.841 1134 2526 1 chr7D.!!$R3 1392
10 TraesCS6A01G270400 chr7B 329515155 329516537 1382 True 1098.000000 1098 81.166 1134 2528 1 chr7B.!!$R1 1394
11 TraesCS6A01G270400 chr7B 600589938 600590961 1023 False 695.000000 695 79.151 1473 2526 1 chr7B.!!$F1 1053
12 TraesCS6A01G270400 chr5A 365048485 365049090 605 True 1042.000000 1042 97.694 2963 3569 1 chr5A.!!$R2 606
13 TraesCS6A01G270400 chr7A 198511325 198512378 1053 False 983.000000 983 83.585 1475 2528 1 chr7A.!!$F1 1053
14 TraesCS6A01G270400 chr7A 19959024 19960088 1064 True 508.000000 508 76.113 1464 2526 1 chr7A.!!$R1 1062
15 TraesCS6A01G270400 chr5D 52752704 52753309 605 False 874.000000 874 92.647 2960 3569 1 chr5D.!!$F1 609
16 TraesCS6A01G270400 chr3A 84672845 84673412 567 False 848.000000 848 93.543 2998 3569 1 chr3A.!!$F1 571
17 TraesCS6A01G270400 chr3A 718748803 718749401 598 False 839.000000 839 91.803 2960 3569 1 chr3A.!!$F4 609
18 TraesCS6A01G270400 chr1A 108173391 108173995 604 True 837.000000 837 91.612 2963 3569 1 chr1A.!!$R1 606
19 TraesCS6A01G270400 chr2B 614418814 614419581 767 True 832.000000 832 86.269 1758 2525 1 chr2B.!!$R3 767
20 TraesCS6A01G270400 chr2B 614313743 614314510 767 True 821.000000 821 86.028 1758 2525 1 chr2B.!!$R2 767
21 TraesCS6A01G270400 chr4D 23976977 23977528 551 True 819.000000 819 93.369 3014 3569 1 chr4D.!!$R1 555
22 TraesCS6A01G270400 chr5B 685305187 685306414 1227 False 409.000000 409 73.589 1130 2365 1 chr5B.!!$F1 1235

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 166 0.689080 ACGCCATCCTCCAGATCTGT 60.689 55.0 21.11 0.0 30.59 3.41 F
764 3952 0.748005 GAATCTTGCGGGGCAGCTTA 60.748 55.0 5.82 0.0 40.61 3.09 F
1083 4434 0.241481 CGCGGGATAGAAGACCTAGC 59.759 60.0 0.00 0.0 33.15 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1075 4426 0.034380 TCACCTACGCTGCTAGGTCT 60.034 55.0 20.66 5.58 44.14 3.85 R
2343 5776 0.321671 ACACGTCCTTCATGTCCAGG 59.678 55.0 0.00 0.00 0.00 4.45 R
2831 6265 0.447406 CGTCAGCGCATCCATGAAAA 59.553 50.0 11.47 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.185618 TTGACGGGTCACCTCCTCAG 61.186 60.000 0.04 0.00 39.66 3.35
54 68 1.293924 GAGCTTGACGCATATGCAGT 58.706 50.000 26.52 22.97 42.61 4.40
66 80 4.436852 CGCATATGCAGTTTTACGAACCTT 60.437 41.667 26.52 0.00 42.21 3.50
70 84 4.966965 TGCAGTTTTACGAACCTTCAAA 57.033 36.364 0.00 0.00 0.00 2.69
79 93 4.813296 ACGAACCTTCAAAATGACTCAC 57.187 40.909 0.00 0.00 0.00 3.51
84 98 6.072728 CGAACCTTCAAAATGACTCACCAATA 60.073 38.462 0.00 0.00 0.00 1.90
98 112 2.806434 ACCAATAGTGAAGCCATTGCA 58.194 42.857 0.00 0.00 41.13 4.08
125 140 2.764637 AATCAGACCGGGGCAACACC 62.765 60.000 6.32 0.00 35.43 4.16
151 166 0.689080 ACGCCATCCTCCAGATCTGT 60.689 55.000 21.11 0.00 30.59 3.41
172 187 1.833630 CTCCCCTGCATGACTAAGTCA 59.166 52.381 0.00 0.00 46.90 3.41
226 241 4.112634 ACCACAAACCCAGTACATGATT 57.887 40.909 0.00 0.00 0.00 2.57
274 292 0.968405 ACCACAATTTGCATCCGCTT 59.032 45.000 0.00 0.00 39.64 4.68
329 347 1.154672 CAAACGATGTCACACGGCG 60.155 57.895 4.80 4.80 0.00 6.46
333 351 1.733041 CGATGTCACACGGCGAAGT 60.733 57.895 16.62 9.17 0.00 3.01
393 411 2.811431 CACGCCATCCTTACTTGAACAA 59.189 45.455 0.00 0.00 0.00 2.83
397 415 4.693566 CGCCATCCTTACTTGAACAAACTA 59.306 41.667 0.00 0.00 0.00 2.24
413 431 7.505585 TGAACAAACTAGTTTCCAAATCCATCT 59.494 33.333 18.00 0.00 0.00 2.90
415 433 7.004086 ACAAACTAGTTTCCAAATCCATCTCA 58.996 34.615 18.00 0.00 0.00 3.27
428 446 3.459828 TCCATCTCAAACCATAGGACCA 58.540 45.455 0.00 0.00 0.00 4.02
437 455 0.758734 CCATAGGACCAATCGCCTCA 59.241 55.000 0.00 0.00 35.73 3.86
441 459 2.247437 GGACCAATCGCCTCATCGC 61.247 63.158 0.00 0.00 0.00 4.58
450 468 3.588277 GCCTCATCGCGGAAAGATA 57.412 52.632 6.13 0.00 0.00 1.98
473 491 2.113860 AGCTTCTTTATTCAGCGCCA 57.886 45.000 2.29 0.00 38.66 5.69
474 492 1.740025 AGCTTCTTTATTCAGCGCCAC 59.260 47.619 2.29 0.00 38.66 5.01
530 548 6.406624 CGACCCAAAAATCTAAGCTACTAGGA 60.407 42.308 0.00 0.00 0.00 2.94
622 643 8.837788 TCATCAATACATGTGCCTATTTCTAG 57.162 34.615 9.11 0.00 0.00 2.43
627 648 8.986847 CAATACATGTGCCTATTTCTAGAGAAG 58.013 37.037 9.11 0.00 35.21 2.85
629 650 7.187824 ACATGTGCCTATTTCTAGAGAAGAA 57.812 36.000 0.00 0.00 42.62 2.52
646 667 8.336801 AGAGAAGAAATGCCTAATTAAACGTT 57.663 30.769 0.00 0.00 0.00 3.99
647 668 8.451748 AGAGAAGAAATGCCTAATTAAACGTTC 58.548 33.333 0.00 0.00 0.00 3.95
669 690 2.288395 ACCTCGTACAAACAAGTACCGG 60.288 50.000 0.00 0.00 40.94 5.28
672 693 2.100584 TCGTACAAACAAGTACCGGTGT 59.899 45.455 19.93 2.81 40.94 4.16
673 694 2.472488 CGTACAAACAAGTACCGGTGTC 59.528 50.000 19.93 10.57 40.94 3.67
718 1542 5.007682 TCCAAGTATCTTTTGTAAGCACCC 58.992 41.667 0.00 0.00 0.00 4.61
764 3952 0.748005 GAATCTTGCGGGGCAGCTTA 60.748 55.000 5.82 0.00 40.61 3.09
781 3969 5.736358 GCAGCTTATCTTTGTTTCATTCTCG 59.264 40.000 0.00 0.00 0.00 4.04
845 4034 6.510157 GCTCGTCACATGTCAATCGATTTATT 60.510 38.462 8.21 0.00 0.00 1.40
846 4035 7.302350 TCGTCACATGTCAATCGATTTATTT 57.698 32.000 8.21 0.00 0.00 1.40
847 4036 8.413899 TCGTCACATGTCAATCGATTTATTTA 57.586 30.769 8.21 0.00 0.00 1.40
848 4037 8.325282 TCGTCACATGTCAATCGATTTATTTAC 58.675 33.333 8.21 3.03 0.00 2.01
1011 4341 4.414677 TCTCTCTATAGATGCACCATGCT 58.585 43.478 2.11 0.00 45.31 3.79
1012 4342 4.837298 TCTCTCTATAGATGCACCATGCTT 59.163 41.667 2.11 0.00 45.31 3.91
1013 4343 6.012745 TCTCTCTATAGATGCACCATGCTTA 58.987 40.000 2.11 0.00 45.31 3.09
1014 4344 6.030548 TCTCTATAGATGCACCATGCTTAC 57.969 41.667 2.11 0.00 45.31 2.34
1029 4380 1.197036 GCTTACACTGAAAGCGGGAAC 59.803 52.381 0.00 0.00 39.92 3.62
1077 4428 4.624117 CGCGCGCGGGATAGAAGA 62.624 66.667 43.28 0.00 35.56 2.87
1078 4429 3.030882 GCGCGCGGGATAGAAGAC 61.031 66.667 33.06 6.44 0.00 3.01
1079 4430 2.354773 CGCGCGGGATAGAAGACC 60.355 66.667 24.84 0.00 0.00 3.85
1083 4434 0.241481 CGCGGGATAGAAGACCTAGC 59.759 60.000 0.00 0.00 33.15 3.42
1717 5096 2.355718 CAAGTTTTTGCCGCGGGG 60.356 61.111 29.38 15.40 0.00 5.73
1750 5132 2.689691 GGCCTCCACCCCATGCTTA 61.690 63.158 0.00 0.00 0.00 3.09
1900 5288 2.359850 TCCACGCCATGTTCCAGC 60.360 61.111 0.00 0.00 0.00 4.85
2016 5413 1.099879 GCAGCCTCGCCATCATTTCT 61.100 55.000 0.00 0.00 0.00 2.52
2469 5902 0.904649 TGAGACAAGACATCGCCCAT 59.095 50.000 0.00 0.00 0.00 4.00
2569 6002 2.823154 CCAAGCCCGGACAAAGAATAAA 59.177 45.455 0.73 0.00 0.00 1.40
2621 6054 6.807230 GCACCTTGTTACTAGTATCATATCGG 59.193 42.308 13.19 12.88 0.00 4.18
2664 6097 1.710013 AAGGCAGTACGAACATGACG 58.290 50.000 0.00 7.63 0.00 4.35
2676 6109 3.303329 CGAACATGACGATGCCTATTTGG 60.303 47.826 0.00 0.00 39.35 3.28
2677 6110 3.558931 ACATGACGATGCCTATTTGGA 57.441 42.857 0.00 0.00 37.63 3.53
2707 6140 2.557924 TGTTGCTGCTAAATCCTTGTGG 59.442 45.455 0.00 0.00 0.00 4.17
2767 6201 3.006967 GTGTCACATCTCACTACCTTGGT 59.993 47.826 0.00 0.00 0.00 3.67
2784 6218 3.002038 TGGTTTACCAGTCCGTTTTGT 57.998 42.857 0.00 0.00 42.01 2.83
2785 6219 2.944349 TGGTTTACCAGTCCGTTTTGTC 59.056 45.455 0.00 0.00 42.01 3.18
2786 6220 3.208594 GGTTTACCAGTCCGTTTTGTCT 58.791 45.455 0.00 0.00 35.64 3.41
2787 6221 3.002965 GGTTTACCAGTCCGTTTTGTCTG 59.997 47.826 0.00 0.00 35.64 3.51
2788 6222 3.823281 TTACCAGTCCGTTTTGTCTGA 57.177 42.857 0.00 0.00 0.00 3.27
2789 6223 2.702592 ACCAGTCCGTTTTGTCTGAA 57.297 45.000 0.00 0.00 0.00 3.02
2790 6224 3.208747 ACCAGTCCGTTTTGTCTGAAT 57.791 42.857 0.00 0.00 0.00 2.57
2791 6225 3.551846 ACCAGTCCGTTTTGTCTGAATT 58.448 40.909 0.00 0.00 0.00 2.17
2792 6226 3.951680 ACCAGTCCGTTTTGTCTGAATTT 59.048 39.130 0.00 0.00 0.00 1.82
2793 6227 4.036380 ACCAGTCCGTTTTGTCTGAATTTC 59.964 41.667 0.00 0.00 0.00 2.17
2794 6228 4.211389 CAGTCCGTTTTGTCTGAATTTCG 58.789 43.478 0.00 0.00 0.00 3.46
2795 6229 3.875134 AGTCCGTTTTGTCTGAATTTCGT 59.125 39.130 0.00 0.00 0.00 3.85
2796 6230 4.025145 AGTCCGTTTTGTCTGAATTTCGTC 60.025 41.667 0.00 0.00 0.00 4.20
2797 6231 3.249080 TCCGTTTTGTCTGAATTTCGTCC 59.751 43.478 0.00 0.00 0.00 4.79
2798 6232 3.002862 CCGTTTTGTCTGAATTTCGTCCA 59.997 43.478 0.00 0.00 0.00 4.02
2799 6233 4.320202 CCGTTTTGTCTGAATTTCGTCCAT 60.320 41.667 0.00 0.00 0.00 3.41
2800 6234 5.212194 CGTTTTGTCTGAATTTCGTCCATT 58.788 37.500 0.00 0.00 0.00 3.16
2801 6235 5.685511 CGTTTTGTCTGAATTTCGTCCATTT 59.314 36.000 0.00 0.00 0.00 2.32
2802 6236 6.344936 CGTTTTGTCTGAATTTCGTCCATTTG 60.345 38.462 0.00 0.00 0.00 2.32
2803 6237 6.384258 TTTGTCTGAATTTCGTCCATTTGA 57.616 33.333 0.00 0.00 0.00 2.69
2804 6238 6.384258 TTGTCTGAATTTCGTCCATTTGAA 57.616 33.333 0.00 0.00 0.00 2.69
2805 6239 6.573664 TGTCTGAATTTCGTCCATTTGAAT 57.426 33.333 0.00 0.00 0.00 2.57
2806 6240 7.680442 TGTCTGAATTTCGTCCATTTGAATA 57.320 32.000 0.00 0.00 0.00 1.75
2807 6241 7.751732 TGTCTGAATTTCGTCCATTTGAATAG 58.248 34.615 0.00 0.00 0.00 1.73
2808 6242 7.606073 TGTCTGAATTTCGTCCATTTGAATAGA 59.394 33.333 0.00 0.00 0.00 1.98
2809 6243 8.450964 GTCTGAATTTCGTCCATTTGAATAGAA 58.549 33.333 0.00 0.00 0.00 2.10
2810 6244 9.008965 TCTGAATTTCGTCCATTTGAATAGAAA 57.991 29.630 0.00 0.00 31.90 2.52
2811 6245 9.624697 CTGAATTTCGTCCATTTGAATAGAAAA 57.375 29.630 0.00 0.00 31.46 2.29
2812 6246 9.973450 TGAATTTCGTCCATTTGAATAGAAAAA 57.027 25.926 0.00 0.00 31.46 1.94
2816 6250 9.973450 TTTCGTCCATTTGAATAGAAAAATGAA 57.027 25.926 9.16 0.00 43.41 2.57
2817 6251 9.973450 TTCGTCCATTTGAATAGAAAAATGAAA 57.027 25.926 9.16 0.00 43.41 2.69
2818 6252 9.405587 TCGTCCATTTGAATAGAAAAATGAAAC 57.594 29.630 9.16 6.61 43.41 2.78
2819 6253 8.365210 CGTCCATTTGAATAGAAAAATGAAACG 58.635 33.333 9.16 12.66 43.41 3.60
2820 6254 8.647226 GTCCATTTGAATAGAAAAATGAAACGG 58.353 33.333 9.16 0.00 43.41 4.44
2821 6255 7.330700 TCCATTTGAATAGAAAAATGAAACGGC 59.669 33.333 9.16 0.00 43.41 5.68
2822 6256 6.683090 TTTGAATAGAAAAATGAAACGGCG 57.317 33.333 4.80 4.80 0.00 6.46
2823 6257 5.365403 TGAATAGAAAAATGAAACGGCGT 57.635 34.783 6.77 6.77 0.00 5.68
2824 6258 5.387279 TGAATAGAAAAATGAAACGGCGTC 58.613 37.500 15.17 1.45 0.00 5.19
2825 6259 5.180492 TGAATAGAAAAATGAAACGGCGTCT 59.820 36.000 15.17 0.00 0.00 4.18
2826 6260 6.369340 TGAATAGAAAAATGAAACGGCGTCTA 59.631 34.615 15.17 7.42 0.00 2.59
2827 6261 4.663636 AGAAAAATGAAACGGCGTCTAG 57.336 40.909 15.17 0.00 0.00 2.43
2837 6271 7.400915 ATGAAACGGCGTCTAGCTATTTTCAT 61.401 38.462 15.17 17.87 43.96 2.57
2838 6272 9.309274 ATGAAACGGCGTCTAGCTATTTTCATG 62.309 40.741 22.39 0.00 45.45 3.07
2842 6276 5.274881 GCGTCTAGCTATTTTCATGGATG 57.725 43.478 0.00 0.00 44.04 3.51
2843 6277 4.377841 GCGTCTAGCTATTTTCATGGATGC 60.378 45.833 0.00 0.00 44.04 3.91
2844 6278 4.143242 CGTCTAGCTATTTTCATGGATGCG 60.143 45.833 0.00 0.00 0.00 4.73
2845 6279 3.748048 TCTAGCTATTTTCATGGATGCGC 59.252 43.478 0.00 0.00 0.00 6.09
2846 6280 2.579873 AGCTATTTTCATGGATGCGCT 58.420 42.857 9.73 0.00 0.00 5.92
2847 6281 2.292569 AGCTATTTTCATGGATGCGCTG 59.707 45.455 9.73 0.00 0.00 5.18
2848 6282 2.291465 GCTATTTTCATGGATGCGCTGA 59.709 45.455 9.73 0.00 0.00 4.26
2849 6283 2.857592 ATTTTCATGGATGCGCTGAC 57.142 45.000 9.73 0.00 0.00 3.51
2850 6284 0.447406 TTTTCATGGATGCGCTGACG 59.553 50.000 9.73 0.00 44.07 4.35
2851 6285 1.368345 TTTCATGGATGCGCTGACGG 61.368 55.000 9.73 0.00 40.57 4.79
2852 6286 2.512286 CATGGATGCGCTGACGGT 60.512 61.111 9.73 0.00 40.57 4.83
2853 6287 2.512286 ATGGATGCGCTGACGGTG 60.512 61.111 9.73 0.00 40.57 4.94
2885 6319 2.261671 ACGCATCTGGTCCGTCAC 59.738 61.111 0.00 0.00 0.00 3.67
2886 6320 2.880879 CGCATCTGGTCCGTCACG 60.881 66.667 0.00 0.00 0.00 4.35
2896 6330 3.760035 CCGTCACGGCTGGCTAGT 61.760 66.667 1.50 0.00 41.17 2.57
2897 6331 2.507102 CGTCACGGCTGGCTAGTG 60.507 66.667 0.00 12.56 37.24 2.74
2898 6332 2.815647 GTCACGGCTGGCTAGTGC 60.816 66.667 0.00 0.00 35.97 4.40
2936 6370 8.601243 AGTCGCATTTCTTTATTTTATCAACG 57.399 30.769 0.00 0.00 0.00 4.10
2937 6371 8.447833 AGTCGCATTTCTTTATTTTATCAACGA 58.552 29.630 0.00 0.00 0.00 3.85
2938 6372 9.221775 GTCGCATTTCTTTATTTTATCAACGAT 57.778 29.630 0.00 0.00 0.00 3.73
2939 6373 9.781834 TCGCATTTCTTTATTTTATCAACGATT 57.218 25.926 0.00 0.00 0.00 3.34
3082 6541 1.593265 CATTCCTTGTTGGCCTGCC 59.407 57.895 3.32 0.00 35.26 4.85
3121 6580 1.114722 CATGTGGGCTGTTGTTGGGT 61.115 55.000 0.00 0.00 0.00 4.51
3156 6617 8.328146 GTTTTCCTGTTTTTCTATTTGTGCTTC 58.672 33.333 0.00 0.00 0.00 3.86
3542 7010 8.696410 TGATTTAACTTTTCCTGTTGTTTGTC 57.304 30.769 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 68 7.190871 GTGAGTCATTTTGAAGGTTCGTAAAA 58.809 34.615 0.00 0.00 0.00 1.52
79 93 2.756760 ACTGCAATGGCTTCACTATTGG 59.243 45.455 0.00 0.00 44.94 3.16
84 98 1.985473 TCAACTGCAATGGCTTCACT 58.015 45.000 0.00 0.00 41.91 3.41
98 112 1.279271 CCCCGGTCTGATTCTTCAACT 59.721 52.381 0.00 0.00 0.00 3.16
125 140 2.187946 GAGGATGGCGTGTCTGGG 59.812 66.667 0.00 0.00 0.00 4.45
128 143 0.689080 ATCTGGAGGATGGCGTGTCT 60.689 55.000 0.00 0.00 32.69 3.41
151 166 2.111384 GACTTAGTCATGCAGGGGAGA 58.889 52.381 7.59 0.00 32.09 3.71
172 187 3.264450 CAGGTATGGTTTCCTCCTCTTGT 59.736 47.826 0.00 0.00 30.91 3.16
317 335 1.374252 GGACTTCGCCGTGTGACAT 60.374 57.895 0.00 0.00 0.00 3.06
393 411 7.039714 GGTTTGAGATGGATTTGGAAACTAGTT 60.040 37.037 1.12 1.12 0.00 2.24
397 415 5.147032 TGGTTTGAGATGGATTTGGAAACT 58.853 37.500 0.00 0.00 0.00 2.66
408 426 3.931907 TGGTCCTATGGTTTGAGATGG 57.068 47.619 0.00 0.00 0.00 3.51
413 431 2.639065 GCGATTGGTCCTATGGTTTGA 58.361 47.619 0.00 0.00 0.00 2.69
415 433 1.564348 AGGCGATTGGTCCTATGGTTT 59.436 47.619 0.00 0.00 0.00 3.27
437 455 3.393089 AGCTTCATATCTTTCCGCGAT 57.607 42.857 8.23 0.00 0.00 4.58
441 459 8.830580 TGAATAAAGAAGCTTCATATCTTTCCG 58.169 33.333 27.57 0.00 41.24 4.30
446 464 6.073331 GCGCTGAATAAAGAAGCTTCATATCT 60.073 38.462 27.57 14.67 34.72 1.98
450 468 3.065925 GGCGCTGAATAAAGAAGCTTCAT 59.934 43.478 27.57 14.17 34.72 2.57
473 491 2.136878 TTTTGGCGGTGGCAATGGT 61.137 52.632 6.62 0.00 46.84 3.55
474 492 1.667510 GTTTTGGCGGTGGCAATGG 60.668 57.895 6.62 0.00 46.84 3.16
530 548 5.473066 TCGTGTAGCTTTAGGTTTTAGGT 57.527 39.130 0.00 0.00 0.00 3.08
592 613 8.467963 AATAGGCACATGTATTGATGATTCAA 57.532 30.769 0.00 0.00 45.57 2.69
597 618 8.650490 TCTAGAAATAGGCACATGTATTGATGA 58.350 33.333 0.00 0.00 0.00 2.92
603 624 8.484214 TCTTCTCTAGAAATAGGCACATGTAT 57.516 34.615 0.00 0.00 33.07 2.29
604 625 7.898014 TCTTCTCTAGAAATAGGCACATGTA 57.102 36.000 0.00 0.00 33.07 2.29
605 626 6.798427 TCTTCTCTAGAAATAGGCACATGT 57.202 37.500 0.00 0.00 33.07 3.21
622 643 8.234546 TGAACGTTTAATTAGGCATTTCTTCTC 58.765 33.333 0.46 0.00 0.00 2.87
627 648 6.617879 AGGTGAACGTTTAATTAGGCATTTC 58.382 36.000 0.46 0.00 0.00 2.17
629 650 5.163794 CGAGGTGAACGTTTAATTAGGCATT 60.164 40.000 0.46 0.00 0.00 3.56
642 663 2.582728 TGTTTGTACGAGGTGAACGT 57.417 45.000 0.00 0.00 45.75 3.99
646 667 3.550639 CGGTACTTGTTTGTACGAGGTGA 60.551 47.826 0.00 0.00 42.53 4.02
647 668 2.727798 CGGTACTTGTTTGTACGAGGTG 59.272 50.000 0.00 0.00 42.53 4.00
709 730 0.039165 GCAAGTTGCAGGGTGCTTAC 60.039 55.000 22.90 0.00 45.31 2.34
738 1562 1.406887 GCCCCGCAAGATTCTAAGACA 60.407 52.381 0.00 0.00 43.02 3.41
764 3952 3.074412 ACGGCGAGAATGAAACAAAGAT 58.926 40.909 16.62 0.00 0.00 2.40
781 3969 0.530870 GCCAGATTCTAGTGGACGGC 60.531 60.000 1.36 1.01 35.67 5.68
1011 4341 2.623878 TGTTCCCGCTTTCAGTGTAA 57.376 45.000 0.00 0.00 0.00 2.41
1012 4342 2.103432 TCTTGTTCCCGCTTTCAGTGTA 59.897 45.455 0.00 0.00 0.00 2.90
1013 4343 1.134220 TCTTGTTCCCGCTTTCAGTGT 60.134 47.619 0.00 0.00 0.00 3.55
1014 4344 1.532868 CTCTTGTTCCCGCTTTCAGTG 59.467 52.381 0.00 0.00 0.00 3.66
1024 4375 1.202940 AGCTGGGTTTCTCTTGTTCCC 60.203 52.381 0.00 0.00 38.68 3.97
1029 4380 0.886490 ACGCAGCTGGGTTTCTCTTG 60.886 55.000 29.00 0.00 38.04 3.02
1064 4415 0.241481 GCTAGGTCTTCTATCCCGCG 59.759 60.000 0.00 0.00 0.00 6.46
1065 4416 1.271102 CTGCTAGGTCTTCTATCCCGC 59.729 57.143 0.00 0.00 0.00 6.13
1066 4417 1.271102 GCTGCTAGGTCTTCTATCCCG 59.729 57.143 0.00 0.00 0.00 5.14
1067 4418 1.271102 CGCTGCTAGGTCTTCTATCCC 59.729 57.143 0.00 0.00 0.00 3.85
1068 4419 1.957877 ACGCTGCTAGGTCTTCTATCC 59.042 52.381 0.00 0.00 0.00 2.59
1069 4420 3.189702 CCTACGCTGCTAGGTCTTCTATC 59.810 52.174 13.66 0.00 0.00 2.08
1070 4421 3.150767 CCTACGCTGCTAGGTCTTCTAT 58.849 50.000 13.66 0.00 0.00 1.98
1071 4422 2.092538 ACCTACGCTGCTAGGTCTTCTA 60.093 50.000 18.86 0.00 42.63 2.10
1072 4423 1.341187 ACCTACGCTGCTAGGTCTTCT 60.341 52.381 18.86 3.51 42.63 2.85
1073 4424 1.104630 ACCTACGCTGCTAGGTCTTC 58.895 55.000 18.86 0.00 42.63 2.87
1074 4425 0.818296 CACCTACGCTGCTAGGTCTT 59.182 55.000 20.66 5.05 44.14 3.01
1075 4426 0.034380 TCACCTACGCTGCTAGGTCT 60.034 55.000 20.66 5.58 44.14 3.85
1076 4427 0.382515 CTCACCTACGCTGCTAGGTC 59.617 60.000 20.66 0.00 44.14 3.85
1077 4428 1.668101 GCTCACCTACGCTGCTAGGT 61.668 60.000 18.86 18.86 46.50 3.08
1078 4429 1.066587 GCTCACCTACGCTGCTAGG 59.933 63.158 17.89 17.89 39.55 3.02
1079 4430 1.298713 CGCTCACCTACGCTGCTAG 60.299 63.158 0.00 0.00 0.00 3.42
1750 5132 2.474816 GCTGAACTCGGCGATTATCTT 58.525 47.619 11.27 0.00 38.61 2.40
2016 5413 0.536687 ACTCGGTGAACTCCTCGACA 60.537 55.000 0.00 0.00 0.00 4.35
2343 5776 0.321671 ACACGTCCTTCATGTCCAGG 59.678 55.000 0.00 0.00 0.00 4.45
2456 5889 2.597340 CCCCATGGGCGATGTCTT 59.403 61.111 26.87 0.00 35.35 3.01
2553 5986 1.749063 GGCCTTTATTCTTTGTCCGGG 59.251 52.381 0.00 0.00 0.00 5.73
2585 6018 2.990967 AAGGTGCCAATGCCGGTG 60.991 61.111 1.90 0.00 36.33 4.94
2586 6019 2.990967 CAAGGTGCCAATGCCGGT 60.991 61.111 1.90 0.00 36.33 5.28
2621 6054 1.268234 GCAAGACTCACACAGCAACAC 60.268 52.381 0.00 0.00 0.00 3.32
2664 6097 6.576185 ACAAATGTCATTCCAAATAGGCATC 58.424 36.000 0.00 0.00 37.29 3.91
2676 6109 6.035327 GGATTTAGCAGCAACAAATGTCATTC 59.965 38.462 0.00 0.00 0.00 2.67
2677 6110 5.870978 GGATTTAGCAGCAACAAATGTCATT 59.129 36.000 0.00 0.00 0.00 2.57
2707 6140 0.515564 GTCACACCGCAATGTGGTAC 59.484 55.000 18.98 9.81 45.40 3.34
2719 6152 3.596214 ACATCCTACGAATTGTCACACC 58.404 45.455 0.00 0.00 0.00 4.16
2720 6153 4.688879 TGAACATCCTACGAATTGTCACAC 59.311 41.667 0.00 0.00 0.00 3.82
2767 6201 4.139859 TCAGACAAAACGGACTGGTAAA 57.860 40.909 0.00 0.00 0.00 2.01
2776 6210 3.002862 TGGACGAAATTCAGACAAAACGG 59.997 43.478 0.00 0.00 0.00 4.44
2777 6211 4.203950 TGGACGAAATTCAGACAAAACG 57.796 40.909 0.00 0.00 0.00 3.60
2778 6212 6.695278 TCAAATGGACGAAATTCAGACAAAAC 59.305 34.615 0.00 0.00 0.00 2.43
2779 6213 6.800543 TCAAATGGACGAAATTCAGACAAAA 58.199 32.000 0.00 0.00 0.00 2.44
2780 6214 6.384258 TCAAATGGACGAAATTCAGACAAA 57.616 33.333 0.00 0.00 0.00 2.83
2781 6215 6.384258 TTCAAATGGACGAAATTCAGACAA 57.616 33.333 0.00 0.00 0.00 3.18
2782 6216 6.573664 ATTCAAATGGACGAAATTCAGACA 57.426 33.333 0.00 0.00 0.00 3.41
2783 6217 7.974675 TCTATTCAAATGGACGAAATTCAGAC 58.025 34.615 0.00 0.00 0.00 3.51
2784 6218 8.560355 TTCTATTCAAATGGACGAAATTCAGA 57.440 30.769 0.00 0.00 0.00 3.27
2785 6219 9.624697 TTTTCTATTCAAATGGACGAAATTCAG 57.375 29.630 0.00 0.00 0.00 3.02
2786 6220 9.973450 TTTTTCTATTCAAATGGACGAAATTCA 57.027 25.926 0.00 0.00 0.00 2.57
2790 6224 9.973450 TTCATTTTTCTATTCAAATGGACGAAA 57.027 25.926 0.00 0.00 39.76 3.46
2791 6225 9.973450 TTTCATTTTTCTATTCAAATGGACGAA 57.027 25.926 0.00 0.00 39.76 3.85
2792 6226 9.405587 GTTTCATTTTTCTATTCAAATGGACGA 57.594 29.630 0.00 0.00 39.76 4.20
2793 6227 8.365210 CGTTTCATTTTTCTATTCAAATGGACG 58.635 33.333 14.16 14.16 39.76 4.79
2794 6228 8.647226 CCGTTTCATTTTTCTATTCAAATGGAC 58.353 33.333 5.11 4.36 39.76 4.02
2795 6229 7.330700 GCCGTTTCATTTTTCTATTCAAATGGA 59.669 33.333 0.00 0.00 39.76 3.41
2796 6230 7.455447 GCCGTTTCATTTTTCTATTCAAATGG 58.545 34.615 5.11 0.00 39.76 3.16
2797 6231 7.148820 ACGCCGTTTCATTTTTCTATTCAAATG 60.149 33.333 0.00 0.00 40.39 2.32
2798 6232 6.866248 ACGCCGTTTCATTTTTCTATTCAAAT 59.134 30.769 0.00 0.00 0.00 2.32
2799 6233 6.210078 ACGCCGTTTCATTTTTCTATTCAAA 58.790 32.000 0.00 0.00 0.00 2.69
2800 6234 5.764131 ACGCCGTTTCATTTTTCTATTCAA 58.236 33.333 0.00 0.00 0.00 2.69
2801 6235 5.180492 AGACGCCGTTTCATTTTTCTATTCA 59.820 36.000 0.00 0.00 0.00 2.57
2802 6236 5.628134 AGACGCCGTTTCATTTTTCTATTC 58.372 37.500 0.00 0.00 0.00 1.75
2803 6237 5.622770 AGACGCCGTTTCATTTTTCTATT 57.377 34.783 0.00 0.00 0.00 1.73
2804 6238 5.220605 GCTAGACGCCGTTTCATTTTTCTAT 60.221 40.000 0.00 0.00 0.00 1.98
2805 6239 4.092383 GCTAGACGCCGTTTCATTTTTCTA 59.908 41.667 0.00 0.00 0.00 2.10
2806 6240 3.120304 GCTAGACGCCGTTTCATTTTTCT 60.120 43.478 0.00 0.00 0.00 2.52
2807 6241 3.120304 AGCTAGACGCCGTTTCATTTTTC 60.120 43.478 0.00 0.00 40.39 2.29
2808 6242 2.812011 AGCTAGACGCCGTTTCATTTTT 59.188 40.909 0.00 0.00 40.39 1.94
2809 6243 2.423577 AGCTAGACGCCGTTTCATTTT 58.576 42.857 0.00 0.00 40.39 1.82
2810 6244 2.094762 AGCTAGACGCCGTTTCATTT 57.905 45.000 0.00 0.00 40.39 2.32
2811 6245 2.953466 TAGCTAGACGCCGTTTCATT 57.047 45.000 0.00 0.00 40.39 2.57
2812 6246 3.454371 AATAGCTAGACGCCGTTTCAT 57.546 42.857 0.00 0.00 40.39 2.57
2813 6247 2.953466 AATAGCTAGACGCCGTTTCA 57.047 45.000 0.00 0.00 40.39 2.69
2814 6248 3.615496 TGAAAATAGCTAGACGCCGTTTC 59.385 43.478 0.00 1.77 40.39 2.78
2815 6249 3.592059 TGAAAATAGCTAGACGCCGTTT 58.408 40.909 0.00 0.00 40.39 3.60
2816 6250 3.241067 TGAAAATAGCTAGACGCCGTT 57.759 42.857 0.00 0.00 40.39 4.44
2817 6251 2.953466 TGAAAATAGCTAGACGCCGT 57.047 45.000 0.00 0.00 40.39 5.68
2818 6252 2.476619 CCATGAAAATAGCTAGACGCCG 59.523 50.000 0.00 0.00 40.39 6.46
2819 6253 3.728845 TCCATGAAAATAGCTAGACGCC 58.271 45.455 0.00 0.00 40.39 5.68
2820 6254 4.377841 GCATCCATGAAAATAGCTAGACGC 60.378 45.833 0.00 0.00 39.57 5.19
2821 6255 4.143242 CGCATCCATGAAAATAGCTAGACG 60.143 45.833 0.00 0.00 0.00 4.18
2822 6256 4.377841 GCGCATCCATGAAAATAGCTAGAC 60.378 45.833 0.30 0.00 0.00 2.59
2823 6257 3.748048 GCGCATCCATGAAAATAGCTAGA 59.252 43.478 0.30 0.00 0.00 2.43
2824 6258 3.750130 AGCGCATCCATGAAAATAGCTAG 59.250 43.478 11.47 0.00 0.00 3.42
2825 6259 3.499537 CAGCGCATCCATGAAAATAGCTA 59.500 43.478 11.47 0.00 0.00 3.32
2826 6260 2.292569 CAGCGCATCCATGAAAATAGCT 59.707 45.455 11.47 0.00 0.00 3.32
2827 6261 2.291465 TCAGCGCATCCATGAAAATAGC 59.709 45.455 11.47 0.00 0.00 2.97
2828 6262 3.605461 CGTCAGCGCATCCATGAAAATAG 60.605 47.826 11.47 0.00 0.00 1.73
2829 6263 2.287644 CGTCAGCGCATCCATGAAAATA 59.712 45.455 11.47 0.00 0.00 1.40
2830 6264 1.064505 CGTCAGCGCATCCATGAAAAT 59.935 47.619 11.47 0.00 0.00 1.82
2831 6265 0.447406 CGTCAGCGCATCCATGAAAA 59.553 50.000 11.47 0.00 0.00 2.29
2832 6266 1.368345 CCGTCAGCGCATCCATGAAA 61.368 55.000 11.47 0.00 36.67 2.69
2833 6267 1.815003 CCGTCAGCGCATCCATGAA 60.815 57.895 11.47 0.00 36.67 2.57
2834 6268 2.202919 CCGTCAGCGCATCCATGA 60.203 61.111 11.47 0.00 36.67 3.07
2835 6269 2.512286 ACCGTCAGCGCATCCATG 60.512 61.111 11.47 0.00 36.67 3.66
2836 6270 2.512286 CACCGTCAGCGCATCCAT 60.512 61.111 11.47 0.00 36.67 3.41
2880 6314 2.507102 CACTAGCCAGCCGTGACG 60.507 66.667 0.00 0.00 0.00 4.35
2881 6315 2.815647 GCACTAGCCAGCCGTGAC 60.816 66.667 12.27 2.57 33.58 3.67
2910 6344 9.697250 CGTTGATAAAATAAAGAAATGCGACTA 57.303 29.630 0.00 0.00 0.00 2.59
2911 6345 8.447833 TCGTTGATAAAATAAAGAAATGCGACT 58.552 29.630 0.00 0.00 0.00 4.18
2912 6346 8.595781 TCGTTGATAAAATAAAGAAATGCGAC 57.404 30.769 0.00 0.00 0.00 5.19
2913 6347 9.781834 AATCGTTGATAAAATAAAGAAATGCGA 57.218 25.926 0.00 0.00 0.00 5.10
2941 6375 9.921637 GATAGAACCAAAAACCAATGTATCAAA 57.078 29.630 0.00 0.00 0.00 2.69
2942 6376 9.308000 AGATAGAACCAAAAACCAATGTATCAA 57.692 29.630 0.00 0.00 0.00 2.57
2943 6377 8.877864 AGATAGAACCAAAAACCAATGTATCA 57.122 30.769 0.00 0.00 0.00 2.15
2945 6379 9.408648 CCTAGATAGAACCAAAAACCAATGTAT 57.591 33.333 0.00 0.00 0.00 2.29
2946 6380 8.387813 ACCTAGATAGAACCAAAAACCAATGTA 58.612 33.333 0.00 0.00 0.00 2.29
2947 6381 7.238710 ACCTAGATAGAACCAAAAACCAATGT 58.761 34.615 0.00 0.00 0.00 2.71
2948 6382 7.611855 AGACCTAGATAGAACCAAAAACCAATG 59.388 37.037 0.00 0.00 0.00 2.82
2949 6383 7.699878 AGACCTAGATAGAACCAAAAACCAAT 58.300 34.615 0.00 0.00 0.00 3.16
2950 6384 7.086685 AGACCTAGATAGAACCAAAAACCAA 57.913 36.000 0.00 0.00 0.00 3.67
2951 6385 6.271391 TGAGACCTAGATAGAACCAAAAACCA 59.729 38.462 0.00 0.00 0.00 3.67
2952 6386 6.708285 TGAGACCTAGATAGAACCAAAAACC 58.292 40.000 0.00 0.00 0.00 3.27
2953 6387 7.387643 ACTGAGACCTAGATAGAACCAAAAAC 58.612 38.462 0.00 0.00 0.00 2.43
2954 6388 7.554959 ACTGAGACCTAGATAGAACCAAAAA 57.445 36.000 0.00 0.00 0.00 1.94
2955 6389 6.127703 CGACTGAGACCTAGATAGAACCAAAA 60.128 42.308 0.00 0.00 0.00 2.44
2956 6390 5.357314 CGACTGAGACCTAGATAGAACCAAA 59.643 44.000 0.00 0.00 0.00 3.28
2957 6391 4.882427 CGACTGAGACCTAGATAGAACCAA 59.118 45.833 0.00 0.00 0.00 3.67
2958 6392 4.163649 TCGACTGAGACCTAGATAGAACCA 59.836 45.833 0.00 0.00 0.00 3.67
2959 6393 4.706035 TCGACTGAGACCTAGATAGAACC 58.294 47.826 0.00 0.00 0.00 3.62
2960 6394 6.870971 AATCGACTGAGACCTAGATAGAAC 57.129 41.667 0.00 0.00 0.00 3.01
2961 6395 8.430431 TCTAAATCGACTGAGACCTAGATAGAA 58.570 37.037 0.00 0.00 0.00 2.10
3082 6541 0.947244 GTGAGGCAACACAGGTCAAG 59.053 55.000 9.34 0.00 38.06 3.02
3156 6617 5.352284 ACAATGTTCTAGCGATCCAGTAAG 58.648 41.667 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.