Multiple sequence alignment - TraesCS6A01G270000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G270000 chr6A 100.000 3923 0 0 1 3923 496467099 496471021 0.000000e+00 7245.0
1 TraesCS6A01G270000 chr6A 90.909 77 6 1 3800 3876 496470814 496470889 6.930000e-18 102.0
2 TraesCS6A01G270000 chr6A 90.909 77 6 1 3716 3791 496470898 496470974 6.930000e-18 102.0
3 TraesCS6A01G270000 chr6B 94.815 1755 53 9 572 2323 534088590 534090309 0.000000e+00 2702.0
4 TraesCS6A01G270000 chr6B 93.208 854 41 8 2377 3221 534090530 534091375 0.000000e+00 1240.0
5 TraesCS6A01G270000 chr6B 98.182 55 1 0 3738 3792 534091782 534091836 3.230000e-16 97.1
6 TraesCS6A01G270000 chr6B 94.545 55 2 1 3822 3876 534091782 534091835 2.510000e-12 84.2
7 TraesCS6A01G270000 chr6D 95.461 1366 44 3 762 2122 346961929 346960577 0.000000e+00 2163.0
8 TraesCS6A01G270000 chr6D 88.381 1248 64 24 2122 3341 346959346 346958152 0.000000e+00 1426.0
9 TraesCS6A01G270000 chr6D 93.695 571 35 1 1 571 429303247 429303816 0.000000e+00 854.0
10 TraesCS6A01G270000 chr6D 98.387 62 0 1 654 715 346961990 346961930 1.490000e-19 108.0
11 TraesCS6A01G270000 chr6D 86.170 94 13 0 2413 2506 96747893 96747800 6.930000e-18 102.0
12 TraesCS6A01G270000 chr6D 98.182 55 1 0 3738 3792 346957878 346957824 3.230000e-16 97.1
13 TraesCS6A01G270000 chr6D 86.076 79 11 0 3603 3681 318956885 318956807 6.980000e-13 86.1
14 TraesCS6A01G270000 chr6D 94.545 55 2 1 3822 3876 346957878 346957825 2.510000e-12 84.2
15 TraesCS6A01G270000 chr6D 97.500 40 0 1 3531 3570 459051525 459051563 2.530000e-07 67.6
16 TraesCS6A01G270000 chr6D 95.122 41 1 1 3534 3574 458975443 458975404 3.270000e-06 63.9
17 TraesCS6A01G270000 chr6D 100.000 28 0 0 3204 3231 363394744 363394717 7.000000e-03 52.8
18 TraesCS6A01G270000 chr4D 94.580 572 29 2 1 572 482524307 482523738 0.000000e+00 883.0
19 TraesCS6A01G270000 chr4D 100.000 33 0 0 3534 3566 70234529 70234561 1.180000e-05 62.1
20 TraesCS6A01G270000 chr2D 94.415 573 31 1 1 573 101696306 101695735 0.000000e+00 880.0
21 TraesCS6A01G270000 chr2D 93.881 572 33 2 1 571 567085139 567084569 0.000000e+00 861.0
22 TraesCS6A01G270000 chr2D 77.397 146 26 5 3365 3510 114775895 114775757 3.250000e-11 80.5
23 TraesCS6A01G270000 chr2D 93.182 44 3 0 3523 3566 75504983 75504940 9.100000e-07 65.8
24 TraesCS6A01G270000 chr3D 94.396 571 31 1 1 571 483197700 483197131 0.000000e+00 876.0
25 TraesCS6A01G270000 chr3D 93.520 571 36 1 1 571 16645458 16644889 0.000000e+00 848.0
26 TraesCS6A01G270000 chr7D 93.717 573 35 1 1 573 614642459 614643030 0.000000e+00 857.0
27 TraesCS6A01G270000 chr7D 89.781 137 14 0 3580 3716 53449155 53449291 4.030000e-40 176.0
28 TraesCS6A01G270000 chr7D 81.159 138 21 5 3374 3510 37101754 37101621 5.360000e-19 106.0
29 TraesCS6A01G270000 chr7D 81.301 123 15 6 3387 3508 13870748 13870863 4.170000e-15 93.5
30 TraesCS6A01G270000 chr2B 93.531 572 36 1 1 571 95242391 95241820 0.000000e+00 850.0
31 TraesCS6A01G270000 chr2B 100.000 35 0 0 3531 3565 413446641 413446607 9.100000e-07 65.8
32 TraesCS6A01G270000 chr2A 93.520 571 37 0 1 571 53451770 53451200 0.000000e+00 850.0
33 TraesCS6A01G270000 chr2A 95.000 40 0 2 3536 3575 609736924 609736887 1.180000e-05 62.1
34 TraesCS6A01G270000 chr3A 86.986 146 12 3 3580 3719 681559639 681559495 1.460000e-34 158.0
35 TraesCS6A01G270000 chr3A 84.348 115 15 3 3603 3716 466781431 466781543 4.140000e-20 110.0
36 TraesCS6A01G270000 chr3A 93.750 48 3 0 2254 2301 380649312 380649265 5.440000e-09 73.1
37 TraesCS6A01G270000 chr3A 85.075 67 10 0 3376 3442 497296340 497296274 7.030000e-08 69.4
38 TraesCS6A01G270000 chr3A 100.000 30 0 0 578 607 669562727 669562756 5.480000e-04 56.5
39 TraesCS6A01G270000 chr3A 100.000 29 0 0 578 606 669562694 669562722 2.000000e-03 54.7
40 TraesCS6A01G270000 chr3A 100.000 28 0 0 578 605 693557322 693557349 7.000000e-03 52.8
41 TraesCS6A01G270000 chr5D 86.726 113 13 2 3603 3714 507615411 507615522 1.480000e-24 124.0
42 TraesCS6A01G270000 chr5D 80.000 160 22 8 3198 3354 536285475 536285627 4.140000e-20 110.0
43 TraesCS6A01G270000 chr5D 78.986 138 24 5 3374 3510 478288294 478288427 5.400000e-14 89.8
44 TraesCS6A01G270000 chr1B 88.636 88 10 0 2413 2500 328127455 328127542 1.490000e-19 108.0
45 TraesCS6A01G270000 chr1B 100.000 34 0 0 3533 3566 401618957 401618990 3.270000e-06 63.9
46 TraesCS6A01G270000 chr1A 87.500 88 11 0 2413 2500 296923070 296923157 6.930000e-18 102.0
47 TraesCS6A01G270000 chr5B 78.035 173 26 10 3198 3368 676620191 676620353 8.970000e-17 99.0
48 TraesCS6A01G270000 chr4A 77.586 174 27 9 3198 3368 635782538 635782702 1.160000e-15 95.3
49 TraesCS6A01G270000 chr4A 100.000 33 0 0 3534 3566 522916977 522917009 1.180000e-05 62.1
50 TraesCS6A01G270000 chr4B 91.304 46 4 0 3388 3433 178376992 178377037 3.270000e-06 63.9
51 TraesCS6A01G270000 chr4B 100.000 29 0 0 578 606 7551603 7551631 2.000000e-03 54.7
52 TraesCS6A01G270000 chr7B 95.000 40 1 1 3535 3574 222300193 222300155 1.180000e-05 62.1
53 TraesCS6A01G270000 chr7B 85.965 57 8 0 3386 3442 291570186 291570130 1.180000e-05 62.1
54 TraesCS6A01G270000 chrUn 81.579 76 11 3 3365 3438 49987652 49987578 4.230000e-05 60.2
55 TraesCS6A01G270000 chr3B 100.000 29 0 0 577 605 666616687 666616659 2.000000e-03 54.7
56 TraesCS6A01G270000 chr3B 100.000 28 0 0 578 605 248245728 248245755 7.000000e-03 52.8
57 TraesCS6A01G270000 chr3B 100.000 28 0 0 578 605 248579801 248579828 7.000000e-03 52.8
58 TraesCS6A01G270000 chr1D 100.000 28 0 0 578 605 736719 736692 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G270000 chr6A 496467099 496471021 3922 False 2483.000 7245 93.939333 1 3923 3 chr6A.!!$F1 3922
1 TraesCS6A01G270000 chr6B 534088590 534091836 3246 False 1030.825 2702 95.187500 572 3876 4 chr6B.!!$F1 3304
2 TraesCS6A01G270000 chr6D 429303247 429303816 569 False 854.000 854 93.695000 1 571 1 chr6D.!!$F1 570
3 TraesCS6A01G270000 chr6D 346957824 346961990 4166 True 775.660 2163 94.991200 654 3876 5 chr6D.!!$R5 3222
4 TraesCS6A01G270000 chr4D 482523738 482524307 569 True 883.000 883 94.580000 1 572 1 chr4D.!!$R1 571
5 TraesCS6A01G270000 chr2D 101695735 101696306 571 True 880.000 880 94.415000 1 573 1 chr2D.!!$R2 572
6 TraesCS6A01G270000 chr2D 567084569 567085139 570 True 861.000 861 93.881000 1 571 1 chr2D.!!$R4 570
7 TraesCS6A01G270000 chr3D 483197131 483197700 569 True 876.000 876 94.396000 1 571 1 chr3D.!!$R2 570
8 TraesCS6A01G270000 chr3D 16644889 16645458 569 True 848.000 848 93.520000 1 571 1 chr3D.!!$R1 570
9 TraesCS6A01G270000 chr7D 614642459 614643030 571 False 857.000 857 93.717000 1 573 1 chr7D.!!$F3 572
10 TraesCS6A01G270000 chr2B 95241820 95242391 571 True 850.000 850 93.531000 1 571 1 chr2B.!!$R1 570
11 TraesCS6A01G270000 chr2A 53451200 53451770 570 True 850.000 850 93.520000 1 571 1 chr2A.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 976 0.469331 TCACCTCTTCACTCCACCGT 60.469 55.0 0.0 0.0 0.0 4.83 F
1798 1807 0.179081 GGGTCTTGTCGAGGGTATGC 60.179 60.0 0.0 0.0 0.0 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2734 4157 0.106519 CCCTCGAAATTGCAGGGGAT 60.107 55.0 11.4 0.0 43.12 3.85 R
3694 5233 0.035439 GCCTTGTTCGGAATCCCTCA 60.035 55.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.332683 TCTGATAGTGTTGGTAGTCCCT 57.667 45.455 0.00 0.00 0.00 4.20
66 67 4.844349 ACCCCATAAATCTCCATATCCG 57.156 45.455 0.00 0.00 0.00 4.18
141 142 2.658422 GCAACCGGTAGGGAACGA 59.342 61.111 8.00 0.00 43.47 3.85
291 292 3.882888 AGACGATGGCAAAGAAAGAACAA 59.117 39.130 0.00 0.00 0.00 2.83
344 345 9.429359 GAGAGAAAACAGATCTCAAAACAGATA 57.571 33.333 6.35 0.00 44.64 1.98
458 462 1.513373 GTATGCGCGACGAGTGTCA 60.513 57.895 12.10 0.00 45.80 3.58
484 488 0.670854 GAGCGCCTCGGAAAAGTCTT 60.671 55.000 2.29 0.00 0.00 3.01
510 514 1.737735 CTCCGCGCATGACACTTGA 60.738 57.895 8.75 0.00 0.00 3.02
516 520 2.953605 GCATGACACTTGACGCGCA 61.954 57.895 5.73 1.71 0.00 6.09
610 614 2.025793 TCCAATAGGATTCGCCCACAAA 60.026 45.455 0.00 0.00 39.61 2.83
611 615 2.099098 CCAATAGGATTCGCCCACAAAC 59.901 50.000 0.00 0.00 37.37 2.93
612 616 2.752354 CAATAGGATTCGCCCACAAACA 59.248 45.455 0.00 0.00 37.37 2.83
613 617 2.799126 TAGGATTCGCCCACAAACAT 57.201 45.000 0.00 0.00 37.37 2.71
614 618 2.799126 AGGATTCGCCCACAAACATA 57.201 45.000 0.00 0.00 37.37 2.29
615 619 2.643551 AGGATTCGCCCACAAACATAG 58.356 47.619 0.00 0.00 37.37 2.23
616 620 1.065551 GGATTCGCCCACAAACATAGC 59.934 52.381 0.00 0.00 0.00 2.97
742 746 4.555709 ACCACTCGCGCACCCAAA 62.556 61.111 8.75 0.00 0.00 3.28
743 747 3.055719 CCACTCGCGCACCCAAAT 61.056 61.111 8.75 0.00 0.00 2.32
744 748 2.480555 CACTCGCGCACCCAAATC 59.519 61.111 8.75 0.00 0.00 2.17
745 749 2.031919 ACTCGCGCACCCAAATCA 59.968 55.556 8.75 0.00 0.00 2.57
759 763 0.698818 AAATCAAAGCCCCTCCTCGT 59.301 50.000 0.00 0.00 0.00 4.18
760 764 1.580059 AATCAAAGCCCCTCCTCGTA 58.420 50.000 0.00 0.00 0.00 3.43
816 825 1.122019 AGTCCAAGTCCAGGCGAGTT 61.122 55.000 0.00 0.00 34.23 3.01
821 830 0.685097 AAGTCCAGGCGAGTTTGCTA 59.315 50.000 0.00 0.00 29.18 3.49
853 862 1.008309 GTCGCCGTCCTAGATCTGC 60.008 63.158 5.18 0.00 0.00 4.26
888 897 1.128188 ACCTTTCCTCCTCCGTTGCT 61.128 55.000 0.00 0.00 0.00 3.91
937 946 1.004394 CCTTCGCCCTCTTTAAACCCT 59.996 52.381 0.00 0.00 0.00 4.34
941 950 1.664873 GCCCTCTTTAAACCCTAGCG 58.335 55.000 0.00 0.00 0.00 4.26
967 976 0.469331 TCACCTCTTCACTCCACCGT 60.469 55.000 0.00 0.00 0.00 4.83
970 979 1.185618 CCTCTTCACTCCACCGTCCA 61.186 60.000 0.00 0.00 0.00 4.02
988 997 2.687566 CGGAACCCAGGCCCTAGT 60.688 66.667 0.00 0.00 0.00 2.57
1322 1331 4.077188 GGCAAGTGCACTCGACGC 62.077 66.667 21.95 19.17 44.36 5.19
1798 1807 0.179081 GGGTCTTGTCGAGGGTATGC 60.179 60.000 0.00 0.00 0.00 3.14
1872 1881 5.574188 ACTTATGTGGCAATCTTCTTTCCT 58.426 37.500 0.00 0.00 0.00 3.36
1936 1945 5.965922 ACATATCTGAAGATTGTGACACGA 58.034 37.500 0.00 0.00 36.05 4.35
1951 1960 7.169035 TGTGACACGAAAAACTATTGAGTAC 57.831 36.000 0.22 0.00 33.58 2.73
1979 1988 6.147328 GGTGTAGTTGAGACGCTTTTTAGATT 59.853 38.462 0.00 0.00 0.00 2.40
2005 2014 9.859427 TCTCAAAATTTCAAGCTTATGTAATGG 57.141 29.630 0.00 0.00 0.00 3.16
2033 2042 9.848172 GAAAATGTAATGCAAACAGTTTACTTG 57.152 29.630 22.75 0.00 43.01 3.16
2051 2060 4.775236 ACTTGAAGGATCATAAGACCAGC 58.225 43.478 0.00 0.00 34.96 4.85
2195 3435 1.338200 GCACTGTCCTGACGGAAGAAT 60.338 52.381 12.89 0.00 42.08 2.40
2381 3804 7.098477 TCTTATTTTGTGGCATTTCATTCTGG 58.902 34.615 0.00 0.00 0.00 3.86
2382 3805 4.952071 TTTTGTGGCATTTCATTCTGGA 57.048 36.364 0.00 0.00 0.00 3.86
2386 3809 4.858850 TGTGGCATTTCATTCTGGATAGT 58.141 39.130 0.00 0.00 0.00 2.12
2421 3844 3.695060 CACATTAGTGTCGTACTCCCTCT 59.305 47.826 0.00 0.00 40.89 3.69
2422 3845 4.880120 CACATTAGTGTCGTACTCCCTCTA 59.120 45.833 0.00 0.00 40.89 2.43
2436 3859 8.414778 CGTACTCCCTCTATTCAGAAATAAGTT 58.585 37.037 0.00 0.00 0.00 2.66
2439 3862 6.049149 TCCCTCTATTCAGAAATAAGTTGCG 58.951 40.000 0.00 0.00 0.00 4.85
2514 3937 4.837093 ACGGAGGGAATATTCAGTTCAA 57.163 40.909 17.07 0.00 0.00 2.69
2708 4131 5.118990 TGATGTTGCTATGAAGGCTCTAAC 58.881 41.667 0.00 0.00 0.00 2.34
2734 4157 5.833131 GGCATCAAATCTGGGAGGTTTATTA 59.167 40.000 0.00 0.00 0.00 0.98
2957 4385 2.432146 GGATTCCCAGATTTTCAAGGGC 59.568 50.000 0.00 0.00 41.22 5.19
2958 4386 2.999185 TTCCCAGATTTTCAAGGGCT 57.001 45.000 0.00 0.00 41.22 5.19
2960 4388 4.396357 TTCCCAGATTTTCAAGGGCTTA 57.604 40.909 0.00 0.00 41.22 3.09
2961 4389 3.697166 TCCCAGATTTTCAAGGGCTTAC 58.303 45.455 0.00 0.00 41.22 2.34
2962 4390 3.075283 TCCCAGATTTTCAAGGGCTTACA 59.925 43.478 0.00 0.00 41.22 2.41
2963 4391 3.831911 CCCAGATTTTCAAGGGCTTACAA 59.168 43.478 0.00 0.00 33.91 2.41
2964 4392 4.467438 CCCAGATTTTCAAGGGCTTACAAT 59.533 41.667 0.00 0.00 33.91 2.71
2965 4393 5.046376 CCCAGATTTTCAAGGGCTTACAATT 60.046 40.000 0.00 0.00 33.91 2.32
2966 4394 6.466812 CCAGATTTTCAAGGGCTTACAATTT 58.533 36.000 0.00 0.00 0.00 1.82
2967 4395 7.310361 CCCAGATTTTCAAGGGCTTACAATTTA 60.310 37.037 0.00 0.00 33.91 1.40
3017 4445 3.909995 CCCTGGACTGAATGTATATCCCA 59.090 47.826 0.00 0.00 0.00 4.37
3018 4446 4.263068 CCCTGGACTGAATGTATATCCCAC 60.263 50.000 0.00 0.00 0.00 4.61
3054 4485 9.396022 GGGATACAATGTATATCTGGGTTATTG 57.604 37.037 5.81 0.00 39.74 1.90
3066 4497 5.205056 TCTGGGTTATTGTTTTTGACCAGT 58.795 37.500 0.00 0.00 43.50 4.00
3199 4630 7.842743 TGTACTAGGTAGAGGAACAAATATGGT 59.157 37.037 0.00 0.00 0.00 3.55
3200 4631 7.750947 ACTAGGTAGAGGAACAAATATGGTT 57.249 36.000 0.00 0.00 0.00 3.67
3223 4654 3.062466 GTTTTGGCTCCCGGGCTC 61.062 66.667 18.49 9.71 41.48 4.70
3224 4655 3.575247 TTTTGGCTCCCGGGCTCA 61.575 61.111 18.49 11.07 41.48 4.26
3225 4656 3.140073 TTTTGGCTCCCGGGCTCAA 62.140 57.895 18.49 16.71 41.48 3.02
3226 4657 2.648613 TTTTGGCTCCCGGGCTCAAA 62.649 55.000 18.49 21.39 41.48 2.69
3227 4658 2.439553 TTTGGCTCCCGGGCTCAAAT 62.440 55.000 18.49 0.00 41.48 2.32
3242 4673 0.745845 CAAATGAGCCCGGGAGTGAG 60.746 60.000 29.31 2.61 0.00 3.51
3319 4751 2.027745 TGGAGAAAGATGACTGAGTGCC 60.028 50.000 0.00 0.00 0.00 5.01
3326 4758 3.369175 AGATGACTGAGTGCCTGATGTA 58.631 45.455 0.00 0.00 0.00 2.29
3334 4766 1.019673 GTGCCTGATGTATGTGCCAG 58.980 55.000 0.00 0.00 0.00 4.85
3355 4794 6.678878 CCAGATTTCAGAGCATTTGGATATG 58.321 40.000 0.00 0.00 27.90 1.78
3357 4796 7.446319 CCAGATTTCAGAGCATTTGGATATGTA 59.554 37.037 0.00 0.00 27.90 2.29
3367 4881 8.292444 AGCATTTGGATATGTAAGTTGCTTTA 57.708 30.769 0.00 0.00 0.00 1.85
3390 4904 2.698855 TTTGAGAGCTACCTGGATGC 57.301 50.000 0.00 3.99 0.00 3.91
3402 4916 1.406341 CCTGGATGCCCAAATGCTTTG 60.406 52.381 0.00 2.70 42.98 2.77
3414 4928 4.212911 CAAATGCTTTGAAATTTGGCACG 58.787 39.130 0.00 0.00 43.26 5.34
3418 4932 1.526464 CTTTGAAATTTGGCACGCACC 59.474 47.619 0.00 0.00 0.00 5.01
3420 4934 1.610363 TGAAATTTGGCACGCACCTA 58.390 45.000 0.00 0.00 0.00 3.08
3422 4936 2.560542 TGAAATTTGGCACGCACCTAAT 59.439 40.909 0.00 0.00 36.83 1.73
3442 4956 6.533723 CCTAATGCACTCAAACGTCTTACATA 59.466 38.462 0.00 0.00 0.00 2.29
3443 4957 6.795098 AATGCACTCAAACGTCTTACATAA 57.205 33.333 0.00 0.00 0.00 1.90
3446 4960 6.423862 TGCACTCAAACGTCTTACATAAAAC 58.576 36.000 0.00 0.00 0.00 2.43
3448 4962 6.573725 GCACTCAAACGTCTTACATAAAACAG 59.426 38.462 0.00 0.00 0.00 3.16
3451 4965 9.052759 ACTCAAACGTCTTACATAAAACAGAAT 57.947 29.630 0.00 0.00 0.00 2.40
3453 4967 9.872757 TCAAACGTCTTACATAAAACAGAATTC 57.127 29.630 0.00 0.00 0.00 2.17
3454 4968 9.658475 CAAACGTCTTACATAAAACAGAATTCA 57.342 29.630 8.44 0.00 0.00 2.57
3456 4970 8.827177 ACGTCTTACATAAAACAGAATTCAGA 57.173 30.769 8.44 0.00 0.00 3.27
3457 4971 9.436957 ACGTCTTACATAAAACAGAATTCAGAT 57.563 29.630 8.44 0.00 0.00 2.90
3515 5054 0.951558 GTTCACCAGGTGCAATTCGT 59.048 50.000 15.64 0.00 32.98 3.85
3527 5066 8.946085 CCAGGTGCAATTCGTACAAATATATAT 58.054 33.333 0.00 0.00 30.59 0.86
3555 5094 8.639761 GCTACCTCTGTTCCTAAATATAAGACA 58.360 37.037 0.00 0.00 0.00 3.41
3566 5105 9.120538 TCCTAAATATAAGACATTTTGGCAGTC 57.879 33.333 0.00 0.00 37.84 3.51
3567 5106 9.125026 CCTAAATATAAGACATTTTGGCAGTCT 57.875 33.333 1.61 1.61 43.98 3.24
3577 5116 9.686683 AGACATTTTGGCAGTCTTATATTTACT 57.313 29.630 1.61 0.00 39.45 2.24
3580 5119 9.438291 CATTTTGGCAGTCTTATATTTACTTCG 57.562 33.333 0.00 0.00 0.00 3.79
3581 5120 6.598753 TTGGCAGTCTTATATTTACTTCGC 57.401 37.500 0.00 0.00 0.00 4.70
3582 5121 4.743151 TGGCAGTCTTATATTTACTTCGCG 59.257 41.667 0.00 0.00 0.00 5.87
3583 5122 4.743644 GGCAGTCTTATATTTACTTCGCGT 59.256 41.667 5.77 0.00 0.00 6.01
3584 5123 5.107951 GGCAGTCTTATATTTACTTCGCGTC 60.108 44.000 5.77 0.00 0.00 5.19
3585 5124 5.107951 GCAGTCTTATATTTACTTCGCGTCC 60.108 44.000 5.77 0.00 0.00 4.79
3586 5125 5.115171 CAGTCTTATATTTACTTCGCGTCCG 59.885 44.000 5.77 0.00 0.00 4.79
3587 5126 4.380974 GTCTTATATTTACTTCGCGTCCGG 59.619 45.833 5.77 0.00 34.56 5.14
3588 5127 1.494824 ATATTTACTTCGCGTCCGGC 58.505 50.000 5.77 0.00 38.69 6.13
3589 5128 0.457035 TATTTACTTCGCGTCCGGCT 59.543 50.000 5.77 0.00 40.44 5.52
3590 5129 0.804933 ATTTACTTCGCGTCCGGCTC 60.805 55.000 5.77 0.00 40.44 4.70
3591 5130 2.824071 TTTACTTCGCGTCCGGCTCC 62.824 60.000 5.77 0.00 40.44 4.70
3593 5132 4.856607 CTTCGCGTCCGGCTCCTC 62.857 72.222 5.77 0.00 40.44 3.71
3603 5142 4.851214 GGCTCCTCTCCGCTCCCT 62.851 72.222 0.00 0.00 0.00 4.20
3604 5143 3.223589 GCTCCTCTCCGCTCCCTC 61.224 72.222 0.00 0.00 0.00 4.30
3605 5144 2.520741 CTCCTCTCCGCTCCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
3606 5145 3.347590 TCCTCTCCGCTCCCTCCA 61.348 66.667 0.00 0.00 0.00 3.86
3607 5146 3.151022 CCTCTCCGCTCCCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
3608 5147 2.043450 CTCTCCGCTCCCTCCACT 60.043 66.667 0.00 0.00 0.00 4.00
3609 5148 2.043852 TCTCCGCTCCCTCCACTC 60.044 66.667 0.00 0.00 0.00 3.51
3610 5149 3.151022 CTCCGCTCCCTCCACTCC 61.151 72.222 0.00 0.00 0.00 3.85
3614 5153 3.462678 GCTCCCTCCACTCCGGTC 61.463 72.222 0.00 0.00 35.57 4.79
3615 5154 2.760385 CTCCCTCCACTCCGGTCC 60.760 72.222 0.00 0.00 35.57 4.46
3616 5155 4.753662 TCCCTCCACTCCGGTCCG 62.754 72.222 3.60 3.60 35.57 4.79
3635 5174 3.151022 AGCGGACCAGGCTCTAGC 61.151 66.667 0.00 0.00 35.37 3.42
3636 5175 3.151022 GCGGACCAGGCTCTAGCT 61.151 66.667 1.39 0.00 41.70 3.32
3637 5176 3.124686 CGGACCAGGCTCTAGCTC 58.875 66.667 1.39 0.00 41.70 4.09
3638 5177 1.754621 CGGACCAGGCTCTAGCTCA 60.755 63.158 1.39 0.00 41.70 4.26
3639 5178 1.112315 CGGACCAGGCTCTAGCTCAT 61.112 60.000 1.39 0.00 41.70 2.90
3640 5179 1.127343 GGACCAGGCTCTAGCTCATT 58.873 55.000 1.39 0.00 41.70 2.57
3641 5180 1.488393 GGACCAGGCTCTAGCTCATTT 59.512 52.381 1.39 0.00 41.70 2.32
3642 5181 2.092699 GGACCAGGCTCTAGCTCATTTT 60.093 50.000 1.39 0.00 41.70 1.82
3643 5182 3.202097 GACCAGGCTCTAGCTCATTTTC 58.798 50.000 1.39 0.00 41.70 2.29
3644 5183 2.573462 ACCAGGCTCTAGCTCATTTTCA 59.427 45.455 1.39 0.00 41.70 2.69
3645 5184 2.941720 CCAGGCTCTAGCTCATTTTCAC 59.058 50.000 1.39 0.00 41.70 3.18
3646 5185 3.603532 CAGGCTCTAGCTCATTTTCACA 58.396 45.455 1.39 0.00 41.70 3.58
3647 5186 3.622163 CAGGCTCTAGCTCATTTTCACAG 59.378 47.826 1.39 0.00 41.70 3.66
3648 5187 3.517100 AGGCTCTAGCTCATTTTCACAGA 59.483 43.478 1.39 0.00 41.70 3.41
3649 5188 3.620821 GGCTCTAGCTCATTTTCACAGAC 59.379 47.826 1.39 0.00 41.70 3.51
3650 5189 3.305629 GCTCTAGCTCATTTTCACAGACG 59.694 47.826 0.00 0.00 38.21 4.18
3651 5190 4.489810 CTCTAGCTCATTTTCACAGACGT 58.510 43.478 0.00 0.00 0.00 4.34
3652 5191 4.883083 TCTAGCTCATTTTCACAGACGTT 58.117 39.130 0.00 0.00 0.00 3.99
3653 5192 5.297547 TCTAGCTCATTTTCACAGACGTTT 58.702 37.500 0.00 0.00 0.00 3.60
3654 5193 4.900635 AGCTCATTTTCACAGACGTTTT 57.099 36.364 0.00 0.00 0.00 2.43
3655 5194 4.601019 AGCTCATTTTCACAGACGTTTTG 58.399 39.130 0.00 0.00 0.00 2.44
3656 5195 3.730715 GCTCATTTTCACAGACGTTTTGG 59.269 43.478 0.00 0.00 0.00 3.28
3657 5196 3.701241 TCATTTTCACAGACGTTTTGGC 58.299 40.909 0.00 0.00 0.00 4.52
3658 5197 3.129462 TCATTTTCACAGACGTTTTGGCA 59.871 39.130 0.00 0.00 0.00 4.92
3659 5198 2.842208 TTTCACAGACGTTTTGGCAG 57.158 45.000 0.00 0.00 0.00 4.85
3660 5199 1.745232 TTCACAGACGTTTTGGCAGT 58.255 45.000 0.00 0.00 0.00 4.40
3661 5200 1.013596 TCACAGACGTTTTGGCAGTG 58.986 50.000 0.00 0.00 0.00 3.66
3662 5201 1.013596 CACAGACGTTTTGGCAGTGA 58.986 50.000 0.00 0.00 0.00 3.41
3663 5202 1.003545 CACAGACGTTTTGGCAGTGAG 60.004 52.381 0.00 0.00 0.00 3.51
3664 5203 0.040958 CAGACGTTTTGGCAGTGAGC 60.041 55.000 0.00 0.00 44.65 4.26
3665 5204 0.179045 AGACGTTTTGGCAGTGAGCT 60.179 50.000 0.00 0.00 44.79 4.09
3666 5205 0.235926 GACGTTTTGGCAGTGAGCTC 59.764 55.000 6.82 6.82 44.79 4.09
3667 5206 1.166531 ACGTTTTGGCAGTGAGCTCC 61.167 55.000 12.15 2.40 44.79 4.70
3668 5207 1.165907 CGTTTTGGCAGTGAGCTCCA 61.166 55.000 12.15 0.00 44.79 3.86
3669 5208 0.312102 GTTTTGGCAGTGAGCTCCAC 59.688 55.000 12.15 9.60 46.03 4.02
3676 5215 4.268687 GTGAGCTCCACAACTCCG 57.731 61.111 12.15 0.00 45.03 4.63
3677 5216 1.367840 GTGAGCTCCACAACTCCGT 59.632 57.895 12.15 0.00 45.03 4.69
3678 5217 0.946221 GTGAGCTCCACAACTCCGTG 60.946 60.000 12.15 0.00 45.03 4.94
3689 5228 3.686760 CTCCGTGGAGTCAGAGCA 58.313 61.111 7.79 0.00 37.47 4.26
3690 5229 1.510383 CTCCGTGGAGTCAGAGCAG 59.490 63.158 7.79 0.00 37.47 4.24
3691 5230 0.962855 CTCCGTGGAGTCAGAGCAGA 60.963 60.000 7.79 0.00 37.47 4.26
3692 5231 0.962855 TCCGTGGAGTCAGAGCAGAG 60.963 60.000 0.00 0.00 0.00 3.35
3693 5232 0.962855 CCGTGGAGTCAGAGCAGAGA 60.963 60.000 0.00 0.00 0.00 3.10
3694 5233 1.102154 CGTGGAGTCAGAGCAGAGAT 58.898 55.000 0.00 0.00 0.00 2.75
3695 5234 1.202279 CGTGGAGTCAGAGCAGAGATG 60.202 57.143 0.00 0.00 0.00 2.90
3696 5235 2.098614 GTGGAGTCAGAGCAGAGATGA 58.901 52.381 0.00 0.00 0.00 2.92
3697 5236 2.099592 GTGGAGTCAGAGCAGAGATGAG 59.900 54.545 0.00 0.00 0.00 2.90
3698 5237 1.682854 GGAGTCAGAGCAGAGATGAGG 59.317 57.143 0.00 0.00 0.00 3.86
3699 5238 1.682854 GAGTCAGAGCAGAGATGAGGG 59.317 57.143 0.00 0.00 0.00 4.30
3700 5239 1.287442 AGTCAGAGCAGAGATGAGGGA 59.713 52.381 0.00 0.00 0.00 4.20
3701 5240 2.091166 AGTCAGAGCAGAGATGAGGGAT 60.091 50.000 0.00 0.00 0.00 3.85
3702 5241 2.699846 GTCAGAGCAGAGATGAGGGATT 59.300 50.000 0.00 0.00 0.00 3.01
3703 5242 2.964464 TCAGAGCAGAGATGAGGGATTC 59.036 50.000 0.00 0.00 0.00 2.52
3704 5243 2.037511 CAGAGCAGAGATGAGGGATTCC 59.962 54.545 0.00 0.00 0.00 3.01
3705 5244 1.000731 GAGCAGAGATGAGGGATTCCG 59.999 57.143 0.00 0.00 38.33 4.30
3706 5245 1.043816 GCAGAGATGAGGGATTCCGA 58.956 55.000 0.00 0.00 38.33 4.55
3707 5246 1.414181 GCAGAGATGAGGGATTCCGAA 59.586 52.381 0.00 0.00 38.33 4.30
3708 5247 2.804933 GCAGAGATGAGGGATTCCGAAC 60.805 54.545 0.00 0.00 38.33 3.95
3709 5248 2.432146 CAGAGATGAGGGATTCCGAACA 59.568 50.000 0.00 0.00 38.33 3.18
3710 5249 3.107601 AGAGATGAGGGATTCCGAACAA 58.892 45.455 0.00 0.00 38.33 2.83
3711 5250 3.133721 AGAGATGAGGGATTCCGAACAAG 59.866 47.826 0.00 0.00 38.33 3.16
3712 5251 2.171448 AGATGAGGGATTCCGAACAAGG 59.829 50.000 0.00 0.00 38.33 3.61
3713 5252 0.035439 TGAGGGATTCCGAACAAGGC 60.035 55.000 0.00 0.00 38.33 4.35
3714 5253 0.748367 GAGGGATTCCGAACAAGGCC 60.748 60.000 0.00 0.00 38.33 5.19
3715 5254 1.208165 AGGGATTCCGAACAAGGCCT 61.208 55.000 0.00 0.00 38.33 5.19
3716 5255 0.323451 GGGATTCCGAACAAGGCCTT 60.323 55.000 13.78 13.78 0.00 4.35
3717 5256 1.064979 GGGATTCCGAACAAGGCCTTA 60.065 52.381 20.00 0.00 0.00 2.69
3718 5257 2.289565 GGATTCCGAACAAGGCCTTAG 58.710 52.381 20.00 15.05 0.00 2.18
3719 5258 2.289565 GATTCCGAACAAGGCCTTAGG 58.710 52.381 20.00 18.44 0.00 2.69
3720 5259 1.354101 TTCCGAACAAGGCCTTAGGA 58.646 50.000 20.00 20.37 0.00 2.94
3721 5260 1.354101 TCCGAACAAGGCCTTAGGAA 58.646 50.000 20.00 7.02 0.00 3.36
3722 5261 1.913419 TCCGAACAAGGCCTTAGGAAT 59.087 47.619 20.00 2.29 0.00 3.01
3723 5262 3.109151 TCCGAACAAGGCCTTAGGAATA 58.891 45.455 20.00 0.00 0.00 1.75
3724 5263 3.134081 TCCGAACAAGGCCTTAGGAATAG 59.866 47.826 20.00 6.42 0.00 1.73
3725 5264 3.134081 CCGAACAAGGCCTTAGGAATAGA 59.866 47.826 20.00 0.00 0.00 1.98
3726 5265 4.372656 CGAACAAGGCCTTAGGAATAGAG 58.627 47.826 20.00 4.78 0.00 2.43
3727 5266 4.709250 GAACAAGGCCTTAGGAATAGAGG 58.291 47.826 20.00 3.96 0.00 3.69
3728 5267 3.737263 ACAAGGCCTTAGGAATAGAGGT 58.263 45.455 20.00 4.69 33.03 3.85
3729 5268 3.456277 ACAAGGCCTTAGGAATAGAGGTG 59.544 47.826 20.00 3.95 33.03 4.00
3730 5269 2.695585 AGGCCTTAGGAATAGAGGTGG 58.304 52.381 0.00 0.00 33.03 4.61
3731 5270 2.021936 AGGCCTTAGGAATAGAGGTGGT 60.022 50.000 0.00 0.00 33.03 4.16
3732 5271 3.209152 AGGCCTTAGGAATAGAGGTGGTA 59.791 47.826 0.00 0.00 33.03 3.25
3733 5272 3.579151 GGCCTTAGGAATAGAGGTGGTAG 59.421 52.174 0.69 0.00 33.03 3.18
3734 5273 4.224762 GCCTTAGGAATAGAGGTGGTAGT 58.775 47.826 0.69 0.00 33.03 2.73
3735 5274 5.392125 GCCTTAGGAATAGAGGTGGTAGTA 58.608 45.833 0.69 0.00 33.03 1.82
3736 5275 5.243507 GCCTTAGGAATAGAGGTGGTAGTAC 59.756 48.000 0.69 0.00 33.03 2.73
3783 5322 7.222872 TGGTGCCATTTCTAAATGAAAAATGT 58.777 30.769 15.37 0.00 46.72 2.71
3810 5349 8.737168 TCCACAGATGTTATTTAGAAATGGAG 57.263 34.615 0.00 0.00 0.00 3.86
3811 5350 7.775093 TCCACAGATGTTATTTAGAAATGGAGG 59.225 37.037 0.00 0.00 0.00 4.30
3812 5351 7.557719 CCACAGATGTTATTTAGAAATGGAGGT 59.442 37.037 0.00 0.00 0.00 3.85
3813 5352 9.613428 CACAGATGTTATTTAGAAATGGAGGTA 57.387 33.333 0.00 0.00 0.00 3.08
3814 5353 9.838339 ACAGATGTTATTTAGAAATGGAGGTAG 57.162 33.333 0.00 0.00 0.00 3.18
3815 5354 9.838339 CAGATGTTATTTAGAAATGGAGGTAGT 57.162 33.333 0.00 0.00 0.00 2.73
3830 5369 9.742144 AATGGAGGTAGTAGTACTATGTATCAG 57.258 37.037 13.09 0.00 32.65 2.90
3831 5370 8.272659 TGGAGGTAGTAGTACTATGTATCAGT 57.727 38.462 13.09 0.00 32.65 3.41
3832 5371 8.155510 TGGAGGTAGTAGTACTATGTATCAGTG 58.844 40.741 13.09 0.00 32.65 3.66
3833 5372 7.119553 GGAGGTAGTAGTACTATGTATCAGTGC 59.880 44.444 13.09 0.00 32.65 4.40
3834 5373 6.941436 AGGTAGTAGTACTATGTATCAGTGCC 59.059 42.308 13.09 5.88 32.65 5.01
3835 5374 6.713903 GGTAGTAGTACTATGTATCAGTGCCA 59.286 42.308 13.09 0.00 32.65 4.92
3836 5375 7.230108 GGTAGTAGTACTATGTATCAGTGCCAA 59.770 40.741 13.09 0.00 32.65 4.52
3837 5376 7.040473 AGTAGTACTATGTATCAGTGCCAAC 57.960 40.000 5.75 0.00 29.78 3.77
3838 5377 6.834451 AGTAGTACTATGTATCAGTGCCAACT 59.166 38.462 5.75 0.00 36.98 3.16
3839 5378 6.546428 AGTACTATGTATCAGTGCCAACTT 57.454 37.500 0.00 0.00 32.98 2.66
3840 5379 6.947464 AGTACTATGTATCAGTGCCAACTTT 58.053 36.000 0.00 0.00 32.98 2.66
3841 5380 7.042335 AGTACTATGTATCAGTGCCAACTTTC 58.958 38.462 0.00 0.00 32.98 2.62
3842 5381 6.054860 ACTATGTATCAGTGCCAACTTTCT 57.945 37.500 0.00 0.00 32.98 2.52
3843 5382 5.877012 ACTATGTATCAGTGCCAACTTTCTG 59.123 40.000 0.00 0.00 32.98 3.02
3844 5383 3.411446 TGTATCAGTGCCAACTTTCTGG 58.589 45.455 0.00 0.00 39.71 3.86
3845 5384 2.664402 ATCAGTGCCAACTTTCTGGT 57.336 45.000 0.00 0.00 38.86 4.00
3846 5385 1.679139 TCAGTGCCAACTTTCTGGTG 58.321 50.000 0.00 0.00 38.86 4.17
3847 5386 0.031178 CAGTGCCAACTTTCTGGTGC 59.969 55.000 0.00 0.00 38.86 5.01
3848 5387 1.109323 AGTGCCAACTTTCTGGTGCC 61.109 55.000 0.00 0.00 38.86 5.01
3849 5388 1.076412 TGCCAACTTTCTGGTGCCA 60.076 52.632 0.00 0.00 38.86 4.92
3850 5389 0.469705 TGCCAACTTTCTGGTGCCAT 60.470 50.000 0.00 0.00 38.86 4.40
3851 5390 0.681175 GCCAACTTTCTGGTGCCATT 59.319 50.000 0.00 0.00 38.86 3.16
3852 5391 1.070601 GCCAACTTTCTGGTGCCATTT 59.929 47.619 0.00 0.00 38.86 2.32
3853 5392 2.867647 GCCAACTTTCTGGTGCCATTTC 60.868 50.000 0.00 0.00 38.86 2.17
3854 5393 2.629617 CCAACTTTCTGGTGCCATTTCT 59.370 45.455 0.00 0.00 30.42 2.52
3855 5394 3.826157 CCAACTTTCTGGTGCCATTTCTA 59.174 43.478 0.00 0.00 30.42 2.10
3856 5395 4.280677 CCAACTTTCTGGTGCCATTTCTAA 59.719 41.667 0.00 0.00 30.42 2.10
3857 5396 5.221422 CCAACTTTCTGGTGCCATTTCTAAA 60.221 40.000 0.00 0.00 30.42 1.85
3858 5397 6.458210 CAACTTTCTGGTGCCATTTCTAAAT 58.542 36.000 0.00 0.00 0.00 1.40
3859 5398 6.029346 ACTTTCTGGTGCCATTTCTAAATG 57.971 37.500 8.21 8.21 44.12 2.32
3860 5399 5.774690 ACTTTCTGGTGCCATTTCTAAATGA 59.225 36.000 15.37 0.00 46.72 2.57
3861 5400 6.267471 ACTTTCTGGTGCCATTTCTAAATGAA 59.733 34.615 15.37 2.70 46.72 2.57
3862 5401 6.662865 TTCTGGTGCCATTTCTAAATGAAA 57.337 33.333 15.37 2.40 46.72 2.69
3863 5402 6.662865 TCTGGTGCCATTTCTAAATGAAAA 57.337 33.333 15.37 0.26 46.72 2.29
3864 5403 7.060383 TCTGGTGCCATTTCTAAATGAAAAA 57.940 32.000 15.37 0.00 46.72 1.94
3865 5404 7.678837 TCTGGTGCCATTTCTAAATGAAAAAT 58.321 30.769 15.37 0.00 46.72 1.82
3866 5405 8.156165 TCTGGTGCCATTTCTAAATGAAAAATT 58.844 29.630 15.37 0.00 46.72 1.82
3867 5406 8.097078 TGGTGCCATTTCTAAATGAAAAATTG 57.903 30.769 15.37 0.51 46.72 2.32
3868 5407 7.022979 GGTGCCATTTCTAAATGAAAAATTGC 58.977 34.615 15.37 9.39 46.72 3.56
3869 5408 7.308469 GGTGCCATTTCTAAATGAAAAATTGCA 60.308 33.333 15.37 11.42 46.72 4.08
3870 5409 8.238631 GTGCCATTTCTAAATGAAAAATTGCAT 58.761 29.630 15.37 0.00 46.72 3.96
3871 5410 8.452534 TGCCATTTCTAAATGAAAAATTGCATC 58.547 29.630 15.37 0.00 46.72 3.91
3872 5411 7.911727 GCCATTTCTAAATGAAAAATTGCATCC 59.088 33.333 15.37 0.00 46.72 3.51
3873 5412 8.948145 CCATTTCTAAATGAAAAATTGCATCCA 58.052 29.630 15.37 0.00 46.72 3.41
3874 5413 9.763465 CATTTCTAAATGAAAAATTGCATCCAC 57.237 29.630 9.37 0.00 46.72 4.02
3875 5414 8.899427 TTTCTAAATGAAAAATTGCATCCACA 57.101 26.923 0.00 0.00 41.23 4.17
3876 5415 9.504708 TTTCTAAATGAAAAATTGCATCCACAT 57.495 25.926 0.00 0.00 41.23 3.21
3877 5416 8.706492 TCTAAATGAAAAATTGCATCCACATC 57.294 30.769 0.00 0.00 0.00 3.06
3878 5417 6.411630 AAATGAAAAATTGCATCCACATCG 57.588 33.333 0.00 0.00 0.00 3.84
3879 5418 4.780275 TGAAAAATTGCATCCACATCGA 57.220 36.364 0.00 0.00 0.00 3.59
3880 5419 5.327616 TGAAAAATTGCATCCACATCGAT 57.672 34.783 0.00 0.00 0.00 3.59
3881 5420 5.103687 TGAAAAATTGCATCCACATCGATG 58.896 37.500 23.68 23.68 42.20 3.84
3882 5421 3.720949 AAATTGCATCCACATCGATGG 57.279 42.857 28.09 14.43 40.08 3.51
3883 5422 2.353357 ATTGCATCCACATCGATGGT 57.647 45.000 28.09 11.93 40.08 3.55
3884 5423 1.667236 TTGCATCCACATCGATGGTC 58.333 50.000 28.09 11.07 40.08 4.02
3885 5424 0.832626 TGCATCCACATCGATGGTCT 59.167 50.000 28.09 5.74 40.08 3.85
3886 5425 1.210234 TGCATCCACATCGATGGTCTT 59.790 47.619 28.09 5.36 40.08 3.01
3887 5426 1.869767 GCATCCACATCGATGGTCTTC 59.130 52.381 28.09 9.70 40.08 2.87
3888 5427 2.130395 CATCCACATCGATGGTCTTCG 58.870 52.381 28.09 9.13 40.95 3.79
3889 5428 0.459899 TCCACATCGATGGTCTTCGG 59.540 55.000 28.09 17.19 40.95 4.30
3890 5429 0.530650 CCACATCGATGGTCTTCGGG 60.531 60.000 28.09 13.55 39.56 5.14
3891 5430 1.144057 ACATCGATGGTCTTCGGGC 59.856 57.895 28.09 0.00 39.56 6.13
3892 5431 1.595382 CATCGATGGTCTTCGGGCC 60.595 63.158 17.96 0.00 39.56 5.80
3897 5436 2.609299 TGGTCTTCGGGCCATGGA 60.609 61.111 18.40 0.00 45.92 3.41
3898 5437 2.190578 GGTCTTCGGGCCATGGAG 59.809 66.667 18.40 3.03 40.02 3.86
3899 5438 2.190578 GTCTTCGGGCCATGGAGG 59.809 66.667 18.40 3.03 41.84 4.30
3900 5439 2.285368 TCTTCGGGCCATGGAGGT 60.285 61.111 18.40 0.00 40.61 3.85
3901 5440 2.124570 CTTCGGGCCATGGAGGTG 60.125 66.667 18.40 1.19 40.61 4.00
3902 5441 2.609299 TTCGGGCCATGGAGGTGA 60.609 61.111 18.40 3.95 40.61 4.02
3903 5442 2.599645 CTTCGGGCCATGGAGGTGAG 62.600 65.000 18.40 3.08 40.61 3.51
3904 5443 4.181010 CGGGCCATGGAGGTGAGG 62.181 72.222 18.40 0.00 40.61 3.86
3905 5444 2.692368 GGGCCATGGAGGTGAGGA 60.692 66.667 18.40 0.00 40.61 3.71
3906 5445 2.750657 GGGCCATGGAGGTGAGGAG 61.751 68.421 18.40 0.00 40.61 3.69
3907 5446 2.191641 GCCATGGAGGTGAGGAGC 59.808 66.667 18.40 0.00 40.61 4.70
3908 5447 2.673200 GCCATGGAGGTGAGGAGCA 61.673 63.158 18.40 0.00 40.61 4.26
3909 5448 1.222936 CCATGGAGGTGAGGAGCAC 59.777 63.158 5.56 0.00 46.98 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.466819 AGATTTATGGGGTAGTTACGGGTA 58.533 41.667 0.00 0.00 0.00 3.69
66 67 8.977412 TCTCTTTTTGTTCCCATTATATTTCCC 58.023 33.333 0.00 0.00 0.00 3.97
141 142 2.202878 CCCCATTCGCGTGATCGT 60.203 61.111 5.77 0.00 39.49 3.73
291 292 2.126071 CGAACCGTCGTGGAGCAT 60.126 61.111 3.47 0.00 42.53 3.79
550 554 4.770795 CCCGAAATCACTAATTGAGGAGT 58.229 43.478 0.00 0.00 37.77 3.85
713 717 2.852075 AGTGGTGGGAAGGCCGAA 60.852 61.111 0.00 0.00 33.83 4.30
714 718 3.319198 GAGTGGTGGGAAGGCCGA 61.319 66.667 0.00 0.00 33.83 5.54
742 746 1.694696 GATACGAGGAGGGGCTTTGAT 59.305 52.381 0.00 0.00 0.00 2.57
743 747 1.120530 GATACGAGGAGGGGCTTTGA 58.879 55.000 0.00 0.00 0.00 2.69
744 748 0.106894 GGATACGAGGAGGGGCTTTG 59.893 60.000 0.00 0.00 0.00 2.77
745 749 2.529312 GGATACGAGGAGGGGCTTT 58.471 57.895 0.00 0.00 0.00 3.51
759 763 2.865308 CCTCGCGCGTATCGGATA 59.135 61.111 30.98 6.53 38.94 2.59
760 764 4.702081 GCCTCGCGCGTATCGGAT 62.702 66.667 30.98 0.00 38.94 4.18
816 825 0.109272 CCGTCGAGACAAGCTAGCAA 60.109 55.000 18.83 0.00 0.00 3.91
821 830 2.561885 CGACCGTCGAGACAAGCT 59.438 61.111 16.03 0.00 43.74 3.74
937 946 1.137086 GAAGAGGTGATTGAGGCGCTA 59.863 52.381 7.64 0.00 0.00 4.26
941 950 2.626840 GAGTGAAGAGGTGATTGAGGC 58.373 52.381 0.00 0.00 0.00 4.70
970 979 2.687566 CTAGGGCCTGGGTTCCGT 60.688 66.667 18.53 0.00 0.00 4.69
973 982 2.272471 GCACTAGGGCCTGGGTTC 59.728 66.667 21.86 8.46 0.00 3.62
976 985 4.162690 GTCGCACTAGGGCCTGGG 62.163 72.222 21.86 13.74 0.00 4.45
1369 1378 2.511145 CTTCTCCAGCTCCTGCGC 60.511 66.667 0.00 0.00 45.42 6.09
1743 1752 0.526524 GAGGGAAGATCAGCGACACG 60.527 60.000 0.00 0.00 0.00 4.49
1856 1865 3.831323 TCAACAGGAAAGAAGATTGCCA 58.169 40.909 0.00 0.00 0.00 4.92
1917 1926 6.260936 AGTTTTTCGTGTCACAATCTTCAGAT 59.739 34.615 3.42 0.00 36.07 2.90
1936 1945 9.623000 AACTACACCAAGTACTCAATAGTTTTT 57.377 29.630 0.00 0.00 37.15 1.94
1951 1960 2.440539 AGCGTCTCAACTACACCAAG 57.559 50.000 0.00 0.00 0.00 3.61
1979 1988 9.859427 CCATTACATAAGCTTGAAATTTTGAGA 57.141 29.630 9.86 0.00 0.00 3.27
2002 2011 6.523840 ACTGTTTGCATTACATTTTCACCAT 58.476 32.000 3.00 0.00 0.00 3.55
2005 2014 9.030301 AGTAAACTGTTTGCATTACATTTTCAC 57.970 29.630 20.67 13.34 32.73 3.18
2033 2042 4.142609 TGTGCTGGTCTTATGATCCTTC 57.857 45.455 0.00 0.00 0.00 3.46
2051 2060 5.768317 ACTAATCAAATGGTTTCGGTTGTG 58.232 37.500 0.00 0.00 0.00 3.33
2285 3528 6.435277 CCCACCCATTTTCTCCTATCAATATG 59.565 42.308 0.00 0.00 0.00 1.78
2381 3804 2.103094 TGTGCATAGCTGGTCCACTATC 59.897 50.000 0.00 7.14 0.00 2.08
2382 3805 2.118679 TGTGCATAGCTGGTCCACTAT 58.881 47.619 0.00 7.70 0.00 2.12
2386 3809 2.505407 ACTAATGTGCATAGCTGGTCCA 59.495 45.455 0.00 0.00 0.00 4.02
2410 3833 7.942990 ACTTATTTCTGAATAGAGGGAGTACG 58.057 38.462 0.00 0.00 33.70 3.67
2421 3844 6.811253 AACCACGCAACTTATTTCTGAATA 57.189 33.333 0.00 0.00 0.00 1.75
2422 3845 5.705609 AACCACGCAACTTATTTCTGAAT 57.294 34.783 0.00 0.00 0.00 2.57
2436 3859 4.156190 TGAACTTTGAACTAAAACCACGCA 59.844 37.500 0.00 0.00 0.00 5.24
2439 3862 9.753669 CAAATTTGAACTTTGAACTAAAACCAC 57.246 29.630 13.08 0.00 35.99 4.16
2514 3937 8.450578 TTGAGAGTAAAGTGTGAAATGAATGT 57.549 30.769 0.00 0.00 0.00 2.71
2559 3982 7.607607 TGCTTCAGTTTCACTGTATGAATATGT 59.392 33.333 3.87 0.00 46.80 2.29
2708 4131 0.820891 CCTCCCAGATTTGATGCCGG 60.821 60.000 0.00 0.00 0.00 6.13
2734 4157 0.106519 CCCTCGAAATTGCAGGGGAT 60.107 55.000 11.40 0.00 43.12 3.85
2897 4320 2.053627 CATGTTTCTTGTTCTTGGCGC 58.946 47.619 0.00 0.00 0.00 6.53
2953 4381 9.654919 ATTGGTTGTATATAAATTGTAAGCCCT 57.345 29.630 0.00 0.00 0.00 5.19
2987 4415 4.848357 ACATTCAGTCCAGGGATAACAAG 58.152 43.478 0.00 0.00 0.00 3.16
3054 4485 7.013529 CGTGCTAAGTATAACTGGTCAAAAAC 58.986 38.462 0.00 0.00 0.00 2.43
3066 4497 7.147312 ACAAGTGTACAACGTGCTAAGTATAA 58.853 34.615 0.00 0.00 41.47 0.98
3102 4533 6.018016 CACAGGCAAAAGGGAATTTTTAACTG 60.018 38.462 10.28 10.28 39.11 3.16
3113 4544 4.898861 AGATTAAAACACAGGCAAAAGGGA 59.101 37.500 0.00 0.00 0.00 4.20
3199 4630 1.901464 GGGAGCCAAAACGCCTCAA 60.901 57.895 0.00 0.00 0.00 3.02
3200 4631 2.282180 GGGAGCCAAAACGCCTCA 60.282 61.111 0.00 0.00 0.00 3.86
3223 4654 0.745845 CTCACTCCCGGGCTCATTTG 60.746 60.000 18.49 6.05 0.00 2.32
3224 4655 1.604378 CTCACTCCCGGGCTCATTT 59.396 57.895 18.49 0.00 0.00 2.32
3225 4656 3.036429 GCTCACTCCCGGGCTCATT 62.036 63.158 18.49 0.00 0.00 2.57
3226 4657 3.474570 GCTCACTCCCGGGCTCAT 61.475 66.667 18.49 0.00 0.00 2.90
3293 4725 3.993081 CTCAGTCATCTTTCTCCACACAC 59.007 47.826 0.00 0.00 0.00 3.82
3295 4727 3.993081 CACTCAGTCATCTTTCTCCACAC 59.007 47.826 0.00 0.00 0.00 3.82
3319 4751 5.121105 TCTGAAATCTGGCACATACATCAG 58.879 41.667 6.72 6.72 38.20 2.90
3326 4758 2.502142 TGCTCTGAAATCTGGCACAT 57.498 45.000 0.00 0.00 38.20 3.21
3334 4766 8.844244 ACTTACATATCCAAATGCTCTGAAATC 58.156 33.333 0.00 0.00 0.00 2.17
3371 4885 1.210478 GGCATCCAGGTAGCTCTCAAA 59.790 52.381 0.00 0.00 0.00 2.69
3372 4886 0.833287 GGCATCCAGGTAGCTCTCAA 59.167 55.000 0.00 0.00 0.00 3.02
3402 4916 2.715737 TTAGGTGCGTGCCAAATTTC 57.284 45.000 0.00 0.00 0.00 2.17
3418 4932 5.839262 TGTAAGACGTTTGAGTGCATTAG 57.161 39.130 0.00 0.00 0.00 1.73
3420 4934 6.795098 TTATGTAAGACGTTTGAGTGCATT 57.205 33.333 0.00 0.00 0.00 3.56
3422 4936 6.037281 TGTTTTATGTAAGACGTTTGAGTGCA 59.963 34.615 0.00 0.00 0.00 4.57
3481 4995 8.410141 CACCTGGTGAACAGTAAATTCTAAAAA 58.590 33.333 22.33 0.00 46.06 1.94
3486 5000 3.821033 GCACCTGGTGAACAGTAAATTCT 59.179 43.478 30.23 0.00 46.06 2.40
3487 5001 3.568007 TGCACCTGGTGAACAGTAAATTC 59.432 43.478 30.23 8.24 46.06 2.17
3499 5013 1.518325 TGTACGAATTGCACCTGGTG 58.482 50.000 22.46 22.46 36.51 4.17
3500 5014 2.264005 TTGTACGAATTGCACCTGGT 57.736 45.000 0.00 0.00 0.00 4.00
3504 5018 9.061610 GCAATATATATTTGTACGAATTGCACC 57.938 33.333 18.38 0.00 44.47 5.01
3505 5019 9.825972 AGCAATATATATTTGTACGAATTGCAC 57.174 29.630 22.48 4.35 46.40 4.57
3527 5066 9.209048 TCTTATATTTAGGAACAGAGGTAGCAA 57.791 33.333 0.00 0.00 0.00 3.91
3529 5068 8.639761 TGTCTTATATTTAGGAACAGAGGTAGC 58.360 37.037 0.00 0.00 0.00 3.58
3537 5076 9.249053 TGCCAAAATGTCTTATATTTAGGAACA 57.751 29.630 0.00 0.00 0.00 3.18
3538 5077 9.736023 CTGCCAAAATGTCTTATATTTAGGAAC 57.264 33.333 0.00 0.00 0.00 3.62
3555 5094 8.129211 GCGAAGTAAATATAAGACTGCCAAAAT 58.871 33.333 0.00 0.00 0.00 1.82
3559 5098 4.743151 CGCGAAGTAAATATAAGACTGCCA 59.257 41.667 0.00 0.00 0.00 4.92
3566 5105 3.120782 GCCGGACGCGAAGTAAATATAAG 59.879 47.826 15.93 0.00 0.00 1.73
3567 5106 3.052036 GCCGGACGCGAAGTAAATATAA 58.948 45.455 15.93 0.00 0.00 0.98
3568 5107 2.294233 AGCCGGACGCGAAGTAAATATA 59.706 45.455 15.93 0.00 44.76 0.86
3569 5108 1.068127 AGCCGGACGCGAAGTAAATAT 59.932 47.619 15.93 0.00 44.76 1.28
3570 5109 0.457035 AGCCGGACGCGAAGTAAATA 59.543 50.000 15.93 0.00 44.76 1.40
3571 5110 0.804933 GAGCCGGACGCGAAGTAAAT 60.805 55.000 15.93 0.00 44.76 1.40
3572 5111 1.444895 GAGCCGGACGCGAAGTAAA 60.445 57.895 15.93 0.00 44.76 2.01
3573 5112 2.180017 GAGCCGGACGCGAAGTAA 59.820 61.111 15.93 0.00 44.76 2.24
3574 5113 3.818787 GGAGCCGGACGCGAAGTA 61.819 66.667 15.93 0.00 44.76 2.24
3576 5115 4.856607 GAGGAGCCGGACGCGAAG 62.857 72.222 15.93 2.74 44.76 3.79
3586 5125 4.851214 AGGGAGCGGAGAGGAGCC 62.851 72.222 0.00 0.00 0.00 4.70
3587 5126 3.223589 GAGGGAGCGGAGAGGAGC 61.224 72.222 0.00 0.00 0.00 4.70
3588 5127 2.520741 GGAGGGAGCGGAGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
3589 5128 3.347590 TGGAGGGAGCGGAGAGGA 61.348 66.667 0.00 0.00 0.00 3.71
3590 5129 3.151022 GTGGAGGGAGCGGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
3591 5130 2.043450 AGTGGAGGGAGCGGAGAG 60.043 66.667 0.00 0.00 0.00 3.20
3592 5131 2.043852 GAGTGGAGGGAGCGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
3593 5132 3.151022 GGAGTGGAGGGAGCGGAG 61.151 72.222 0.00 0.00 0.00 4.63
3597 5136 3.462678 GACCGGAGTGGAGGGAGC 61.463 72.222 9.46 0.00 42.00 4.70
3598 5137 2.760385 GGACCGGAGTGGAGGGAG 60.760 72.222 9.46 0.00 42.00 4.30
3599 5138 4.753662 CGGACCGGAGTGGAGGGA 62.754 72.222 9.46 0.00 42.00 4.20
3618 5157 3.151022 GCTAGAGCCTGGTCCGCT 61.151 66.667 0.00 0.00 39.95 5.52
3619 5158 3.145422 GAGCTAGAGCCTGGTCCGC 62.145 68.421 0.00 0.00 43.38 5.54
3620 5159 1.112315 ATGAGCTAGAGCCTGGTCCG 61.112 60.000 0.00 0.00 43.38 4.79
3621 5160 1.127343 AATGAGCTAGAGCCTGGTCC 58.873 55.000 0.00 0.00 43.38 4.46
3622 5161 2.998316 AAATGAGCTAGAGCCTGGTC 57.002 50.000 0.00 0.00 43.38 4.02
3623 5162 2.573462 TGAAAATGAGCTAGAGCCTGGT 59.427 45.455 0.00 0.00 43.38 4.00
3624 5163 2.941720 GTGAAAATGAGCTAGAGCCTGG 59.058 50.000 0.00 0.00 43.38 4.45
3625 5164 3.603532 TGTGAAAATGAGCTAGAGCCTG 58.396 45.455 0.00 0.00 43.38 4.85
3626 5165 3.517100 TCTGTGAAAATGAGCTAGAGCCT 59.483 43.478 0.00 0.00 43.38 4.58
3627 5166 3.620821 GTCTGTGAAAATGAGCTAGAGCC 59.379 47.826 0.00 0.00 43.38 4.70
3628 5167 3.305629 CGTCTGTGAAAATGAGCTAGAGC 59.694 47.826 0.00 0.00 42.49 4.09
3629 5168 4.489810 ACGTCTGTGAAAATGAGCTAGAG 58.510 43.478 0.00 0.00 0.00 2.43
3630 5169 4.521130 ACGTCTGTGAAAATGAGCTAGA 57.479 40.909 0.00 0.00 0.00 2.43
3631 5170 5.597813 AAACGTCTGTGAAAATGAGCTAG 57.402 39.130 0.00 0.00 0.00 3.42
3632 5171 5.277779 CCAAAACGTCTGTGAAAATGAGCTA 60.278 40.000 0.00 0.00 0.00 3.32
3633 5172 4.498009 CCAAAACGTCTGTGAAAATGAGCT 60.498 41.667 0.00 0.00 0.00 4.09
3634 5173 3.730715 CCAAAACGTCTGTGAAAATGAGC 59.269 43.478 0.00 0.00 0.00 4.26
3635 5174 3.730715 GCCAAAACGTCTGTGAAAATGAG 59.269 43.478 0.00 0.00 0.00 2.90
3636 5175 3.129462 TGCCAAAACGTCTGTGAAAATGA 59.871 39.130 0.00 0.00 0.00 2.57
3637 5176 3.443037 TGCCAAAACGTCTGTGAAAATG 58.557 40.909 0.00 0.00 0.00 2.32
3638 5177 3.130340 ACTGCCAAAACGTCTGTGAAAAT 59.870 39.130 0.00 0.00 0.00 1.82
3639 5178 2.490115 ACTGCCAAAACGTCTGTGAAAA 59.510 40.909 0.00 0.00 0.00 2.29
3640 5179 2.088423 ACTGCCAAAACGTCTGTGAAA 58.912 42.857 0.00 0.00 0.00 2.69
3641 5180 1.400142 CACTGCCAAAACGTCTGTGAA 59.600 47.619 5.60 0.00 33.37 3.18
3642 5181 1.013596 CACTGCCAAAACGTCTGTGA 58.986 50.000 5.60 0.00 33.37 3.58
3643 5182 1.003545 CTCACTGCCAAAACGTCTGTG 60.004 52.381 0.00 0.00 0.00 3.66
3644 5183 1.299541 CTCACTGCCAAAACGTCTGT 58.700 50.000 0.00 0.00 0.00 3.41
3645 5184 0.040958 GCTCACTGCCAAAACGTCTG 60.041 55.000 0.00 0.00 35.15 3.51
3646 5185 0.179045 AGCTCACTGCCAAAACGTCT 60.179 50.000 0.00 0.00 44.23 4.18
3647 5186 0.235926 GAGCTCACTGCCAAAACGTC 59.764 55.000 9.40 0.00 44.23 4.34
3648 5187 1.166531 GGAGCTCACTGCCAAAACGT 61.167 55.000 17.19 0.00 44.23 3.99
3649 5188 1.165907 TGGAGCTCACTGCCAAAACG 61.166 55.000 17.19 0.00 44.23 3.60
3650 5189 0.312102 GTGGAGCTCACTGCCAAAAC 59.688 55.000 17.19 0.00 44.23 2.43
3651 5190 0.106769 TGTGGAGCTCACTGCCAAAA 60.107 50.000 17.19 0.00 46.20 2.44
3652 5191 0.106769 TTGTGGAGCTCACTGCCAAA 60.107 50.000 17.19 0.00 46.20 3.28
3653 5192 0.819259 GTTGTGGAGCTCACTGCCAA 60.819 55.000 17.19 7.29 46.20 4.52
3654 5193 1.227943 GTTGTGGAGCTCACTGCCA 60.228 57.895 17.19 0.66 46.20 4.92
3655 5194 0.952984 GAGTTGTGGAGCTCACTGCC 60.953 60.000 17.19 0.00 46.20 4.85
3656 5195 0.952984 GGAGTTGTGGAGCTCACTGC 60.953 60.000 17.19 11.67 46.20 4.40
3657 5196 0.668706 CGGAGTTGTGGAGCTCACTG 60.669 60.000 17.19 0.00 46.20 3.66
3658 5197 1.115930 ACGGAGTTGTGGAGCTCACT 61.116 55.000 17.19 10.24 46.20 3.41
3659 5198 0.946221 CACGGAGTTGTGGAGCTCAC 60.946 60.000 17.19 12.22 41.61 3.51
3660 5199 1.367471 CACGGAGTTGTGGAGCTCA 59.633 57.895 17.19 0.00 41.61 4.26
3661 5200 4.268687 CACGGAGTTGTGGAGCTC 57.731 61.111 4.71 4.71 41.61 4.09
3672 5211 0.962855 TCTGCTCTGACTCCACGGAG 60.963 60.000 11.67 11.67 46.91 4.63
3673 5212 0.962855 CTCTGCTCTGACTCCACGGA 60.963 60.000 0.00 0.00 0.00 4.69
3674 5213 0.962855 TCTCTGCTCTGACTCCACGG 60.963 60.000 0.00 0.00 0.00 4.94
3675 5214 1.102154 ATCTCTGCTCTGACTCCACG 58.898 55.000 0.00 0.00 0.00 4.94
3676 5215 2.098614 TCATCTCTGCTCTGACTCCAC 58.901 52.381 0.00 0.00 0.00 4.02
3677 5216 2.377073 CTCATCTCTGCTCTGACTCCA 58.623 52.381 0.00 0.00 0.00 3.86
3678 5217 1.682854 CCTCATCTCTGCTCTGACTCC 59.317 57.143 0.00 0.00 0.00 3.85
3679 5218 1.682854 CCCTCATCTCTGCTCTGACTC 59.317 57.143 0.00 0.00 0.00 3.36
3680 5219 1.287442 TCCCTCATCTCTGCTCTGACT 59.713 52.381 0.00 0.00 0.00 3.41
3681 5220 1.774110 TCCCTCATCTCTGCTCTGAC 58.226 55.000 0.00 0.00 0.00 3.51
3682 5221 2.771562 ATCCCTCATCTCTGCTCTGA 57.228 50.000 0.00 0.00 0.00 3.27
3683 5222 2.037511 GGAATCCCTCATCTCTGCTCTG 59.962 54.545 0.00 0.00 0.00 3.35
3684 5223 2.328319 GGAATCCCTCATCTCTGCTCT 58.672 52.381 0.00 0.00 0.00 4.09
3685 5224 1.000731 CGGAATCCCTCATCTCTGCTC 59.999 57.143 0.00 0.00 0.00 4.26
3686 5225 1.047002 CGGAATCCCTCATCTCTGCT 58.953 55.000 0.00 0.00 0.00 4.24
3687 5226 1.043816 TCGGAATCCCTCATCTCTGC 58.956 55.000 0.00 0.00 0.00 4.26
3688 5227 2.432146 TGTTCGGAATCCCTCATCTCTG 59.568 50.000 0.00 0.00 0.00 3.35
3689 5228 2.752030 TGTTCGGAATCCCTCATCTCT 58.248 47.619 0.00 0.00 0.00 3.10
3690 5229 3.462021 CTTGTTCGGAATCCCTCATCTC 58.538 50.000 0.00 0.00 0.00 2.75
3691 5230 2.171448 CCTTGTTCGGAATCCCTCATCT 59.829 50.000 0.00 0.00 0.00 2.90
3692 5231 2.565841 CCTTGTTCGGAATCCCTCATC 58.434 52.381 0.00 0.00 0.00 2.92
3693 5232 1.408822 GCCTTGTTCGGAATCCCTCAT 60.409 52.381 0.00 0.00 0.00 2.90
3694 5233 0.035439 GCCTTGTTCGGAATCCCTCA 60.035 55.000 0.00 0.00 0.00 3.86
3695 5234 0.748367 GGCCTTGTTCGGAATCCCTC 60.748 60.000 0.00 0.00 0.00 4.30
3696 5235 1.208165 AGGCCTTGTTCGGAATCCCT 61.208 55.000 0.00 0.00 0.00 4.20
3697 5236 0.323451 AAGGCCTTGTTCGGAATCCC 60.323 55.000 19.73 0.00 0.00 3.85
3698 5237 2.289565 CTAAGGCCTTGTTCGGAATCC 58.710 52.381 28.77 0.00 0.00 3.01
3699 5238 2.093128 TCCTAAGGCCTTGTTCGGAATC 60.093 50.000 28.77 0.00 0.00 2.52
3700 5239 1.913419 TCCTAAGGCCTTGTTCGGAAT 59.087 47.619 28.77 0.00 0.00 3.01
3701 5240 1.354101 TCCTAAGGCCTTGTTCGGAA 58.646 50.000 28.77 4.85 0.00 4.30
3702 5241 1.354101 TTCCTAAGGCCTTGTTCGGA 58.646 50.000 28.77 22.43 0.00 4.55
3703 5242 2.420058 ATTCCTAAGGCCTTGTTCGG 57.580 50.000 28.77 20.65 0.00 4.30
3704 5243 4.372656 CTCTATTCCTAAGGCCTTGTTCG 58.627 47.826 28.77 12.86 0.00 3.95
3705 5244 4.164413 ACCTCTATTCCTAAGGCCTTGTTC 59.836 45.833 28.77 0.00 33.21 3.18
3706 5245 4.080299 CACCTCTATTCCTAAGGCCTTGTT 60.080 45.833 28.77 4.09 33.21 2.83
3707 5246 3.456277 CACCTCTATTCCTAAGGCCTTGT 59.544 47.826 28.77 10.08 33.21 3.16
3708 5247 3.181450 CCACCTCTATTCCTAAGGCCTTG 60.181 52.174 28.77 16.94 33.21 3.61
3709 5248 3.049344 CCACCTCTATTCCTAAGGCCTT 58.951 50.000 24.18 24.18 33.21 4.35
3710 5249 2.021936 ACCACCTCTATTCCTAAGGCCT 60.022 50.000 0.00 0.00 33.21 5.19
3711 5250 2.409570 ACCACCTCTATTCCTAAGGCC 58.590 52.381 0.00 0.00 33.21 5.19
3712 5251 4.224762 ACTACCACCTCTATTCCTAAGGC 58.775 47.826 0.00 0.00 33.21 4.35
3713 5252 6.612741 AGTACTACCACCTCTATTCCTAAGG 58.387 44.000 0.00 0.00 36.21 2.69
3723 5262 7.830201 GCACTGATATATAGTACTACCACCTCT 59.170 40.741 4.31 0.00 0.00 3.69
3724 5263 7.067251 GGCACTGATATATAGTACTACCACCTC 59.933 44.444 4.31 0.16 0.00 3.85
3725 5264 6.890814 GGCACTGATATATAGTACTACCACCT 59.109 42.308 4.31 0.00 0.00 4.00
3726 5265 6.662234 TGGCACTGATATATAGTACTACCACC 59.338 42.308 4.31 0.00 0.00 4.61
3727 5266 7.698506 TGGCACTGATATATAGTACTACCAC 57.301 40.000 4.31 0.00 0.00 4.16
3728 5267 8.895141 ATTGGCACTGATATATAGTACTACCA 57.105 34.615 4.31 1.16 0.00 3.25
3734 5273 9.725019 CCAGAAAATTGGCACTGATATATAGTA 57.275 33.333 3.82 0.00 32.90 1.82
3735 5274 8.220559 ACCAGAAAATTGGCACTGATATATAGT 58.779 33.333 3.82 0.00 42.18 2.12
3736 5275 8.509690 CACCAGAAAATTGGCACTGATATATAG 58.490 37.037 3.82 0.00 42.18 1.31
3804 5343 9.742144 CTGATACATAGTACTACTACCTCCATT 57.258 37.037 4.31 0.00 32.84 3.16
3805 5344 8.892530 ACTGATACATAGTACTACTACCTCCAT 58.107 37.037 4.31 0.00 32.84 3.41
3806 5345 8.155510 CACTGATACATAGTACTACTACCTCCA 58.844 40.741 4.31 0.00 32.84 3.86
3807 5346 7.119553 GCACTGATACATAGTACTACTACCTCC 59.880 44.444 4.31 0.00 32.84 4.30
3808 5347 7.119553 GGCACTGATACATAGTACTACTACCTC 59.880 44.444 4.31 0.16 32.84 3.85
3809 5348 6.941436 GGCACTGATACATAGTACTACTACCT 59.059 42.308 4.31 0.00 32.84 3.08
3810 5349 6.713903 TGGCACTGATACATAGTACTACTACC 59.286 42.308 4.31 0.00 32.84 3.18
3811 5350 7.741027 TGGCACTGATACATAGTACTACTAC 57.259 40.000 4.31 0.00 32.84 2.73
3812 5351 7.997223 AGTTGGCACTGATACATAGTACTACTA 59.003 37.037 4.31 0.00 34.82 1.82
3813 5352 6.834451 AGTTGGCACTGATACATAGTACTACT 59.166 38.462 4.31 0.00 0.00 2.57
3814 5353 7.040473 AGTTGGCACTGATACATAGTACTAC 57.960 40.000 4.31 0.00 0.00 2.73
3815 5354 7.655521 AAGTTGGCACTGATACATAGTACTA 57.344 36.000 4.77 4.77 31.60 1.82
3816 5355 6.546428 AAGTTGGCACTGATACATAGTACT 57.454 37.500 0.00 0.00 31.60 2.73
3817 5356 7.010552 CAGAAAGTTGGCACTGATACATAGTAC 59.989 40.741 0.00 0.00 31.60 2.73
3818 5357 7.041721 CAGAAAGTTGGCACTGATACATAGTA 58.958 38.462 0.00 0.00 31.60 1.82
3819 5358 5.877012 CAGAAAGTTGGCACTGATACATAGT 59.123 40.000 0.00 0.00 31.60 2.12
3820 5359 5.295292 CCAGAAAGTTGGCACTGATACATAG 59.705 44.000 3.82 0.00 31.60 2.23
3821 5360 5.185454 CCAGAAAGTTGGCACTGATACATA 58.815 41.667 3.82 0.00 31.60 2.29
3822 5361 4.012374 CCAGAAAGTTGGCACTGATACAT 58.988 43.478 3.82 0.00 31.60 2.29
3823 5362 3.181445 ACCAGAAAGTTGGCACTGATACA 60.181 43.478 3.82 0.00 42.18 2.29
3824 5363 3.189287 CACCAGAAAGTTGGCACTGATAC 59.811 47.826 3.82 0.00 42.18 2.24
3825 5364 3.411446 CACCAGAAAGTTGGCACTGATA 58.589 45.455 3.82 0.00 42.18 2.15
3826 5365 2.233271 CACCAGAAAGTTGGCACTGAT 58.767 47.619 3.82 0.00 42.18 2.90
3827 5366 1.679139 CACCAGAAAGTTGGCACTGA 58.321 50.000 3.82 0.00 42.18 3.41
3828 5367 0.031178 GCACCAGAAAGTTGGCACTG 59.969 55.000 0.00 0.00 42.18 3.66
3829 5368 1.109323 GGCACCAGAAAGTTGGCACT 61.109 55.000 0.00 0.00 42.18 4.40
3830 5369 1.363807 GGCACCAGAAAGTTGGCAC 59.636 57.895 0.00 0.00 42.18 5.01
3831 5370 0.469705 ATGGCACCAGAAAGTTGGCA 60.470 50.000 0.00 0.00 42.18 4.92
3832 5371 0.681175 AATGGCACCAGAAAGTTGGC 59.319 50.000 0.00 0.00 42.18 4.52
3833 5372 2.629617 AGAAATGGCACCAGAAAGTTGG 59.370 45.455 0.00 0.00 44.09 3.77
3834 5373 5.452078 TTAGAAATGGCACCAGAAAGTTG 57.548 39.130 0.00 0.00 0.00 3.16
3835 5374 6.267471 TCATTTAGAAATGGCACCAGAAAGTT 59.733 34.615 13.60 0.00 44.51 2.66
3836 5375 5.774690 TCATTTAGAAATGGCACCAGAAAGT 59.225 36.000 13.60 0.00 44.51 2.66
3837 5376 6.271488 TCATTTAGAAATGGCACCAGAAAG 57.729 37.500 13.60 0.00 44.51 2.62
3838 5377 6.662865 TTCATTTAGAAATGGCACCAGAAA 57.337 33.333 13.60 0.00 44.51 2.52
3839 5378 6.662865 TTTCATTTAGAAATGGCACCAGAA 57.337 33.333 13.60 0.00 44.51 3.02
3840 5379 6.662865 TTTTCATTTAGAAATGGCACCAGA 57.337 33.333 13.60 0.00 45.15 3.86
3841 5380 7.910441 ATTTTTCATTTAGAAATGGCACCAG 57.090 32.000 13.60 0.00 45.15 4.00
3842 5381 7.308469 GCAATTTTTCATTTAGAAATGGCACCA 60.308 33.333 13.60 0.00 45.15 4.17
3843 5382 7.022979 GCAATTTTTCATTTAGAAATGGCACC 58.977 34.615 13.60 0.00 45.15 5.01
3844 5383 7.583230 TGCAATTTTTCATTTAGAAATGGCAC 58.417 30.769 13.60 0.00 45.15 5.01
3845 5384 7.741027 TGCAATTTTTCATTTAGAAATGGCA 57.259 28.000 13.60 10.54 45.15 4.92
3846 5385 7.911727 GGATGCAATTTTTCATTTAGAAATGGC 59.088 33.333 13.60 8.51 45.15 4.40
3847 5386 8.948145 TGGATGCAATTTTTCATTTAGAAATGG 58.052 29.630 13.60 0.00 45.15 3.16
3848 5387 9.763465 GTGGATGCAATTTTTCATTTAGAAATG 57.237 29.630 8.42 8.42 45.15 2.32
3849 5388 9.504708 TGTGGATGCAATTTTTCATTTAGAAAT 57.495 25.926 0.00 0.00 45.15 2.17
3850 5389 8.899427 TGTGGATGCAATTTTTCATTTAGAAA 57.101 26.923 0.00 0.00 44.21 2.52
3851 5390 9.153721 GATGTGGATGCAATTTTTCATTTAGAA 57.846 29.630 0.00 0.00 0.00 2.10
3852 5391 7.488792 CGATGTGGATGCAATTTTTCATTTAGA 59.511 33.333 0.00 0.00 0.00 2.10
3853 5392 7.488792 TCGATGTGGATGCAATTTTTCATTTAG 59.511 33.333 0.00 0.00 0.00 1.85
3854 5393 7.318893 TCGATGTGGATGCAATTTTTCATTTA 58.681 30.769 0.00 0.00 0.00 1.40
3855 5394 6.164876 TCGATGTGGATGCAATTTTTCATTT 58.835 32.000 0.00 0.00 0.00 2.32
3856 5395 5.722263 TCGATGTGGATGCAATTTTTCATT 58.278 33.333 0.00 0.00 0.00 2.57
3857 5396 5.327616 TCGATGTGGATGCAATTTTTCAT 57.672 34.783 0.00 0.00 0.00 2.57
3858 5397 4.780275 TCGATGTGGATGCAATTTTTCA 57.220 36.364 0.00 0.00 0.00 2.69
3859 5398 4.505191 CCATCGATGTGGATGCAATTTTTC 59.495 41.667 23.27 0.00 41.95 2.29
3860 5399 4.081531 ACCATCGATGTGGATGCAATTTTT 60.082 37.500 23.27 0.00 41.95 1.94
3861 5400 3.448301 ACCATCGATGTGGATGCAATTTT 59.552 39.130 23.27 0.00 41.95 1.82
3862 5401 3.025978 ACCATCGATGTGGATGCAATTT 58.974 40.909 23.27 0.00 41.95 1.82
3863 5402 2.620115 GACCATCGATGTGGATGCAATT 59.380 45.455 23.27 0.00 41.95 2.32
3864 5403 2.158711 AGACCATCGATGTGGATGCAAT 60.159 45.455 23.27 0.00 41.95 3.56
3865 5404 1.210234 AGACCATCGATGTGGATGCAA 59.790 47.619 23.27 0.00 41.95 4.08
3866 5405 0.832626 AGACCATCGATGTGGATGCA 59.167 50.000 23.27 0.00 41.95 3.96
3867 5406 1.869767 GAAGACCATCGATGTGGATGC 59.130 52.381 23.27 6.88 41.95 3.91
3868 5407 2.130395 CGAAGACCATCGATGTGGATG 58.870 52.381 23.27 10.49 45.48 3.51
3869 5408 1.069204 CCGAAGACCATCGATGTGGAT 59.931 52.381 23.27 7.60 45.48 3.41
3870 5409 0.459899 CCGAAGACCATCGATGTGGA 59.540 55.000 23.27 0.00 45.48 4.02
3871 5410 0.530650 CCCGAAGACCATCGATGTGG 60.531 60.000 23.27 13.87 45.48 4.17
3872 5411 1.154205 GCCCGAAGACCATCGATGTG 61.154 60.000 23.27 16.61 45.48 3.21
3873 5412 1.144057 GCCCGAAGACCATCGATGT 59.856 57.895 23.27 11.88 45.48 3.06
3874 5413 1.595382 GGCCCGAAGACCATCGATG 60.595 63.158 18.76 18.76 45.48 3.84
3875 5414 1.410850 ATGGCCCGAAGACCATCGAT 61.411 55.000 0.00 0.00 45.48 3.59
3876 5415 2.063979 ATGGCCCGAAGACCATCGA 61.064 57.895 0.00 0.00 45.48 3.59
3877 5416 1.889105 CATGGCCCGAAGACCATCG 60.889 63.158 0.00 0.00 41.25 3.84
3878 5417 1.526917 CCATGGCCCGAAGACCATC 60.527 63.158 0.00 0.00 41.25 3.51
3879 5418 1.987807 CTCCATGGCCCGAAGACCAT 61.988 60.000 6.96 0.00 43.38 3.55
3880 5419 2.609299 TCCATGGCCCGAAGACCA 60.609 61.111 6.96 0.00 37.90 4.02
3881 5420 2.190578 CTCCATGGCCCGAAGACC 59.809 66.667 6.96 0.00 0.00 3.85
3882 5421 2.190578 CCTCCATGGCCCGAAGAC 59.809 66.667 6.96 0.00 0.00 3.01
3883 5422 2.285368 ACCTCCATGGCCCGAAGA 60.285 61.111 6.96 0.00 40.22 2.87
3884 5423 2.124570 CACCTCCATGGCCCGAAG 60.125 66.667 6.96 0.00 40.22 3.79
3885 5424 2.609299 TCACCTCCATGGCCCGAA 60.609 61.111 6.96 0.00 40.22 4.30
3886 5425 3.083349 CTCACCTCCATGGCCCGA 61.083 66.667 6.96 0.00 40.22 5.14
3887 5426 4.181010 CCTCACCTCCATGGCCCG 62.181 72.222 6.96 0.00 40.22 6.13
3888 5427 2.692368 TCCTCACCTCCATGGCCC 60.692 66.667 6.96 0.00 40.22 5.80
3889 5428 2.914289 CTCCTCACCTCCATGGCC 59.086 66.667 6.96 0.00 40.22 5.36
3890 5429 2.191641 GCTCCTCACCTCCATGGC 59.808 66.667 6.96 0.00 40.22 4.40
3891 5430 1.222936 GTGCTCCTCACCTCCATGG 59.777 63.158 4.97 4.97 39.79 3.66
3892 5431 4.950479 GTGCTCCTCACCTCCATG 57.050 61.111 0.00 0.00 39.79 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.