Multiple sequence alignment - TraesCS6A01G269900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G269900 chr6A 100.000 3266 0 0 1 3266 496416412 496419677 0.000000e+00 6032
1 TraesCS6A01G269900 chr6A 98.563 696 6 2 2569 3264 496426531 496427222 0.000000e+00 1227
2 TraesCS6A01G269900 chr6A 97.414 696 18 0 2569 3264 138610539 138609844 0.000000e+00 1186
3 TraesCS6A01G269900 chr6A 97.418 697 16 2 2569 3264 296616647 296615952 0.000000e+00 1186
4 TraesCS6A01G269900 chr6A 97.279 294 8 0 2275 2568 496434074 496434367 1.750000e-137 499
5 TraesCS6A01G269900 chrUn 95.178 2281 102 4 1 2274 92657267 92659546 0.000000e+00 3596
6 TraesCS6A01G269900 chr6D 95.086 2279 104 4 4 2274 411365376 411363098 0.000000e+00 3581
7 TraesCS6A01G269900 chr6D 95.000 2280 105 5 1 2274 437005279 437007555 0.000000e+00 3570
8 TraesCS6A01G269900 chr6D 95.932 295 12 0 2274 2568 411283857 411283563 2.280000e-131 479
9 TraesCS6A01G269900 chr4D 95.040 2278 105 5 4 2274 482669896 482667620 0.000000e+00 3574
10 TraesCS6A01G269900 chr7D 94.998 2279 109 3 1 2274 610300216 610302494 0.000000e+00 3572
11 TraesCS6A01G269900 chr7D 94.915 2281 105 8 1 2273 614566395 614568672 0.000000e+00 3559
12 TraesCS6A01G269900 chr7D 96.271 295 11 0 2274 2568 610356202 610356496 4.900000e-133 484
13 TraesCS6A01G269900 chr7D 95.946 296 11 1 2274 2568 574579547 574579842 2.280000e-131 479
14 TraesCS6A01G269900 chr5D 94.906 2277 107 5 4 2274 539389234 539386961 0.000000e+00 3554
15 TraesCS6A01G269900 chr5D 97.288 295 8 0 2274 2568 539288416 539288122 4.860000e-138 501
16 TraesCS6A01G269900 chr3D 94.906 2277 106 7 4 2274 483312754 483310482 0.000000e+00 3554
17 TraesCS6A01G269900 chr3D 95.932 295 12 0 2274 2568 516235276 516234982 2.280000e-131 479
18 TraesCS6A01G269900 chr2D 94.857 2275 116 1 1 2274 522778917 522781191 0.000000e+00 3552
19 TraesCS6A01G269900 chr2D 95.932 295 12 0 2274 2568 567115209 567114915 2.280000e-131 479
20 TraesCS6A01G269900 chr5A 97.561 697 15 2 2569 3264 267736211 267735516 0.000000e+00 1192
21 TraesCS6A01G269900 chr5A 97.297 703 16 3 2565 3264 383859822 383859120 0.000000e+00 1190
22 TraesCS6A01G269900 chr7A 97.421 698 16 2 2568 3264 279665419 279666115 0.000000e+00 1188
23 TraesCS6A01G269900 chr7A 97.421 698 16 2 2568 3264 360690812 360690116 0.000000e+00 1188
24 TraesCS6A01G269900 chr7A 96.949 295 9 0 2274 2568 93385314 93385608 2.260000e-136 496
25 TraesCS6A01G269900 chr4A 97.425 699 14 4 2569 3264 632127166 632126469 0.000000e+00 1188
26 TraesCS6A01G269900 chr1A 96.624 711 21 3 2557 3264 211132169 211131459 0.000000e+00 1177
27 TraesCS6A01G269900 chr1A 95.932 295 12 0 2274 2568 118107607 118107313 2.280000e-131 479


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G269900 chr6A 496416412 496419677 3265 False 6032 6032 100.000 1 3266 1 chr6A.!!$F1 3265
1 TraesCS6A01G269900 chr6A 496426531 496427222 691 False 1227 1227 98.563 2569 3264 1 chr6A.!!$F2 695
2 TraesCS6A01G269900 chr6A 138609844 138610539 695 True 1186 1186 97.414 2569 3264 1 chr6A.!!$R1 695
3 TraesCS6A01G269900 chr6A 296615952 296616647 695 True 1186 1186 97.418 2569 3264 1 chr6A.!!$R2 695
4 TraesCS6A01G269900 chrUn 92657267 92659546 2279 False 3596 3596 95.178 1 2274 1 chrUn.!!$F1 2273
5 TraesCS6A01G269900 chr6D 411363098 411365376 2278 True 3581 3581 95.086 4 2274 1 chr6D.!!$R2 2270
6 TraesCS6A01G269900 chr6D 437005279 437007555 2276 False 3570 3570 95.000 1 2274 1 chr6D.!!$F1 2273
7 TraesCS6A01G269900 chr4D 482667620 482669896 2276 True 3574 3574 95.040 4 2274 1 chr4D.!!$R1 2270
8 TraesCS6A01G269900 chr7D 610300216 610302494 2278 False 3572 3572 94.998 1 2274 1 chr7D.!!$F2 2273
9 TraesCS6A01G269900 chr7D 614566395 614568672 2277 False 3559 3559 94.915 1 2273 1 chr7D.!!$F4 2272
10 TraesCS6A01G269900 chr5D 539386961 539389234 2273 True 3554 3554 94.906 4 2274 1 chr5D.!!$R2 2270
11 TraesCS6A01G269900 chr3D 483310482 483312754 2272 True 3554 3554 94.906 4 2274 1 chr3D.!!$R1 2270
12 TraesCS6A01G269900 chr2D 522778917 522781191 2274 False 3552 3552 94.857 1 2274 1 chr2D.!!$F1 2273
13 TraesCS6A01G269900 chr5A 267735516 267736211 695 True 1192 1192 97.561 2569 3264 1 chr5A.!!$R1 695
14 TraesCS6A01G269900 chr5A 383859120 383859822 702 True 1190 1190 97.297 2565 3264 1 chr5A.!!$R2 699
15 TraesCS6A01G269900 chr7A 279665419 279666115 696 False 1188 1188 97.421 2568 3264 1 chr7A.!!$F2 696
16 TraesCS6A01G269900 chr7A 360690116 360690812 696 True 1188 1188 97.421 2568 3264 1 chr7A.!!$R1 696
17 TraesCS6A01G269900 chr4A 632126469 632127166 697 True 1188 1188 97.425 2569 3264 1 chr4A.!!$R1 695
18 TraesCS6A01G269900 chr1A 211131459 211132169 710 True 1177 1177 96.624 2557 3264 1 chr1A.!!$R2 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 835 0.100682 ACGACGAGCGCATGTATTCT 59.899 50.0 11.47 0.0 46.04 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2496 2511 0.032952 TCGTATAGGCCATTCCGTGC 59.967 55.0 5.01 0.0 40.77 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 57 2.740826 GCTGGCGGCGTTGAAGTA 60.741 61.111 9.37 0.00 0.00 2.24
70 74 4.393680 TGAAGTACTTGCTTCGTTGTTGTT 59.606 37.500 14.14 0.00 45.67 2.83
120 124 2.668250 CGTTTGACGGTGTGTATCTCA 58.332 47.619 0.00 0.00 38.08 3.27
181 185 1.183549 GCGAGGGGAACTCTACTTGA 58.816 55.000 0.00 0.00 44.33 3.02
190 194 5.077564 GGGAACTCTACTTGAAATTTGGGT 58.922 41.667 0.00 0.00 0.00 4.51
198 202 4.208746 ACTTGAAATTTGGGTCCGTGTAA 58.791 39.130 0.00 0.00 0.00 2.41
206 210 1.700739 TGGGTCCGTGTAATGAACCTT 59.299 47.619 0.00 0.00 39.21 3.50
207 211 2.106857 TGGGTCCGTGTAATGAACCTTT 59.893 45.455 0.00 0.00 39.21 3.11
217 221 5.586643 GTGTAATGAACCTTTGAGGAGATCC 59.413 44.000 0.07 0.00 37.67 3.36
270 274 3.796111 TGTGGAAGAGAGGAAGGAAGAT 58.204 45.455 0.00 0.00 0.00 2.40
287 291 4.287552 GAAGATAGTAGTGGAGGTGGGAA 58.712 47.826 0.00 0.00 0.00 3.97
311 315 4.771114 ATGGAAATGATGGAACCGTCTA 57.229 40.909 13.24 2.20 33.41 2.59
358 362 0.670546 CAAGATTCGTGTCGCCTGGT 60.671 55.000 0.00 0.00 0.00 4.00
389 402 6.531948 CCGCTATACCATCTTAATAGAAGTGC 59.468 42.308 0.00 0.00 33.20 4.40
456 469 3.982516 AGAGGCACTGGTATCAACTCTA 58.017 45.455 0.00 0.00 41.55 2.43
541 554 6.698766 GGTTGTGAAGTCTTTAGAGTTACGAA 59.301 38.462 0.00 0.00 37.79 3.85
554 567 2.129607 GTTACGAACGTGTGTCACCAT 58.870 47.619 10.14 0.00 0.00 3.55
721 734 5.150683 GTGCGAGCAATAACATTTGTTACA 58.849 37.500 5.34 0.00 42.55 2.41
749 762 0.165944 CAGACGATTTGACGGTTGCC 59.834 55.000 0.00 0.00 37.61 4.52
756 769 1.770294 TTTGACGGTTGCCTTTTCCT 58.230 45.000 0.00 0.00 0.00 3.36
758 771 1.285950 GACGGTTGCCTTTTCCTGC 59.714 57.895 0.00 0.00 0.00 4.85
818 831 2.441378 GCAACGACGAGCGCATGTA 61.441 57.895 11.47 0.00 46.04 2.29
822 835 0.100682 ACGACGAGCGCATGTATTCT 59.899 50.000 11.47 0.00 46.04 2.40
829 842 0.533755 GCGCATGTATTCTGCCCTCT 60.534 55.000 0.30 0.00 36.24 3.69
933 947 6.348458 CCGCTCAATTCTGAAAACACTATTGA 60.348 38.462 0.00 0.00 32.78 2.57
934 948 7.246311 CGCTCAATTCTGAAAACACTATTGAT 58.754 34.615 0.00 0.00 33.18 2.57
987 1001 4.015406 TGTCAAGGCGGCCATCGT 62.015 61.111 23.09 0.00 41.72 3.73
1024 1038 0.329596 GGAGGAACCATCTGCCAAGT 59.670 55.000 0.00 0.00 38.79 3.16
1055 1069 1.658686 GAGACGTCCGACCAGAGCAT 61.659 60.000 13.01 0.00 0.00 3.79
1074 1088 0.963225 TGGAGGTCGACGATGTTCAA 59.037 50.000 9.92 0.00 0.00 2.69
1158 1172 0.826715 AGCTGGATGTCGTATGCACT 59.173 50.000 0.00 0.00 0.00 4.40
1333 1347 6.070251 ACTCTGTTTGGTATATCACATCACCA 60.070 38.462 0.00 0.00 39.27 4.17
1393 1407 7.349598 ACCTCTCCATGCTTCTGTTTAATTAT 58.650 34.615 0.00 0.00 0.00 1.28
1404 1418 7.484959 GCTTCTGTTTAATTATCTTTTCACCCG 59.515 37.037 0.00 0.00 0.00 5.28
1469 1483 3.999663 AGTTTCTGAAGTAGATGCAGCAC 59.000 43.478 4.07 0.06 34.80 4.40
1563 1577 9.302345 TGATGTACGAGATTATTTTCTGAACTC 57.698 33.333 0.00 0.00 0.00 3.01
1675 1689 7.873505 GTGGCTAAGAAGTAGATAGGTAATTGG 59.126 40.741 0.00 0.00 30.50 3.16
1740 1754 8.239998 GCTTGTATTTTATTTCTGAACTCTGCT 58.760 33.333 0.00 0.00 0.00 4.24
1765 1779 5.036737 AGCAGTTTCTGAAATGTTTTCGTG 58.963 37.500 6.06 0.00 33.58 4.35
1803 1817 8.294577 CGTACTATATAAGCATGTACTTGACCA 58.705 37.037 12.65 0.00 33.47 4.02
1814 1828 8.046708 AGCATGTACTTGACCAATACTTAATGA 58.953 33.333 12.65 0.00 0.00 2.57
1831 1845 7.547227 ACTTAATGAATCCACCTTAAATGTGC 58.453 34.615 0.33 0.00 32.30 4.57
2095 2110 9.823647 TGAAGGATAAGATTGATAGAGTTGAAC 57.176 33.333 0.00 0.00 0.00 3.18
2244 2259 7.679164 GCAAAAGAGGCAGAGAAGAATTATGAG 60.679 40.741 0.00 0.00 0.00 2.90
2274 2289 4.701765 ACTACGGATACTAGTGATGACGT 58.298 43.478 5.39 11.16 37.14 4.34
2275 2290 5.121811 ACTACGGATACTAGTGATGACGTT 58.878 41.667 5.39 0.00 34.89 3.99
2276 2291 4.548991 ACGGATACTAGTGATGACGTTC 57.451 45.455 5.39 0.00 0.00 3.95
2277 2292 3.002042 ACGGATACTAGTGATGACGTTCG 59.998 47.826 5.39 0.00 0.00 3.95
2278 2293 3.002042 CGGATACTAGTGATGACGTTCGT 59.998 47.826 5.39 0.00 0.00 3.85
2279 2294 4.280461 GGATACTAGTGATGACGTTCGTG 58.720 47.826 5.39 0.00 0.00 4.35
2280 2295 4.201891 GGATACTAGTGATGACGTTCGTGT 60.202 45.833 5.39 0.00 0.00 4.49
2281 2296 3.198863 ACTAGTGATGACGTTCGTGTC 57.801 47.619 1.74 1.91 39.37 3.67
2282 2297 2.812591 ACTAGTGATGACGTTCGTGTCT 59.187 45.455 1.74 0.00 39.64 3.41
2283 2298 3.999001 ACTAGTGATGACGTTCGTGTCTA 59.001 43.478 1.74 0.00 39.64 2.59
2284 2299 3.198863 AGTGATGACGTTCGTGTCTAC 57.801 47.619 1.74 3.28 39.64 2.59
2285 2300 2.551032 AGTGATGACGTTCGTGTCTACA 59.449 45.455 1.74 0.00 39.64 2.74
2286 2301 3.190744 AGTGATGACGTTCGTGTCTACAT 59.809 43.478 1.74 0.00 39.64 2.29
2287 2302 3.918591 GTGATGACGTTCGTGTCTACATT 59.081 43.478 1.74 0.00 39.64 2.71
2288 2303 4.384846 GTGATGACGTTCGTGTCTACATTT 59.615 41.667 1.74 0.00 39.64 2.32
2289 2304 4.384547 TGATGACGTTCGTGTCTACATTTG 59.615 41.667 1.74 0.00 39.64 2.32
2290 2305 3.708890 TGACGTTCGTGTCTACATTTGT 58.291 40.909 1.74 0.00 39.64 2.83
2291 2306 3.487942 TGACGTTCGTGTCTACATTTGTG 59.512 43.478 1.74 0.00 39.64 3.33
2292 2307 3.450578 ACGTTCGTGTCTACATTTGTGT 58.549 40.909 0.00 0.00 0.00 3.72
2293 2308 3.488310 ACGTTCGTGTCTACATTTGTGTC 59.512 43.478 0.00 0.00 0.00 3.67
2294 2309 3.734231 CGTTCGTGTCTACATTTGTGTCT 59.266 43.478 0.00 0.00 0.00 3.41
2295 2310 4.143597 CGTTCGTGTCTACATTTGTGTCTC 60.144 45.833 0.00 0.00 0.00 3.36
2296 2311 4.848562 TCGTGTCTACATTTGTGTCTCT 57.151 40.909 0.00 0.00 0.00 3.10
2297 2312 5.196341 TCGTGTCTACATTTGTGTCTCTT 57.804 39.130 0.00 0.00 0.00 2.85
2298 2313 5.597806 TCGTGTCTACATTTGTGTCTCTTT 58.402 37.500 0.00 0.00 0.00 2.52
2299 2314 5.462068 TCGTGTCTACATTTGTGTCTCTTTG 59.538 40.000 0.00 0.00 0.00 2.77
2300 2315 5.234329 CGTGTCTACATTTGTGTCTCTTTGT 59.766 40.000 0.00 0.00 0.00 2.83
2301 2316 6.422223 GTGTCTACATTTGTGTCTCTTTGTG 58.578 40.000 0.00 0.00 0.00 3.33
2302 2317 6.037172 GTGTCTACATTTGTGTCTCTTTGTGT 59.963 38.462 0.00 0.00 0.00 3.72
2303 2318 6.597672 TGTCTACATTTGTGTCTCTTTGTGTT 59.402 34.615 0.00 0.00 0.00 3.32
2304 2319 7.126398 GTCTACATTTGTGTCTCTTTGTGTTC 58.874 38.462 0.00 0.00 0.00 3.18
2305 2320 5.248870 ACATTTGTGTCTCTTTGTGTTCC 57.751 39.130 0.00 0.00 0.00 3.62
2306 2321 4.704540 ACATTTGTGTCTCTTTGTGTTCCA 59.295 37.500 0.00 0.00 0.00 3.53
2307 2322 4.963276 TTTGTGTCTCTTTGTGTTCCAG 57.037 40.909 0.00 0.00 0.00 3.86
2308 2323 3.904800 TGTGTCTCTTTGTGTTCCAGA 57.095 42.857 0.00 0.00 0.00 3.86
2309 2324 4.422073 TGTGTCTCTTTGTGTTCCAGAT 57.578 40.909 0.00 0.00 0.00 2.90
2310 2325 4.129380 TGTGTCTCTTTGTGTTCCAGATG 58.871 43.478 0.00 0.00 0.00 2.90
2311 2326 4.141733 TGTGTCTCTTTGTGTTCCAGATGA 60.142 41.667 0.00 0.00 0.00 2.92
2312 2327 4.212214 GTGTCTCTTTGTGTTCCAGATGAC 59.788 45.833 0.00 0.00 0.00 3.06
2313 2328 4.101585 TGTCTCTTTGTGTTCCAGATGACT 59.898 41.667 0.00 0.00 0.00 3.41
2314 2329 4.688413 GTCTCTTTGTGTTCCAGATGACTC 59.312 45.833 0.00 0.00 0.00 3.36
2315 2330 3.999663 CTCTTTGTGTTCCAGATGACTCC 59.000 47.826 0.00 0.00 0.00 3.85
2316 2331 3.390967 TCTTTGTGTTCCAGATGACTCCA 59.609 43.478 0.00 0.00 0.00 3.86
2317 2332 4.042062 TCTTTGTGTTCCAGATGACTCCAT 59.958 41.667 0.00 0.00 35.29 3.41
2318 2333 4.371624 TTGTGTTCCAGATGACTCCATT 57.628 40.909 0.00 0.00 32.09 3.16
2319 2334 3.678289 TGTGTTCCAGATGACTCCATTG 58.322 45.455 0.00 0.00 32.09 2.82
2320 2335 3.327464 TGTGTTCCAGATGACTCCATTGA 59.673 43.478 0.00 0.00 32.09 2.57
2321 2336 3.686726 GTGTTCCAGATGACTCCATTGAC 59.313 47.826 0.00 0.00 32.09 3.18
2322 2337 3.584406 TGTTCCAGATGACTCCATTGACT 59.416 43.478 0.00 0.00 32.09 3.41
2323 2338 4.187694 GTTCCAGATGACTCCATTGACTC 58.812 47.826 0.00 0.00 32.09 3.36
2324 2339 3.717576 TCCAGATGACTCCATTGACTCT 58.282 45.455 0.00 0.00 32.09 3.24
2325 2340 4.871822 TCCAGATGACTCCATTGACTCTA 58.128 43.478 0.00 0.00 32.09 2.43
2326 2341 5.272402 TCCAGATGACTCCATTGACTCTAA 58.728 41.667 0.00 0.00 32.09 2.10
2327 2342 5.127845 TCCAGATGACTCCATTGACTCTAAC 59.872 44.000 0.00 0.00 32.09 2.34
2328 2343 5.105187 CCAGATGACTCCATTGACTCTAACA 60.105 44.000 0.00 0.00 32.09 2.41
2329 2344 5.809562 CAGATGACTCCATTGACTCTAACAC 59.190 44.000 0.00 0.00 32.09 3.32
2330 2345 4.537135 TGACTCCATTGACTCTAACACC 57.463 45.455 0.00 0.00 0.00 4.16
2331 2346 3.901222 TGACTCCATTGACTCTAACACCA 59.099 43.478 0.00 0.00 0.00 4.17
2332 2347 4.021104 TGACTCCATTGACTCTAACACCAG 60.021 45.833 0.00 0.00 0.00 4.00
2333 2348 3.261897 ACTCCATTGACTCTAACACCAGG 59.738 47.826 0.00 0.00 0.00 4.45
2334 2349 3.515502 CTCCATTGACTCTAACACCAGGA 59.484 47.826 0.00 0.00 0.00 3.86
2335 2350 3.515502 TCCATTGACTCTAACACCAGGAG 59.484 47.826 0.00 0.00 0.00 3.69
2336 2351 3.515502 CCATTGACTCTAACACCAGGAGA 59.484 47.826 0.00 0.00 0.00 3.71
2337 2352 4.382470 CCATTGACTCTAACACCAGGAGAG 60.382 50.000 0.00 0.00 42.08 3.20
2338 2353 2.808919 TGACTCTAACACCAGGAGAGG 58.191 52.381 7.62 0.00 40.91 3.69
2339 2354 1.478916 GACTCTAACACCAGGAGAGGC 59.521 57.143 7.62 0.98 40.91 4.70
2340 2355 1.203187 ACTCTAACACCAGGAGAGGCA 60.203 52.381 7.62 0.00 40.91 4.75
2341 2356 1.205893 CTCTAACACCAGGAGAGGCAC 59.794 57.143 0.00 0.00 34.31 5.01
2342 2357 0.108615 CTAACACCAGGAGAGGCACG 60.109 60.000 0.00 0.00 0.00 5.34
2343 2358 1.541310 TAACACCAGGAGAGGCACGG 61.541 60.000 0.00 0.00 0.00 4.94
2344 2359 3.314331 CACCAGGAGAGGCACGGT 61.314 66.667 0.00 0.00 0.00 4.83
2345 2360 1.982395 CACCAGGAGAGGCACGGTA 60.982 63.158 0.00 0.00 0.00 4.02
2346 2361 1.001760 ACCAGGAGAGGCACGGTAT 59.998 57.895 0.00 0.00 0.00 2.73
2347 2362 1.330655 ACCAGGAGAGGCACGGTATG 61.331 60.000 0.00 0.00 0.00 2.39
2348 2363 1.443407 CAGGAGAGGCACGGTATGG 59.557 63.158 0.00 0.00 0.00 2.74
2349 2364 1.043116 CAGGAGAGGCACGGTATGGA 61.043 60.000 0.00 0.00 0.00 3.41
2350 2365 0.757188 AGGAGAGGCACGGTATGGAG 60.757 60.000 0.00 0.00 0.00 3.86
2351 2366 1.742768 GAGAGGCACGGTATGGAGG 59.257 63.158 0.00 0.00 0.00 4.30
2352 2367 2.109181 GAGGCACGGTATGGAGGC 59.891 66.667 0.00 0.00 0.00 4.70
2353 2368 3.462199 GAGGCACGGTATGGAGGCC 62.462 68.421 0.00 0.00 44.92 5.19
2354 2369 4.564110 GGCACGGTATGGAGGCCC 62.564 72.222 0.00 0.00 38.70 5.80
2369 2384 4.237445 CCCAGAGAGGCATGCTTG 57.763 61.111 18.92 8.43 35.39 4.01
2388 2403 2.447408 CGTTTTACGCGGGATCACA 58.553 52.632 12.47 0.00 33.65 3.58
2389 2404 0.791422 CGTTTTACGCGGGATCACAA 59.209 50.000 12.47 0.00 33.65 3.33
2390 2405 1.395608 CGTTTTACGCGGGATCACAAT 59.604 47.619 12.47 0.00 33.65 2.71
2391 2406 2.159626 CGTTTTACGCGGGATCACAATT 60.160 45.455 12.47 0.00 33.65 2.32
2392 2407 3.062369 CGTTTTACGCGGGATCACAATTA 59.938 43.478 12.47 0.00 33.65 1.40
2393 2408 4.260456 CGTTTTACGCGGGATCACAATTAT 60.260 41.667 12.47 0.00 33.65 1.28
2394 2409 5.202640 GTTTTACGCGGGATCACAATTATC 58.797 41.667 12.47 0.00 0.00 1.75
2395 2410 2.613026 ACGCGGGATCACAATTATCA 57.387 45.000 12.47 0.00 0.00 2.15
2396 2411 2.210116 ACGCGGGATCACAATTATCAC 58.790 47.619 12.47 0.00 0.00 3.06
2397 2412 2.209273 CGCGGGATCACAATTATCACA 58.791 47.619 0.00 0.00 0.00 3.58
2398 2413 2.221749 CGCGGGATCACAATTATCACAG 59.778 50.000 0.00 0.00 0.00 3.66
2399 2414 2.549754 GCGGGATCACAATTATCACAGG 59.450 50.000 0.00 0.00 0.00 4.00
2400 2415 2.549754 CGGGATCACAATTATCACAGGC 59.450 50.000 0.00 0.00 0.00 4.85
2401 2416 3.554934 GGGATCACAATTATCACAGGCA 58.445 45.455 0.00 0.00 0.00 4.75
2402 2417 3.316308 GGGATCACAATTATCACAGGCAC 59.684 47.826 0.00 0.00 0.00 5.01
2403 2418 3.002656 GGATCACAATTATCACAGGCACG 59.997 47.826 0.00 0.00 0.00 5.34
2404 2419 2.355197 TCACAATTATCACAGGCACGG 58.645 47.619 0.00 0.00 0.00 4.94
2405 2420 1.401552 CACAATTATCACAGGCACGGG 59.598 52.381 0.00 0.00 0.00 5.28
2406 2421 0.381801 CAATTATCACAGGCACGGGC 59.618 55.000 0.00 0.00 40.13 6.13
2407 2422 0.034574 AATTATCACAGGCACGGGCA 60.035 50.000 13.89 0.00 43.71 5.36
2408 2423 0.183492 ATTATCACAGGCACGGGCAT 59.817 50.000 13.89 0.00 43.71 4.40
2420 2435 3.183259 GGGCATGAAGCGCGTAAA 58.817 55.556 8.43 0.00 46.66 2.01
2421 2436 1.062525 GGGCATGAAGCGCGTAAAG 59.937 57.895 8.43 0.00 46.66 1.85
2422 2437 2.322999 GGGCATGAAGCGCGTAAAGG 62.323 60.000 8.43 0.00 46.66 3.11
2423 2438 1.583709 GCATGAAGCGCGTAAAGGC 60.584 57.895 8.43 0.00 0.00 4.35
2424 2439 1.793581 CATGAAGCGCGTAAAGGCA 59.206 52.632 8.43 0.00 0.00 4.75
2425 2440 0.378257 CATGAAGCGCGTAAAGGCAT 59.622 50.000 8.43 0.00 0.00 4.40
2426 2441 0.378257 ATGAAGCGCGTAAAGGCATG 59.622 50.000 8.43 0.00 0.00 4.06
2427 2442 0.672091 TGAAGCGCGTAAAGGCATGA 60.672 50.000 8.43 0.00 0.00 3.07
2428 2443 0.657840 GAAGCGCGTAAAGGCATGAT 59.342 50.000 8.43 0.00 0.00 2.45
2429 2444 0.657840 AAGCGCGTAAAGGCATGATC 59.342 50.000 8.43 0.00 0.00 2.92
2430 2445 1.083401 GCGCGTAAAGGCATGATCG 60.083 57.895 8.43 0.00 0.00 3.69
2431 2446 1.564622 CGCGTAAAGGCATGATCGG 59.435 57.895 0.00 0.00 0.00 4.18
2432 2447 1.151777 CGCGTAAAGGCATGATCGGT 61.152 55.000 0.00 0.00 0.00 4.69
2433 2448 0.304705 GCGTAAAGGCATGATCGGTG 59.695 55.000 0.00 0.00 0.00 4.94
2434 2449 0.937304 CGTAAAGGCATGATCGGTGG 59.063 55.000 0.00 0.00 0.00 4.61
2435 2450 1.742411 CGTAAAGGCATGATCGGTGGT 60.742 52.381 0.00 0.00 0.00 4.16
2436 2451 2.482316 CGTAAAGGCATGATCGGTGGTA 60.482 50.000 0.00 0.00 0.00 3.25
2437 2452 3.740115 GTAAAGGCATGATCGGTGGTAT 58.260 45.455 0.00 0.00 0.00 2.73
2438 2453 3.297134 AAAGGCATGATCGGTGGTATT 57.703 42.857 0.00 0.00 0.00 1.89
2439 2454 4.431416 AAAGGCATGATCGGTGGTATTA 57.569 40.909 0.00 0.00 0.00 0.98
2440 2455 3.402628 AGGCATGATCGGTGGTATTAC 57.597 47.619 0.00 0.00 0.00 1.89
2441 2456 2.703536 AGGCATGATCGGTGGTATTACA 59.296 45.455 0.00 0.00 0.00 2.41
2442 2457 3.327757 AGGCATGATCGGTGGTATTACAT 59.672 43.478 0.00 0.00 0.00 2.29
2443 2458 4.530553 AGGCATGATCGGTGGTATTACATA 59.469 41.667 0.00 0.00 0.00 2.29
2444 2459 4.870426 GGCATGATCGGTGGTATTACATAG 59.130 45.833 0.00 0.00 0.00 2.23
2445 2460 5.337250 GGCATGATCGGTGGTATTACATAGA 60.337 44.000 0.00 0.00 0.00 1.98
2446 2461 5.807520 GCATGATCGGTGGTATTACATAGAG 59.192 44.000 0.00 0.00 0.00 2.43
2447 2462 6.572509 GCATGATCGGTGGTATTACATAGAGT 60.573 42.308 0.00 0.00 0.00 3.24
2448 2463 6.570672 TGATCGGTGGTATTACATAGAGTC 57.429 41.667 0.00 0.00 0.00 3.36
2449 2464 6.066032 TGATCGGTGGTATTACATAGAGTCA 58.934 40.000 0.00 0.00 0.00 3.41
2450 2465 5.762825 TCGGTGGTATTACATAGAGTCAC 57.237 43.478 0.00 0.00 0.00 3.67
2451 2466 4.274214 TCGGTGGTATTACATAGAGTCACG 59.726 45.833 0.00 0.00 0.00 4.35
2452 2467 4.296690 GGTGGTATTACATAGAGTCACGC 58.703 47.826 0.00 0.00 0.00 5.34
2453 2468 4.037684 GGTGGTATTACATAGAGTCACGCT 59.962 45.833 0.00 0.00 0.00 5.07
2454 2469 5.240183 GGTGGTATTACATAGAGTCACGCTA 59.760 44.000 0.00 0.00 0.00 4.26
2455 2470 6.238842 GGTGGTATTACATAGAGTCACGCTAA 60.239 42.308 0.00 0.00 0.00 3.09
2456 2471 6.636044 GTGGTATTACATAGAGTCACGCTAAC 59.364 42.308 0.00 0.00 0.00 2.34
2457 2472 6.148264 GGTATTACATAGAGTCACGCTAACC 58.852 44.000 0.00 0.00 0.00 2.85
2458 2473 6.016443 GGTATTACATAGAGTCACGCTAACCT 60.016 42.308 0.00 0.00 0.00 3.50
2459 2474 7.173907 GGTATTACATAGAGTCACGCTAACCTA 59.826 40.741 0.00 0.00 0.00 3.08
2460 2475 7.578310 ATTACATAGAGTCACGCTAACCTAA 57.422 36.000 0.00 0.00 0.00 2.69
2461 2476 5.502153 ACATAGAGTCACGCTAACCTAAG 57.498 43.478 0.00 0.00 0.00 2.18
2462 2477 4.948621 ACATAGAGTCACGCTAACCTAAGT 59.051 41.667 0.00 0.00 0.00 2.24
2463 2478 5.066246 ACATAGAGTCACGCTAACCTAAGTC 59.934 44.000 0.00 0.00 0.00 3.01
2464 2479 3.688235 AGAGTCACGCTAACCTAAGTCT 58.312 45.455 0.00 0.00 0.00 3.24
2465 2480 4.080687 AGAGTCACGCTAACCTAAGTCTT 58.919 43.478 0.00 0.00 0.00 3.01
2466 2481 5.251764 AGAGTCACGCTAACCTAAGTCTTA 58.748 41.667 0.00 0.00 0.00 2.10
2467 2482 5.123661 AGAGTCACGCTAACCTAAGTCTTAC 59.876 44.000 0.00 0.00 0.00 2.34
2468 2483 4.094212 GTCACGCTAACCTAAGTCTTACG 58.906 47.826 0.00 0.00 0.00 3.18
2469 2484 2.850647 CACGCTAACCTAAGTCTTACGC 59.149 50.000 0.00 0.00 0.00 4.42
2470 2485 2.489329 ACGCTAACCTAAGTCTTACGCA 59.511 45.455 0.00 0.00 0.00 5.24
2471 2486 2.850647 CGCTAACCTAAGTCTTACGCAC 59.149 50.000 0.00 0.00 0.00 5.34
2472 2487 3.671433 CGCTAACCTAAGTCTTACGCACA 60.671 47.826 0.00 0.00 0.00 4.57
2473 2488 3.858238 GCTAACCTAAGTCTTACGCACAG 59.142 47.826 0.00 0.00 0.00 3.66
2474 2489 2.365408 ACCTAAGTCTTACGCACAGC 57.635 50.000 0.00 0.00 0.00 4.40
2475 2490 1.067071 ACCTAAGTCTTACGCACAGCC 60.067 52.381 0.00 0.00 0.00 4.85
2476 2491 1.067142 CCTAAGTCTTACGCACAGCCA 60.067 52.381 0.00 0.00 0.00 4.75
2477 2492 1.993370 CTAAGTCTTACGCACAGCCAC 59.007 52.381 0.00 0.00 0.00 5.01
2478 2493 0.944311 AAGTCTTACGCACAGCCACG 60.944 55.000 0.00 0.00 0.00 4.94
2479 2494 2.048597 TCTTACGCACAGCCACGG 60.049 61.111 0.00 0.00 0.00 4.94
2480 2495 3.118454 CTTACGCACAGCCACGGG 61.118 66.667 0.00 0.00 0.00 5.28
2490 2505 2.047560 GCCACGGGCGTTTACTCT 60.048 61.111 0.00 0.00 39.62 3.24
2491 2506 2.388232 GCCACGGGCGTTTACTCTG 61.388 63.158 0.00 0.00 39.62 3.35
2492 2507 1.005394 CCACGGGCGTTTACTCTGT 60.005 57.895 0.00 0.00 0.00 3.41
2493 2508 1.289109 CCACGGGCGTTTACTCTGTG 61.289 60.000 0.00 0.00 37.48 3.66
2494 2509 0.319211 CACGGGCGTTTACTCTGTGA 60.319 55.000 0.00 0.00 39.42 3.58
2495 2510 0.038526 ACGGGCGTTTACTCTGTGAG 60.039 55.000 0.00 0.00 35.52 3.51
2496 2511 0.736325 CGGGCGTTTACTCTGTGAGG 60.736 60.000 0.00 0.00 33.35 3.86
2497 2512 1.019805 GGGCGTTTACTCTGTGAGGC 61.020 60.000 0.00 0.00 33.35 4.70
2498 2513 0.320421 GGCGTTTACTCTGTGAGGCA 60.320 55.000 0.00 0.00 33.35 4.75
2499 2514 0.790814 GCGTTTACTCTGTGAGGCAC 59.209 55.000 0.00 0.00 33.35 5.01
2500 2515 1.060713 CGTTTACTCTGTGAGGCACG 58.939 55.000 0.00 1.40 37.14 5.34
2501 2516 1.429463 GTTTACTCTGTGAGGCACGG 58.571 55.000 0.00 0.00 41.65 4.94
2502 2517 1.000506 GTTTACTCTGTGAGGCACGGA 59.999 52.381 8.62 8.62 45.99 4.69
2506 2521 1.296392 TCTGTGAGGCACGGAATGG 59.704 57.895 6.62 0.00 45.32 3.16
2514 2529 2.528797 GCACGGAATGGCCTATACG 58.471 57.895 3.32 7.98 0.00 3.06
2515 2530 0.032952 GCACGGAATGGCCTATACGA 59.967 55.000 18.16 0.00 0.00 3.43
2516 2531 1.935300 GCACGGAATGGCCTATACGAG 60.935 57.143 18.16 11.99 0.00 4.18
2517 2532 1.611977 CACGGAATGGCCTATACGAGA 59.388 52.381 18.16 0.00 0.00 4.04
2518 2533 1.887198 ACGGAATGGCCTATACGAGAG 59.113 52.381 18.16 0.00 0.00 3.20
2519 2534 2.160205 CGGAATGGCCTATACGAGAGA 58.840 52.381 3.32 0.00 0.00 3.10
2520 2535 2.095161 CGGAATGGCCTATACGAGAGAC 60.095 54.545 3.32 0.00 0.00 3.36
2521 2536 2.231721 GGAATGGCCTATACGAGAGACC 59.768 54.545 3.32 0.00 0.00 3.85
2522 2537 1.926108 ATGGCCTATACGAGAGACCC 58.074 55.000 3.32 0.00 0.00 4.46
2523 2538 0.851469 TGGCCTATACGAGAGACCCT 59.149 55.000 3.32 0.00 0.00 4.34
2524 2539 1.249407 GGCCTATACGAGAGACCCTG 58.751 60.000 0.00 0.00 0.00 4.45
2525 2540 1.479021 GGCCTATACGAGAGACCCTGT 60.479 57.143 0.00 0.00 0.00 4.00
2526 2541 2.308690 GCCTATACGAGAGACCCTGTT 58.691 52.381 0.00 0.00 0.00 3.16
2527 2542 2.694109 GCCTATACGAGAGACCCTGTTT 59.306 50.000 0.00 0.00 0.00 2.83
2528 2543 3.132467 GCCTATACGAGAGACCCTGTTTT 59.868 47.826 0.00 0.00 0.00 2.43
2529 2544 4.382793 GCCTATACGAGAGACCCTGTTTTT 60.383 45.833 0.00 0.00 0.00 1.94
2530 2545 5.163478 GCCTATACGAGAGACCCTGTTTTTA 60.163 44.000 0.00 0.00 0.00 1.52
2531 2546 6.628844 GCCTATACGAGAGACCCTGTTTTTAA 60.629 42.308 0.00 0.00 0.00 1.52
2532 2547 7.325694 CCTATACGAGAGACCCTGTTTTTAAA 58.674 38.462 0.00 0.00 0.00 1.52
2533 2548 7.820872 CCTATACGAGAGACCCTGTTTTTAAAA 59.179 37.037 0.00 0.00 0.00 1.52
2534 2549 7.668525 ATACGAGAGACCCTGTTTTTAAAAG 57.331 36.000 0.14 0.00 0.00 2.27
2535 2550 4.275196 ACGAGAGACCCTGTTTTTAAAAGC 59.725 41.667 7.76 7.76 0.00 3.51
2536 2551 4.610680 CGAGAGACCCTGTTTTTAAAAGCG 60.611 45.833 9.79 5.34 0.00 4.68
2537 2552 4.204799 AGAGACCCTGTTTTTAAAAGCGT 58.795 39.130 9.79 2.61 0.00 5.07
2538 2553 5.370679 AGAGACCCTGTTTTTAAAAGCGTA 58.629 37.500 9.79 0.00 0.00 4.42
2539 2554 6.002082 AGAGACCCTGTTTTTAAAAGCGTAT 58.998 36.000 9.79 0.38 0.00 3.06
2540 2555 6.489022 AGAGACCCTGTTTTTAAAAGCGTATT 59.511 34.615 9.79 0.00 0.00 1.89
2541 2556 7.013942 AGAGACCCTGTTTTTAAAAGCGTATTT 59.986 33.333 9.79 0.00 0.00 1.40
2542 2557 7.143340 AGACCCTGTTTTTAAAAGCGTATTTC 58.857 34.615 9.79 3.64 0.00 2.17
2543 2558 6.218019 ACCCTGTTTTTAAAAGCGTATTTCC 58.782 36.000 9.79 0.00 0.00 3.13
2544 2559 6.041182 ACCCTGTTTTTAAAAGCGTATTTCCT 59.959 34.615 9.79 0.00 0.00 3.36
2545 2560 6.926826 CCCTGTTTTTAAAAGCGTATTTCCTT 59.073 34.615 9.79 0.00 0.00 3.36
2546 2561 7.095816 CCCTGTTTTTAAAAGCGTATTTCCTTG 60.096 37.037 9.79 0.00 0.00 3.61
2547 2562 7.436970 CCTGTTTTTAAAAGCGTATTTCCTTGT 59.563 33.333 9.79 0.00 0.00 3.16
2548 2563 9.453325 CTGTTTTTAAAAGCGTATTTCCTTGTA 57.547 29.630 9.79 0.00 0.00 2.41
2549 2564 9.235537 TGTTTTTAAAAGCGTATTTCCTTGTAC 57.764 29.630 9.79 0.00 0.00 2.90
2550 2565 8.411928 GTTTTTAAAAGCGTATTTCCTTGTACG 58.588 33.333 0.14 0.97 44.68 3.67
2551 2566 4.673534 AAAAGCGTATTTCCTTGTACGG 57.326 40.909 6.99 0.00 42.76 4.02
2552 2567 2.304751 AGCGTATTTCCTTGTACGGG 57.695 50.000 6.99 0.00 42.76 5.28
2553 2568 0.654160 GCGTATTTCCTTGTACGGGC 59.346 55.000 6.99 0.00 42.76 6.13
2554 2569 2.008045 GCGTATTTCCTTGTACGGGCA 61.008 52.381 6.99 0.00 42.76 5.36
2555 2570 2.557317 CGTATTTCCTTGTACGGGCAT 58.443 47.619 0.38 0.00 39.82 4.40
2556 2571 3.719924 CGTATTTCCTTGTACGGGCATA 58.280 45.455 0.38 0.00 39.82 3.14
2557 2572 4.121317 CGTATTTCCTTGTACGGGCATAA 58.879 43.478 0.38 0.00 39.82 1.90
2558 2573 4.210537 CGTATTTCCTTGTACGGGCATAAG 59.789 45.833 0.38 0.00 39.82 1.73
2559 2574 2.032680 TTCCTTGTACGGGCATAAGC 57.967 50.000 0.38 0.00 41.10 3.09
2560 2575 0.906066 TCCTTGTACGGGCATAAGCA 59.094 50.000 0.00 0.00 44.61 3.91
2561 2576 1.014352 CCTTGTACGGGCATAAGCAC 58.986 55.000 0.00 0.00 44.61 4.40
2800 2815 0.605319 TCCATCAACTCCAACGGCAC 60.605 55.000 0.00 0.00 0.00 5.01
2901 2918 2.746142 CGGGTCAGCACATGGAATATGT 60.746 50.000 0.00 0.00 0.00 2.29
3264 3284 3.181443 ACTTTTCCCCACAAGACTCGATT 60.181 43.478 0.00 0.00 0.00 3.34
3265 3285 2.472695 TTCCCCACAAGACTCGATTG 57.527 50.000 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 42 1.070105 AAGTACTTCAACGCCGCCA 59.930 52.632 1.12 0.00 0.00 5.69
44 48 3.000925 ACAACGAAGCAAGTACTTCAACG 59.999 43.478 4.77 11.44 45.22 4.10
53 57 1.134175 CCCAACAACAACGAAGCAAGT 59.866 47.619 0.00 0.00 0.00 3.16
70 74 1.285373 ACAACACAAAGTACCCACCCA 59.715 47.619 0.00 0.00 0.00 4.51
120 124 1.541672 CCAACCACCCTCCCACTTT 59.458 57.895 0.00 0.00 0.00 2.66
181 185 4.021807 GGTTCATTACACGGACCCAAATTT 60.022 41.667 0.00 0.00 0.00 1.82
190 194 3.325425 TCCTCAAAGGTTCATTACACGGA 59.675 43.478 0.00 0.00 36.53 4.69
198 202 3.848975 ACAGGATCTCCTCAAAGGTTCAT 59.151 43.478 0.00 0.00 46.65 2.57
206 210 2.564504 CACTCACACAGGATCTCCTCAA 59.435 50.000 0.00 0.00 46.65 3.02
207 211 2.174360 CACTCACACAGGATCTCCTCA 58.826 52.381 0.00 0.00 46.65 3.86
217 221 3.303329 CGAAACATTCCACACTCACACAG 60.303 47.826 0.00 0.00 0.00 3.66
270 274 4.018779 CCATTTTTCCCACCTCCACTACTA 60.019 45.833 0.00 0.00 0.00 1.82
287 291 4.772100 AGACGGTTCCATCATTTCCATTTT 59.228 37.500 0.00 0.00 0.00 1.82
311 315 7.490000 ACTAAAATCAGACCGTCGAAGATTAT 58.510 34.615 13.60 5.82 40.67 1.28
364 370 6.531948 GCACTTCTATTAAGATGGTATAGCGG 59.468 42.308 0.00 0.00 32.48 5.52
372 385 3.743396 GCCTCGCACTTCTATTAAGATGG 59.257 47.826 0.00 0.00 32.48 3.51
389 402 2.738521 CTGGTGTTCCGTGCCTCG 60.739 66.667 0.00 0.00 36.30 4.63
477 490 2.123854 CAGATGCATGCCCCTGCT 60.124 61.111 16.68 2.09 42.75 4.24
554 567 1.293179 CATCACTCTCACGTGCCCA 59.707 57.895 11.67 0.00 34.92 5.36
652 665 1.081906 CACGACCAATGCTGCACAC 60.082 57.895 3.57 0.00 0.00 3.82
721 734 4.271049 CCGTCAAATCGTCTGATTAAGCAT 59.729 41.667 0.00 0.00 44.02 3.79
731 744 0.034896 AGGCAACCGTCAAATCGTCT 59.965 50.000 0.00 0.00 37.17 4.18
749 762 2.187599 CTCGCGGTTGGCAGGAAAAG 62.188 60.000 6.13 0.00 43.84 2.27
756 769 3.736100 CAATGCTCGCGGTTGGCA 61.736 61.111 6.13 12.63 43.84 4.92
758 771 4.481112 GGCAATGCTCGCGGTTGG 62.481 66.667 6.13 0.00 0.00 3.77
794 807 3.337889 GCTCGTCGTTGCTGTGCA 61.338 61.111 5.91 0.00 36.47 4.57
818 831 1.115467 CGTGGTAGAGAGGGCAGAAT 58.885 55.000 0.00 0.00 0.00 2.40
822 835 2.044555 CGTCGTGGTAGAGAGGGCA 61.045 63.158 0.00 0.00 0.00 5.36
829 842 3.129502 CGGCCTCGTCGTGGTAGA 61.130 66.667 14.41 0.00 0.00 2.59
987 1001 1.153449 CGCCATTACGCTCCTCCAA 60.153 57.895 0.00 0.00 0.00 3.53
1024 1038 3.299977 CGTCTCACCACGGGGACA 61.300 66.667 12.96 0.00 36.07 4.02
1055 1069 0.963225 TTGAACATCGTCGACCTCCA 59.037 50.000 10.58 0.00 0.00 3.86
1074 1088 2.203788 TGCTTCTGACCGGGGACT 60.204 61.111 6.32 0.00 0.00 3.85
1158 1172 0.465705 CGGCTTCCTCAGGATTGCTA 59.534 55.000 16.09 0.00 33.98 3.49
1333 1347 2.437281 TGGTTCACCATTTTGTTGCCAT 59.563 40.909 0.00 0.00 42.01 4.40
1393 1407 5.799827 AATCAAATTTCCGGGTGAAAAGA 57.200 34.783 0.00 0.00 45.67 2.52
1469 1483 7.874940 TGGTGAGTCAAGTTCAAAATCTATTG 58.125 34.615 0.00 0.00 0.00 1.90
1563 1577 4.413087 ACAGAAAGTACGCTAGAACATCG 58.587 43.478 0.00 0.00 0.00 3.84
1740 1754 6.690957 CACGAAAACATTTCAGAAACTGCTAA 59.309 34.615 0.00 0.00 0.00 3.09
1757 1771 7.396419 AGTACGTATAATTCATGCACGAAAAC 58.604 34.615 0.00 0.00 36.51 2.43
1810 1824 4.776837 TGGCACATTTAAGGTGGATTCATT 59.223 37.500 11.69 0.00 36.76 2.57
2088 2103 3.888930 CCCACAGTTTATGGTGTTCAACT 59.111 43.478 0.00 0.00 35.23 3.16
2095 2110 2.025416 TGATCCCCCACAGTTTATGGTG 60.025 50.000 0.00 0.00 35.23 4.17
2166 2181 1.811359 CTCTTCCACGACTCGTAGGTT 59.189 52.381 3.20 0.00 38.32 3.50
2244 2259 6.471146 TCACTAGTATCCGTAGTAAGGATCC 58.529 44.000 19.42 9.89 42.62 3.36
2274 2289 5.196341 AGAGACACAAATGTAGACACGAA 57.804 39.130 0.00 0.00 39.95 3.85
2275 2290 4.848562 AGAGACACAAATGTAGACACGA 57.151 40.909 0.00 0.00 39.95 4.35
2276 2291 5.234329 ACAAAGAGACACAAATGTAGACACG 59.766 40.000 0.00 0.00 39.95 4.49
2277 2292 6.037172 ACACAAAGAGACACAAATGTAGACAC 59.963 38.462 0.00 0.00 39.95 3.67
2278 2293 6.112734 ACACAAAGAGACACAAATGTAGACA 58.887 36.000 0.00 0.00 39.95 3.41
2279 2294 6.604735 ACACAAAGAGACACAAATGTAGAC 57.395 37.500 0.00 0.00 39.95 2.59
2280 2295 6.260050 GGAACACAAAGAGACACAAATGTAGA 59.740 38.462 0.00 0.00 39.95 2.59
2281 2296 6.038161 TGGAACACAAAGAGACACAAATGTAG 59.962 38.462 0.00 0.00 39.95 2.74
2282 2297 5.883115 TGGAACACAAAGAGACACAAATGTA 59.117 36.000 0.00 0.00 39.95 2.29
2283 2298 4.704540 TGGAACACAAAGAGACACAAATGT 59.295 37.500 0.00 0.00 43.71 2.71
2284 2299 5.066375 TCTGGAACACAAAGAGACACAAATG 59.934 40.000 0.00 0.00 0.00 2.32
2285 2300 5.192927 TCTGGAACACAAAGAGACACAAAT 58.807 37.500 0.00 0.00 0.00 2.32
2286 2301 4.584874 TCTGGAACACAAAGAGACACAAA 58.415 39.130 0.00 0.00 0.00 2.83
2287 2302 4.214986 TCTGGAACACAAAGAGACACAA 57.785 40.909 0.00 0.00 0.00 3.33
2288 2303 3.904800 TCTGGAACACAAAGAGACACA 57.095 42.857 0.00 0.00 0.00 3.72
2289 2304 4.212214 GTCATCTGGAACACAAAGAGACAC 59.788 45.833 0.00 0.00 0.00 3.67
2290 2305 4.101585 AGTCATCTGGAACACAAAGAGACA 59.898 41.667 0.00 0.00 0.00 3.41
2291 2306 4.636249 AGTCATCTGGAACACAAAGAGAC 58.364 43.478 0.00 0.00 0.00 3.36
2292 2307 4.262635 GGAGTCATCTGGAACACAAAGAGA 60.263 45.833 0.00 0.00 0.00 3.10
2293 2308 3.999663 GGAGTCATCTGGAACACAAAGAG 59.000 47.826 0.00 0.00 0.00 2.85
2294 2309 3.390967 TGGAGTCATCTGGAACACAAAGA 59.609 43.478 0.00 0.00 0.00 2.52
2295 2310 3.743521 TGGAGTCATCTGGAACACAAAG 58.256 45.455 0.00 0.00 0.00 2.77
2296 2311 3.855255 TGGAGTCATCTGGAACACAAA 57.145 42.857 0.00 0.00 0.00 2.83
2297 2312 4.074259 CAATGGAGTCATCTGGAACACAA 58.926 43.478 0.00 0.00 32.24 3.33
2298 2313 3.327464 TCAATGGAGTCATCTGGAACACA 59.673 43.478 0.00 0.00 32.24 3.72
2299 2314 3.686726 GTCAATGGAGTCATCTGGAACAC 59.313 47.826 0.00 0.00 32.24 3.32
2300 2315 3.584406 AGTCAATGGAGTCATCTGGAACA 59.416 43.478 0.00 0.00 32.24 3.18
2301 2316 4.081198 AGAGTCAATGGAGTCATCTGGAAC 60.081 45.833 7.70 0.00 44.45 3.62
2302 2317 4.099633 AGAGTCAATGGAGTCATCTGGAA 58.900 43.478 7.70 0.00 44.45 3.53
2303 2318 3.717576 AGAGTCAATGGAGTCATCTGGA 58.282 45.455 7.70 0.00 44.45 3.86
2304 2319 5.105187 TGTTAGAGTCAATGGAGTCATCTGG 60.105 44.000 7.70 0.00 44.45 3.86
2305 2320 5.809562 GTGTTAGAGTCAATGGAGTCATCTG 59.190 44.000 7.70 0.00 44.45 2.90
2306 2321 5.105146 GGTGTTAGAGTCAATGGAGTCATCT 60.105 44.000 7.70 0.00 44.45 2.90
2307 2322 5.112686 GGTGTTAGAGTCAATGGAGTCATC 58.887 45.833 7.70 0.00 44.45 2.92
2308 2323 4.532126 TGGTGTTAGAGTCAATGGAGTCAT 59.468 41.667 7.70 0.00 44.45 3.06
2309 2324 3.901222 TGGTGTTAGAGTCAATGGAGTCA 59.099 43.478 7.70 0.00 44.45 3.41
2310 2325 4.499183 CTGGTGTTAGAGTCAATGGAGTC 58.501 47.826 0.00 0.00 42.71 3.36
2311 2326 3.261897 CCTGGTGTTAGAGTCAATGGAGT 59.738 47.826 0.00 0.00 0.00 3.85
2312 2327 3.515502 TCCTGGTGTTAGAGTCAATGGAG 59.484 47.826 0.00 0.00 0.00 3.86
2313 2328 3.515502 CTCCTGGTGTTAGAGTCAATGGA 59.484 47.826 0.00 0.00 0.00 3.41
2314 2329 3.515502 TCTCCTGGTGTTAGAGTCAATGG 59.484 47.826 0.00 0.00 0.00 3.16
2315 2330 4.382470 CCTCTCCTGGTGTTAGAGTCAATG 60.382 50.000 8.75 0.00 35.93 2.82
2316 2331 3.772025 CCTCTCCTGGTGTTAGAGTCAAT 59.228 47.826 8.75 0.00 35.93 2.57
2317 2332 3.165875 CCTCTCCTGGTGTTAGAGTCAA 58.834 50.000 8.75 0.00 35.93 3.18
2318 2333 2.808919 CCTCTCCTGGTGTTAGAGTCA 58.191 52.381 8.75 0.00 35.93 3.41
2319 2334 1.478916 GCCTCTCCTGGTGTTAGAGTC 59.521 57.143 8.75 0.00 35.93 3.36
2320 2335 1.203187 TGCCTCTCCTGGTGTTAGAGT 60.203 52.381 8.75 0.00 35.93 3.24
2321 2336 1.205893 GTGCCTCTCCTGGTGTTAGAG 59.794 57.143 3.71 3.71 37.17 2.43
2322 2337 1.267121 GTGCCTCTCCTGGTGTTAGA 58.733 55.000 0.00 0.00 0.00 2.10
2323 2338 0.108615 CGTGCCTCTCCTGGTGTTAG 60.109 60.000 0.00 0.00 0.00 2.34
2324 2339 1.541310 CCGTGCCTCTCCTGGTGTTA 61.541 60.000 0.00 0.00 0.00 2.41
2325 2340 2.743718 CGTGCCTCTCCTGGTGTT 59.256 61.111 0.00 0.00 0.00 3.32
2326 2341 2.725127 TACCGTGCCTCTCCTGGTGT 62.725 60.000 0.00 0.00 34.18 4.16
2327 2342 1.330655 ATACCGTGCCTCTCCTGGTG 61.331 60.000 0.00 0.00 34.18 4.17
2328 2343 1.001760 ATACCGTGCCTCTCCTGGT 59.998 57.895 0.00 0.00 36.72 4.00
2329 2344 1.443407 CATACCGTGCCTCTCCTGG 59.557 63.158 0.00 0.00 0.00 4.45
2330 2345 1.043116 TCCATACCGTGCCTCTCCTG 61.043 60.000 0.00 0.00 0.00 3.86
2331 2346 0.757188 CTCCATACCGTGCCTCTCCT 60.757 60.000 0.00 0.00 0.00 3.69
2332 2347 1.742768 CTCCATACCGTGCCTCTCC 59.257 63.158 0.00 0.00 0.00 3.71
2333 2348 1.742768 CCTCCATACCGTGCCTCTC 59.257 63.158 0.00 0.00 0.00 3.20
2334 2349 2.435693 GCCTCCATACCGTGCCTCT 61.436 63.158 0.00 0.00 0.00 3.69
2335 2350 2.109181 GCCTCCATACCGTGCCTC 59.891 66.667 0.00 0.00 0.00 4.70
2336 2351 3.480133 GGCCTCCATACCGTGCCT 61.480 66.667 0.00 0.00 39.05 4.75
2337 2352 4.564110 GGGCCTCCATACCGTGCC 62.564 72.222 0.84 0.00 41.42 5.01
2338 2353 3.757248 CTGGGCCTCCATACCGTGC 62.757 68.421 4.53 0.00 43.11 5.34
2339 2354 2.032860 CTCTGGGCCTCCATACCGTG 62.033 65.000 4.53 0.00 43.11 4.94
2340 2355 1.762460 CTCTGGGCCTCCATACCGT 60.762 63.158 4.53 0.00 43.11 4.83
2341 2356 1.457643 TCTCTGGGCCTCCATACCG 60.458 63.158 4.53 0.00 43.11 4.02
2342 2357 1.124477 CCTCTCTGGGCCTCCATACC 61.124 65.000 4.53 0.00 43.11 2.73
2343 2358 1.763546 GCCTCTCTGGGCCTCCATAC 61.764 65.000 4.53 0.00 45.92 2.39
2344 2359 1.460305 GCCTCTCTGGGCCTCCATA 60.460 63.158 4.53 0.00 45.92 2.74
2345 2360 2.771762 GCCTCTCTGGGCCTCCAT 60.772 66.667 4.53 0.00 45.92 3.41
2352 2367 4.237445 CAAGCATGCCTCTCTGGG 57.763 61.111 15.66 0.00 36.00 4.45
2370 2385 0.791422 TTGTGATCCCGCGTAAAACG 59.209 50.000 4.92 0.00 45.88 3.60
2371 2386 3.481112 AATTGTGATCCCGCGTAAAAC 57.519 42.857 4.92 0.00 0.00 2.43
2372 2387 4.876679 TGATAATTGTGATCCCGCGTAAAA 59.123 37.500 4.92 0.00 0.00 1.52
2373 2388 4.271533 GTGATAATTGTGATCCCGCGTAAA 59.728 41.667 4.92 0.00 0.00 2.01
2374 2389 3.805422 GTGATAATTGTGATCCCGCGTAA 59.195 43.478 4.92 0.00 0.00 3.18
2375 2390 3.181474 TGTGATAATTGTGATCCCGCGTA 60.181 43.478 4.92 0.00 0.00 4.42
2376 2391 2.210116 GTGATAATTGTGATCCCGCGT 58.790 47.619 4.92 0.00 0.00 6.01
2377 2392 2.209273 TGTGATAATTGTGATCCCGCG 58.791 47.619 0.00 0.00 0.00 6.46
2378 2393 2.549754 CCTGTGATAATTGTGATCCCGC 59.450 50.000 0.00 0.00 0.00 6.13
2379 2394 2.549754 GCCTGTGATAATTGTGATCCCG 59.450 50.000 0.00 0.00 0.00 5.14
2380 2395 3.316308 GTGCCTGTGATAATTGTGATCCC 59.684 47.826 0.00 0.00 0.00 3.85
2381 2396 3.002656 CGTGCCTGTGATAATTGTGATCC 59.997 47.826 0.00 0.00 0.00 3.36
2382 2397 3.002656 CCGTGCCTGTGATAATTGTGATC 59.997 47.826 0.00 0.00 0.00 2.92
2383 2398 2.945008 CCGTGCCTGTGATAATTGTGAT 59.055 45.455 0.00 0.00 0.00 3.06
2384 2399 2.355197 CCGTGCCTGTGATAATTGTGA 58.645 47.619 0.00 0.00 0.00 3.58
2385 2400 1.401552 CCCGTGCCTGTGATAATTGTG 59.598 52.381 0.00 0.00 0.00 3.33
2386 2401 1.750193 CCCGTGCCTGTGATAATTGT 58.250 50.000 0.00 0.00 0.00 2.71
2387 2402 0.381801 GCCCGTGCCTGTGATAATTG 59.618 55.000 0.00 0.00 0.00 2.32
2388 2403 0.034574 TGCCCGTGCCTGTGATAATT 60.035 50.000 0.00 0.00 36.33 1.40
2389 2404 0.183492 ATGCCCGTGCCTGTGATAAT 59.817 50.000 0.00 0.00 36.33 1.28
2390 2405 0.747644 CATGCCCGTGCCTGTGATAA 60.748 55.000 0.00 0.00 36.33 1.75
2391 2406 1.153188 CATGCCCGTGCCTGTGATA 60.153 57.895 0.00 0.00 36.33 2.15
2392 2407 2.438975 CATGCCCGTGCCTGTGAT 60.439 61.111 0.00 0.00 36.33 3.06
2393 2408 3.189376 TTCATGCCCGTGCCTGTGA 62.189 57.895 0.00 0.00 35.00 3.58
2394 2409 2.672651 TTCATGCCCGTGCCTGTG 60.673 61.111 0.00 0.00 35.00 3.66
2395 2410 2.360350 CTTCATGCCCGTGCCTGT 60.360 61.111 0.00 0.00 35.00 4.00
2396 2411 3.818787 GCTTCATGCCCGTGCCTG 61.819 66.667 0.00 0.00 36.33 4.85
2403 2418 1.062525 CTTTACGCGCTTCATGCCC 59.937 57.895 5.73 0.00 38.78 5.36
2404 2419 1.062525 CCTTTACGCGCTTCATGCC 59.937 57.895 5.73 0.00 38.78 4.40
2405 2420 1.583709 GCCTTTACGCGCTTCATGC 60.584 57.895 5.73 0.00 38.57 4.06
2406 2421 0.378257 ATGCCTTTACGCGCTTCATG 59.622 50.000 5.73 0.00 0.00 3.07
2407 2422 0.378257 CATGCCTTTACGCGCTTCAT 59.622 50.000 5.73 0.00 0.00 2.57
2408 2423 0.672091 TCATGCCTTTACGCGCTTCA 60.672 50.000 5.73 0.00 0.00 3.02
2409 2424 0.657840 ATCATGCCTTTACGCGCTTC 59.342 50.000 5.73 0.00 0.00 3.86
2410 2425 0.657840 GATCATGCCTTTACGCGCTT 59.342 50.000 5.73 0.00 0.00 4.68
2411 2426 1.490693 CGATCATGCCTTTACGCGCT 61.491 55.000 5.73 0.00 0.00 5.92
2412 2427 1.083401 CGATCATGCCTTTACGCGC 60.083 57.895 5.73 0.00 0.00 6.86
2413 2428 1.151777 ACCGATCATGCCTTTACGCG 61.152 55.000 3.53 3.53 0.00 6.01
2414 2429 0.304705 CACCGATCATGCCTTTACGC 59.695 55.000 0.00 0.00 0.00 4.42
2415 2430 0.937304 CCACCGATCATGCCTTTACG 59.063 55.000 0.00 0.00 0.00 3.18
2416 2431 2.038387 ACCACCGATCATGCCTTTAC 57.962 50.000 0.00 0.00 0.00 2.01
2417 2432 4.431416 AATACCACCGATCATGCCTTTA 57.569 40.909 0.00 0.00 0.00 1.85
2418 2433 3.297134 AATACCACCGATCATGCCTTT 57.703 42.857 0.00 0.00 0.00 3.11
2419 2434 3.135712 TGTAATACCACCGATCATGCCTT 59.864 43.478 0.00 0.00 0.00 4.35
2420 2435 2.703536 TGTAATACCACCGATCATGCCT 59.296 45.455 0.00 0.00 0.00 4.75
2421 2436 3.120321 TGTAATACCACCGATCATGCC 57.880 47.619 0.00 0.00 0.00 4.40
2422 2437 5.720202 TCTATGTAATACCACCGATCATGC 58.280 41.667 0.00 0.00 0.00 4.06
2423 2438 6.925211 ACTCTATGTAATACCACCGATCATG 58.075 40.000 0.00 0.00 0.00 3.07
2424 2439 6.719829 TGACTCTATGTAATACCACCGATCAT 59.280 38.462 0.00 0.00 0.00 2.45
2425 2440 6.016527 GTGACTCTATGTAATACCACCGATCA 60.017 42.308 0.00 0.00 0.00 2.92
2426 2441 6.380190 GTGACTCTATGTAATACCACCGATC 58.620 44.000 0.00 0.00 0.00 3.69
2427 2442 5.048921 CGTGACTCTATGTAATACCACCGAT 60.049 44.000 0.00 0.00 0.00 4.18
2428 2443 4.274214 CGTGACTCTATGTAATACCACCGA 59.726 45.833 0.00 0.00 0.00 4.69
2429 2444 4.534168 CGTGACTCTATGTAATACCACCG 58.466 47.826 0.00 0.00 0.00 4.94
2430 2445 4.037684 AGCGTGACTCTATGTAATACCACC 59.962 45.833 0.00 0.00 0.00 4.61
2431 2446 5.184340 AGCGTGACTCTATGTAATACCAC 57.816 43.478 0.00 0.00 0.00 4.16
2432 2447 6.238842 GGTTAGCGTGACTCTATGTAATACCA 60.239 42.308 0.00 0.00 0.00 3.25
2433 2448 6.016443 AGGTTAGCGTGACTCTATGTAATACC 60.016 42.308 0.00 0.00 0.00 2.73
2434 2449 6.968250 AGGTTAGCGTGACTCTATGTAATAC 58.032 40.000 0.00 0.00 0.00 1.89
2435 2450 8.681486 TTAGGTTAGCGTGACTCTATGTAATA 57.319 34.615 0.00 0.00 0.00 0.98
2436 2451 7.284944 ACTTAGGTTAGCGTGACTCTATGTAAT 59.715 37.037 0.00 0.00 0.00 1.89
2437 2452 6.600822 ACTTAGGTTAGCGTGACTCTATGTAA 59.399 38.462 0.00 0.00 0.00 2.41
2438 2453 6.118170 ACTTAGGTTAGCGTGACTCTATGTA 58.882 40.000 0.00 0.00 0.00 2.29
2439 2454 4.948621 ACTTAGGTTAGCGTGACTCTATGT 59.051 41.667 0.00 0.00 0.00 2.29
2440 2455 5.297278 AGACTTAGGTTAGCGTGACTCTATG 59.703 44.000 0.00 0.00 0.00 2.23
2441 2456 5.438833 AGACTTAGGTTAGCGTGACTCTAT 58.561 41.667 0.00 0.00 0.00 1.98
2442 2457 4.841422 AGACTTAGGTTAGCGTGACTCTA 58.159 43.478 0.00 0.00 0.00 2.43
2443 2458 3.688235 AGACTTAGGTTAGCGTGACTCT 58.312 45.455 0.00 0.00 0.00 3.24
2444 2459 4.437772 AAGACTTAGGTTAGCGTGACTC 57.562 45.455 0.00 0.00 0.00 3.36
2445 2460 4.142730 CGTAAGACTTAGGTTAGCGTGACT 60.143 45.833 6.74 0.00 43.02 3.41
2446 2461 4.094212 CGTAAGACTTAGGTTAGCGTGAC 58.906 47.826 6.74 0.00 43.02 3.67
2447 2462 3.426695 GCGTAAGACTTAGGTTAGCGTGA 60.427 47.826 14.61 0.00 43.02 4.35
2448 2463 2.850647 GCGTAAGACTTAGGTTAGCGTG 59.149 50.000 14.61 0.00 43.02 5.34
2449 2464 2.489329 TGCGTAAGACTTAGGTTAGCGT 59.511 45.455 14.61 0.00 43.02 5.07
2450 2465 2.850647 GTGCGTAAGACTTAGGTTAGCG 59.149 50.000 14.61 6.55 43.02 4.26
2451 2466 3.841643 TGTGCGTAAGACTTAGGTTAGC 58.158 45.455 14.61 7.77 43.02 3.09
2452 2467 3.858238 GCTGTGCGTAAGACTTAGGTTAG 59.142 47.826 14.61 11.47 43.02 2.34
2453 2468 3.367703 GGCTGTGCGTAAGACTTAGGTTA 60.368 47.826 14.61 4.08 43.02 2.85
2454 2469 2.612221 GGCTGTGCGTAAGACTTAGGTT 60.612 50.000 14.61 0.00 43.02 3.50
2455 2470 1.067071 GGCTGTGCGTAAGACTTAGGT 60.067 52.381 14.61 0.00 43.02 3.08
2456 2471 1.067142 TGGCTGTGCGTAAGACTTAGG 60.067 52.381 10.01 10.01 43.02 2.69
2457 2472 1.993370 GTGGCTGTGCGTAAGACTTAG 59.007 52.381 0.00 0.00 43.02 2.18
2458 2473 1.667756 CGTGGCTGTGCGTAAGACTTA 60.668 52.381 0.00 0.00 43.02 2.24
2459 2474 0.944311 CGTGGCTGTGCGTAAGACTT 60.944 55.000 0.00 0.00 43.02 3.01
2460 2475 1.372997 CGTGGCTGTGCGTAAGACT 60.373 57.895 0.00 0.00 43.02 3.24
2461 2476 2.380410 CCGTGGCTGTGCGTAAGAC 61.380 63.158 0.00 0.00 43.02 3.01
2462 2477 2.048597 CCGTGGCTGTGCGTAAGA 60.049 61.111 0.00 0.00 43.02 2.10
2463 2478 3.118454 CCCGTGGCTGTGCGTAAG 61.118 66.667 0.00 0.00 43.44 2.34
2473 2488 2.047560 AGAGTAAACGCCCGTGGC 60.048 61.111 4.96 4.96 46.75 5.01
2474 2489 1.005394 ACAGAGTAAACGCCCGTGG 60.005 57.895 0.00 0.00 0.00 4.94
2475 2490 0.319211 TCACAGAGTAAACGCCCGTG 60.319 55.000 0.00 0.00 0.00 4.94
2476 2491 0.038526 CTCACAGAGTAAACGCCCGT 60.039 55.000 0.00 0.00 0.00 5.28
2477 2492 0.736325 CCTCACAGAGTAAACGCCCG 60.736 60.000 0.00 0.00 0.00 6.13
2478 2493 1.019805 GCCTCACAGAGTAAACGCCC 61.020 60.000 0.00 0.00 0.00 6.13
2479 2494 0.320421 TGCCTCACAGAGTAAACGCC 60.320 55.000 0.00 0.00 0.00 5.68
2480 2495 0.790814 GTGCCTCACAGAGTAAACGC 59.209 55.000 0.00 0.00 34.08 4.84
2481 2496 1.060713 CGTGCCTCACAGAGTAAACG 58.939 55.000 0.00 0.00 33.40 3.60
2482 2497 1.000506 TCCGTGCCTCACAGAGTAAAC 59.999 52.381 0.00 0.00 33.40 2.01
2483 2498 1.334160 TCCGTGCCTCACAGAGTAAA 58.666 50.000 0.00 0.00 33.40 2.01
2484 2499 1.334160 TTCCGTGCCTCACAGAGTAA 58.666 50.000 0.00 0.00 33.40 2.24
2485 2500 1.204704 CATTCCGTGCCTCACAGAGTA 59.795 52.381 0.00 0.00 33.40 2.59
2486 2501 0.036952 CATTCCGTGCCTCACAGAGT 60.037 55.000 0.00 0.00 33.40 3.24
2487 2502 0.742281 CCATTCCGTGCCTCACAGAG 60.742 60.000 0.00 0.00 33.40 3.35
2488 2503 1.296392 CCATTCCGTGCCTCACAGA 59.704 57.895 0.00 0.00 33.40 3.41
2489 2504 2.401766 GCCATTCCGTGCCTCACAG 61.402 63.158 0.00 0.00 33.40 3.66
2490 2505 2.359850 GCCATTCCGTGCCTCACA 60.360 61.111 0.00 0.00 33.40 3.58
2491 2506 3.134127 GGCCATTCCGTGCCTCAC 61.134 66.667 0.00 0.00 44.46 3.51
2496 2511 0.032952 TCGTATAGGCCATTCCGTGC 59.967 55.000 5.01 0.00 40.77 5.34
2497 2512 1.611977 TCTCGTATAGGCCATTCCGTG 59.388 52.381 5.01 3.02 40.77 4.94
2498 2513 1.887198 CTCTCGTATAGGCCATTCCGT 59.113 52.381 5.01 0.00 40.77 4.69
2499 2514 2.095161 GTCTCTCGTATAGGCCATTCCG 60.095 54.545 5.01 1.42 40.77 4.30
2500 2515 2.231721 GGTCTCTCGTATAGGCCATTCC 59.768 54.545 5.01 0.00 38.67 3.01
2501 2516 2.231721 GGGTCTCTCGTATAGGCCATTC 59.768 54.545 5.01 0.00 40.71 2.67
2502 2517 2.158295 AGGGTCTCTCGTATAGGCCATT 60.158 50.000 5.01 0.00 40.71 3.16
2503 2518 1.429687 AGGGTCTCTCGTATAGGCCAT 59.570 52.381 5.01 0.00 40.71 4.40
2504 2519 0.851469 AGGGTCTCTCGTATAGGCCA 59.149 55.000 5.01 0.00 40.71 5.36
2505 2520 1.249407 CAGGGTCTCTCGTATAGGCC 58.751 60.000 0.00 0.00 38.05 5.19
2506 2521 1.984066 ACAGGGTCTCTCGTATAGGC 58.016 55.000 0.00 0.00 0.00 3.93
2507 2522 5.340439 AAAAACAGGGTCTCTCGTATAGG 57.660 43.478 0.00 0.00 0.00 2.57
2508 2523 8.767478 TTTTAAAAACAGGGTCTCTCGTATAG 57.233 34.615 0.00 0.00 0.00 1.31
2509 2524 7.332678 GCTTTTAAAAACAGGGTCTCTCGTATA 59.667 37.037 1.66 0.00 0.00 1.47
2510 2525 6.148976 GCTTTTAAAAACAGGGTCTCTCGTAT 59.851 38.462 1.66 0.00 0.00 3.06
2511 2526 5.467735 GCTTTTAAAAACAGGGTCTCTCGTA 59.532 40.000 1.66 0.00 0.00 3.43
2512 2527 4.275196 GCTTTTAAAAACAGGGTCTCTCGT 59.725 41.667 1.66 0.00 0.00 4.18
2513 2528 4.610680 CGCTTTTAAAAACAGGGTCTCTCG 60.611 45.833 1.66 0.00 0.00 4.04
2514 2529 4.275196 ACGCTTTTAAAAACAGGGTCTCTC 59.725 41.667 1.66 0.00 0.00 3.20
2515 2530 4.204799 ACGCTTTTAAAAACAGGGTCTCT 58.795 39.130 1.66 0.00 0.00 3.10
2516 2531 4.563337 ACGCTTTTAAAAACAGGGTCTC 57.437 40.909 1.66 0.00 0.00 3.36
2517 2532 6.644248 AATACGCTTTTAAAAACAGGGTCT 57.356 33.333 10.37 1.01 35.50 3.85
2518 2533 6.364165 GGAAATACGCTTTTAAAAACAGGGTC 59.636 38.462 10.37 0.79 35.50 4.46
2519 2534 6.041182 AGGAAATACGCTTTTAAAAACAGGGT 59.959 34.615 11.44 11.44 37.46 4.34
2520 2535 6.452242 AGGAAATACGCTTTTAAAAACAGGG 58.548 36.000 1.66 1.83 0.00 4.45
2521 2536 7.436970 ACAAGGAAATACGCTTTTAAAAACAGG 59.563 33.333 1.66 0.00 0.00 4.00
2522 2537 8.347729 ACAAGGAAATACGCTTTTAAAAACAG 57.652 30.769 1.66 0.00 0.00 3.16
2523 2538 9.235537 GTACAAGGAAATACGCTTTTAAAAACA 57.764 29.630 1.66 0.00 0.00 2.83
2524 2539 8.411928 CGTACAAGGAAATACGCTTTTAAAAAC 58.588 33.333 1.66 0.00 37.91 2.43
2525 2540 7.590689 CCGTACAAGGAAATACGCTTTTAAAAA 59.409 33.333 1.66 0.00 42.20 1.94
2526 2541 7.076983 CCGTACAAGGAAATACGCTTTTAAAA 58.923 34.615 0.00 0.00 42.20 1.52
2527 2542 6.348376 CCCGTACAAGGAAATACGCTTTTAAA 60.348 38.462 0.00 0.00 42.20 1.52
2528 2543 5.122082 CCCGTACAAGGAAATACGCTTTTAA 59.878 40.000 0.00 0.00 42.20 1.52
2529 2544 4.630940 CCCGTACAAGGAAATACGCTTTTA 59.369 41.667 0.00 0.00 42.20 1.52
2530 2545 3.437741 CCCGTACAAGGAAATACGCTTTT 59.562 43.478 0.00 0.00 42.20 2.27
2531 2546 3.004862 CCCGTACAAGGAAATACGCTTT 58.995 45.455 0.00 0.00 42.20 3.51
2532 2547 2.624636 CCCGTACAAGGAAATACGCTT 58.375 47.619 0.00 0.00 42.20 4.68
2533 2548 1.741394 GCCCGTACAAGGAAATACGCT 60.741 52.381 3.09 0.00 42.20 5.07
2534 2549 0.654160 GCCCGTACAAGGAAATACGC 59.346 55.000 3.09 0.00 42.20 4.42
2535 2550 2.012937 TGCCCGTACAAGGAAATACG 57.987 50.000 3.09 0.00 42.97 3.06
2536 2551 4.024302 GCTTATGCCCGTACAAGGAAATAC 60.024 45.833 3.09 0.00 0.00 1.89
2537 2552 4.131596 GCTTATGCCCGTACAAGGAAATA 58.868 43.478 3.09 0.00 0.00 1.40
2538 2553 2.949644 GCTTATGCCCGTACAAGGAAAT 59.050 45.455 3.09 0.00 0.00 2.17
2539 2554 2.290387 TGCTTATGCCCGTACAAGGAAA 60.290 45.455 3.09 0.00 38.71 3.13
2540 2555 1.279558 TGCTTATGCCCGTACAAGGAA 59.720 47.619 3.09 0.00 38.71 3.36
2541 2556 0.906066 TGCTTATGCCCGTACAAGGA 59.094 50.000 3.09 0.00 38.71 3.36
2542 2557 1.014352 GTGCTTATGCCCGTACAAGG 58.986 55.000 0.00 0.00 38.71 3.61
2543 2558 0.650512 CGTGCTTATGCCCGTACAAG 59.349 55.000 0.00 0.00 35.43 3.16
2544 2559 2.757212 CGTGCTTATGCCCGTACAA 58.243 52.632 0.00 0.00 35.43 2.41
2545 2560 4.506005 CGTGCTTATGCCCGTACA 57.494 55.556 0.00 0.00 35.43 2.90
2549 2564 1.992233 AATGCACGTGCTTATGCCCG 61.992 55.000 37.59 3.99 45.20 6.13
2550 2565 0.526096 CAATGCACGTGCTTATGCCC 60.526 55.000 37.59 10.23 42.66 5.36
2551 2566 0.171007 ACAATGCACGTGCTTATGCC 59.829 50.000 37.59 10.99 42.66 4.40
2552 2567 2.708514 CTACAATGCACGTGCTTATGC 58.291 47.619 37.59 14.25 42.66 3.14
2553 2568 2.708514 GCTACAATGCACGTGCTTATG 58.291 47.619 37.59 31.63 42.66 1.90
2554 2569 1.327460 CGCTACAATGCACGTGCTTAT 59.673 47.619 37.59 23.21 42.66 1.73
2555 2570 0.718904 CGCTACAATGCACGTGCTTA 59.281 50.000 37.59 21.95 42.66 3.09
2556 2571 0.948623 TCGCTACAATGCACGTGCTT 60.949 50.000 37.59 30.03 42.66 3.91
2557 2572 1.374125 TCGCTACAATGCACGTGCT 60.374 52.632 37.59 22.18 42.66 4.40
2558 2573 1.225745 GTCGCTACAATGCACGTGC 60.226 57.895 33.11 33.11 42.50 5.34
2559 2574 1.288419 TGGTCGCTACAATGCACGTG 61.288 55.000 12.28 12.28 0.00 4.49
2560 2575 1.005512 TGGTCGCTACAATGCACGT 60.006 52.632 0.00 0.00 0.00 4.49
2561 2576 0.735978 TCTGGTCGCTACAATGCACG 60.736 55.000 0.00 0.00 0.00 5.34
2562 2577 0.721718 GTCTGGTCGCTACAATGCAC 59.278 55.000 0.00 0.00 0.00 4.57
2563 2578 0.391130 GGTCTGGTCGCTACAATGCA 60.391 55.000 0.00 0.00 0.00 3.96
2564 2579 0.108138 AGGTCTGGTCGCTACAATGC 60.108 55.000 0.00 0.00 0.00 3.56
2565 2580 1.204704 TGAGGTCTGGTCGCTACAATG 59.795 52.381 0.00 0.00 0.00 2.82
2566 2581 1.557099 TGAGGTCTGGTCGCTACAAT 58.443 50.000 0.00 0.00 0.00 2.71
2800 2815 3.181489 GGTCGTGGTTCTATACTCAGTGG 60.181 52.174 0.00 0.00 0.00 4.00
2901 2918 5.804639 ACTCTCTATGTGTTACATTGCCAA 58.195 37.500 0.00 0.00 39.88 4.52
2947 2964 3.221771 TCCACCAGCCAAATATGCATAC 58.778 45.455 8.99 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.