Multiple sequence alignment - TraesCS6A01G269100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G269100 chr6A 100.000 3477 0 0 1 3477 495466604 495463128 0.000000e+00 6421.0
1 TraesCS6A01G269100 chr6B 92.139 1870 80 27 850 2693 532152309 532150481 0.000000e+00 2577.0
2 TraesCS6A01G269100 chr6B 80.588 510 76 11 2986 3475 532146807 532146301 4.240000e-99 372.0
3 TraesCS6A01G269100 chr6B 94.286 140 3 2 692 826 532152434 532152295 3.520000e-50 209.0
4 TraesCS6A01G269100 chr6B 98.095 105 2 0 2679 2783 532150129 532150025 2.130000e-42 183.0
5 TraesCS6A01G269100 chr6B 84.800 125 5 7 2804 2927 532149920 532149809 2.840000e-21 113.0
6 TraesCS6A01G269100 chr6B 93.506 77 4 1 614 690 532161490 532161415 2.840000e-21 113.0
7 TraesCS6A01G269100 chr6D 92.829 1799 73 23 850 2616 348028885 348030659 0.000000e+00 2556.0
8 TraesCS6A01G269100 chr6D 86.299 635 59 16 1 610 470264120 470263489 0.000000e+00 665.0
9 TraesCS6A01G269100 chr6D 93.151 219 11 3 611 825 348028680 348028898 5.600000e-83 318.0
10 TraesCS6A01G269100 chr6D 85.443 158 15 4 2795 2952 348030986 348031135 1.290000e-34 158.0
11 TraesCS6A01G269100 chr6D 93.548 62 4 0 2909 2970 348031136 348031197 3.700000e-15 93.5
12 TraesCS6A01G269100 chr4D 87.419 620 66 7 1 613 30283781 30284395 0.000000e+00 702.0
13 TraesCS6A01G269100 chr4D 85.828 628 59 18 1 608 461223517 461224134 1.050000e-179 640.0
14 TraesCS6A01G269100 chr4D 86.146 563 60 11 26 576 414601237 414601793 2.990000e-165 592.0
15 TraesCS6A01G269100 chr7D 86.234 632 60 16 1 612 117876448 117875824 0.000000e+00 660.0
16 TraesCS6A01G269100 chr7D 86.378 624 53 16 1 603 184985962 184986574 0.000000e+00 652.0
17 TraesCS6A01G269100 chr7D 76.655 287 34 22 349 610 45707395 45707673 1.010000e-25 128.0
18 TraesCS6A01G269100 chr5D 86.212 631 58 13 1 609 477033420 477032797 0.000000e+00 656.0
19 TraesCS6A01G269100 chr5D 85.625 640 66 15 1 620 445835832 445835199 0.000000e+00 649.0
20 TraesCS6A01G269100 chr5D 86.667 60 4 4 483 540 175771699 175771756 2.900000e-06 63.9
21 TraesCS6A01G269100 chr7A 85.827 635 66 13 1 614 369578151 369578782 0.000000e+00 652.0
22 TraesCS6A01G269100 chr2D 86.752 468 60 2 1817 2283 546872612 546873078 1.430000e-143 520.0
23 TraesCS6A01G269100 chr2D 85.897 468 64 2 1817 2283 546932424 546932890 6.700000e-137 497.0
24 TraesCS6A01G269100 chr2D 85.185 81 9 3 1442 1519 547250471 547250551 2.880000e-11 80.5
25 TraesCS6A01G269100 chr2B 86.207 464 62 2 1821 2283 653611144 653611606 5.180000e-138 501.0
26 TraesCS6A01G269100 chr2B 85.470 468 66 2 1817 2283 653619743 653620209 1.450000e-133 486.0
27 TraesCS6A01G269100 chr2B 75.974 308 50 16 2865 3170 13367686 13367401 1.680000e-28 137.0
28 TraesCS6A01G269100 chr2B 85.185 81 9 3 1442 1519 653746207 653746287 2.880000e-11 80.5
29 TraesCS6A01G269100 chr2A 85.897 468 64 2 1817 2283 689710089 689709623 6.700000e-137 497.0
30 TraesCS6A01G269100 chr2A 85.684 468 65 2 1817 2283 690410126 690410592 3.120000e-135 492.0
31 TraesCS6A01G269100 chr2A 85.621 459 64 2 1826 2283 689631028 689630571 6.750000e-132 481.0
32 TraesCS6A01G269100 chr2A 86.992 123 11 4 2861 2983 585829202 585829085 2.180000e-27 134.0
33 TraesCS6A01G269100 chr2A 85.185 81 9 3 1442 1519 690738390 690738470 2.880000e-11 80.5
34 TraesCS6A01G269100 chr1D 78.261 506 84 11 2984 3469 62705428 62704929 5.640000e-78 302.0
35 TraesCS6A01G269100 chr5B 85.185 135 16 2 2855 2989 31121651 31121781 6.050000e-28 135.0
36 TraesCS6A01G269100 chr5B 85.271 129 14 2 340 463 6208582 6208454 1.010000e-25 128.0
37 TraesCS6A01G269100 chr3B 77.483 151 30 3 468 616 795810760 795810612 1.720000e-13 87.9
38 TraesCS6A01G269100 chr3B 83.929 56 8 1 559 614 116683367 116683313 6.000000e-03 52.8
39 TraesCS6A01G269100 chr5A 77.206 136 27 4 483 615 9473352 9473486 3.720000e-10 76.8
40 TraesCS6A01G269100 chr5A 87.143 70 6 2 2862 2931 381758714 381758780 3.720000e-10 76.8
41 TraesCS6A01G269100 chr4B 81.707 82 11 4 1442 1519 548863633 548863552 8.060000e-07 65.8
42 TraesCS6A01G269100 chr7B 80.000 80 12 4 1444 1519 616911833 616911912 4.850000e-04 56.5
43 TraesCS6A01G269100 chr3A 100.000 29 0 0 586 614 143379182 143379154 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G269100 chr6A 495463128 495466604 3476 True 6421.000 6421 100.00000 1 3477 1 chr6A.!!$R1 3476
1 TraesCS6A01G269100 chr6B 532146301 532152434 6133 True 690.800 2577 89.98160 692 3475 5 chr6B.!!$R2 2783
2 TraesCS6A01G269100 chr6D 348028680 348031197 2517 False 781.375 2556 91.24275 611 2970 4 chr6D.!!$F1 2359
3 TraesCS6A01G269100 chr6D 470263489 470264120 631 True 665.000 665 86.29900 1 610 1 chr6D.!!$R1 609
4 TraesCS6A01G269100 chr4D 30283781 30284395 614 False 702.000 702 87.41900 1 613 1 chr4D.!!$F1 612
5 TraesCS6A01G269100 chr4D 461223517 461224134 617 False 640.000 640 85.82800 1 608 1 chr4D.!!$F3 607
6 TraesCS6A01G269100 chr4D 414601237 414601793 556 False 592.000 592 86.14600 26 576 1 chr4D.!!$F2 550
7 TraesCS6A01G269100 chr7D 117875824 117876448 624 True 660.000 660 86.23400 1 612 1 chr7D.!!$R1 611
8 TraesCS6A01G269100 chr7D 184985962 184986574 612 False 652.000 652 86.37800 1 603 1 chr7D.!!$F2 602
9 TraesCS6A01G269100 chr5D 477032797 477033420 623 True 656.000 656 86.21200 1 609 1 chr5D.!!$R2 608
10 TraesCS6A01G269100 chr5D 445835199 445835832 633 True 649.000 649 85.62500 1 620 1 chr5D.!!$R1 619
11 TraesCS6A01G269100 chr7A 369578151 369578782 631 False 652.000 652 85.82700 1 614 1 chr7A.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 861 0.038166 TTGACACCCAATCCTGCCTC 59.962 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2783 3301 0.319813 GTGCATGAACCAAACAGGGC 60.32 55.0 0.0 0.0 43.89 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.731728 GGGAGGCATGGGAGCACA 61.732 66.667 0.00 0.00 35.83 4.57
48 49 1.890979 GAGGCATGGGAGCACATCG 60.891 63.158 0.00 0.00 35.83 3.84
51 52 2.903855 CATGGGAGCACATCGGGC 60.904 66.667 0.00 0.00 0.00 6.13
55 56 4.451150 GGAGCACATCGGGCGACA 62.451 66.667 0.00 0.00 36.08 4.35
56 57 2.202932 GAGCACATCGGGCGACAT 60.203 61.111 0.00 0.00 36.08 3.06
116 119 6.122850 CATGAAGATGCCGTTGAAAATCTA 57.877 37.500 0.00 0.00 0.00 1.98
153 156 0.744057 TTCACATGATGATGCGGCGT 60.744 50.000 9.37 0.00 37.11 5.68
177 183 3.677424 CGACAATGAAGAGGAGGAGGAAC 60.677 52.174 0.00 0.00 0.00 3.62
241 253 1.093159 GAAGACGAGGACGAGGCTTA 58.907 55.000 0.00 0.00 42.66 3.09
245 257 3.285484 AGACGAGGACGAGGCTTAATTA 58.715 45.455 0.00 0.00 42.66 1.40
264 276 5.895636 ATTATTGATGTGCCTTTCGTTGA 57.104 34.783 0.00 0.00 0.00 3.18
271 283 2.884012 TGTGCCTTTCGTTGATGTGAAT 59.116 40.909 0.00 0.00 0.00 2.57
290 302 7.095910 TGTGAATTTTTGTGTCATGAACTTGT 58.904 30.769 0.00 0.00 0.00 3.16
309 321 7.315247 ACTTGTTTTGGATTTTAAACTTGGC 57.685 32.000 0.00 0.00 35.73 4.52
310 322 6.317642 ACTTGTTTTGGATTTTAAACTTGGCC 59.682 34.615 0.00 0.00 35.73 5.36
311 323 5.745227 TGTTTTGGATTTTAAACTTGGCCA 58.255 33.333 0.00 0.00 35.73 5.36
321 333 7.531857 TTTTAAACTTGGCCAGATGATGTTA 57.468 32.000 5.11 0.00 0.00 2.41
363 375 4.218200 TGTGGGCATGAACTTTTATGTCAG 59.782 41.667 0.00 0.00 30.72 3.51
386 401 5.521010 AGCATGAACTTGTTTGTGTGATTTG 59.479 36.000 0.00 0.00 0.00 2.32
401 417 6.071503 TGTGTGATTTGAATTATGCCATGTCA 60.072 34.615 0.00 0.00 0.00 3.58
551 594 1.291906 TGCCAAAGCAGACGATCGA 59.708 52.632 24.34 0.00 46.52 3.59
555 598 1.418373 CAAAGCAGACGATCGACACA 58.582 50.000 24.34 0.00 0.00 3.72
578 621 5.514914 CACTGCAAACTGATTTTTAACGTGT 59.485 36.000 0.00 0.00 0.00 4.49
580 623 5.641709 TGCAAACTGATTTTTAACGTGTCA 58.358 33.333 0.00 0.00 0.00 3.58
581 624 6.269315 TGCAAACTGATTTTTAACGTGTCAT 58.731 32.000 0.00 0.00 0.00 3.06
582 625 6.198029 TGCAAACTGATTTTTAACGTGTCATG 59.802 34.615 0.00 0.00 0.00 3.07
626 669 4.208746 TGCTCTAAAAACGAGGGGAAAAA 58.791 39.130 0.00 0.00 0.00 1.94
637 680 1.075536 AGGGGAAAAACAGTAGGCCAG 59.924 52.381 5.01 0.00 0.00 4.85
640 683 2.224793 GGGAAAAACAGTAGGCCAGTCT 60.225 50.000 5.01 0.00 0.00 3.24
651 695 3.418684 AGGCCAGTCTAATTTTCGTGT 57.581 42.857 5.01 0.00 0.00 4.49
686 730 8.504815 GTCCACTAAAACTAACAATCTTTCCTC 58.495 37.037 0.00 0.00 0.00 3.71
723 767 2.076863 ACACAAAGATTCTAGGCACGC 58.923 47.619 0.00 0.00 0.00 5.34
751 795 0.606673 GGCCAAGTTCAGAGTCCACC 60.607 60.000 0.00 0.00 0.00 4.61
813 859 1.337118 TTTTGACACCCAATCCTGCC 58.663 50.000 0.00 0.00 34.23 4.85
814 860 0.482446 TTTGACACCCAATCCTGCCT 59.518 50.000 0.00 0.00 34.23 4.75
815 861 0.038166 TTGACACCCAATCCTGCCTC 59.962 55.000 0.00 0.00 0.00 4.70
816 862 1.077429 GACACCCAATCCTGCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
817 863 1.542375 ACACCCAATCCTGCCTCCT 60.542 57.895 0.00 0.00 0.00 3.69
818 864 1.077212 CACCCAATCCTGCCTCCTG 60.077 63.158 0.00 0.00 0.00 3.86
819 865 1.229951 ACCCAATCCTGCCTCCTGA 60.230 57.895 0.00 0.00 0.00 3.86
820 866 0.846427 ACCCAATCCTGCCTCCTGAA 60.846 55.000 0.00 0.00 0.00 3.02
821 867 0.332632 CCCAATCCTGCCTCCTGAAA 59.667 55.000 0.00 0.00 0.00 2.69
822 868 1.272648 CCCAATCCTGCCTCCTGAAAA 60.273 52.381 0.00 0.00 0.00 2.29
823 869 2.097825 CCAATCCTGCCTCCTGAAAAG 58.902 52.381 0.00 0.00 0.00 2.27
824 870 1.475682 CAATCCTGCCTCCTGAAAAGC 59.524 52.381 0.00 0.00 0.00 3.51
825 871 0.998145 ATCCTGCCTCCTGAAAAGCT 59.002 50.000 0.00 0.00 0.00 3.74
826 872 0.773644 TCCTGCCTCCTGAAAAGCTT 59.226 50.000 0.00 0.00 0.00 3.74
827 873 1.145738 TCCTGCCTCCTGAAAAGCTTT 59.854 47.619 5.69 5.69 0.00 3.51
828 874 1.966354 CCTGCCTCCTGAAAAGCTTTT 59.034 47.619 24.08 24.08 0.00 2.27
829 875 2.366590 CCTGCCTCCTGAAAAGCTTTTT 59.633 45.455 24.58 9.47 0.00 1.94
872 918 1.662044 CTGAAAAGCTGGGGCACAC 59.338 57.895 0.00 0.00 41.70 3.82
899 945 1.134367 CTACAAATCTCACGGGCGAGA 59.866 52.381 4.25 4.25 45.80 4.04
942 992 1.806542 TCAATTGCGAGCTCCAGAAAC 59.193 47.619 8.47 0.00 0.00 2.78
966 1016 4.093952 CAAGCAGAGCCGCCGTTG 62.094 66.667 0.00 0.00 0.00 4.10
1155 1211 4.738198 TCATCTTCGGCGATGAGC 57.262 55.556 26.07 0.00 43.47 4.26
1430 1486 2.510238 CGCGAAGGAGGGCAAGAG 60.510 66.667 0.00 0.00 0.00 2.85
1431 1487 2.821810 GCGAAGGAGGGCAAGAGC 60.822 66.667 0.00 0.00 41.10 4.09
1527 1583 4.635765 TCTTGCTTCAGGGTAATGAAATCG 59.364 41.667 0.00 0.00 38.66 3.34
1628 1687 1.025812 GGACACGACCATCGATCTCT 58.974 55.000 5.04 0.00 43.74 3.10
1751 1810 4.557205 GGGTCAGATATATGTGTTCGTCC 58.443 47.826 9.50 6.17 0.00 4.79
1772 1846 2.048222 ACTGACATGACACGGCGG 60.048 61.111 13.24 2.35 0.00 6.13
1774 1848 3.589654 CTGACATGACACGGCGGGT 62.590 63.158 17.90 17.90 0.00 5.28
1788 1862 2.582978 GGGTCGACTTGGGCCTAC 59.417 66.667 16.46 0.00 0.00 3.18
1798 1872 2.666526 GGGCCTACGCTATGCAGC 60.667 66.667 0.84 0.00 44.90 5.25
2052 2126 1.078426 CAACGCCTACTTCCTGGGG 60.078 63.158 0.00 0.00 41.34 4.96
2304 2378 3.595691 GGTACGCTCATCTCCCATG 57.404 57.895 0.00 0.00 0.00 3.66
2308 2382 0.182061 ACGCTCATCTCCCATGCATT 59.818 50.000 0.00 0.00 0.00 3.56
2309 2383 1.417517 ACGCTCATCTCCCATGCATTA 59.582 47.619 0.00 0.00 0.00 1.90
2321 2395 2.146342 CATGCATTAGTCCCCGATGTC 58.854 52.381 0.00 0.00 0.00 3.06
2526 2608 2.033424 GCCCTTGTCAGTGAAGAACAAC 59.967 50.000 0.00 0.00 0.00 3.32
2528 2610 3.065371 CCCTTGTCAGTGAAGAACAACAC 59.935 47.826 0.00 0.00 37.30 3.32
2571 2670 5.582665 GGTAAGGTAGTGATGCTTGAGAAAG 59.417 44.000 0.00 0.00 0.00 2.62
2620 2771 6.947464 TCCAAGATTTCTCGAGGAACTATTT 58.053 36.000 8.71 0.00 41.55 1.40
2651 2802 0.951558 GATGAACGGTGGTGCACTTT 59.048 50.000 17.98 2.46 33.48 2.66
2739 3256 2.042686 AGTGCACTTTCAGTTGCAGA 57.957 45.000 15.25 0.00 34.61 4.26
2783 3301 8.750298 TCACTTGATCCTCTTTTACTAGTTAGG 58.250 37.037 0.00 1.29 0.00 2.69
2785 3303 6.481434 TGATCCTCTTTTACTAGTTAGGCC 57.519 41.667 0.00 0.00 0.00 5.19
2786 3304 5.365895 TGATCCTCTTTTACTAGTTAGGCCC 59.634 44.000 0.00 0.00 0.00 5.80
2787 3305 4.956582 TCCTCTTTTACTAGTTAGGCCCT 58.043 43.478 0.00 0.00 0.00 5.19
2788 3306 4.715297 TCCTCTTTTACTAGTTAGGCCCTG 59.285 45.833 0.00 0.00 0.00 4.45
2789 3307 4.470304 CCTCTTTTACTAGTTAGGCCCTGT 59.530 45.833 0.00 0.00 0.00 4.00
2790 3308 5.045797 CCTCTTTTACTAGTTAGGCCCTGTT 60.046 44.000 0.00 0.00 0.00 3.16
2793 3311 4.563140 TTACTAGTTAGGCCCTGTTTGG 57.437 45.455 0.00 0.00 0.00 3.28
2802 3415 0.319813 GCCCTGTTTGGTTCATGCAC 60.320 55.000 0.00 0.00 0.00 4.57
2848 3461 1.069703 CAGGACACACAGAATGCAACG 60.070 52.381 0.00 0.00 42.53 4.10
2850 3463 0.588252 GACACACAGAATGCAACGCT 59.412 50.000 0.00 0.00 42.53 5.07
2852 3465 1.002468 ACACACAGAATGCAACGCTTC 60.002 47.619 0.00 0.00 42.53 3.86
2853 3466 1.002576 CACACAGAATGCAACGCTTCA 60.003 47.619 0.00 0.00 42.53 3.02
2854 3467 1.881973 ACACAGAATGCAACGCTTCAT 59.118 42.857 0.00 0.00 42.53 2.57
2855 3468 2.294233 ACACAGAATGCAACGCTTCATT 59.706 40.909 0.00 0.00 42.53 2.57
2858 3471 3.254166 ACAGAATGCAACGCTTCATTTCT 59.746 39.130 0.00 0.00 42.53 2.52
2860 3473 4.322804 CAGAATGCAACGCTTCATTTCTTC 59.677 41.667 0.00 0.00 33.49 2.87
2867 3480 5.460091 GCAACGCTTCATTTCTTCTTCTTTT 59.540 36.000 0.00 0.00 0.00 2.27
2893 3506 0.393448 GAAGGATTACTCCCGGCCTC 59.607 60.000 0.00 0.00 43.21 4.70
2894 3507 0.031010 AAGGATTACTCCCGGCCTCT 60.031 55.000 0.00 0.00 43.21 3.69
2895 3508 0.760945 AGGATTACTCCCGGCCTCTG 60.761 60.000 0.00 0.00 43.21 3.35
2896 3509 1.069935 GATTACTCCCGGCCTCTGC 59.930 63.158 0.00 0.00 0.00 4.26
2897 3510 1.686325 GATTACTCCCGGCCTCTGCA 61.686 60.000 0.00 0.00 40.13 4.41
2898 3511 1.690219 ATTACTCCCGGCCTCTGCAG 61.690 60.000 7.63 7.63 40.13 4.41
2965 6493 7.116662 TCCAACAAATGTGTAGTACGATACAAC 59.883 37.037 9.43 0.52 37.41 3.32
2973 6501 7.025365 TGTGTAGTACGATACAACAACTCATC 58.975 38.462 3.13 0.00 37.41 2.92
3025 6581 8.366671 GTGCCTATACACCTATCTTTTGTTAG 57.633 38.462 0.00 0.00 34.35 2.34
3026 6582 8.202137 GTGCCTATACACCTATCTTTTGTTAGA 58.798 37.037 0.00 0.00 34.35 2.10
3027 6583 8.202137 TGCCTATACACCTATCTTTTGTTAGAC 58.798 37.037 0.00 0.00 0.00 2.59
3028 6584 7.656542 GCCTATACACCTATCTTTTGTTAGACC 59.343 40.741 0.00 0.00 0.00 3.85
3029 6585 7.866393 CCTATACACCTATCTTTTGTTAGACCG 59.134 40.741 0.00 0.00 0.00 4.79
3030 6586 5.479124 ACACCTATCTTTTGTTAGACCGT 57.521 39.130 0.00 0.00 0.00 4.83
3031 6587 5.861727 ACACCTATCTTTTGTTAGACCGTT 58.138 37.500 0.00 0.00 0.00 4.44
3032 6588 6.293698 ACACCTATCTTTTGTTAGACCGTTT 58.706 36.000 0.00 0.00 0.00 3.60
3033 6589 6.769341 ACACCTATCTTTTGTTAGACCGTTTT 59.231 34.615 0.00 0.00 0.00 2.43
3053 6610 7.182089 CGTTTTTCAAACCGGTTATAGGTATC 58.818 38.462 22.60 7.42 41.95 2.24
3054 6611 7.475015 GTTTTTCAAACCGGTTATAGGTATCC 58.525 38.462 22.60 0.42 41.95 2.59
3056 6613 3.321682 TCAAACCGGTTATAGGTATCCCG 59.678 47.826 22.60 0.00 41.95 5.14
3059 6616 2.242043 CCGGTTATAGGTATCCCGTGT 58.758 52.381 0.00 0.00 36.98 4.49
3068 6625 0.529378 GTATCCCGTGTGACCGTCTT 59.471 55.000 0.00 0.00 0.00 3.01
3073 6630 0.736325 CCGTGTGACCGTCTTCCATC 60.736 60.000 0.00 0.00 0.00 3.51
3074 6631 0.243907 CGTGTGACCGTCTTCCATCT 59.756 55.000 0.00 0.00 0.00 2.90
3081 6638 0.798776 CCGTCTTCCATCTGTTGCAC 59.201 55.000 0.00 0.00 0.00 4.57
3082 6639 1.511850 CGTCTTCCATCTGTTGCACA 58.488 50.000 0.00 0.00 0.00 4.57
3089 6646 4.019792 TCCATCTGTTGCACACATAAGT 57.980 40.909 0.00 0.00 33.76 2.24
3098 6655 5.065090 TGTTGCACACATAAGTCATATGCTC 59.935 40.000 0.00 0.00 44.46 4.26
3099 6656 4.768583 TGCACACATAAGTCATATGCTCA 58.231 39.130 0.00 0.00 44.46 4.26
3108 6665 3.484407 AGTCATATGCTCATTGGCTTCC 58.516 45.455 0.00 0.00 0.00 3.46
3113 6670 2.042831 GCTCATTGGCTTCCGCACT 61.043 57.895 0.00 0.00 38.10 4.40
3114 6671 1.798735 CTCATTGGCTTCCGCACTG 59.201 57.895 0.00 0.00 38.10 3.66
3115 6672 0.957395 CTCATTGGCTTCCGCACTGT 60.957 55.000 0.00 0.00 38.10 3.55
3124 6681 2.479837 CTTCCGCACTGTTGAGTAACA 58.520 47.619 0.00 0.00 44.17 2.41
3126 6683 3.120321 TCCGCACTGTTGAGTAACAAT 57.880 42.857 0.00 0.00 45.53 2.71
3129 6686 3.436704 CCGCACTGTTGAGTAACAATCAT 59.563 43.478 0.00 0.00 45.53 2.45
3134 6691 6.525355 CACTGTTGAGTAACAATCATGTACG 58.475 40.000 0.00 0.00 45.53 3.67
3139 6696 6.465439 TGAGTAACAATCATGTACGGATCT 57.535 37.500 0.00 0.00 39.40 2.75
3145 6702 5.601662 ACAATCATGTACGGATCTAACCAG 58.398 41.667 0.00 0.00 38.24 4.00
3150 6707 2.829720 TGTACGGATCTAACCAGTTGCT 59.170 45.455 0.00 0.00 0.00 3.91
3151 6708 2.674796 ACGGATCTAACCAGTTGCTC 57.325 50.000 0.00 0.00 0.00 4.26
3159 6716 6.407525 GGATCTAACCAGTTGCTCTGTAGATT 60.408 42.308 15.89 7.07 39.95 2.40
3162 6719 4.111375 ACCAGTTGCTCTGTAGATTACG 57.889 45.455 8.23 0.00 42.19 3.18
3229 6786 4.141287 CCGATAGTTTCATATGGCCCAAA 58.859 43.478 0.00 0.00 0.00 3.28
3243 6800 1.686355 CCCAAAGTAAGGCACACACA 58.314 50.000 0.00 0.00 0.00 3.72
3253 6810 2.818841 CACACACACCCCGACTCA 59.181 61.111 0.00 0.00 0.00 3.41
3260 6817 2.304761 ACACACCCCGACTCAAATATGT 59.695 45.455 0.00 0.00 0.00 2.29
3261 6818 2.677836 CACACCCCGACTCAAATATGTG 59.322 50.000 0.00 0.00 0.00 3.21
3263 6820 1.308998 CCCCGACTCAAATATGTGCC 58.691 55.000 0.00 0.00 0.00 5.01
3269 6826 3.302480 CGACTCAAATATGTGCCGCTAAC 60.302 47.826 0.00 0.00 0.00 2.34
3273 6830 5.878116 ACTCAAATATGTGCCGCTAACTTAA 59.122 36.000 0.00 0.00 0.00 1.85
3284 6841 3.633065 CCGCTAACTTAAGCTCTACCTCT 59.367 47.826 1.29 0.00 40.49 3.69
3289 6846 7.432838 CGCTAACTTAAGCTCTACCTCTTTTAG 59.567 40.741 1.29 0.17 40.49 1.85
3303 6860 4.021981 CCTCTTTTAGCCAAGTCCCAAAAG 60.022 45.833 0.00 0.00 37.48 2.27
3322 6879 6.884295 CCAAAAGGAGTGTTTATGGTATCAGA 59.116 38.462 0.00 0.00 0.00 3.27
3325 6882 6.179906 AGGAGTGTTTATGGTATCAGATGG 57.820 41.667 0.00 0.00 0.00 3.51
3329 6886 7.015292 GGAGTGTTTATGGTATCAGATGGACTA 59.985 40.741 0.00 0.00 0.00 2.59
3334 6891 5.871396 ATGGTATCAGATGGACTAACGTT 57.129 39.130 5.88 5.88 0.00 3.99
3370 6927 0.882927 GTGCGCCACAGTAGTTTGGA 60.883 55.000 4.18 0.00 34.46 3.53
3400 6975 5.673514 TGGATTGATTCATCTCGATCACAA 58.326 37.500 0.00 0.00 37.66 3.33
3401 6976 6.114767 TGGATTGATTCATCTCGATCACAAA 58.885 36.000 0.00 0.00 37.66 2.83
3404 6979 8.133627 GGATTGATTCATCTCGATCACAAAAAT 58.866 33.333 0.00 0.00 37.66 1.82
3407 6982 9.773328 TTGATTCATCTCGATCACAAAAATAAC 57.227 29.630 0.00 0.00 0.00 1.89
3438 7013 2.604969 TCCTCGCAATTACGTTTTGC 57.395 45.000 20.08 20.08 44.68 3.68
3456 7031 6.612306 GTTTTGCCAGGTTATCTTTAGTCAG 58.388 40.000 0.00 0.00 0.00 3.51
3459 7034 4.081087 TGCCAGGTTATCTTTAGTCAGGAC 60.081 45.833 0.00 0.00 0.00 3.85
3465 7040 6.272558 AGGTTATCTTTAGTCAGGACCACTTT 59.727 38.462 0.00 0.00 0.00 2.66
3466 7041 6.594547 GGTTATCTTTAGTCAGGACCACTTTC 59.405 42.308 0.00 0.00 0.00 2.62
3471 7046 6.325545 TCTTTAGTCAGGACCACTTTCTTGTA 59.674 38.462 0.00 0.00 0.00 2.41
3475 7050 4.879545 GTCAGGACCACTTTCTTGTAAACA 59.120 41.667 0.00 0.00 0.00 2.83
3476 7051 5.355910 GTCAGGACCACTTTCTTGTAAACAA 59.644 40.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.585990 CATTCCGCCATGTCGCCC 61.586 66.667 0.00 0.00 0.00 6.13
53 54 3.175133 GGAAGACATTCCGCCATGT 57.825 52.632 0.00 0.00 45.50 3.21
116 119 2.032681 GCTCGGAAGGTGTTGGCT 59.967 61.111 0.00 0.00 0.00 4.75
153 156 1.205655 CTCCTCCTCTTCATTGTCGCA 59.794 52.381 0.00 0.00 0.00 5.10
189 195 0.631753 TCCGACTCATCCTCCTCCTT 59.368 55.000 0.00 0.00 0.00 3.36
241 253 6.266168 TCAACGAAAGGCACATCAATAATT 57.734 33.333 0.00 0.00 0.00 1.40
245 257 3.507233 ACATCAACGAAAGGCACATCAAT 59.493 39.130 0.00 0.00 0.00 2.57
264 276 7.765360 ACAAGTTCATGACACAAAAATTCACAT 59.235 29.630 0.00 0.00 0.00 3.21
271 283 6.931281 TCCAAAACAAGTTCATGACACAAAAA 59.069 30.769 0.00 0.00 0.00 1.94
290 302 6.240549 TCTGGCCAAGTTTAAAATCCAAAA 57.759 33.333 7.01 0.00 0.00 2.44
309 321 3.758425 TCATGCCCATAACATCATCTGG 58.242 45.455 0.00 0.00 0.00 3.86
310 322 5.977489 ATTCATGCCCATAACATCATCTG 57.023 39.130 0.00 0.00 0.00 2.90
311 323 6.551975 TCAAATTCATGCCCATAACATCATCT 59.448 34.615 0.00 0.00 0.00 2.90
321 333 4.563993 CCACAAGTTCAAATTCATGCCCAT 60.564 41.667 0.00 0.00 0.00 4.00
363 375 5.519566 TCAAATCACACAAACAAGTTCATGC 59.480 36.000 0.00 0.00 0.00 4.06
386 401 7.830940 TCAAAACAATGACATGGCATAATTC 57.169 32.000 16.16 0.00 0.00 2.17
551 594 5.514914 CGTTAAAAATCAGTTTGCAGTGTGT 59.485 36.000 0.00 0.00 0.00 3.72
555 598 5.646606 ACACGTTAAAAATCAGTTTGCAGT 58.353 33.333 0.00 0.00 0.00 4.40
578 621 1.152984 CAGCCGCCCAATACCATGA 60.153 57.895 0.00 0.00 0.00 3.07
580 623 1.037030 CAACAGCCGCCCAATACCAT 61.037 55.000 0.00 0.00 0.00 3.55
581 624 1.677300 CAACAGCCGCCCAATACCA 60.677 57.895 0.00 0.00 0.00 3.25
582 625 2.414785 CCAACAGCCGCCCAATACC 61.415 63.158 0.00 0.00 0.00 2.73
626 669 4.020485 ACGAAAATTAGACTGGCCTACTGT 60.020 41.667 3.32 0.00 0.00 3.55
637 680 7.165318 GGACTTGTTTTGACACGAAAATTAGAC 59.835 37.037 0.00 0.00 0.00 2.59
640 683 6.748198 GTGGACTTGTTTTGACACGAAAATTA 59.252 34.615 0.00 0.00 0.00 1.40
651 695 8.338072 TGTTAGTTTTAGTGGACTTGTTTTGA 57.662 30.769 0.00 0.00 0.00 2.69
686 730 2.556189 TGTGTTCCCATTTCAACGGATG 59.444 45.455 0.00 0.00 0.00 3.51
751 795 1.153549 GTGGCTGCTAGGACTTCCG 60.154 63.158 0.00 0.00 42.08 4.30
829 875 3.641436 GGCTCCCCTCAAAGAAAGAAAAA 59.359 43.478 0.00 0.00 0.00 1.94
830 876 3.117131 AGGCTCCCCTCAAAGAAAGAAAA 60.117 43.478 0.00 0.00 36.46 2.29
831 877 2.447047 AGGCTCCCCTCAAAGAAAGAAA 59.553 45.455 0.00 0.00 36.46 2.52
832 878 2.065799 AGGCTCCCCTCAAAGAAAGAA 58.934 47.619 0.00 0.00 36.46 2.52
833 879 1.747444 AGGCTCCCCTCAAAGAAAGA 58.253 50.000 0.00 0.00 36.46 2.52
843 889 1.857638 GCTTTTCAGGAGGCTCCCCT 61.858 60.000 29.62 9.96 46.74 4.79
844 890 1.379176 GCTTTTCAGGAGGCTCCCC 60.379 63.158 29.62 7.08 37.19 4.81
845 891 0.679321 CAGCTTTTCAGGAGGCTCCC 60.679 60.000 29.62 12.56 37.19 4.30
846 892 0.679321 CCAGCTTTTCAGGAGGCTCC 60.679 60.000 26.42 26.42 36.58 4.70
847 893 0.679321 CCCAGCTTTTCAGGAGGCTC 60.679 60.000 5.78 5.78 32.30 4.70
848 894 1.381851 CCCAGCTTTTCAGGAGGCT 59.618 57.895 0.00 0.00 35.23 4.58
872 918 2.671396 CCGTGAGATTTGTAGTTTCGGG 59.329 50.000 0.00 0.00 33.20 5.14
914 960 1.926511 GCTCGCAATTGACTGGTGGG 61.927 60.000 10.34 0.00 0.00 4.61
942 992 2.031516 CGGCTCTGCTTGACTGGTG 61.032 63.158 0.00 0.00 0.00 4.17
984 1040 1.300465 CATGGCGCTACGAGCAGAT 60.300 57.895 7.64 0.00 42.58 2.90
1330 1386 2.280592 GTTGTCCTTGGACGCGGT 60.281 61.111 12.47 0.00 0.00 5.68
1527 1583 3.786635 ACGACAAGGAGAATATGCAGAC 58.213 45.455 0.00 0.00 0.00 3.51
1618 1677 1.137675 TGGTGCTTGGAGAGATCGATG 59.862 52.381 0.54 0.00 0.00 3.84
1628 1687 2.203480 GGGCTTGTGGTGCTTGGA 60.203 61.111 0.00 0.00 0.00 3.53
1729 1788 4.557205 GGACGAACACATATATCTGACCC 58.443 47.826 0.00 0.00 0.00 4.46
1751 1810 1.617755 GCCGTGTCATGTCAGTGTCG 61.618 60.000 0.00 0.00 0.00 4.35
1772 1846 2.183555 CGTAGGCCCAAGTCGACC 59.816 66.667 13.01 0.00 0.00 4.79
1774 1848 0.754217 ATAGCGTAGGCCCAAGTCGA 60.754 55.000 0.00 0.00 41.24 4.20
2052 2126 0.611714 ACTTGGGGGACACGATGTAC 59.388 55.000 0.00 0.00 0.00 2.90
2088 2162 1.458588 CTCCTCCTCCAGGTAGCCC 60.459 68.421 0.00 0.00 43.95 5.19
2268 2342 2.970324 GCGGCGAAGTGGTTGACA 60.970 61.111 12.98 0.00 0.00 3.58
2304 2378 1.603172 CGAGACATCGGGGACTAATGC 60.603 57.143 0.00 0.00 45.39 3.56
2321 2395 0.519519 AGCAGAGTTCAGACGTCGAG 59.480 55.000 10.46 7.33 0.00 4.04
2395 2470 1.684450 TGCATGCCCATCATCATTCAC 59.316 47.619 16.68 0.00 31.79 3.18
2526 2608 4.454847 ACCTATCCGACACATATACGAGTG 59.545 45.833 0.00 0.00 41.40 3.51
2528 2610 6.183360 CCTTACCTATCCGACACATATACGAG 60.183 46.154 0.00 0.00 0.00 4.18
2571 2670 2.862700 GTGACAAACGGCCGTTTTC 58.137 52.632 44.80 38.45 44.84 2.29
2592 2691 2.167281 TCCTCGAGAAATCTTGGAGCTG 59.833 50.000 15.71 0.00 0.00 4.24
2620 2771 1.202371 CCGTTCATCGCTAGCTAACCA 60.202 52.381 13.93 0.00 38.35 3.67
2651 2802 2.875296 AGCAACTTCCATTACAAGCCA 58.125 42.857 0.00 0.00 0.00 4.75
2739 3256 6.756074 TCAAGTGAAAATGCAAAATTTCGAGT 59.244 30.769 14.43 7.30 38.16 4.18
2783 3301 0.319813 GTGCATGAACCAAACAGGGC 60.320 55.000 0.00 0.00 43.89 5.19
2785 3303 2.427232 CTGTGCATGAACCAAACAGG 57.573 50.000 0.00 0.00 45.67 4.00
2786 3304 1.955778 TCCTGTGCATGAACCAAACAG 59.044 47.619 0.00 2.29 38.36 3.16
2787 3305 2.064434 TCCTGTGCATGAACCAAACA 57.936 45.000 0.00 0.00 0.00 2.83
2788 3306 2.622942 TCTTCCTGTGCATGAACCAAAC 59.377 45.455 0.00 0.00 0.00 2.93
2789 3307 2.942804 TCTTCCTGTGCATGAACCAAA 58.057 42.857 0.00 0.00 0.00 3.28
2790 3308 2.655090 TCTTCCTGTGCATGAACCAA 57.345 45.000 0.00 0.00 0.00 3.67
2793 3311 2.157738 AGCTTCTTCCTGTGCATGAAC 58.842 47.619 0.00 0.00 0.00 3.18
2802 3415 2.303022 TGGGTTCAGTAGCTTCTTCCTG 59.697 50.000 0.00 0.00 0.00 3.86
2867 3480 4.141779 GCCGGGAGTAATCCTTCTTTTCTA 60.142 45.833 9.45 0.00 0.00 2.10
2875 3488 0.031010 AGAGGCCGGGAGTAATCCTT 60.031 55.000 9.45 0.00 0.00 3.36
2893 3506 3.193614 ATCGCTTCGCTGCTGCAG 61.194 61.111 24.80 24.80 39.64 4.41
2894 3507 3.493440 CATCGCTTCGCTGCTGCA 61.493 61.111 16.29 0.88 39.64 4.41
2895 3508 4.883300 GCATCGCTTCGCTGCTGC 62.883 66.667 5.34 5.34 44.03 5.25
2896 3509 2.820619 ATGCATCGCTTCGCTGCTG 61.821 57.895 14.55 0.00 46.83 4.41
2897 3510 2.513204 ATGCATCGCTTCGCTGCT 60.513 55.556 14.55 0.45 46.83 4.24
2898 3511 2.352001 CATGCATCGCTTCGCTGC 60.352 61.111 0.00 7.92 46.88 5.25
2901 3514 2.100797 TTGCATGCATCGCTTCGC 59.899 55.556 23.37 9.44 0.00 4.70
2984 6512 7.567622 TGTATAGGCACCTAGTCCTAGATTTTT 59.432 37.037 2.35 0.00 38.26 1.94
3003 6559 7.866393 CGGTCTAACAAAAGATAGGTGTATAGG 59.134 40.741 0.00 0.00 0.00 2.57
3008 6564 5.479124 ACGGTCTAACAAAAGATAGGTGT 57.521 39.130 0.00 0.00 0.00 4.16
3017 6573 5.572126 CGGTTTGAAAAACGGTCTAACAAAA 59.428 36.000 5.32 0.00 44.85 2.44
3019 6575 4.660105 CGGTTTGAAAAACGGTCTAACAA 58.340 39.130 5.32 0.00 44.85 2.83
3029 6585 7.475015 GGATACCTATAACCGGTTTGAAAAAC 58.525 38.462 27.64 11.02 35.98 2.43
3030 6586 7.628769 GGATACCTATAACCGGTTTGAAAAA 57.371 36.000 27.64 6.39 35.98 1.94
3053 6610 2.048503 GGAAGACGGTCACACGGG 60.049 66.667 11.27 0.00 38.39 5.28
3054 6611 0.736325 GATGGAAGACGGTCACACGG 60.736 60.000 11.27 0.00 38.39 4.94
3056 6613 1.000955 ACAGATGGAAGACGGTCACAC 59.999 52.381 11.27 0.14 0.00 3.82
3059 6616 1.608025 GCAACAGATGGAAGACGGTCA 60.608 52.381 11.27 0.00 0.00 4.02
3074 6631 4.943093 AGCATATGACTTATGTGTGCAACA 59.057 37.500 6.97 0.00 40.75 3.33
3081 6638 5.472478 AGCCAATGAGCATATGACTTATGTG 59.528 40.000 6.97 6.89 39.99 3.21
3082 6639 5.628130 AGCCAATGAGCATATGACTTATGT 58.372 37.500 6.97 0.00 39.99 2.29
3089 6646 2.497138 CGGAAGCCAATGAGCATATGA 58.503 47.619 6.97 0.00 34.23 2.15
3108 6665 4.083855 ACATGATTGTTACTCAACAGTGCG 60.084 41.667 0.00 0.00 45.17 5.34
3113 6670 5.785243 TCCGTACATGATTGTTACTCAACA 58.215 37.500 0.00 0.00 42.93 3.33
3114 6671 6.757010 AGATCCGTACATGATTGTTACTCAAC 59.243 38.462 0.00 0.00 38.97 3.18
3115 6672 6.873997 AGATCCGTACATGATTGTTACTCAA 58.126 36.000 0.00 0.00 40.53 3.02
3124 6681 5.871396 ACTGGTTAGATCCGTACATGATT 57.129 39.130 0.00 0.00 0.00 2.57
3126 6683 4.679639 GCAACTGGTTAGATCCGTACATGA 60.680 45.833 0.00 0.00 0.00 3.07
3129 6686 2.829720 AGCAACTGGTTAGATCCGTACA 59.170 45.455 0.00 0.00 0.00 2.90
3145 6702 3.250744 TGCACGTAATCTACAGAGCAAC 58.749 45.455 0.00 0.00 31.05 4.17
3200 6757 7.990886 GGGCCATATGAAACTATCGGAATAATA 59.009 37.037 4.39 0.00 0.00 0.98
3201 6758 6.828785 GGGCCATATGAAACTATCGGAATAAT 59.171 38.462 4.39 0.00 0.00 1.28
3203 6760 5.249622 TGGGCCATATGAAACTATCGGAATA 59.750 40.000 0.00 0.00 0.00 1.75
3208 6765 4.821805 ACTTTGGGCCATATGAAACTATCG 59.178 41.667 7.26 0.00 0.00 2.92
3210 6767 6.777580 CCTTACTTTGGGCCATATGAAACTAT 59.222 38.462 7.26 0.00 0.00 2.12
3211 6768 6.126409 CCTTACTTTGGGCCATATGAAACTA 58.874 40.000 7.26 0.00 0.00 2.24
3216 6773 2.944129 GCCTTACTTTGGGCCATATGA 58.056 47.619 7.26 0.00 42.30 2.15
3224 6781 1.336755 GTGTGTGTGCCTTACTTTGGG 59.663 52.381 0.00 0.00 0.00 4.12
3229 6786 1.454539 GGGGTGTGTGTGCCTTACT 59.545 57.895 0.00 0.00 0.00 2.24
3242 6799 1.670811 GCACATATTTGAGTCGGGGTG 59.329 52.381 0.00 0.00 0.00 4.61
3243 6800 1.408266 GGCACATATTTGAGTCGGGGT 60.408 52.381 0.00 0.00 0.00 4.95
3253 6810 4.881850 AGCTTAAGTTAGCGGCACATATTT 59.118 37.500 1.45 0.00 45.82 1.40
3260 6817 2.159142 GGTAGAGCTTAAGTTAGCGGCA 60.159 50.000 1.45 0.00 45.82 5.69
3261 6818 2.101082 AGGTAGAGCTTAAGTTAGCGGC 59.899 50.000 4.02 0.00 45.82 6.53
3263 6820 4.904253 AGAGGTAGAGCTTAAGTTAGCG 57.096 45.455 4.02 0.00 45.82 4.26
3269 6826 5.978814 TGGCTAAAAGAGGTAGAGCTTAAG 58.021 41.667 0.00 0.00 33.57 1.85
3273 6830 3.841255 ACTTGGCTAAAAGAGGTAGAGCT 59.159 43.478 0.00 0.00 33.57 4.09
3284 6841 3.895041 CTCCTTTTGGGACTTGGCTAAAA 59.105 43.478 0.00 0.00 39.58 1.52
3289 6846 0.961753 CACTCCTTTTGGGACTTGGC 59.038 55.000 0.00 0.00 39.58 4.52
3303 6860 5.992217 GTCCATCTGATACCATAAACACTCC 59.008 44.000 0.00 0.00 0.00 3.85
3322 6879 4.328536 TGTGGCATTTAACGTTAGTCCAT 58.671 39.130 17.01 5.02 0.00 3.41
3325 6882 4.095610 GCATGTGGCATTTAACGTTAGTC 58.904 43.478 8.23 0.00 43.97 2.59
3354 6911 2.032030 CACTTTCCAAACTACTGTGGCG 60.032 50.000 0.00 0.00 34.68 5.69
3360 6917 6.126409 TCAATCCAACACTTTCCAAACTACT 58.874 36.000 0.00 0.00 0.00 2.57
3365 6922 6.477053 TGAATCAATCCAACACTTTCCAAA 57.523 33.333 0.00 0.00 0.00 3.28
3370 6927 5.939883 TCGAGATGAATCAATCCAACACTTT 59.060 36.000 0.00 0.00 0.00 2.66
3400 6975 9.337396 TGCGAGGATAGTAAATGATGTTATTTT 57.663 29.630 0.00 0.00 32.79 1.82
3401 6976 8.902540 TGCGAGGATAGTAAATGATGTTATTT 57.097 30.769 0.00 0.00 34.78 1.40
3404 6979 8.902540 AATTGCGAGGATAGTAAATGATGTTA 57.097 30.769 0.00 0.00 0.00 2.41
3407 6982 7.116376 ACGTAATTGCGAGGATAGTAAATGATG 59.884 37.037 22.96 0.00 35.59 3.07
3438 7013 4.469945 TGGTCCTGACTAAAGATAACCTGG 59.530 45.833 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.