Multiple sequence alignment - TraesCS6A01G268900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G268900 chr6A 100.000 4257 0 0 1 4257 495449749 495454005 0.000000e+00 7862.0
1 TraesCS6A01G268900 chr6A 88.816 152 6 2 2101 2249 495451701 495451844 4.370000e-40 176.0
2 TraesCS6A01G268900 chr6A 88.816 152 6 2 1953 2096 495451849 495451997 4.370000e-40 176.0
3 TraesCS6A01G268900 chr6A 94.595 37 2 0 2060 2096 260118955 260118991 1.650000e-04 58.4
4 TraesCS6A01G268900 chr6D 91.071 2027 117 40 98 2096 348086488 348084498 0.000000e+00 2682.0
5 TraesCS6A01G268900 chr6D 93.564 1274 42 17 2107 3372 348084631 348083390 0.000000e+00 1862.0
6 TraesCS6A01G268900 chr6D 74.123 827 149 45 1061 1862 43070584 43069798 9.010000e-72 281.0
7 TraesCS6A01G268900 chr6D 78.924 446 33 25 3797 4204 348082681 348082259 3.290000e-61 246.0
8 TraesCS6A01G268900 chr6D 97.500 80 1 1 3371 3450 348083309 348083231 7.420000e-28 135.0
9 TraesCS6A01G268900 chr6D 100.000 37 0 0 1 37 348086722 348086686 7.640000e-08 69.4
10 TraesCS6A01G268900 chr6D 94.595 37 2 0 2060 2096 168248866 168248830 1.650000e-04 58.4
11 TraesCS6A01G268900 chr6D 100.000 28 0 0 3648 3675 348082873 348082846 8.000000e-03 52.8
12 TraesCS6A01G268900 chr6B 91.284 1503 80 30 678 2144 532043423 532044910 0.000000e+00 2002.0
13 TraesCS6A01G268900 chr6B 95.041 968 27 14 2409 3372 532044892 532045842 0.000000e+00 1502.0
14 TraesCS6A01G268900 chr6B 82.319 526 86 6 2504 3026 103663977 103664498 2.330000e-122 449.0
15 TraesCS6A01G268900 chr6B 88.591 298 23 7 225 515 531739188 531739481 6.770000e-93 351.0
16 TraesCS6A01G268900 chr6B 82.366 448 36 25 3799 4229 532046483 532046904 2.440000e-92 350.0
17 TraesCS6A01G268900 chr6B 92.157 153 11 1 1908 2060 532044740 532044891 9.270000e-52 215.0
18 TraesCS6A01G268900 chr6B 83.251 203 28 2 1252 1454 103663651 103663847 9.400000e-42 182.0
19 TraesCS6A01G268900 chr6B 79.752 242 19 14 1987 2213 532044665 532044891 9.540000e-32 148.0
20 TraesCS6A01G268900 chr6B 88.073 109 4 2 2105 2213 532044713 532044812 2.080000e-23 121.0
21 TraesCS6A01G268900 chr6B 92.683 82 6 0 1912 1993 532044823 532044904 7.480000e-23 119.0
22 TraesCS6A01G268900 chr6B 85.321 109 7 5 3371 3479 532045923 532046022 2.090000e-18 104.0
23 TraesCS6A01G268900 chr6B 91.304 69 4 1 512 578 531739561 531739629 4.530000e-15 93.5
24 TraesCS6A01G268900 chr5B 91.580 962 67 9 2409 3363 458387023 458387977 0.000000e+00 1315.0
25 TraesCS6A01G268900 chr5B 86.622 1054 82 35 955 1993 458386026 458387035 0.000000e+00 1110.0
26 TraesCS6A01G268900 chr5D 90.674 965 70 14 2409 3363 381980158 381981112 0.000000e+00 1266.0
27 TraesCS6A01G268900 chr5D 86.567 1005 78 27 994 1993 381979218 381980170 0.000000e+00 1055.0
28 TraesCS6A01G268900 chr5A 90.580 966 73 11 2409 3363 482316608 482317566 0.000000e+00 1264.0
29 TraesCS6A01G268900 chr5A 85.209 1102 85 36 920 1993 482315569 482316620 0.000000e+00 1061.0
30 TraesCS6A01G268900 chr2D 81.725 777 113 21 2421 3176 548081418 548080650 4.680000e-174 621.0
31 TraesCS6A01G268900 chr2D 98.195 277 4 1 1255 1530 68467435 68467159 2.300000e-132 483.0
32 TraesCS6A01G268900 chr2D 75.366 889 150 50 1061 1913 548082354 548081499 8.700000e-97 364.0
33 TraesCS6A01G268900 chr2D 94.660 206 8 2 2213 2417 635585227 635585430 2.470000e-82 316.0
34 TraesCS6A01G268900 chr2D 100.000 75 0 0 1634 1708 68467161 68467087 5.740000e-29 139.0
35 TraesCS6A01G268900 chr2A 81.510 768 123 15 2421 3176 690928936 690929696 7.820000e-172 614.0
36 TraesCS6A01G268900 chr2A 77.974 681 116 25 1251 1913 690928188 690928852 3.080000e-106 396.0
37 TraesCS6A01G268900 chr2B 81.477 772 117 21 2421 3176 655010963 655010202 1.010000e-170 610.0
38 TraesCS6A01G268900 chr2B 77.713 682 118 27 1251 1913 655011712 655011046 1.860000e-103 387.0
39 TraesCS6A01G268900 chr2B 98.361 61 1 0 1257 1317 588049305 588049365 1.620000e-19 108.0
40 TraesCS6A01G268900 chrUn 94.660 206 8 2 2213 2417 403667973 403668176 2.470000e-82 316.0
41 TraesCS6A01G268900 chrUn 94.175 206 9 2 2213 2417 93412305 93412508 1.150000e-80 311.0
42 TraesCS6A01G268900 chrUn 94.175 206 9 2 2213 2417 93414673 93414876 1.150000e-80 311.0
43 TraesCS6A01G268900 chrUn 94.595 37 2 0 2060 2096 93412305 93412341 1.650000e-04 58.4
44 TraesCS6A01G268900 chrUn 94.595 37 2 0 2060 2096 93414673 93414709 1.650000e-04 58.4
45 TraesCS6A01G268900 chrUn 94.595 37 2 0 2060 2096 403667973 403668009 1.650000e-04 58.4
46 TraesCS6A01G268900 chr3D 94.660 206 8 2 2213 2417 24170680 24170477 2.470000e-82 316.0
47 TraesCS6A01G268900 chr3D 94.175 206 9 2 2213 2417 24169139 24168936 1.150000e-80 311.0
48 TraesCS6A01G268900 chr1D 94.660 206 7 3 2213 2417 254523396 254523194 2.470000e-82 316.0
49 TraesCS6A01G268900 chr1D 94.595 37 2 0 2060 2096 254523396 254523360 1.650000e-04 58.4
50 TraesCS6A01G268900 chr1A 94.660 206 8 2 2213 2417 584780771 584780568 2.470000e-82 316.0
51 TraesCS6A01G268900 chr1A 94.595 37 2 0 2060 2096 584780771 584780735 1.650000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G268900 chr6A 495449749 495454005 4256 False 2738.000 7862 92.544000 1 4257 3 chr6A.!!$F2 4256
1 TraesCS6A01G268900 chr6D 348082259 348086722 4463 True 841.200 2682 93.509833 1 4204 6 chr6D.!!$R3 4203
2 TraesCS6A01G268900 chr6D 43069798 43070584 786 True 281.000 281 74.123000 1061 1862 1 chr6D.!!$R1 801
3 TraesCS6A01G268900 chr6B 532043423 532046904 3481 False 570.125 2002 88.334625 678 4229 8 chr6B.!!$F3 3551
4 TraesCS6A01G268900 chr6B 103663651 103664498 847 False 315.500 449 82.785000 1252 3026 2 chr6B.!!$F1 1774
5 TraesCS6A01G268900 chr5B 458386026 458387977 1951 False 1212.500 1315 89.101000 955 3363 2 chr5B.!!$F1 2408
6 TraesCS6A01G268900 chr5D 381979218 381981112 1894 False 1160.500 1266 88.620500 994 3363 2 chr5D.!!$F1 2369
7 TraesCS6A01G268900 chr5A 482315569 482317566 1997 False 1162.500 1264 87.894500 920 3363 2 chr5A.!!$F1 2443
8 TraesCS6A01G268900 chr2D 548080650 548082354 1704 True 492.500 621 78.545500 1061 3176 2 chr2D.!!$R2 2115
9 TraesCS6A01G268900 chr2A 690928188 690929696 1508 False 505.000 614 79.742000 1251 3176 2 chr2A.!!$F1 1925
10 TraesCS6A01G268900 chr2B 655010202 655011712 1510 True 498.500 610 79.595000 1251 3176 2 chr2B.!!$R1 1925
11 TraesCS6A01G268900 chr3D 24168936 24170680 1744 True 313.500 316 94.417500 2213 2417 2 chr3D.!!$R1 204

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 653 0.038251 TGATTCGCAAGCAGAGACGT 60.038 50.0 0.00 0.0 37.18 4.34 F
1728 1987 0.030638 GCAACGTGTTGTCCATTGCT 59.969 50.0 13.73 0.0 41.88 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2376 0.029035 CTGATCAAGCGCATTCAGGC 59.971 55.0 11.47 0.0 33.54 4.85 R
3684 5178 0.035458 GGTGGACTTCTGTCACCCTG 59.965 60.0 0.00 0.0 44.61 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.736325 GGGACATGTCACCGAGTTCG 60.736 60.000 26.47 0.00 39.44 3.95
71 204 3.845625 CACCTTTTTCGGTGCTCAC 57.154 52.632 0.00 0.00 46.98 3.51
72 205 1.308998 CACCTTTTTCGGTGCTCACT 58.691 50.000 0.00 0.00 46.98 3.41
73 206 1.676006 CACCTTTTTCGGTGCTCACTT 59.324 47.619 0.00 0.00 46.98 3.16
74 207 1.947456 ACCTTTTTCGGTGCTCACTTC 59.053 47.619 0.00 0.00 35.52 3.01
75 208 2.222027 CCTTTTTCGGTGCTCACTTCT 58.778 47.619 0.00 0.00 0.00 2.85
76 209 3.181458 ACCTTTTTCGGTGCTCACTTCTA 60.181 43.478 0.00 0.00 35.52 2.10
77 210 3.813166 CCTTTTTCGGTGCTCACTTCTAA 59.187 43.478 0.00 0.00 0.00 2.10
78 211 4.455877 CCTTTTTCGGTGCTCACTTCTAAT 59.544 41.667 0.00 0.00 0.00 1.73
79 212 5.390991 CCTTTTTCGGTGCTCACTTCTAATC 60.391 44.000 0.00 0.00 0.00 1.75
84 217 3.862267 CGGTGCTCACTTCTAATCTTCTG 59.138 47.826 0.00 0.00 0.00 3.02
115 277 0.673437 CAACACCGGAATGCCAACTT 59.327 50.000 9.46 0.00 0.00 2.66
118 280 2.802719 ACACCGGAATGCCAACTTAAT 58.197 42.857 9.46 0.00 0.00 1.40
120 282 3.945285 ACACCGGAATGCCAACTTAATAG 59.055 43.478 9.46 0.00 0.00 1.73
123 285 5.124776 CACCGGAATGCCAACTTAATAGAAA 59.875 40.000 9.46 0.00 0.00 2.52
163 325 1.074084 TCGTTAAGGGACCATGGCAAA 59.926 47.619 13.04 0.00 0.00 3.68
166 328 0.679640 TAAGGGACCATGGCAAAGCG 60.680 55.000 13.04 0.00 0.00 4.68
170 332 1.523154 GGACCATGGCAAAGCGAACA 61.523 55.000 13.04 0.00 0.00 3.18
176 338 2.879002 TGGCAAAGCGAACATTTTCA 57.121 40.000 0.00 0.00 0.00 2.69
179 341 3.243670 TGGCAAAGCGAACATTTTCATGA 60.244 39.130 0.00 0.00 34.11 3.07
184 346 6.089283 GCAAAGCGAACATTTTCATGACAATA 59.911 34.615 6.77 0.00 34.11 1.90
192 354 9.236691 GAACATTTTCATGACAATATATGCGTT 57.763 29.630 6.77 6.19 34.11 4.84
202 364 5.865085 ACAATATATGCGTTGGGAGTATGT 58.135 37.500 0.00 0.00 0.00 2.29
217 379 5.415701 GGGAGTATGTCAATTTCTTCAAGCA 59.584 40.000 0.00 0.00 0.00 3.91
219 381 7.370383 GGAGTATGTCAATTTCTTCAAGCAAA 58.630 34.615 0.00 0.00 0.00 3.68
220 382 7.327032 GGAGTATGTCAATTTCTTCAAGCAAAC 59.673 37.037 0.00 0.00 0.00 2.93
221 383 6.857964 AGTATGTCAATTTCTTCAAGCAAACG 59.142 34.615 0.00 0.00 0.00 3.60
222 384 4.992688 TGTCAATTTCTTCAAGCAAACGT 58.007 34.783 0.00 0.00 0.00 3.99
223 385 4.797868 TGTCAATTTCTTCAAGCAAACGTG 59.202 37.500 0.00 0.00 0.00 4.49
224 386 4.207019 GTCAATTTCTTCAAGCAAACGTGG 59.793 41.667 0.00 0.00 0.00 4.94
225 387 2.202295 TTTCTTCAAGCAAACGTGGC 57.798 45.000 4.40 4.40 0.00 5.01
231 393 2.200067 TCAAGCAAACGTGGCAATTTG 58.800 42.857 17.07 17.07 38.57 2.32
279 443 4.733523 GCCGTGTGTTCTTGAGAAATTGTT 60.734 41.667 0.00 0.00 35.58 2.83
298 462 6.767524 TTGTTATGTGTGTTTGAAGAACCT 57.232 33.333 0.00 0.00 0.00 3.50
330 494 0.733566 CGTTCGCAAATGCCATGCTT 60.734 50.000 0.00 0.00 41.64 3.91
331 495 0.717224 GTTCGCAAATGCCATGCTTG 59.283 50.000 0.00 0.00 41.64 4.01
423 596 0.167908 TGGATGAACATTCGCAACGC 59.832 50.000 0.00 0.00 0.00 4.84
438 611 2.732366 CAACGCGTGCTCAGAGTATAT 58.268 47.619 14.98 0.00 0.00 0.86
439 612 3.885358 CAACGCGTGCTCAGAGTATATA 58.115 45.455 14.98 0.00 0.00 0.86
443 616 4.036498 ACGCGTGCTCAGAGTATATAAACT 59.964 41.667 12.93 0.00 0.00 2.66
449 622 9.731819 CGTGCTCAGAGTATATAAACTTTCTTA 57.268 33.333 0.00 0.00 0.00 2.10
480 653 0.038251 TGATTCGCAAGCAGAGACGT 60.038 50.000 0.00 0.00 37.18 4.34
482 655 1.073216 ATTCGCAAGCAGAGACGTCG 61.073 55.000 10.46 0.00 37.18 5.12
483 656 2.402282 TTCGCAAGCAGAGACGTCGT 62.402 55.000 10.46 0.00 37.18 4.34
494 667 1.138247 GACGTCGTGGCGGAATACT 59.862 57.895 0.63 0.00 35.98 2.12
501 674 1.648504 GTGGCGGAATACTGTGGTAC 58.351 55.000 0.00 0.00 0.00 3.34
505 678 3.275999 GGCGGAATACTGTGGTACATTT 58.724 45.455 0.00 0.00 44.52 2.32
507 680 5.061179 GGCGGAATACTGTGGTACATTTAT 58.939 41.667 0.00 0.00 44.52 1.40
534 707 4.092116 ACCAGATTAGCCTAGCCATTTC 57.908 45.455 0.00 0.00 0.00 2.17
605 778 5.998553 GGAACCTTGACTGCTAAGTTTTAC 58.001 41.667 0.00 0.00 36.52 2.01
606 779 5.529800 GGAACCTTGACTGCTAAGTTTTACA 59.470 40.000 0.00 0.00 36.52 2.41
608 781 6.803154 ACCTTGACTGCTAAGTTTTACATC 57.197 37.500 0.00 0.00 36.52 3.06
609 782 6.296026 ACCTTGACTGCTAAGTTTTACATCA 58.704 36.000 0.00 0.00 36.52 3.07
610 783 6.428159 ACCTTGACTGCTAAGTTTTACATCAG 59.572 38.462 0.00 0.00 36.52 2.90
611 784 5.862924 TGACTGCTAAGTTTTACATCAGC 57.137 39.130 0.00 0.00 36.52 4.26
612 785 5.551233 TGACTGCTAAGTTTTACATCAGCT 58.449 37.500 0.00 0.00 36.52 4.24
613 786 6.697395 TGACTGCTAAGTTTTACATCAGCTA 58.303 36.000 0.00 0.00 36.52 3.32
614 787 7.331026 TGACTGCTAAGTTTTACATCAGCTAT 58.669 34.615 0.00 0.00 36.52 2.97
615 788 7.492669 TGACTGCTAAGTTTTACATCAGCTATC 59.507 37.037 0.00 0.00 36.52 2.08
616 789 6.763610 ACTGCTAAGTTTTACATCAGCTATCC 59.236 38.462 0.00 0.00 30.14 2.59
635 808 9.426534 AGCTATCCTTTTTAGAAAGCCATAAAT 57.573 29.630 0.18 0.00 40.75 1.40
649 822 5.029474 AGCCATAAATTTTTAGCCCCTCAA 58.971 37.500 0.00 0.00 0.00 3.02
721 894 0.106116 AACCCTAAAACCGTGGGCAA 60.106 50.000 0.00 0.00 44.56 4.52
739 912 3.003480 GCAACAACGGCTCTAATCTCTT 58.997 45.455 0.00 0.00 0.00 2.85
740 913 3.062774 GCAACAACGGCTCTAATCTCTTC 59.937 47.826 0.00 0.00 0.00 2.87
748 921 2.691011 GCTCTAATCTCTTCTCCGTGGT 59.309 50.000 0.00 0.00 0.00 4.16
800 973 1.202371 TCCCTACAAATACAGCTCGCG 60.202 52.381 0.00 0.00 0.00 5.87
848 1021 1.168714 GAGCAATCCGTGGCTTTCTT 58.831 50.000 0.00 0.00 41.22 2.52
852 1025 2.704572 CAATCCGTGGCTTTCTTCTCT 58.295 47.619 0.00 0.00 0.00 3.10
914 1093 1.202222 CCCGATCTGTTGATTGCTTGC 60.202 52.381 0.00 0.00 33.69 4.01
951 1130 2.735134 GTTGATCCGCGTTTACTTCTGT 59.265 45.455 4.92 0.00 0.00 3.41
952 1131 2.333926 TGATCCGCGTTTACTTCTGTG 58.666 47.619 4.92 0.00 0.00 3.66
953 1132 2.029739 TGATCCGCGTTTACTTCTGTGA 60.030 45.455 4.92 0.00 0.00 3.58
955 1134 3.034721 TCCGCGTTTACTTCTGTGATT 57.965 42.857 4.92 0.00 0.00 2.57
957 1136 3.430895 TCCGCGTTTACTTCTGTGATTTC 59.569 43.478 4.92 0.00 0.00 2.17
958 1137 3.432252 CCGCGTTTACTTCTGTGATTTCT 59.568 43.478 4.92 0.00 0.00 2.52
1158 1366 1.414897 CGTAAGTCGTTTGCTCCGC 59.585 57.895 0.00 0.00 34.52 5.54
1564 1790 2.029244 CGCTTGTGGTTCTACTAATGCG 59.971 50.000 0.00 0.00 0.00 4.73
1613 1855 1.771854 TGGTGGTGGTTACTGATGTGT 59.228 47.619 0.00 0.00 0.00 3.72
1615 1857 2.224426 GGTGGTGGTTACTGATGTGTGA 60.224 50.000 0.00 0.00 0.00 3.58
1617 1859 3.436704 GTGGTGGTTACTGATGTGTGATG 59.563 47.826 0.00 0.00 0.00 3.07
1619 1861 3.684788 GGTGGTTACTGATGTGTGATGTC 59.315 47.826 0.00 0.00 0.00 3.06
1728 1987 0.030638 GCAACGTGTTGTCCATTGCT 59.969 50.000 13.73 0.00 41.88 3.91
1770 2029 1.522092 GGACGCATCCAGTGGATCA 59.478 57.895 22.36 0.00 45.47 2.92
1926 2196 3.129813 TGGTTAGTATACACTGTCCAGCG 59.870 47.826 5.50 0.00 35.44 5.18
1948 2218 7.750458 CAGCGTCAGAAAATGTTATTTATGTGT 59.250 33.333 0.00 0.00 34.13 3.72
1955 2225 9.405587 AGAAAATGTTATTTATGTGTCCAAACG 57.594 29.630 0.00 0.00 0.00 3.60
1965 2235 1.601903 GTGTCCAAACGTGCTTGATCA 59.398 47.619 1.50 0.00 0.00 2.92
1966 2236 1.872952 TGTCCAAACGTGCTTGATCAG 59.127 47.619 1.50 0.00 0.00 2.90
1967 2237 2.143122 GTCCAAACGTGCTTGATCAGA 58.857 47.619 1.50 0.00 0.00 3.27
2008 2357 4.817318 TTGTATACACTGTCCAGCATCA 57.183 40.909 4.68 0.00 0.00 3.07
2009 2358 4.817318 TGTATACACTGTCCAGCATCAA 57.183 40.909 0.08 0.00 0.00 2.57
2010 2359 5.159273 TGTATACACTGTCCAGCATCAAA 57.841 39.130 0.08 0.00 0.00 2.69
2011 2360 5.555966 TGTATACACTGTCCAGCATCAAAA 58.444 37.500 0.08 0.00 0.00 2.44
2012 2361 6.000840 TGTATACACTGTCCAGCATCAAAAA 58.999 36.000 0.08 0.00 0.00 1.94
2036 2385 7.775397 AAATGTTATTTATGTGCCTGAATGC 57.225 32.000 0.00 0.00 0.00 3.56
2037 2386 4.919206 TGTTATTTATGTGCCTGAATGCG 58.081 39.130 0.00 0.00 0.00 4.73
2038 2387 2.497107 ATTTATGTGCCTGAATGCGC 57.503 45.000 0.00 0.00 42.05 6.09
2039 2388 1.462616 TTTATGTGCCTGAATGCGCT 58.537 45.000 9.73 0.00 42.20 5.92
2040 2389 1.462616 TTATGTGCCTGAATGCGCTT 58.537 45.000 9.73 0.00 42.20 4.68
2041 2390 0.734309 TATGTGCCTGAATGCGCTTG 59.266 50.000 9.73 0.00 42.20 4.01
2042 2391 0.961857 ATGTGCCTGAATGCGCTTGA 60.962 50.000 9.73 0.00 42.20 3.02
2043 2392 0.961857 TGTGCCTGAATGCGCTTGAT 60.962 50.000 9.73 0.00 42.20 2.57
2044 2393 0.248377 GTGCCTGAATGCGCTTGATC 60.248 55.000 9.73 1.98 38.69 2.92
2045 2394 0.677414 TGCCTGAATGCGCTTGATCA 60.677 50.000 9.73 6.88 0.00 2.92
2046 2395 0.029035 GCCTGAATGCGCTTGATCAG 59.971 55.000 9.73 15.80 39.16 2.90
2047 2396 1.660167 CCTGAATGCGCTTGATCAGA 58.340 50.000 23.93 0.00 41.38 3.27
2048 2397 2.219458 CCTGAATGCGCTTGATCAGAT 58.781 47.619 23.93 1.04 41.38 2.90
2049 2398 2.031944 CCTGAATGCGCTTGATCAGATG 60.032 50.000 23.93 11.41 41.38 2.90
2050 2399 1.332686 TGAATGCGCTTGATCAGATGC 59.667 47.619 9.73 1.79 0.00 3.91
2051 2400 1.602851 GAATGCGCTTGATCAGATGCT 59.397 47.619 9.73 0.00 0.00 3.79
2052 2401 0.945099 ATGCGCTTGATCAGATGCTG 59.055 50.000 9.73 9.34 0.00 4.41
2053 2402 0.108041 TGCGCTTGATCAGATGCTGA 60.108 50.000 9.73 0.00 44.99 4.26
2054 2403 1.012086 GCGCTTGATCAGATGCTGAA 58.988 50.000 0.00 0.00 44.04 3.02
2055 2404 1.602851 GCGCTTGATCAGATGCTGAAT 59.397 47.619 0.00 0.00 44.04 2.57
2056 2405 2.033049 GCGCTTGATCAGATGCTGAATT 59.967 45.455 0.00 0.00 44.04 2.17
2057 2406 3.249320 GCGCTTGATCAGATGCTGAATTA 59.751 43.478 0.00 0.00 44.04 1.40
2058 2407 4.770287 CGCTTGATCAGATGCTGAATTAC 58.230 43.478 13.05 0.00 44.04 1.89
2059 2408 4.271776 CGCTTGATCAGATGCTGAATTACA 59.728 41.667 13.05 0.00 44.04 2.41
2060 2409 5.220719 CGCTTGATCAGATGCTGAATTACAA 60.221 40.000 13.05 5.69 44.04 2.41
2061 2410 6.558009 GCTTGATCAGATGCTGAATTACAAA 58.442 36.000 0.78 0.00 44.04 2.83
2062 2411 7.031372 GCTTGATCAGATGCTGAATTACAAAA 58.969 34.615 0.78 0.00 44.04 2.44
2063 2412 7.705325 GCTTGATCAGATGCTGAATTACAAAAT 59.295 33.333 0.78 0.00 44.04 1.82
2064 2413 9.582431 CTTGATCAGATGCTGAATTACAAAATT 57.418 29.630 0.78 0.00 44.04 1.82
2065 2414 9.932207 TTGATCAGATGCTGAATTACAAAATTT 57.068 25.926 0.78 0.00 44.04 1.82
2066 2415 9.361315 TGATCAGATGCTGAATTACAAAATTTG 57.639 29.630 3.89 3.89 44.04 2.32
2067 2416 8.712285 ATCAGATGCTGAATTACAAAATTTGG 57.288 30.769 10.71 0.00 44.04 3.28
2068 2417 7.894708 TCAGATGCTGAATTACAAAATTTGGA 58.105 30.769 10.71 0.00 37.57 3.53
2069 2418 8.533657 TCAGATGCTGAATTACAAAATTTGGAT 58.466 29.630 10.71 1.23 37.57 3.41
2070 2419 9.806203 CAGATGCTGAATTACAAAATTTGGATA 57.194 29.630 10.71 0.00 35.41 2.59
2074 2423 9.299963 TGCTGAATTACAAAATTTGGATATTCG 57.700 29.630 10.71 11.38 35.41 3.34
2075 2424 9.301153 GCTGAATTACAAAATTTGGATATTCGT 57.699 29.630 10.71 0.00 35.41 3.85
2081 2430 7.837202 ACAAAATTTGGATATTCGTAGACGA 57.163 32.000 10.71 0.00 39.98 4.20
2096 2445 6.889494 TCGTAGACGAAGAATAGCTAATCTG 58.111 40.000 12.10 3.61 46.30 2.90
2097 2446 5.566016 CGTAGACGAAGAATAGCTAATCTGC 59.434 44.000 12.10 9.33 43.02 4.26
2098 2447 5.782893 AGACGAAGAATAGCTAATCTGCT 57.217 39.130 12.10 5.28 46.11 4.24
2099 2448 5.527951 AGACGAAGAATAGCTAATCTGCTG 58.472 41.667 12.10 9.05 43.87 4.41
2100 2449 5.300539 AGACGAAGAATAGCTAATCTGCTGA 59.699 40.000 12.10 0.00 43.87 4.26
2101 2450 5.907207 ACGAAGAATAGCTAATCTGCTGAA 58.093 37.500 12.10 0.00 43.87 3.02
2102 2451 6.520272 ACGAAGAATAGCTAATCTGCTGAAT 58.480 36.000 12.10 0.00 43.87 2.57
2103 2452 6.423302 ACGAAGAATAGCTAATCTGCTGAATG 59.577 38.462 12.10 0.22 43.87 2.67
2104 2453 6.423302 CGAAGAATAGCTAATCTGCTGAATGT 59.577 38.462 12.10 0.00 43.87 2.71
2105 2454 7.493743 AAGAATAGCTAATCTGCTGAATGTG 57.506 36.000 12.10 0.00 43.87 3.21
2106 2455 5.469421 AGAATAGCTAATCTGCTGAATGTGC 59.531 40.000 10.61 0.00 43.87 4.57
2107 2456 3.278668 AGCTAATCTGCTGAATGTGCT 57.721 42.857 0.00 1.68 42.33 4.40
2108 2457 3.618351 AGCTAATCTGCTGAATGTGCTT 58.382 40.909 0.00 0.00 42.33 3.91
2109 2458 3.377485 AGCTAATCTGCTGAATGTGCTTG 59.623 43.478 0.00 0.00 42.33 4.01
2110 2459 3.376234 GCTAATCTGCTGAATGTGCTTGA 59.624 43.478 0.00 0.00 0.00 3.02
2111 2460 4.036498 GCTAATCTGCTGAATGTGCTTGAT 59.964 41.667 0.00 0.00 0.00 2.57
2112 2461 4.634184 AATCTGCTGAATGTGCTTGATC 57.366 40.909 0.00 0.00 0.00 2.92
2113 2462 3.345508 TCTGCTGAATGTGCTTGATCT 57.654 42.857 0.00 0.00 0.00 2.75
2114 2463 3.007635 TCTGCTGAATGTGCTTGATCTG 58.992 45.455 0.00 0.00 0.00 2.90
2115 2464 1.471287 TGCTGAATGTGCTTGATCTGC 59.529 47.619 0.00 0.00 37.30 4.26
2116 2465 1.743958 GCTGAATGTGCTTGATCTGCT 59.256 47.619 11.38 0.00 34.93 4.24
2117 2466 2.478031 GCTGAATGTGCTTGATCTGCTG 60.478 50.000 11.38 0.00 34.93 4.41
2118 2467 3.007635 CTGAATGTGCTTGATCTGCTGA 58.992 45.455 11.38 0.00 0.00 4.26
2119 2468 3.414269 TGAATGTGCTTGATCTGCTGAA 58.586 40.909 11.38 0.35 0.00 3.02
2120 2469 4.014406 TGAATGTGCTTGATCTGCTGAAT 58.986 39.130 11.38 2.22 0.00 2.57
2121 2470 4.461431 TGAATGTGCTTGATCTGCTGAATT 59.539 37.500 11.38 8.60 0.00 2.17
2122 2471 5.648960 TGAATGTGCTTGATCTGCTGAATTA 59.351 36.000 11.38 0.00 0.00 1.40
2123 2472 4.952262 TGTGCTTGATCTGCTGAATTAC 57.048 40.909 11.38 2.87 0.00 1.89
2124 2473 4.325972 TGTGCTTGATCTGCTGAATTACA 58.674 39.130 11.38 4.93 0.00 2.41
2125 2474 4.945543 TGTGCTTGATCTGCTGAATTACAT 59.054 37.500 11.38 0.00 0.00 2.29
2126 2475 5.416639 TGTGCTTGATCTGCTGAATTACATT 59.583 36.000 11.38 0.00 0.00 2.71
2127 2476 5.970023 GTGCTTGATCTGCTGAATTACATTC 59.030 40.000 11.38 0.00 39.70 2.67
2128 2477 5.884232 TGCTTGATCTGCTGAATTACATTCT 59.116 36.000 11.38 0.00 39.96 2.40
2129 2478 6.376299 TGCTTGATCTGCTGAATTACATTCTT 59.624 34.615 11.38 0.00 39.96 2.52
2130 2479 6.911511 GCTTGATCTGCTGAATTACATTCTTC 59.088 38.462 0.00 0.00 39.96 2.87
2131 2480 7.201714 GCTTGATCTGCTGAATTACATTCTTCT 60.202 37.037 0.00 0.00 39.96 2.85
2132 2481 8.571461 TTGATCTGCTGAATTACATTCTTCTT 57.429 30.769 0.00 0.00 39.96 2.52
2133 2482 8.571461 TGATCTGCTGAATTACATTCTTCTTT 57.429 30.769 0.00 0.00 39.96 2.52
2134 2483 8.456471 TGATCTGCTGAATTACATTCTTCTTTG 58.544 33.333 0.00 0.00 39.96 2.77
2135 2484 7.750229 TCTGCTGAATTACATTCTTCTTTGT 57.250 32.000 0.00 0.00 39.96 2.83
2136 2485 8.846943 TCTGCTGAATTACATTCTTCTTTGTA 57.153 30.769 0.00 0.00 39.96 2.41
2137 2486 9.453572 TCTGCTGAATTACATTCTTCTTTGTAT 57.546 29.630 0.00 0.00 39.96 2.29
2265 2616 6.702329 ACTAATCTTGTCTTCGGATTCTGTT 58.298 36.000 0.00 0.00 32.78 3.16
2270 2621 6.697395 TCTTGTCTTCGGATTCTGTTCATTA 58.303 36.000 0.00 0.00 0.00 1.90
2330 2681 6.930722 TGAAATCCCTGCAAAAGAAGAAATTC 59.069 34.615 0.00 0.00 0.00 2.17
3028 3930 3.057969 TGGCACAGGTACATCTTTCTG 57.942 47.619 0.00 0.00 0.00 3.02
3217 4128 1.521450 CTGCACCCAAGGCTTCACAG 61.521 60.000 0.00 0.00 0.00 3.66
3255 4166 0.036952 AGCTTCGCCCATATCCGATG 60.037 55.000 0.00 0.00 33.04 3.84
3257 4168 1.608025 GCTTCGCCCATATCCGATGAA 60.608 52.381 0.00 0.00 33.04 2.57
3258 4169 2.341257 CTTCGCCCATATCCGATGAAG 58.659 52.381 0.00 0.00 33.04 3.02
3266 4488 4.273480 CCCATATCCGATGAAGACAACAAC 59.727 45.833 0.00 0.00 0.00 3.32
3268 4490 2.519377 TCCGATGAAGACAACAACGT 57.481 45.000 0.00 0.00 33.10 3.99
3318 4541 0.320374 TGGGCAGCTGTGTAGTGTAC 59.680 55.000 16.64 0.00 0.00 2.90
3320 4543 1.673033 GGGCAGCTGTGTAGTGTACAG 60.673 57.143 16.64 0.00 46.37 2.74
3338 4563 9.909644 AGTGTACAGAATAATAGGCTAAATACG 57.090 33.333 0.00 0.00 0.00 3.06
3367 4595 8.024285 GGTATATACTGCTGATGTACTGACTTC 58.976 40.741 12.54 0.00 0.00 3.01
3393 4703 1.338020 CTCCTGTGTCTTTTGTTGGCC 59.662 52.381 0.00 0.00 0.00 5.36
3401 4711 3.186909 GTCTTTTGTTGGCCTGTGTTTC 58.813 45.455 3.32 0.00 0.00 2.78
3487 4846 2.072874 TTTGCTGAGCAGAGGGCCTT 62.073 55.000 7.89 0.00 46.50 4.35
3488 4847 2.072874 TTGCTGAGCAGAGGGCCTTT 62.073 55.000 7.89 0.00 46.50 3.11
3489 4848 1.748500 GCTGAGCAGAGGGCCTTTC 60.749 63.158 7.89 4.40 46.50 2.62
3490 4849 1.077858 CTGAGCAGAGGGCCTTTCC 60.078 63.158 7.89 0.00 46.50 3.13
3499 4898 3.626217 CAGAGGGCCTTTCCGTAATTAAC 59.374 47.826 7.89 0.00 34.94 2.01
3507 4906 4.874396 CCTTTCCGTAATTAACCTCCACTC 59.126 45.833 0.00 0.00 0.00 3.51
3524 4923 6.419484 TCCACTCTTCAGAAACTGAACATA 57.581 37.500 9.67 0.06 44.27 2.29
3528 4927 7.872993 CCACTCTTCAGAAACTGAACATAAGTA 59.127 37.037 9.67 0.00 44.27 2.24
3529 4928 8.704234 CACTCTTCAGAAACTGAACATAAGTAC 58.296 37.037 9.67 0.00 44.27 2.73
3530 4929 8.421784 ACTCTTCAGAAACTGAACATAAGTACA 58.578 33.333 9.67 0.00 44.27 2.90
3531 4930 8.589335 TCTTCAGAAACTGAACATAAGTACAC 57.411 34.615 9.67 0.00 44.27 2.90
3532 4931 8.201464 TCTTCAGAAACTGAACATAAGTACACA 58.799 33.333 9.67 0.00 44.27 3.72
3534 4933 8.534333 TCAGAAACTGAACATAAGTACACATC 57.466 34.615 0.00 0.00 37.57 3.06
3554 4979 7.965655 ACACATCGTATAAGATCGATCTCATTC 59.034 37.037 27.43 15.72 43.43 2.67
3555 4980 8.180920 CACATCGTATAAGATCGATCTCATTCT 58.819 37.037 27.43 14.39 43.43 2.40
3556 4981 8.394877 ACATCGTATAAGATCGATCTCATTCTC 58.605 37.037 27.43 14.49 43.43 2.87
3557 4982 7.907214 TCGTATAAGATCGATCTCATTCTCA 57.093 36.000 27.43 1.40 35.76 3.27
3560 4985 7.582319 CGTATAAGATCGATCTCATTCTCATCG 59.418 40.741 27.43 16.89 40.66 3.84
3562 4987 5.703978 AGATCGATCTCATTCTCATCGTT 57.296 39.130 22.32 0.00 40.28 3.85
3564 4989 3.375642 TCGATCTCATTCTCATCGTTGC 58.624 45.455 0.00 0.00 40.28 4.17
3568 4993 2.234661 TCTCATTCTCATCGTTGCTGGT 59.765 45.455 0.00 0.00 0.00 4.00
3569 4994 3.005554 CTCATTCTCATCGTTGCTGGTT 58.994 45.455 0.00 0.00 0.00 3.67
3570 4995 4.081697 TCTCATTCTCATCGTTGCTGGTTA 60.082 41.667 0.00 0.00 0.00 2.85
3574 4999 2.002586 CTCATCGTTGCTGGTTACCTG 58.997 52.381 2.07 3.00 0.00 4.00
3576 5001 2.563620 TCATCGTTGCTGGTTACCTGTA 59.436 45.455 9.93 2.49 0.00 2.74
3579 5004 2.366266 TCGTTGCTGGTTACCTGTAACT 59.634 45.455 28.21 0.00 42.43 2.24
3581 5006 3.059188 CGTTGCTGGTTACCTGTAACTTG 60.059 47.826 28.21 16.64 42.43 3.16
3596 5026 8.207545 ACCTGTAACTTGAGATAAGATCCATTC 58.792 37.037 0.00 0.00 0.00 2.67
3613 5043 9.573133 AGATCCATTCGTTTGATGTAAAAATTC 57.427 29.630 0.00 0.00 0.00 2.17
3614 5044 9.573133 GATCCATTCGTTTGATGTAAAAATTCT 57.427 29.630 0.00 0.00 0.00 2.40
3615 5045 8.964420 TCCATTCGTTTGATGTAAAAATTCTC 57.036 30.769 0.00 0.00 0.00 2.87
3644 5092 6.241207 ACTGACCTAATTTGTTGTCATTCG 57.759 37.500 0.00 0.00 37.14 3.34
3678 5172 4.121961 GAACTTGCGTTCTGAAGAAGAC 57.878 45.455 9.53 0.00 44.80 3.01
3679 5173 2.484889 ACTTGCGTTCTGAAGAAGACC 58.515 47.619 9.53 0.00 33.46 3.85
3681 5175 2.839486 TGCGTTCTGAAGAAGACCAT 57.161 45.000 0.00 0.00 33.46 3.55
3682 5176 3.126001 TGCGTTCTGAAGAAGACCATT 57.874 42.857 0.00 0.00 33.46 3.16
3683 5177 3.476552 TGCGTTCTGAAGAAGACCATTT 58.523 40.909 0.00 0.00 33.46 2.32
3684 5178 3.498397 TGCGTTCTGAAGAAGACCATTTC 59.502 43.478 0.00 0.00 33.46 2.17
3686 5180 4.377841 GCGTTCTGAAGAAGACCATTTCAG 60.378 45.833 7.04 7.04 45.70 3.02
3687 5181 4.153117 CGTTCTGAAGAAGACCATTTCAGG 59.847 45.833 12.05 0.00 44.88 3.86
3688 5182 4.292186 TCTGAAGAAGACCATTTCAGGG 57.708 45.455 12.05 0.00 44.88 4.45
3690 5184 3.754965 TGAAGAAGACCATTTCAGGGTG 58.245 45.455 0.00 0.00 39.19 4.61
3692 5186 3.425162 AGAAGACCATTTCAGGGTGAC 57.575 47.619 0.00 0.00 39.19 3.67
3693 5187 2.711009 AGAAGACCATTTCAGGGTGACA 59.289 45.455 0.00 0.00 39.19 3.58
3696 5190 2.711009 AGACCATTTCAGGGTGACAGAA 59.289 45.455 0.00 0.00 39.19 3.02
3697 5191 3.077359 GACCATTTCAGGGTGACAGAAG 58.923 50.000 0.00 0.00 39.19 2.85
3699 5193 3.077359 CCATTTCAGGGTGACAGAAGTC 58.923 50.000 0.00 0.00 45.19 3.01
3701 5195 1.801242 TTCAGGGTGACAGAAGTCCA 58.199 50.000 0.00 0.00 44.33 4.02
3702 5196 1.048601 TCAGGGTGACAGAAGTCCAC 58.951 55.000 0.00 0.00 44.33 4.02
3703 5197 0.035458 CAGGGTGACAGAAGTCCACC 59.965 60.000 0.00 0.00 44.33 4.61
3704 5198 1.004918 GGGTGACAGAAGTCCACCG 60.005 63.158 0.00 0.00 44.33 4.94
3705 5199 1.746517 GGTGACAGAAGTCCACCGT 59.253 57.895 0.00 0.00 44.33 4.83
3714 5265 3.799755 GTCCACCGTCCGCAATGC 61.800 66.667 0.00 0.00 0.00 3.56
3719 5270 2.279851 CCGTCCGCAATGCCGATA 60.280 61.111 0.00 0.00 0.00 2.92
3748 5299 7.993183 GGATTAGGATCTGAATGTTTTCCAGTA 59.007 37.037 0.00 0.00 32.66 2.74
3749 5300 9.396022 GATTAGGATCTGAATGTTTTCCAGTAA 57.604 33.333 0.00 0.00 0.00 2.24
3750 5301 8.561738 TTAGGATCTGAATGTTTTCCAGTAAC 57.438 34.615 0.00 0.00 0.00 2.50
3751 5302 6.784031 AGGATCTGAATGTTTTCCAGTAACT 58.216 36.000 0.00 0.00 0.00 2.24
3752 5303 6.881602 AGGATCTGAATGTTTTCCAGTAACTC 59.118 38.462 0.00 0.00 0.00 3.01
3753 5304 6.183360 GGATCTGAATGTTTTCCAGTAACTCG 60.183 42.308 0.00 0.00 0.00 4.18
3754 5305 5.607477 TCTGAATGTTTTCCAGTAACTCGT 58.393 37.500 0.00 0.00 0.00 4.18
3755 5306 6.053005 TCTGAATGTTTTCCAGTAACTCGTT 58.947 36.000 0.00 0.00 0.00 3.85
3756 5307 6.202188 TCTGAATGTTTTCCAGTAACTCGTTC 59.798 38.462 0.00 0.00 0.00 3.95
3758 5309 6.316640 TGAATGTTTTCCAGTAACTCGTTCAA 59.683 34.615 0.00 0.00 0.00 2.69
3759 5310 6.687081 ATGTTTTCCAGTAACTCGTTCAAA 57.313 33.333 0.00 0.00 0.00 2.69
3760 5311 6.497785 TGTTTTCCAGTAACTCGTTCAAAA 57.502 33.333 0.00 0.00 0.00 2.44
3761 5312 7.090953 TGTTTTCCAGTAACTCGTTCAAAAT 57.909 32.000 0.00 0.00 0.00 1.82
3762 5313 7.540299 TGTTTTCCAGTAACTCGTTCAAAATT 58.460 30.769 0.00 0.00 0.00 1.82
3763 5314 8.030106 TGTTTTCCAGTAACTCGTTCAAAATTT 58.970 29.630 0.00 0.00 0.00 1.82
3764 5315 8.529102 GTTTTCCAGTAACTCGTTCAAAATTTC 58.471 33.333 0.00 0.00 0.00 2.17
3766 5317 6.954944 TCCAGTAACTCGTTCAAAATTTCAG 58.045 36.000 0.00 0.00 0.00 3.02
3770 5324 7.373441 CAGTAACTCGTTCAAAATTTCAGACAC 59.627 37.037 0.00 0.00 0.00 3.67
3785 5339 1.478510 AGACACGCCACTCTATCTTGG 59.521 52.381 0.00 0.00 35.81 3.61
3786 5340 1.204941 GACACGCCACTCTATCTTGGT 59.795 52.381 0.00 0.00 35.09 3.67
3826 5412 0.539051 GCATACAGCAGTGACCTCCT 59.461 55.000 0.00 0.00 44.79 3.69
3837 5424 4.693095 GCAGTGACCTCCTTTTAGAAGAAG 59.307 45.833 0.00 0.00 34.71 2.85
3888 5484 3.080121 AGAGCAGCCGGGAAGAGG 61.080 66.667 2.18 0.00 0.00 3.69
3890 5486 3.378399 GAGCAGCCGGGAAGAGGAC 62.378 68.421 2.18 0.00 0.00 3.85
3891 5487 4.475135 GCAGCCGGGAAGAGGACC 62.475 72.222 2.18 0.00 0.00 4.46
3901 5512 1.087501 GAAGAGGACCGTGCATTTCC 58.912 55.000 0.00 0.00 0.00 3.13
4054 5672 2.503375 CGACGACCGTACCAGCAC 60.503 66.667 0.00 0.00 0.00 4.40
4055 5673 2.126189 GACGACCGTACCAGCACC 60.126 66.667 0.00 0.00 0.00 5.01
4056 5674 2.913578 ACGACCGTACCAGCACCA 60.914 61.111 0.00 0.00 0.00 4.17
4198 5831 2.117423 CCCAACAACCAGACCCCC 59.883 66.667 0.00 0.00 0.00 5.40
4207 5840 2.283809 CAGACCCCCTCGGATCCT 59.716 66.667 10.75 0.00 34.64 3.24
4256 5889 3.727726 GCATGTGGCCTTTTAAACAAGT 58.272 40.909 3.32 0.00 36.11 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 189 5.409826 AGATTAGAAGTGAGCACCGAAAAAG 59.590 40.000 0.00 0.00 0.00 2.27
57 190 5.305585 AGATTAGAAGTGAGCACCGAAAAA 58.694 37.500 0.00 0.00 0.00 1.94
58 191 4.894784 AGATTAGAAGTGAGCACCGAAAA 58.105 39.130 0.00 0.00 0.00 2.29
59 192 4.537135 AGATTAGAAGTGAGCACCGAAA 57.463 40.909 0.00 0.00 0.00 3.46
60 193 4.220821 AGAAGATTAGAAGTGAGCACCGAA 59.779 41.667 0.00 0.00 0.00 4.30
61 194 3.764434 AGAAGATTAGAAGTGAGCACCGA 59.236 43.478 0.00 0.00 0.00 4.69
62 195 3.862267 CAGAAGATTAGAAGTGAGCACCG 59.138 47.826 0.00 0.00 0.00 4.94
63 196 4.629200 CACAGAAGATTAGAAGTGAGCACC 59.371 45.833 0.00 0.00 0.00 5.01
64 197 4.092675 GCACAGAAGATTAGAAGTGAGCAC 59.907 45.833 0.00 0.00 0.00 4.40
65 198 4.248859 GCACAGAAGATTAGAAGTGAGCA 58.751 43.478 0.00 0.00 0.00 4.26
66 199 4.092675 GTGCACAGAAGATTAGAAGTGAGC 59.907 45.833 13.17 0.00 0.00 4.26
67 200 5.119898 GTGTGCACAGAAGATTAGAAGTGAG 59.880 44.000 22.40 0.00 0.00 3.51
68 201 4.991056 GTGTGCACAGAAGATTAGAAGTGA 59.009 41.667 22.40 0.00 0.00 3.41
69 202 4.993584 AGTGTGCACAGAAGATTAGAAGTG 59.006 41.667 22.40 0.00 0.00 3.16
70 203 5.220710 AGTGTGCACAGAAGATTAGAAGT 57.779 39.130 22.40 0.00 0.00 3.01
71 204 5.233225 TGAGTGTGCACAGAAGATTAGAAG 58.767 41.667 22.40 0.00 0.00 2.85
72 205 5.213891 TGAGTGTGCACAGAAGATTAGAA 57.786 39.130 22.40 0.00 0.00 2.10
73 206 4.871933 TGAGTGTGCACAGAAGATTAGA 57.128 40.909 22.40 0.00 0.00 2.10
74 207 4.751600 TGTTGAGTGTGCACAGAAGATTAG 59.248 41.667 22.40 0.00 0.00 1.73
75 208 4.702831 TGTTGAGTGTGCACAGAAGATTA 58.297 39.130 22.40 1.38 0.00 1.75
76 209 3.544684 TGTTGAGTGTGCACAGAAGATT 58.455 40.909 22.40 1.51 0.00 2.40
77 210 3.198409 TGTTGAGTGTGCACAGAAGAT 57.802 42.857 22.40 3.81 0.00 2.40
78 211 2.677836 GTTGTTGAGTGTGCACAGAAGA 59.322 45.455 22.40 9.27 0.00 2.87
79 212 2.419673 TGTTGTTGAGTGTGCACAGAAG 59.580 45.455 22.40 0.00 0.00 2.85
84 217 0.248054 CGGTGTTGTTGAGTGTGCAC 60.248 55.000 10.75 10.75 0.00 4.57
137 299 4.399934 GCCATGGTCCCTTAACGAAATTTA 59.600 41.667 14.67 0.00 0.00 1.40
138 300 3.194755 GCCATGGTCCCTTAACGAAATTT 59.805 43.478 14.67 0.00 0.00 1.82
141 303 1.074084 TGCCATGGTCCCTTAACGAAA 59.926 47.619 14.67 0.00 0.00 3.46
142 304 0.693622 TGCCATGGTCCCTTAACGAA 59.306 50.000 14.67 0.00 0.00 3.85
144 306 1.472480 CTTTGCCATGGTCCCTTAACG 59.528 52.381 14.67 0.00 0.00 3.18
145 307 1.204704 GCTTTGCCATGGTCCCTTAAC 59.795 52.381 14.67 0.00 0.00 2.01
146 308 1.555967 GCTTTGCCATGGTCCCTTAA 58.444 50.000 14.67 0.00 0.00 1.85
148 310 1.978617 CGCTTTGCCATGGTCCCTT 60.979 57.895 14.67 0.00 0.00 3.95
149 311 2.361610 CGCTTTGCCATGGTCCCT 60.362 61.111 14.67 0.00 0.00 4.20
163 325 7.592533 GCATATATTGTCATGAAAATGTTCGCT 59.407 33.333 19.62 0.00 36.46 4.93
166 328 8.786937 ACGCATATATTGTCATGAAAATGTTC 57.213 30.769 19.62 6.62 0.00 3.18
170 332 7.014134 TCCCAACGCATATATTGTCATGAAAAT 59.986 33.333 15.43 15.43 0.00 1.82
176 338 4.973168 ACTCCCAACGCATATATTGTCAT 58.027 39.130 0.00 0.00 0.00 3.06
179 341 5.865085 ACATACTCCCAACGCATATATTGT 58.135 37.500 0.00 0.00 0.00 2.71
184 346 4.415881 TTGACATACTCCCAACGCATAT 57.584 40.909 0.00 0.00 0.00 1.78
192 354 5.415701 GCTTGAAGAAATTGACATACTCCCA 59.584 40.000 0.00 0.00 0.00 4.37
202 364 4.358851 CCACGTTTGCTTGAAGAAATTGA 58.641 39.130 0.00 0.00 0.00 2.57
217 379 3.807071 GGATTTGTCAAATTGCCACGTTT 59.193 39.130 12.04 0.00 0.00 3.60
219 381 2.627699 AGGATTTGTCAAATTGCCACGT 59.372 40.909 12.04 0.00 0.00 4.49
220 382 3.057315 AGAGGATTTGTCAAATTGCCACG 60.057 43.478 12.04 0.00 0.00 4.94
221 383 4.525912 AGAGGATTTGTCAAATTGCCAC 57.474 40.909 12.04 8.39 0.00 5.01
222 384 5.183713 CAGTAGAGGATTTGTCAAATTGCCA 59.816 40.000 12.04 0.00 0.00 4.92
223 385 5.644644 CAGTAGAGGATTTGTCAAATTGCC 58.355 41.667 12.04 9.58 0.00 4.52
224 386 5.098211 GCAGTAGAGGATTTGTCAAATTGC 58.902 41.667 12.04 11.56 0.00 3.56
225 387 5.183713 TGGCAGTAGAGGATTTGTCAAATTG 59.816 40.000 12.04 6.00 0.00 2.32
231 393 5.904362 ATTTTGGCAGTAGAGGATTTGTC 57.096 39.130 0.00 0.00 0.00 3.18
279 443 3.568007 GGCAGGTTCTTCAAACACACATA 59.432 43.478 0.00 0.00 0.00 2.29
310 474 1.444212 GCATGGCATTTGCGAACGT 60.444 52.632 0.00 0.00 43.26 3.99
330 494 0.893270 CCAACGAACATTCCCTGCCA 60.893 55.000 0.00 0.00 0.00 4.92
331 495 0.893727 ACCAACGAACATTCCCTGCC 60.894 55.000 0.00 0.00 0.00 4.85
335 499 3.507786 GCAATAACCAACGAACATTCCC 58.492 45.455 0.00 0.00 0.00 3.97
340 504 1.532007 GACCGCAATAACCAACGAACA 59.468 47.619 0.00 0.00 0.00 3.18
402 570 1.464608 CGTTGCGAATGTTCATCCAGT 59.535 47.619 0.00 0.00 0.00 4.00
423 596 8.635877 AAGAAAGTTTATATACTCTGAGCACG 57.364 34.615 4.19 0.00 0.00 5.34
443 616 7.766738 TGCGAATCATATGTTGGTACTAAGAAA 59.233 33.333 1.90 0.00 0.00 2.52
449 622 4.273480 GCTTGCGAATCATATGTTGGTACT 59.727 41.667 1.90 0.00 0.00 2.73
480 653 1.216977 CCACAGTATTCCGCCACGA 59.783 57.895 0.00 0.00 0.00 4.35
482 655 1.066716 TGTACCACAGTATTCCGCCAC 60.067 52.381 0.00 0.00 0.00 5.01
483 656 1.268066 TGTACCACAGTATTCCGCCA 58.732 50.000 0.00 0.00 0.00 5.69
501 674 7.823745 AGGCTAATCTGGTACCAAATAAATG 57.176 36.000 17.11 2.11 0.00 2.32
505 678 5.012768 GGCTAGGCTAATCTGGTACCAAATA 59.987 44.000 17.11 8.26 0.00 1.40
507 680 3.135895 GGCTAGGCTAATCTGGTACCAAA 59.864 47.826 17.11 2.20 0.00 3.28
517 690 4.889995 ACCAAAGAAATGGCTAGGCTAATC 59.110 41.667 18.18 11.93 44.75 1.75
552 725 9.734620 CAAAAATATGAAACTCAGTTGTCAAGA 57.265 29.630 0.00 0.00 0.00 3.02
568 741 5.714806 GTCAAGGTTCCCCTCAAAAATATGA 59.285 40.000 0.00 0.00 41.56 2.15
569 742 5.716703 AGTCAAGGTTCCCCTCAAAAATATG 59.283 40.000 0.00 0.00 41.56 1.78
570 743 5.716703 CAGTCAAGGTTCCCCTCAAAAATAT 59.283 40.000 0.00 0.00 41.56 1.28
571 744 5.076873 CAGTCAAGGTTCCCCTCAAAAATA 58.923 41.667 0.00 0.00 41.56 1.40
572 745 3.897505 CAGTCAAGGTTCCCCTCAAAAAT 59.102 43.478 0.00 0.00 41.56 1.82
605 778 6.319658 TGGCTTTCTAAAAAGGATAGCTGATG 59.680 38.462 0.00 0.00 41.87 3.07
606 779 6.426587 TGGCTTTCTAAAAAGGATAGCTGAT 58.573 36.000 0.00 0.00 41.87 2.90
608 781 6.705863 ATGGCTTTCTAAAAAGGATAGCTG 57.294 37.500 0.00 0.00 41.87 4.24
609 782 8.823220 TTTATGGCTTTCTAAAAAGGATAGCT 57.177 30.769 0.00 0.00 41.87 3.32
627 800 5.351948 TTGAGGGGCTAAAAATTTATGGC 57.648 39.130 0.00 0.00 0.00 4.40
653 826 3.420482 CCTCCCTGGGCCGGAATT 61.420 66.667 15.75 0.00 0.00 2.17
675 848 2.235570 GGCTCTATGGGCCTTCCTT 58.764 57.895 4.53 0.00 45.57 3.36
697 870 2.488710 CCCACGGTTTTAGGGTTTGGTA 60.489 50.000 0.00 0.00 37.81 3.25
721 894 3.131400 GGAGAAGAGATTAGAGCCGTTGT 59.869 47.826 0.00 0.00 0.00 3.32
739 912 2.044555 CGGCTAGTCACCACGGAGA 61.045 63.158 0.00 0.00 0.00 3.71
740 913 1.874345 AACGGCTAGTCACCACGGAG 61.874 60.000 0.00 0.00 0.00 4.63
748 921 2.260434 GGACGCAACGGCTAGTCA 59.740 61.111 0.00 0.00 38.10 3.41
800 973 2.224769 TGTGAGGTTCAGGGATTTGACC 60.225 50.000 0.00 0.00 0.00 4.02
882 1058 2.909965 ATCGGGAGCGAGAGAGGC 60.910 66.667 0.00 0.00 0.00 4.70
885 1061 0.394488 AACAGATCGGGAGCGAGAGA 60.394 55.000 0.00 0.00 0.00 3.10
892 1071 2.322355 AGCAATCAACAGATCGGGAG 57.678 50.000 0.00 0.00 0.00 4.30
895 1074 1.741706 AGCAAGCAATCAACAGATCGG 59.258 47.619 0.00 0.00 0.00 4.18
914 1093 3.632855 TCAACAGATCGATCGGATGAG 57.367 47.619 26.39 15.57 34.82 2.90
951 1130 3.503363 AGCAGAAATCGCAACAGAAATCA 59.497 39.130 0.00 0.00 0.00 2.57
952 1131 3.850273 CAGCAGAAATCGCAACAGAAATC 59.150 43.478 0.00 0.00 0.00 2.17
953 1132 3.254166 ACAGCAGAAATCGCAACAGAAAT 59.746 39.130 0.00 0.00 0.00 2.17
955 1134 2.221169 ACAGCAGAAATCGCAACAGAA 58.779 42.857 0.00 0.00 0.00 3.02
957 1136 2.693797 AACAGCAGAAATCGCAACAG 57.306 45.000 0.00 0.00 0.00 3.16
958 1137 2.098934 ACAAACAGCAGAAATCGCAACA 59.901 40.909 0.00 0.00 0.00 3.33
1457 1672 2.028484 TCGGCAGCGAAGACGTTT 59.972 55.556 2.72 0.00 41.98 3.60
1564 1790 4.583489 TGCTACTACACCTATAGCTCCAAC 59.417 45.833 0.00 0.00 41.58 3.77
1617 1859 4.905369 GCAGACTGCAATTGTCAATCAGAC 60.905 45.833 22.62 12.37 44.26 3.51
1619 1861 3.499048 GCAGACTGCAATTGTCAATCAG 58.501 45.455 22.62 11.05 44.26 2.90
1728 1987 0.902984 AGTACATGGTGTCGCCCAGA 60.903 55.000 0.00 0.00 38.07 3.86
1758 2017 3.433314 GCTCAGATGTTGATCCACTGGAT 60.433 47.826 10.61 10.61 46.28 3.41
1770 2029 3.482156 ACTGTCACAAGCTCAGATGTT 57.518 42.857 6.38 0.00 33.93 2.71
1926 2196 9.906660 TTGGACACATAAATAACATTTTCTGAC 57.093 29.630 0.00 0.00 0.00 3.51
1948 2218 2.542020 TCTGATCAAGCACGTTTGGA 57.458 45.000 0.00 0.00 0.00 3.53
1955 2225 4.634184 AATTCAGCATCTGATCAAGCAC 57.366 40.909 14.53 0.00 40.39 4.40
2010 2359 8.667463 GCATTCAGGCACATAAATAACATTTTT 58.333 29.630 0.00 0.00 0.00 1.94
2011 2360 7.010367 CGCATTCAGGCACATAAATAACATTTT 59.990 33.333 0.00 0.00 0.00 1.82
2012 2361 6.476380 CGCATTCAGGCACATAAATAACATTT 59.524 34.615 0.00 0.00 0.00 2.32
2013 2362 5.978919 CGCATTCAGGCACATAAATAACATT 59.021 36.000 0.00 0.00 0.00 2.71
2014 2363 5.522456 CGCATTCAGGCACATAAATAACAT 58.478 37.500 0.00 0.00 0.00 2.71
2015 2364 4.733230 GCGCATTCAGGCACATAAATAACA 60.733 41.667 0.30 0.00 0.00 2.41
2016 2365 3.730715 GCGCATTCAGGCACATAAATAAC 59.269 43.478 0.30 0.00 0.00 1.89
2017 2366 3.631686 AGCGCATTCAGGCACATAAATAA 59.368 39.130 11.47 0.00 0.00 1.40
2018 2367 3.213506 AGCGCATTCAGGCACATAAATA 58.786 40.909 11.47 0.00 0.00 1.40
2019 2368 2.026641 AGCGCATTCAGGCACATAAAT 58.973 42.857 11.47 0.00 0.00 1.40
2020 2369 1.462616 AGCGCATTCAGGCACATAAA 58.537 45.000 11.47 0.00 0.00 1.40
2021 2370 1.132834 CAAGCGCATTCAGGCACATAA 59.867 47.619 11.47 0.00 0.00 1.90
2022 2371 0.734309 CAAGCGCATTCAGGCACATA 59.266 50.000 11.47 0.00 0.00 2.29
2023 2372 0.961857 TCAAGCGCATTCAGGCACAT 60.962 50.000 11.47 0.00 0.00 3.21
2024 2373 0.961857 ATCAAGCGCATTCAGGCACA 60.962 50.000 11.47 0.00 0.00 4.57
2025 2374 0.248377 GATCAAGCGCATTCAGGCAC 60.248 55.000 11.47 0.00 0.00 5.01
2026 2375 0.677414 TGATCAAGCGCATTCAGGCA 60.677 50.000 11.47 0.00 0.00 4.75
2027 2376 0.029035 CTGATCAAGCGCATTCAGGC 59.971 55.000 11.47 0.00 33.54 4.85
2028 2377 1.660167 TCTGATCAAGCGCATTCAGG 58.340 50.000 21.02 9.12 36.95 3.86
2029 2378 2.602456 GCATCTGATCAAGCGCATTCAG 60.602 50.000 11.47 15.50 37.52 3.02
2030 2379 1.332686 GCATCTGATCAAGCGCATTCA 59.667 47.619 11.47 5.79 0.00 2.57
2031 2380 1.602851 AGCATCTGATCAAGCGCATTC 59.397 47.619 11.47 0.58 0.00 2.67
2032 2381 1.333931 CAGCATCTGATCAAGCGCATT 59.666 47.619 11.47 0.00 32.44 3.56
2033 2382 0.945099 CAGCATCTGATCAAGCGCAT 59.055 50.000 11.47 0.00 32.44 4.73
2034 2383 0.108041 TCAGCATCTGATCAAGCGCA 60.108 50.000 11.47 0.00 35.39 6.09
2035 2384 1.012086 TTCAGCATCTGATCAAGCGC 58.988 50.000 0.00 0.00 40.39 5.92
2036 2385 3.965292 AATTCAGCATCTGATCAAGCG 57.035 42.857 0.00 0.00 40.39 4.68
2037 2386 5.746307 TGTAATTCAGCATCTGATCAAGC 57.254 39.130 0.00 1.40 40.39 4.01
2038 2387 9.582431 AATTTTGTAATTCAGCATCTGATCAAG 57.418 29.630 0.00 0.00 40.39 3.02
2039 2388 9.932207 AAATTTTGTAATTCAGCATCTGATCAA 57.068 25.926 0.00 0.49 40.39 2.57
2040 2389 9.361315 CAAATTTTGTAATTCAGCATCTGATCA 57.639 29.630 0.00 0.00 40.39 2.92
2041 2390 8.814235 CCAAATTTTGTAATTCAGCATCTGATC 58.186 33.333 8.26 0.00 40.39 2.92
2042 2391 8.533657 TCCAAATTTTGTAATTCAGCATCTGAT 58.466 29.630 8.26 0.00 40.39 2.90
2043 2392 7.894708 TCCAAATTTTGTAATTCAGCATCTGA 58.105 30.769 8.26 0.00 38.87 3.27
2044 2393 8.712285 ATCCAAATTTTGTAATTCAGCATCTG 57.288 30.769 8.26 0.00 32.85 2.90
2048 2397 9.299963 CGAATATCCAAATTTTGTAATTCAGCA 57.700 29.630 18.43 0.00 32.85 4.41
2049 2398 9.301153 ACGAATATCCAAATTTTGTAATTCAGC 57.699 29.630 18.43 0.00 32.85 4.26
2055 2404 9.368674 TCGTCTACGAATATCCAAATTTTGTAA 57.631 29.630 2.10 0.00 46.30 2.41
2056 2405 8.929827 TCGTCTACGAATATCCAAATTTTGTA 57.070 30.769 2.10 0.00 46.30 2.41
2057 2406 7.837202 TCGTCTACGAATATCCAAATTTTGT 57.163 32.000 2.10 0.00 46.30 2.83
2072 2421 8.643390 AGCAGATTAGCTATTCTTCGTCTACGA 61.643 40.741 14.13 0.14 44.50 3.43
2073 2422 5.566016 GCAGATTAGCTATTCTTCGTCTACG 59.434 44.000 14.13 0.00 41.45 3.51
2074 2423 6.580791 CAGCAGATTAGCTATTCTTCGTCTAC 59.419 42.308 14.13 1.42 44.54 2.59
2075 2424 6.486993 TCAGCAGATTAGCTATTCTTCGTCTA 59.513 38.462 14.13 0.00 44.54 2.59
2076 2425 5.300539 TCAGCAGATTAGCTATTCTTCGTCT 59.699 40.000 14.13 7.64 44.54 4.18
2077 2426 5.524284 TCAGCAGATTAGCTATTCTTCGTC 58.476 41.667 14.13 5.90 44.54 4.20
2078 2427 5.521906 TCAGCAGATTAGCTATTCTTCGT 57.478 39.130 14.13 1.59 44.54 3.85
2079 2428 6.423302 ACATTCAGCAGATTAGCTATTCTTCG 59.577 38.462 14.13 6.93 44.54 3.79
2080 2429 7.574496 CACATTCAGCAGATTAGCTATTCTTC 58.426 38.462 14.13 10.47 44.54 2.87
2081 2430 6.017275 GCACATTCAGCAGATTAGCTATTCTT 60.017 38.462 14.13 0.62 44.54 2.52
2082 2431 5.469421 GCACATTCAGCAGATTAGCTATTCT 59.531 40.000 11.54 11.54 44.54 2.40
2083 2432 5.469421 AGCACATTCAGCAGATTAGCTATTC 59.531 40.000 7.43 7.43 44.54 1.75
2084 2433 5.374921 AGCACATTCAGCAGATTAGCTATT 58.625 37.500 0.00 0.00 44.54 1.73
2085 2434 4.970711 AGCACATTCAGCAGATTAGCTAT 58.029 39.130 0.00 0.00 44.54 2.97
2086 2435 4.412796 AGCACATTCAGCAGATTAGCTA 57.587 40.909 0.00 0.00 44.54 3.32
2088 2437 3.376234 TCAAGCACATTCAGCAGATTAGC 59.624 43.478 0.00 0.00 0.00 3.09
2089 2438 5.527951 AGATCAAGCACATTCAGCAGATTAG 59.472 40.000 0.00 0.00 31.93 1.73
2090 2439 5.296035 CAGATCAAGCACATTCAGCAGATTA 59.704 40.000 0.00 0.00 31.93 1.75
2091 2440 4.096532 CAGATCAAGCACATTCAGCAGATT 59.903 41.667 0.00 0.00 31.93 2.40
2092 2441 3.628032 CAGATCAAGCACATTCAGCAGAT 59.372 43.478 0.00 0.00 33.61 2.90
2093 2442 3.007635 CAGATCAAGCACATTCAGCAGA 58.992 45.455 0.00 0.00 0.00 4.26
2094 2443 2.478031 GCAGATCAAGCACATTCAGCAG 60.478 50.000 5.41 0.00 0.00 4.24
2095 2444 1.471287 GCAGATCAAGCACATTCAGCA 59.529 47.619 5.41 0.00 0.00 4.41
2096 2445 1.743958 AGCAGATCAAGCACATTCAGC 59.256 47.619 11.97 0.00 0.00 4.26
2097 2446 3.007635 TCAGCAGATCAAGCACATTCAG 58.992 45.455 11.97 0.00 0.00 3.02
2098 2447 3.062122 TCAGCAGATCAAGCACATTCA 57.938 42.857 11.97 0.00 0.00 2.57
2099 2448 4.634184 ATTCAGCAGATCAAGCACATTC 57.366 40.909 11.97 0.00 0.00 2.67
2100 2449 5.416639 TGTAATTCAGCAGATCAAGCACATT 59.583 36.000 11.97 8.88 0.00 2.71
2101 2450 4.945543 TGTAATTCAGCAGATCAAGCACAT 59.054 37.500 11.97 0.00 0.00 3.21
2102 2451 4.325972 TGTAATTCAGCAGATCAAGCACA 58.674 39.130 11.97 4.37 0.00 4.57
2103 2452 4.952262 TGTAATTCAGCAGATCAAGCAC 57.048 40.909 11.97 2.13 0.00 4.40
2140 2489 8.630054 TTTTTAATGCTGGACAGTGTATAACT 57.370 30.769 0.00 0.00 40.93 2.24
2172 2521 4.280425 TCAAGCACATTCAGGCACATAAAA 59.720 37.500 0.00 0.00 0.00 1.52
2236 2587 9.892130 AGAATCCGAAGACAAGATTAGTTATTT 57.108 29.630 0.00 0.00 30.52 1.40
3217 4128 3.044059 GCTGCTGAACATGCCGGAC 62.044 63.158 5.05 0.00 0.00 4.79
3255 4166 5.006746 AGAGATTGTTCACGTTGTTGTCTTC 59.993 40.000 0.00 0.00 0.00 2.87
3257 4168 4.442706 AGAGATTGTTCACGTTGTTGTCT 58.557 39.130 0.00 0.00 0.00 3.41
3258 4169 4.795970 AGAGATTGTTCACGTTGTTGTC 57.204 40.909 0.00 0.00 0.00 3.18
3266 4488 4.058124 TCCAGTTCAAGAGATTGTTCACG 58.942 43.478 0.00 0.00 0.00 4.35
3268 4490 6.825213 CCATATCCAGTTCAAGAGATTGTTCA 59.175 38.462 0.00 0.00 0.00 3.18
3318 4541 7.159372 ACCCACGTATTTAGCCTATTATTCTG 58.841 38.462 0.00 0.00 0.00 3.02
3338 4563 6.208797 TCAGTACATCAGCAGTATATACCCAC 59.791 42.308 9.32 0.00 0.00 4.61
3367 4595 1.605710 CAAAAGACACAGGAGGCAGTG 59.394 52.381 0.00 0.00 41.40 3.66
3393 4703 4.798387 GCACACAAAGTAAAGGAAACACAG 59.202 41.667 0.00 0.00 0.00 3.66
3401 4711 6.017400 AGATGAATGCACACAAAGTAAAGG 57.983 37.500 0.00 0.00 0.00 3.11
3483 4821 3.376234 GTGGAGGTTAATTACGGAAAGGC 59.624 47.826 0.00 0.00 0.00 4.35
3487 4846 5.246656 TGAAGAGTGGAGGTTAATTACGGAA 59.753 40.000 0.00 0.00 0.00 4.30
3488 4847 4.773674 TGAAGAGTGGAGGTTAATTACGGA 59.226 41.667 0.00 0.00 0.00 4.69
3489 4848 5.080969 TGAAGAGTGGAGGTTAATTACGG 57.919 43.478 0.00 0.00 0.00 4.02
3490 4849 5.962433 TCTGAAGAGTGGAGGTTAATTACG 58.038 41.667 0.00 0.00 0.00 3.18
3499 4898 4.342862 TTCAGTTTCTGAAGAGTGGAGG 57.657 45.455 7.92 0.00 44.27 4.30
3524 4923 8.325421 AGATCGATCTTATACGATGTGTACTT 57.675 34.615 22.32 0.00 46.71 2.24
3528 4927 6.803154 TGAGATCGATCTTATACGATGTGT 57.197 37.500 27.90 1.92 46.71 3.72
3529 4928 8.180920 AGAATGAGATCGATCTTATACGATGTG 58.819 37.037 27.26 0.00 46.71 3.21
3530 4929 8.275015 AGAATGAGATCGATCTTATACGATGT 57.725 34.615 27.26 14.34 46.71 3.06
3531 4930 8.394121 TGAGAATGAGATCGATCTTATACGATG 58.606 37.037 27.26 0.00 46.71 3.84
3534 4933 7.582319 CGATGAGAATGAGATCGATCTTATACG 59.418 40.741 27.26 20.66 37.25 3.06
3554 4979 2.002586 CAGGTAACCAGCAACGATGAG 58.997 52.381 0.00 0.00 37.17 2.90
3555 4980 1.346395 ACAGGTAACCAGCAACGATGA 59.654 47.619 0.00 0.00 37.17 2.92
3556 4981 1.808411 ACAGGTAACCAGCAACGATG 58.192 50.000 0.00 0.00 37.17 3.84
3557 4982 3.007614 AGTTACAGGTAACCAGCAACGAT 59.992 43.478 16.45 0.00 44.79 3.73
3560 4985 4.131596 TCAAGTTACAGGTAACCAGCAAC 58.868 43.478 16.45 0.00 44.79 4.17
3562 4987 3.644265 TCTCAAGTTACAGGTAACCAGCA 59.356 43.478 16.45 1.22 44.79 4.41
3564 4989 7.837863 TCTTATCTCAAGTTACAGGTAACCAG 58.162 38.462 16.45 11.19 44.79 4.00
3568 4993 8.603898 TGGATCTTATCTCAAGTTACAGGTAA 57.396 34.615 0.00 0.00 0.00 2.85
3569 4994 8.783660 ATGGATCTTATCTCAAGTTACAGGTA 57.216 34.615 0.00 0.00 0.00 3.08
3570 4995 7.682787 ATGGATCTTATCTCAAGTTACAGGT 57.317 36.000 0.00 0.00 0.00 4.00
3574 4999 8.649973 AACGAATGGATCTTATCTCAAGTTAC 57.350 34.615 0.00 0.00 0.00 2.50
3576 5001 7.824289 TCAAACGAATGGATCTTATCTCAAGTT 59.176 33.333 0.00 0.00 0.00 2.66
3579 5004 7.770433 ACATCAAACGAATGGATCTTATCTCAA 59.230 33.333 0.00 0.00 0.00 3.02
3581 5006 7.721286 ACATCAAACGAATGGATCTTATCTC 57.279 36.000 0.00 0.00 0.00 2.75
3618 5066 8.450964 CGAATGACAACAAATTAGGTCAGTTAT 58.549 33.333 0.00 0.37 42.83 1.89
3620 5068 6.293955 CCGAATGACAACAAATTAGGTCAGTT 60.294 38.462 0.00 0.00 42.83 3.16
3626 5074 6.007936 TCAACCGAATGACAACAAATTAGG 57.992 37.500 0.00 0.00 35.40 2.69
3627 5075 8.023128 AGATTCAACCGAATGACAACAAATTAG 58.977 33.333 0.00 0.00 42.06 1.73
3637 5085 5.869888 AGTTCAGTAGATTCAACCGAATGAC 59.130 40.000 0.00 0.00 42.06 3.06
3639 5087 6.537566 CAAGTTCAGTAGATTCAACCGAATG 58.462 40.000 0.00 0.00 42.06 2.67
3640 5088 5.122396 GCAAGTTCAGTAGATTCAACCGAAT 59.878 40.000 0.00 0.00 44.75 3.34
3643 5091 3.181530 CGCAAGTTCAGTAGATTCAACCG 60.182 47.826 0.00 0.00 0.00 4.44
3644 5092 4.327854 CGCAAGTTCAGTAGATTCAACC 57.672 45.455 0.00 0.00 0.00 3.77
3675 5169 2.338809 TCTGTCACCCTGAAATGGTCT 58.661 47.619 0.00 0.00 29.84 3.85
3678 5172 3.077359 GACTTCTGTCACCCTGAAATGG 58.923 50.000 0.00 0.00 42.48 3.16
3679 5173 3.077359 GGACTTCTGTCACCCTGAAATG 58.923 50.000 0.00 0.00 44.61 2.32
3681 5175 2.123589 TGGACTTCTGTCACCCTGAAA 58.876 47.619 0.00 0.00 44.61 2.69
3682 5176 1.416401 GTGGACTTCTGTCACCCTGAA 59.584 52.381 0.00 0.00 44.61 3.02
3683 5177 1.048601 GTGGACTTCTGTCACCCTGA 58.951 55.000 0.00 0.00 44.61 3.86
3684 5178 0.035458 GGTGGACTTCTGTCACCCTG 59.965 60.000 0.00 0.00 44.61 4.45
3686 5180 1.004918 CGGTGGACTTCTGTCACCC 60.005 63.158 6.19 0.00 44.61 4.61
3687 5181 0.319641 GACGGTGGACTTCTGTCACC 60.320 60.000 0.00 0.00 44.61 4.02
3688 5182 0.319641 GGACGGTGGACTTCTGTCAC 60.320 60.000 7.11 0.00 44.61 3.67
3690 5184 1.080705 CGGACGGTGGACTTCTGTC 60.081 63.158 0.00 0.00 42.22 3.51
3692 5186 2.432628 GCGGACGGTGGACTTCTG 60.433 66.667 0.00 0.00 0.00 3.02
3693 5187 1.827399 ATTGCGGACGGTGGACTTCT 61.827 55.000 0.00 0.00 0.00 2.85
3696 5190 2.047274 CATTGCGGACGGTGGACT 60.047 61.111 0.00 0.00 0.00 3.85
3697 5191 3.799755 GCATTGCGGACGGTGGAC 61.800 66.667 0.00 0.00 0.00 4.02
3701 5195 2.377628 ATATCGGCATTGCGGACGGT 62.378 55.000 19.57 8.69 40.43 4.83
3702 5196 1.626654 GATATCGGCATTGCGGACGG 61.627 60.000 19.57 0.00 40.43 4.79
3703 5197 1.781555 GATATCGGCATTGCGGACG 59.218 57.895 19.57 9.89 40.43 4.79
3704 5198 1.781555 CGATATCGGCATTGCGGAC 59.218 57.895 19.57 7.89 40.43 4.79
3705 5199 4.260194 CGATATCGGCATTGCGGA 57.740 55.556 19.48 19.48 41.73 5.54
3719 5270 6.712547 GGAAAACATTCAGATCCTAATCCGAT 59.287 38.462 0.00 0.00 31.78 4.18
3723 5274 7.872113 ACTGGAAAACATTCAGATCCTAATC 57.128 36.000 0.00 0.00 33.19 1.75
3748 5299 5.263185 CGTGTCTGAAATTTTGAACGAGTT 58.737 37.500 15.57 0.00 31.76 3.01
3749 5300 4.785341 GCGTGTCTGAAATTTTGAACGAGT 60.785 41.667 19.91 0.00 31.76 4.18
3750 5301 3.659444 GCGTGTCTGAAATTTTGAACGAG 59.341 43.478 19.91 9.03 31.76 4.18
3751 5302 3.547214 GGCGTGTCTGAAATTTTGAACGA 60.547 43.478 19.91 4.27 31.76 3.85
3752 5303 2.719046 GGCGTGTCTGAAATTTTGAACG 59.281 45.455 15.92 15.92 0.00 3.95
3753 5304 3.485743 GTGGCGTGTCTGAAATTTTGAAC 59.514 43.478 0.00 0.00 0.00 3.18
3754 5305 3.380004 AGTGGCGTGTCTGAAATTTTGAA 59.620 39.130 0.00 0.00 0.00 2.69
3755 5306 2.948979 AGTGGCGTGTCTGAAATTTTGA 59.051 40.909 0.00 0.00 0.00 2.69
3756 5307 3.003689 AGAGTGGCGTGTCTGAAATTTTG 59.996 43.478 0.00 0.00 0.00 2.44
3758 5309 2.851195 AGAGTGGCGTGTCTGAAATTT 58.149 42.857 0.00 0.00 0.00 1.82
3759 5310 2.550830 AGAGTGGCGTGTCTGAAATT 57.449 45.000 0.00 0.00 0.00 1.82
3760 5311 3.449018 AGATAGAGTGGCGTGTCTGAAAT 59.551 43.478 0.00 0.00 0.00 2.17
3761 5312 2.826128 AGATAGAGTGGCGTGTCTGAAA 59.174 45.455 0.00 0.00 0.00 2.69
3762 5313 2.447443 AGATAGAGTGGCGTGTCTGAA 58.553 47.619 0.00 0.00 0.00 3.02
3763 5314 2.130272 AGATAGAGTGGCGTGTCTGA 57.870 50.000 0.00 0.00 0.00 3.27
3764 5315 2.534298 CAAGATAGAGTGGCGTGTCTG 58.466 52.381 0.00 0.00 0.00 3.51
3766 5317 1.204941 ACCAAGATAGAGTGGCGTGTC 59.795 52.381 0.00 0.00 38.58 3.67
3770 5324 0.824109 TGGACCAAGATAGAGTGGCG 59.176 55.000 0.00 0.00 38.58 5.69
3785 5339 1.398390 GTTCGGCATCATGAGTTGGAC 59.602 52.381 0.09 0.00 0.00 4.02
3786 5340 1.003003 TGTTCGGCATCATGAGTTGGA 59.997 47.619 0.09 0.00 0.00 3.53
3837 5424 7.389330 CACTTTTTGGGTTGGATTAAATTACCC 59.611 37.037 3.71 3.71 46.98 3.69
3855 5442 1.000938 GCTCTCTGCCACCACTTTTTG 60.001 52.381 0.00 0.00 35.15 2.44
3867 5463 4.087892 TTCCCGGCTGCTCTCTGC 62.088 66.667 0.00 0.00 43.25 4.26
3888 5484 0.608035 TCTTGGGGAAATGCACGGTC 60.608 55.000 0.00 0.00 0.00 4.79
3890 5486 1.595093 GGTCTTGGGGAAATGCACGG 61.595 60.000 0.00 0.00 0.00 4.94
3891 5487 1.595093 GGGTCTTGGGGAAATGCACG 61.595 60.000 0.00 0.00 0.00 5.34
3893 5489 0.541764 GTGGGTCTTGGGGAAATGCA 60.542 55.000 0.00 0.00 0.00 3.96
3894 5490 1.595093 CGTGGGTCTTGGGGAAATGC 61.595 60.000 0.00 0.00 0.00 3.56
3901 5512 2.672996 CCTTGCGTGGGTCTTGGG 60.673 66.667 0.00 0.00 0.00 4.12
3950 5561 4.700365 GCAACGCGACAAAGGGGC 62.700 66.667 15.93 0.00 0.00 5.80
4041 5659 2.434359 GCTGGTGCTGGTACGGTC 60.434 66.667 0.00 0.00 36.83 4.79
4042 5660 3.238497 TGCTGGTGCTGGTACGGT 61.238 61.111 0.00 0.00 40.48 4.83
4043 5661 2.742372 GTGCTGGTGCTGGTACGG 60.742 66.667 0.00 0.00 40.48 4.02
4044 5662 2.742372 GGTGCTGGTGCTGGTACG 60.742 66.667 0.00 0.00 40.48 3.67
4045 5663 1.672356 CTGGTGCTGGTGCTGGTAC 60.672 63.158 0.00 0.00 40.48 3.34
4046 5664 2.749682 CTGGTGCTGGTGCTGGTA 59.250 61.111 0.00 0.00 40.48 3.25
4047 5665 4.962836 GCTGGTGCTGGTGCTGGT 62.963 66.667 0.00 0.00 40.48 4.00
4048 5666 4.960866 TGCTGGTGCTGGTGCTGG 62.961 66.667 0.00 0.00 40.48 4.85
4049 5667 3.362797 CTGCTGGTGCTGGTGCTG 61.363 66.667 0.00 0.00 40.48 4.41
4207 5840 3.430497 CGAGGAGGAGGGGGAGGA 61.430 72.222 0.00 0.00 0.00 3.71
4235 5868 3.727726 ACTTGTTTAAAAGGCCACATGC 58.272 40.909 5.01 0.00 40.16 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.