Multiple sequence alignment - TraesCS6A01G268600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G268600 chr6A 100.000 8803 0 0 1 8803 495260489 495251687 0.000000e+00 16257.0
1 TraesCS6A01G268600 chr6A 94.452 703 29 5 8101 8802 495141410 495140717 0.000000e+00 1074.0
2 TraesCS6A01G268600 chr6D 94.781 7645 295 44 376 7969 348648531 348656122 0.000000e+00 11812.0
3 TraesCS6A01G268600 chr6D 91.429 280 9 6 8529 8802 348656119 348656389 3.880000e-98 370.0
4 TraesCS6A01G268600 chr6D 94.737 38 2 0 70 107 14134226 14134263 9.540000e-05 60.2
5 TraesCS6A01G268600 chr1A 88.670 5993 511 97 2033 7932 454517473 454523390 0.000000e+00 7151.0
6 TraesCS6A01G268600 chr1A 90.694 720 61 3 995 1711 454516162 454516878 0.000000e+00 953.0
7 TraesCS6A01G268600 chr1A 87.611 226 25 1 3182 3404 44060436 44060661 8.770000e-65 259.0
8 TraesCS6A01G268600 chr1A 92.157 51 2 2 7000 7050 560341572 560341620 4.410000e-08 71.3
9 TraesCS6A01G268600 chr6B 92.946 4749 236 41 4106 8802 531011733 531007032 0.000000e+00 6822.0
10 TraesCS6A01G268600 chr6B 91.117 2015 162 13 2033 4042 531014116 531012114 0.000000e+00 2713.0
11 TraesCS6A01G268600 chr6B 87.692 1690 139 29 381 2006 531015864 531014180 0.000000e+00 1905.0
12 TraesCS6A01G268600 chr1D 90.803 4132 295 47 2041 6130 355073524 355077612 0.000000e+00 5446.0
13 TraesCS6A01G268600 chr1D 85.550 1917 203 35 6060 7932 355077614 355079500 0.000000e+00 1938.0
14 TraesCS6A01G268600 chr1D 88.818 787 63 4 995 1757 355072459 355073244 0.000000e+00 942.0
15 TraesCS6A01G268600 chr1D 76.044 455 86 17 3568 4008 45407600 45407155 1.920000e-51 215.0
16 TraesCS6A01G268600 chr1D 79.091 220 33 10 7725 7932 355085888 355086106 1.190000e-28 139.0
17 TraesCS6A01G268600 chr1B 87.721 4178 370 76 3795 7894 476874906 476879018 0.000000e+00 4741.0
18 TraesCS6A01G268600 chr1B 91.356 1770 134 14 2033 3796 476872988 476874744 0.000000e+00 2403.0
19 TraesCS6A01G268600 chr1B 88.235 816 57 8 973 1760 476871844 476872648 0.000000e+00 939.0
20 TraesCS6A01G268600 chr1B 78.715 249 41 7 7695 7932 476911703 476911950 1.180000e-33 156.0
21 TraesCS6A01G268600 chr5B 85.831 981 126 11 2120 3094 70360221 70361194 0.000000e+00 1029.0
22 TraesCS6A01G268600 chr5B 75.746 2177 366 89 4468 6554 70543051 70545155 0.000000e+00 946.0
23 TraesCS6A01G268600 chr5B 84.151 978 130 16 2129 3093 70439956 70440921 0.000000e+00 924.0
24 TraesCS6A01G268600 chr5B 85.227 616 87 2 963 1574 70496905 70497520 1.610000e-176 630.0
25 TraesCS6A01G268600 chr5B 83.459 665 79 21 4891 5552 70389347 70389983 2.740000e-164 590.0
26 TraesCS6A01G268600 chr5B 80.533 750 95 28 4741 5459 70561590 70562319 6.050000e-146 529.0
27 TraesCS6A01G268600 chr5B 81.818 638 100 13 937 1574 70355875 70356496 1.010000e-143 521.0
28 TraesCS6A01G268600 chr5B 73.992 1042 163 55 6370 7361 70554317 70555300 3.070000e-84 324.0
29 TraesCS6A01G268600 chr5B 91.121 214 18 1 1 213 303923642 303923855 1.120000e-73 289.0
30 TraesCS6A01G268600 chr5B 78.066 424 73 14 5650 6055 70391804 70392225 5.280000e-62 250.0
31 TraesCS6A01G268600 chr5B 82.661 248 41 2 7490 7736 70545484 70545730 1.490000e-52 219.0
32 TraesCS6A01G268600 chr5B 72.071 845 151 47 6367 7195 70625775 70626550 3.270000e-39 174.0
33 TraesCS6A01G268600 chr5B 77.160 324 37 20 6980 7286 70393087 70393390 4.260000e-33 154.0
34 TraesCS6A01G268600 chr5D 83.789 987 135 16 2120 3093 60217157 60216183 0.000000e+00 913.0
35 TraesCS6A01G268600 chr5D 79.560 1091 155 42 4498 5545 60087207 60086142 0.000000e+00 717.0
36 TraesCS6A01G268600 chr5D 85.150 633 80 9 943 1574 60183213 60182594 3.470000e-178 636.0
37 TraesCS6A01G268600 chr5D 84.559 544 83 1 1075 1618 60218302 60217760 1.010000e-148 538.0
38 TraesCS6A01G268600 chr5D 84.758 433 55 8 5122 5551 60077578 60077154 2.940000e-114 424.0
39 TraesCS6A01G268600 chr5D 78.274 672 117 21 5640 6292 60077155 60076494 1.060000e-108 405.0
40 TraesCS6A01G268600 chr5D 77.232 672 133 17 5637 6292 60086128 60085461 8.340000e-100 375.0
41 TraesCS6A01G268600 chr5D 79.497 517 69 20 4657 5155 60013287 60012790 5.090000e-87 333.0
42 TraesCS6A01G268600 chr5D 80.605 397 65 11 5668 6055 60253269 60252876 6.680000e-76 296.0
43 TraesCS6A01G268600 chr3A 81.190 941 139 26 6828 7753 266432344 266431427 0.000000e+00 723.0
44 TraesCS6A01G268600 chr3A 85.366 369 34 9 3172 3536 77717792 77717440 1.810000e-96 364.0
45 TraesCS6A01G268600 chr5A 82.237 608 97 9 2493 3095 48772048 48771447 1.690000e-141 514.0
46 TraesCS6A01G268600 chr4D 90.957 376 31 3 3 375 506394645 506395020 3.670000e-138 503.0
47 TraesCS6A01G268600 chr3D 84.250 527 72 8 7222 7744 193944746 193945265 3.670000e-138 503.0
48 TraesCS6A01G268600 chr3D 82.895 532 76 12 7226 7753 193942404 193942924 1.730000e-126 464.0
49 TraesCS6A01G268600 chr3D 79.218 409 59 13 6828 7226 193601940 193602332 2.440000e-65 261.0
50 TraesCS6A01G268600 chrUn 73.976 1099 233 42 2649 3728 162359339 162358275 6.400000e-106 396.0
51 TraesCS6A01G268600 chrUn 80.769 364 57 10 2086 2441 162360032 162359674 1.130000e-68 272.0
52 TraesCS6A01G268600 chr2D 86.612 366 32 10 3172 3536 37136962 37137311 1.070000e-103 388.0
53 TraesCS6A01G268600 chr7A 89.701 301 31 0 2144 2444 111944073 111943773 1.390000e-102 385.0
54 TraesCS6A01G268600 chr7A 82.550 298 40 6 7355 7647 111916255 111915965 1.470000e-62 252.0
55 TraesCS6A01G268600 chr7A 92.105 114 9 0 3608 3721 111943242 111943129 2.540000e-35 161.0
56 TraesCS6A01G268600 chr4B 84.153 366 41 8 3172 3536 537204323 537204672 1.090000e-88 339.0
57 TraesCS6A01G268600 chr2B 85.759 323 29 8 3215 3536 31066757 31067063 8.520000e-85 326.0
58 TraesCS6A01G268600 chr4A 88.839 224 22 3 3182 3402 13253054 13253277 1.130000e-68 272.0
59 TraesCS6A01G268600 chr2A 87.611 226 25 1 3182 3404 628693473 628693248 8.770000e-65 259.0
60 TraesCS6A01G268600 chr7D 79.345 397 56 11 7256 7647 106342372 106341997 1.130000e-63 255.0
61 TraesCS6A01G268600 chr7D 91.935 124 8 2 3608 3730 106353216 106353094 1.170000e-38 172.0
62 TraesCS6A01G268600 chr7D 87.324 142 18 0 4424 4565 106352837 106352696 7.070000e-36 163.0
63 TraesCS6A01G268600 chr7D 87.903 124 9 1 4672 4795 106352667 106352550 3.310000e-29 141.0
64 TraesCS6A01G268600 chr7B 94.737 38 2 0 70 107 457243452 457243489 9.540000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G268600 chr6A 495251687 495260489 8802 True 16257.000000 16257 100.000000 1 8803 1 chr6A.!!$R2 8802
1 TraesCS6A01G268600 chr6A 495140717 495141410 693 True 1074.000000 1074 94.452000 8101 8802 1 chr6A.!!$R1 701
2 TraesCS6A01G268600 chr6D 348648531 348656389 7858 False 6091.000000 11812 93.105000 376 8802 2 chr6D.!!$F2 8426
3 TraesCS6A01G268600 chr1A 454516162 454523390 7228 False 4052.000000 7151 89.682000 995 7932 2 chr1A.!!$F3 6937
4 TraesCS6A01G268600 chr6B 531007032 531015864 8832 True 3813.333333 6822 90.585000 381 8802 3 chr6B.!!$R1 8421
5 TraesCS6A01G268600 chr1D 355072459 355079500 7041 False 2775.333333 5446 88.390333 995 7932 3 chr1D.!!$F2 6937
6 TraesCS6A01G268600 chr1B 476871844 476879018 7174 False 2694.333333 4741 89.104000 973 7894 3 chr1B.!!$F2 6921
7 TraesCS6A01G268600 chr5B 70439956 70440921 965 False 924.000000 924 84.151000 2129 3093 1 chr5B.!!$F1 964
8 TraesCS6A01G268600 chr5B 70355875 70361194 5319 False 775.000000 1029 83.824500 937 3094 2 chr5B.!!$F7 2157
9 TraesCS6A01G268600 chr5B 70496905 70497520 615 False 630.000000 630 85.227000 963 1574 1 chr5B.!!$F2 611
10 TraesCS6A01G268600 chr5B 70543051 70545730 2679 False 582.500000 946 79.203500 4468 7736 2 chr5B.!!$F9 3268
11 TraesCS6A01G268600 chr5B 70561590 70562319 729 False 529.000000 529 80.533000 4741 5459 1 chr5B.!!$F4 718
12 TraesCS6A01G268600 chr5B 70389347 70393390 4043 False 331.333333 590 79.561667 4891 7286 3 chr5B.!!$F8 2395
13 TraesCS6A01G268600 chr5B 70554317 70555300 983 False 324.000000 324 73.992000 6370 7361 1 chr5B.!!$F3 991
14 TraesCS6A01G268600 chr5D 60216183 60218302 2119 True 725.500000 913 84.174000 1075 3093 2 chr5D.!!$R6 2018
15 TraesCS6A01G268600 chr5D 60182594 60183213 619 True 636.000000 636 85.150000 943 1574 1 chr5D.!!$R2 631
16 TraesCS6A01G268600 chr5D 60085461 60087207 1746 True 546.000000 717 78.396000 4498 6292 2 chr5D.!!$R5 1794
17 TraesCS6A01G268600 chr5D 60076494 60077578 1084 True 414.500000 424 81.516000 5122 6292 2 chr5D.!!$R4 1170
18 TraesCS6A01G268600 chr3A 266431427 266432344 917 True 723.000000 723 81.190000 6828 7753 1 chr3A.!!$R2 925
19 TraesCS6A01G268600 chr5A 48771447 48772048 601 True 514.000000 514 82.237000 2493 3095 1 chr5A.!!$R1 602
20 TraesCS6A01G268600 chr3D 193942404 193945265 2861 False 483.500000 503 83.572500 7222 7753 2 chr3D.!!$F2 531
21 TraesCS6A01G268600 chrUn 162358275 162360032 1757 True 334.000000 396 77.372500 2086 3728 2 chrUn.!!$R1 1642
22 TraesCS6A01G268600 chr7A 111943129 111944073 944 True 273.000000 385 90.903000 2144 3721 2 chr7A.!!$R2 1577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.038159 GACCTCCTCAACCTCACGTG 60.038 60.000 9.94 9.94 0.00 4.49 F
284 285 0.102481 CCGATCCGGTCACGAAGATT 59.898 55.000 16.06 0.00 42.73 2.40 F
305 306 0.106719 ATTTGGTTCATCGGCGGGAT 60.107 50.000 7.21 0.00 35.09 3.85 F
326 327 0.108281 GCTGGTAGACCGAGAAACCC 60.108 60.000 0.00 0.00 39.43 4.11 F
358 359 0.178533 AAACGTCGGAGTGAACCCAA 59.821 50.000 0.00 0.00 0.00 4.12 F
365 366 0.179040 GGAGTGAACCCAAACCGTCA 60.179 55.000 0.00 0.00 0.00 4.35 F
367 368 0.464916 AGTGAACCCAAACCGTCACC 60.465 55.000 0.00 0.00 0.00 4.02 F
674 683 0.759346 ACGCACCCTCTTCTCACTTT 59.241 50.000 0.00 0.00 0.00 2.66 F
2487 6308 1.273606 TCGTCTCCAGGAAAAGCTCTG 59.726 52.381 0.00 0.00 0.00 3.35 F
4057 8224 0.396974 GCCAAATGATACTGCCCCCA 60.397 55.000 0.00 0.00 0.00 4.96 F
4065 8232 0.909623 ATACTGCCCCCACTACACAC 59.090 55.000 0.00 0.00 0.00 3.82 F
4098 8265 1.754803 TCAGTGGACGGCAGTATAAGG 59.245 52.381 0.00 0.00 0.00 2.69 F
4238 8724 1.974265 TGTCTGGGCAAATGACGAAA 58.026 45.000 0.00 0.00 33.81 3.46 F
5753 12165 2.363788 TAAGGTCGCAGTGTGATCAC 57.636 50.000 19.27 19.27 44.15 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2629 0.253044 TGCTTGGTGATCTGGGTAGC 59.747 55.000 0.00 0.00 0.00 3.58 R
2090 2632 0.700564 ATGTGCTTGGTGATCTGGGT 59.299 50.000 0.00 0.00 0.00 4.51 R
2266 6085 1.855213 GCGCCACAACATCAGCTTCA 61.855 55.000 0.00 0.00 0.00 3.02 R
2332 6151 2.887152 GCCATTCAACTCAACCTTCACT 59.113 45.455 0.00 0.00 0.00 3.41 R
2483 6304 8.883954 TGAATATCAGAAATAGTGCTTCAGAG 57.116 34.615 0.00 0.00 0.00 3.35 R
2484 6305 9.671279 TTTGAATATCAGAAATAGTGCTTCAGA 57.329 29.630 0.00 0.00 0.00 3.27 R
2645 6621 6.599244 TCCAAGCAAAATGTCTGAGGTATAAG 59.401 38.462 0.00 0.00 0.00 1.73 R
2916 6892 4.224594 AGGAATTCATCAGAGAGCTCACAA 59.775 41.667 17.77 2.46 0.00 3.33 R
4651 9182 0.182537 AAACTGTGCCACCTGTAGCA 59.817 50.000 0.00 0.00 36.44 3.49 R
5753 12165 0.248215 GCTCAAATTCCACATCCGCG 60.248 55.000 0.00 0.00 0.00 6.46 R
6249 12873 1.002868 GCCCTTCTGCTTCAGCTCA 60.003 57.895 0.00 0.00 42.66 4.26 R
6457 13097 3.022406 GCAGGATTTCAAGATCAGCCTT 58.978 45.455 0.00 0.00 0.00 4.35 R
6495 13135 1.622811 AGGTCTCTCAGCCAAAGAGTG 59.377 52.381 7.30 0.00 40.92 3.51 R
7941 14738 0.861837 CGGATTAGCTCACGGAATGC 59.138 55.000 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.319198 TCCGACAGGACCTTGCCC 61.319 66.667 0.00 0.00 42.75 5.36
25 26 3.636231 CCGACAGGACCTTGCCCA 61.636 66.667 0.00 0.00 41.02 5.36
26 27 2.358737 CGACAGGACCTTGCCCAC 60.359 66.667 0.00 0.00 0.00 4.61
27 28 2.034221 GACAGGACCTTGCCCACC 59.966 66.667 0.00 0.00 0.00 4.61
28 29 3.901797 GACAGGACCTTGCCCACCG 62.902 68.421 0.00 0.00 0.00 4.94
44 45 4.457496 CGCGTGCACCTCCATCCT 62.457 66.667 12.15 0.00 0.00 3.24
45 46 2.512515 GCGTGCACCTCCATCCTC 60.513 66.667 12.15 0.00 0.00 3.71
46 47 3.023949 GCGTGCACCTCCATCCTCT 62.024 63.158 12.15 0.00 0.00 3.69
47 48 1.599047 CGTGCACCTCCATCCTCTT 59.401 57.895 12.15 0.00 0.00 2.85
49 50 1.471676 CGTGCACCTCCATCCTCTTAC 60.472 57.143 12.15 0.00 0.00 2.34
50 51 1.134371 GTGCACCTCCATCCTCTTACC 60.134 57.143 5.22 0.00 0.00 2.85
52 53 1.972207 GCACCTCCATCCTCTTACCCT 60.972 57.143 0.00 0.00 0.00 4.34
53 54 2.482494 CACCTCCATCCTCTTACCCTT 58.518 52.381 0.00 0.00 0.00 3.95
54 55 2.436173 CACCTCCATCCTCTTACCCTTC 59.564 54.545 0.00 0.00 0.00 3.46
55 56 2.319438 ACCTCCATCCTCTTACCCTTCT 59.681 50.000 0.00 0.00 0.00 2.85
56 57 2.969262 CCTCCATCCTCTTACCCTTCTC 59.031 54.545 0.00 0.00 0.00 2.87
57 58 2.969262 CTCCATCCTCTTACCCTTCTCC 59.031 54.545 0.00 0.00 0.00 3.71
58 59 2.050918 CCATCCTCTTACCCTTCTCCC 58.949 57.143 0.00 0.00 0.00 4.30
60 61 0.686769 TCCTCTTACCCTTCTCCCGC 60.687 60.000 0.00 0.00 0.00 6.13
63 64 0.686769 TCTTACCCTTCTCCCGCTCC 60.687 60.000 0.00 0.00 0.00 4.70
64 65 2.017559 CTTACCCTTCTCCCGCTCCG 62.018 65.000 0.00 0.00 0.00 4.63
74 75 2.919856 CCGCTCCGGGATCCAGAT 60.920 66.667 15.23 0.00 44.15 2.90
76 77 1.905843 CGCTCCGGGATCCAGATCT 60.906 63.158 15.23 0.00 37.92 2.75
78 79 0.320050 GCTCCGGGATCCAGATCTTC 59.680 60.000 15.23 0.00 37.92 2.87
79 80 1.709578 CTCCGGGATCCAGATCTTCA 58.290 55.000 15.23 0.00 37.92 3.02
81 82 0.394565 CCGGGATCCAGATCTTCACC 59.605 60.000 15.23 0.00 37.92 4.02
82 83 0.394565 CGGGATCCAGATCTTCACCC 59.605 60.000 15.23 11.74 37.92 4.61
83 84 0.767998 GGGATCCAGATCTTCACCCC 59.232 60.000 15.23 8.04 37.92 4.95
84 85 1.697291 GGGATCCAGATCTTCACCCCT 60.697 57.143 15.23 0.00 37.92 4.79
86 87 2.105649 GGATCCAGATCTTCACCCCTTC 59.894 54.545 6.95 0.00 37.92 3.46
87 88 1.584724 TCCAGATCTTCACCCCTTCC 58.415 55.000 0.00 0.00 0.00 3.46
88 89 1.081174 TCCAGATCTTCACCCCTTCCT 59.919 52.381 0.00 0.00 0.00 3.36
89 90 1.488393 CCAGATCTTCACCCCTTCCTC 59.512 57.143 0.00 0.00 0.00 3.71
91 92 2.433970 CAGATCTTCACCCCTTCCTCTC 59.566 54.545 0.00 0.00 0.00 3.20
92 93 1.765904 GATCTTCACCCCTTCCTCTCC 59.234 57.143 0.00 0.00 0.00 3.71
93 94 0.793617 TCTTCACCCCTTCCTCTCCT 59.206 55.000 0.00 0.00 0.00 3.69
94 95 1.199615 CTTCACCCCTTCCTCTCCTC 58.800 60.000 0.00 0.00 0.00 3.71
95 96 0.252742 TTCACCCCTTCCTCTCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
97 98 0.689412 CACCCCTTCCTCTCCTCCTC 60.689 65.000 0.00 0.00 0.00 3.71
99 100 1.456705 CCCTTCCTCTCCTCCTCCG 60.457 68.421 0.00 0.00 0.00 4.63
102 103 0.548989 CTTCCTCTCCTCCTCCGAGA 59.451 60.000 0.00 0.00 38.52 4.04
104 105 4.157607 CTCTCCTCCTCCGAGAGC 57.842 66.667 0.00 0.00 45.02 4.09
105 106 1.531748 CTCTCCTCCTCCGAGAGCT 59.468 63.158 0.00 0.00 45.02 4.09
106 107 0.106719 CTCTCCTCCTCCGAGAGCTT 60.107 60.000 0.00 0.00 45.02 3.74
107 108 0.395036 TCTCCTCCTCCGAGAGCTTG 60.395 60.000 0.00 0.00 38.52 4.01
108 109 0.395036 CTCCTCCTCCGAGAGCTTGA 60.395 60.000 0.00 0.00 38.52 3.02
109 110 0.395036 TCCTCCTCCGAGAGCTTGAG 60.395 60.000 0.00 0.00 38.52 3.02
111 112 0.738389 CTCCTCCGAGAGCTTGAGTC 59.262 60.000 0.00 0.00 38.52 3.36
112 113 0.681564 TCCTCCGAGAGCTTGAGTCC 60.682 60.000 0.00 0.00 0.00 3.85
114 115 0.682855 CTCCGAGAGCTTGAGTCCCT 60.683 60.000 0.00 0.00 0.00 4.20
115 116 0.251832 TCCGAGAGCTTGAGTCCCTT 60.252 55.000 0.00 0.00 0.00 3.95
116 117 0.174617 CCGAGAGCTTGAGTCCCTTC 59.825 60.000 0.00 0.00 0.00 3.46
117 118 0.891373 CGAGAGCTTGAGTCCCTTCA 59.109 55.000 0.00 0.00 0.00 3.02
118 119 1.480137 CGAGAGCTTGAGTCCCTTCAT 59.520 52.381 0.00 0.00 0.00 2.57
120 121 2.499289 GAGAGCTTGAGTCCCTTCATCA 59.501 50.000 0.00 0.00 0.00 3.07
121 122 3.113824 AGAGCTTGAGTCCCTTCATCAT 58.886 45.455 0.00 0.00 0.00 2.45
123 124 2.172293 AGCTTGAGTCCCTTCATCATCC 59.828 50.000 0.00 0.00 0.00 3.51
124 125 2.747799 GCTTGAGTCCCTTCATCATCCC 60.748 54.545 0.00 0.00 0.00 3.85
125 126 1.511613 TGAGTCCCTTCATCATCCCC 58.488 55.000 0.00 0.00 0.00 4.81
126 127 0.394565 GAGTCCCTTCATCATCCCCG 59.605 60.000 0.00 0.00 0.00 5.73
127 128 1.227973 GTCCCTTCATCATCCCCGC 60.228 63.158 0.00 0.00 0.00 6.13
129 130 1.227102 CCCTTCATCATCCCCGCAA 59.773 57.895 0.00 0.00 0.00 4.85
130 131 1.103398 CCCTTCATCATCCCCGCAAC 61.103 60.000 0.00 0.00 0.00 4.17
131 132 0.107017 CCTTCATCATCCCCGCAACT 60.107 55.000 0.00 0.00 0.00 3.16
132 133 1.303309 CTTCATCATCCCCGCAACTC 58.697 55.000 0.00 0.00 0.00 3.01
133 134 0.107214 TTCATCATCCCCGCAACTCC 60.107 55.000 0.00 0.00 0.00 3.85
134 135 0.982852 TCATCATCCCCGCAACTCCT 60.983 55.000 0.00 0.00 0.00 3.69
135 136 0.107017 CATCATCCCCGCAACTCCTT 60.107 55.000 0.00 0.00 0.00 3.36
136 137 0.181350 ATCATCCCCGCAACTCCTTC 59.819 55.000 0.00 0.00 0.00 3.46
137 138 1.452108 CATCCCCGCAACTCCTTCC 60.452 63.158 0.00 0.00 0.00 3.46
138 139 1.923395 ATCCCCGCAACTCCTTCCA 60.923 57.895 0.00 0.00 0.00 3.53
139 140 1.281925 ATCCCCGCAACTCCTTCCAT 61.282 55.000 0.00 0.00 0.00 3.41
142 143 1.299648 CCGCAACTCCTTCCATGGA 59.700 57.895 11.44 11.44 34.52 3.41
143 144 1.026718 CCGCAACTCCTTCCATGGAC 61.027 60.000 15.91 0.00 31.94 4.02
144 145 1.026718 CGCAACTCCTTCCATGGACC 61.027 60.000 15.91 0.00 31.94 4.46
148 149 0.419459 ACTCCTTCCATGGACCTCCT 59.581 55.000 15.91 0.00 36.82 3.69
149 150 1.127343 CTCCTTCCATGGACCTCCTC 58.873 60.000 15.91 0.00 36.82 3.71
150 151 0.417437 TCCTTCCATGGACCTCCTCA 59.583 55.000 15.91 0.00 36.82 3.86
151 152 1.203428 TCCTTCCATGGACCTCCTCAA 60.203 52.381 15.91 0.00 36.82 3.02
152 153 1.065126 CCTTCCATGGACCTCCTCAAC 60.065 57.143 15.91 0.00 36.82 3.18
153 154 0.991920 TTCCATGGACCTCCTCAACC 59.008 55.000 15.91 0.00 36.82 3.77
154 155 0.119155 TCCATGGACCTCCTCAACCT 59.881 55.000 11.44 0.00 36.82 3.50
155 156 0.543749 CCATGGACCTCCTCAACCTC 59.456 60.000 5.56 0.00 36.82 3.85
156 157 1.279496 CATGGACCTCCTCAACCTCA 58.721 55.000 0.00 0.00 36.82 3.86
157 158 1.065854 CATGGACCTCCTCAACCTCAC 60.066 57.143 0.00 0.00 36.82 3.51
158 159 1.185618 TGGACCTCCTCAACCTCACG 61.186 60.000 0.00 0.00 36.82 4.35
159 160 1.186267 GGACCTCCTCAACCTCACGT 61.186 60.000 0.00 0.00 0.00 4.49
160 161 0.038159 GACCTCCTCAACCTCACGTG 60.038 60.000 9.94 9.94 0.00 4.49
161 162 1.374758 CCTCCTCAACCTCACGTGC 60.375 63.158 11.67 0.00 0.00 5.34
162 163 1.374758 CTCCTCAACCTCACGTGCC 60.375 63.158 11.67 0.00 0.00 5.01
163 164 2.358737 CCTCAACCTCACGTGCCC 60.359 66.667 11.67 0.00 0.00 5.36
164 165 2.358737 CTCAACCTCACGTGCCCC 60.359 66.667 11.67 0.00 0.00 5.80
165 166 2.847234 TCAACCTCACGTGCCCCT 60.847 61.111 11.67 0.00 0.00 4.79
166 167 2.358737 CAACCTCACGTGCCCCTC 60.359 66.667 11.67 0.00 0.00 4.30
168 169 4.954118 ACCTCACGTGCCCCTCCA 62.954 66.667 11.67 0.00 0.00 3.86
169 170 4.394712 CCTCACGTGCCCCTCCAC 62.395 72.222 11.67 0.00 0.00 4.02
170 171 4.394712 CTCACGTGCCCCTCCACC 62.395 72.222 11.67 0.00 32.10 4.61
171 172 4.954118 TCACGTGCCCCTCCACCT 62.954 66.667 11.67 0.00 32.10 4.00
172 173 4.394712 CACGTGCCCCTCCACCTC 62.395 72.222 0.82 0.00 32.10 3.85
177 178 2.446802 GCCCCTCCACCTCCTAGG 60.447 72.222 0.82 0.82 42.49 3.02
179 180 3.120191 CCCTCCACCTCCTAGGGT 58.880 66.667 9.46 0.00 44.34 4.34
180 181 1.396594 CCCTCCACCTCCTAGGGTT 59.603 63.158 9.46 0.00 44.34 4.11
181 182 0.253207 CCCTCCACCTCCTAGGGTTT 60.253 60.000 9.46 0.00 44.34 3.27
182 183 1.670059 CCTCCACCTCCTAGGGTTTT 58.330 55.000 9.46 0.00 40.58 2.43
183 184 2.563596 CCCTCCACCTCCTAGGGTTTTA 60.564 54.545 9.46 0.00 44.34 1.52
185 186 3.136626 CCTCCACCTCCTAGGGTTTTATG 59.863 52.174 9.46 0.00 40.58 1.90
188 189 3.265995 CCACCTCCTAGGGTTTTATGTGT 59.734 47.826 9.46 0.00 40.58 3.72
189 190 4.472108 CCACCTCCTAGGGTTTTATGTGTA 59.528 45.833 9.46 0.00 40.58 2.90
190 191 5.425630 CACCTCCTAGGGTTTTATGTGTAC 58.574 45.833 9.46 0.00 40.58 2.90
191 192 5.189145 CACCTCCTAGGGTTTTATGTGTACT 59.811 44.000 9.46 0.00 40.58 2.73
192 193 5.424573 ACCTCCTAGGGTTTTATGTGTACTC 59.575 44.000 9.46 0.00 40.58 2.59
193 194 5.163332 CCTCCTAGGGTTTTATGTGTACTCC 60.163 48.000 9.46 0.00 0.00 3.85
194 195 4.403432 TCCTAGGGTTTTATGTGTACTCCG 59.597 45.833 9.46 0.00 0.00 4.63
197 198 1.662122 GGTTTTATGTGTACTCCGGCG 59.338 52.381 0.00 0.00 0.00 6.46
199 200 0.460635 TTTATGTGTACTCCGGCGGC 60.461 55.000 23.83 7.83 0.00 6.53
200 201 2.616786 TTATGTGTACTCCGGCGGCG 62.617 60.000 26.12 26.12 0.00 6.46
221 222 3.458163 CCTAGGGAGCACGCCGAA 61.458 66.667 0.00 0.00 0.00 4.30
223 224 2.361992 TAGGGAGCACGCCGAAGA 60.362 61.111 0.00 0.00 0.00 2.87
224 225 2.615262 CTAGGGAGCACGCCGAAGAC 62.615 65.000 0.00 0.00 0.00 3.01
225 226 4.070552 GGGAGCACGCCGAAGACT 62.071 66.667 0.00 0.00 0.00 3.24
226 227 2.811317 GGAGCACGCCGAAGACTG 60.811 66.667 0.00 0.00 0.00 3.51
227 228 3.482783 GAGCACGCCGAAGACTGC 61.483 66.667 0.00 0.00 0.00 4.40
233 234 4.719369 GCCGAAGACTGCGACGGT 62.719 66.667 3.77 0.00 45.91 4.83
234 235 2.805353 CCGAAGACTGCGACGGTG 60.805 66.667 3.77 0.00 40.42 4.94
237 238 4.681978 AAGACTGCGACGGTGGCC 62.682 66.667 12.66 0.00 0.00 5.36
249 250 4.176752 GTGGCCGGGATCAGGACC 62.177 72.222 2.18 10.20 35.39 4.46
254 255 2.499685 CGGGATCAGGACCGGAAC 59.500 66.667 9.46 0.00 46.08 3.62
255 256 2.355986 CGGGATCAGGACCGGAACA 61.356 63.158 9.46 0.00 46.08 3.18
256 257 1.522569 GGGATCAGGACCGGAACAG 59.477 63.158 9.46 0.00 0.00 3.16
257 258 0.976073 GGGATCAGGACCGGAACAGA 60.976 60.000 9.46 2.65 0.00 3.41
258 259 1.123928 GGATCAGGACCGGAACAGAT 58.876 55.000 9.46 8.17 0.00 2.90
259 260 1.069358 GGATCAGGACCGGAACAGATC 59.931 57.143 9.46 16.52 33.06 2.75
260 261 0.747255 ATCAGGACCGGAACAGATCG 59.253 55.000 9.46 0.00 0.00 3.69
261 262 1.519455 CAGGACCGGAACAGATCGC 60.519 63.158 9.46 0.00 0.00 4.58
262 263 1.982395 AGGACCGGAACAGATCGCA 60.982 57.895 9.46 0.00 0.00 5.10
263 264 1.810030 GGACCGGAACAGATCGCAC 60.810 63.158 9.46 0.00 0.00 5.34
265 266 1.352156 GACCGGAACAGATCGCACAC 61.352 60.000 9.46 0.00 0.00 3.82
266 267 2.100631 CCGGAACAGATCGCACACC 61.101 63.158 0.00 0.00 0.00 4.16
267 268 2.444624 CGGAACAGATCGCACACCG 61.445 63.158 0.00 0.00 38.61 4.94
282 283 3.193757 CCGATCCGGTCACGAAGA 58.806 61.111 16.06 0.00 42.73 2.87
283 284 1.734137 CCGATCCGGTCACGAAGAT 59.266 57.895 16.06 0.00 42.73 2.40
284 285 0.102481 CCGATCCGGTCACGAAGATT 59.898 55.000 16.06 0.00 42.73 2.40
285 286 1.200483 CGATCCGGTCACGAAGATTG 58.800 55.000 0.00 0.00 44.60 2.67
287 288 2.543861 CGATCCGGTCACGAAGATTGAT 60.544 50.000 0.00 0.00 44.60 2.57
288 289 3.458189 GATCCGGTCACGAAGATTGATT 58.542 45.455 0.00 0.00 44.60 2.57
289 290 3.328382 TCCGGTCACGAAGATTGATTT 57.672 42.857 0.00 0.00 44.60 2.17
290 291 3.000041 TCCGGTCACGAAGATTGATTTG 59.000 45.455 0.00 0.00 44.60 2.32
291 292 2.095853 CCGGTCACGAAGATTGATTTGG 59.904 50.000 0.00 0.00 44.60 3.28
292 293 2.742053 CGGTCACGAAGATTGATTTGGT 59.258 45.455 0.00 0.00 44.60 3.67
295 296 4.215399 GGTCACGAAGATTGATTTGGTTCA 59.785 41.667 0.00 0.00 0.00 3.18
296 297 5.106157 GGTCACGAAGATTGATTTGGTTCAT 60.106 40.000 0.00 0.00 0.00 2.57
297 298 6.024049 GTCACGAAGATTGATTTGGTTCATC 58.976 40.000 0.00 0.00 0.00 2.92
298 299 5.023920 CACGAAGATTGATTTGGTTCATCG 58.976 41.667 0.00 0.00 33.09 3.84
299 300 4.094887 ACGAAGATTGATTTGGTTCATCGG 59.905 41.667 0.00 0.00 31.82 4.18
300 301 4.354587 GAAGATTGATTTGGTTCATCGGC 58.645 43.478 0.00 0.00 0.00 5.54
301 302 2.355756 AGATTGATTTGGTTCATCGGCG 59.644 45.455 0.00 0.00 0.00 6.46
302 303 0.808125 TTGATTTGGTTCATCGGCGG 59.192 50.000 7.21 0.00 0.00 6.13
303 304 1.029408 TGATTTGGTTCATCGGCGGG 61.029 55.000 7.21 0.00 0.00 6.13
304 305 0.746563 GATTTGGTTCATCGGCGGGA 60.747 55.000 7.21 1.97 0.00 5.14
305 306 0.106719 ATTTGGTTCATCGGCGGGAT 60.107 50.000 7.21 0.00 35.09 3.85
306 307 0.746563 TTTGGTTCATCGGCGGGATC 60.747 55.000 7.21 4.59 31.28 3.36
307 308 2.661866 GGTTCATCGGCGGGATCG 60.662 66.667 7.21 0.00 39.81 3.69
317 318 2.728817 CGGGATCGCTGGTAGACC 59.271 66.667 8.28 0.00 0.00 3.85
319 320 1.826921 GGGATCGCTGGTAGACCGA 60.827 63.158 1.84 0.00 39.43 4.69
320 321 1.655329 GGATCGCTGGTAGACCGAG 59.345 63.158 0.00 0.00 39.43 4.63
321 322 0.818445 GGATCGCTGGTAGACCGAGA 60.818 60.000 0.00 0.00 39.43 4.04
322 323 1.022735 GATCGCTGGTAGACCGAGAA 58.977 55.000 0.00 0.00 39.43 2.87
324 325 0.524862 TCGCTGGTAGACCGAGAAAC 59.475 55.000 0.00 0.00 39.43 2.78
325 326 0.458025 CGCTGGTAGACCGAGAAACC 60.458 60.000 0.00 0.00 39.43 3.27
326 327 0.108281 GCTGGTAGACCGAGAAACCC 60.108 60.000 0.00 0.00 39.43 4.11
327 328 1.558233 CTGGTAGACCGAGAAACCCT 58.442 55.000 0.00 0.00 39.43 4.34
328 329 1.204941 CTGGTAGACCGAGAAACCCTG 59.795 57.143 0.00 0.00 39.43 4.45
329 330 0.535797 GGTAGACCGAGAAACCCTGG 59.464 60.000 0.00 0.00 0.00 4.45
330 331 1.264295 GTAGACCGAGAAACCCTGGT 58.736 55.000 0.00 0.00 37.44 4.00
333 334 2.434359 CCGAGAAACCCTGGTCGC 60.434 66.667 0.00 0.00 0.00 5.19
334 335 2.657237 CGAGAAACCCTGGTCGCT 59.343 61.111 0.00 0.00 0.00 4.93
338 339 1.376037 GAAACCCTGGTCGCTCCTG 60.376 63.158 0.00 0.00 37.07 3.86
339 340 1.827399 GAAACCCTGGTCGCTCCTGA 61.827 60.000 0.00 0.00 37.33 3.86
340 341 1.415672 AAACCCTGGTCGCTCCTGAA 61.416 55.000 0.00 0.00 37.33 3.02
341 342 1.415672 AACCCTGGTCGCTCCTGAAA 61.416 55.000 0.00 0.00 37.33 2.69
342 343 1.376037 CCCTGGTCGCTCCTGAAAC 60.376 63.158 0.00 0.00 37.33 2.78
343 344 1.738099 CCTGGTCGCTCCTGAAACG 60.738 63.158 5.29 0.00 37.33 3.60
346 347 2.087009 GGTCGCTCCTGAAACGTCG 61.087 63.158 0.00 0.00 0.00 5.12
347 348 2.087009 GTCGCTCCTGAAACGTCGG 61.087 63.158 0.00 0.00 0.00 4.79
349 350 1.801913 CGCTCCTGAAACGTCGGAG 60.802 63.158 15.01 15.01 42.57 4.63
350 351 1.289380 GCTCCTGAAACGTCGGAGT 59.711 57.895 18.41 0.00 42.12 3.85
352 353 0.596577 CTCCTGAAACGTCGGAGTGA 59.403 55.000 12.42 0.00 38.60 3.41
354 355 1.137513 CCTGAAACGTCGGAGTGAAC 58.862 55.000 0.00 0.00 30.94 3.18
355 356 1.137513 CTGAAACGTCGGAGTGAACC 58.862 55.000 0.00 0.00 30.94 3.62
357 358 0.249573 GAAACGTCGGAGTGAACCCA 60.250 55.000 0.00 0.00 0.00 4.51
358 359 0.178533 AAACGTCGGAGTGAACCCAA 59.821 50.000 0.00 0.00 0.00 4.12
359 360 0.178533 AACGTCGGAGTGAACCCAAA 59.821 50.000 0.00 0.00 0.00 3.28
360 361 0.531311 ACGTCGGAGTGAACCCAAAC 60.531 55.000 0.00 0.00 0.00 2.93
363 364 1.227734 CGGAGTGAACCCAAACCGT 60.228 57.895 0.00 0.00 37.96 4.83
364 365 1.226030 CGGAGTGAACCCAAACCGTC 61.226 60.000 0.00 0.00 37.96 4.79
365 366 0.179040 GGAGTGAACCCAAACCGTCA 60.179 55.000 0.00 0.00 0.00 4.35
366 367 0.942252 GAGTGAACCCAAACCGTCAC 59.058 55.000 0.00 0.00 0.00 3.67
367 368 0.464916 AGTGAACCCAAACCGTCACC 60.465 55.000 0.00 0.00 0.00 4.02
368 369 1.152922 TGAACCCAAACCGTCACCC 60.153 57.895 0.00 0.00 0.00 4.61
369 370 2.203238 AACCCAAACCGTCACCCG 60.203 61.111 0.00 0.00 0.00 5.28
372 373 2.358247 CCAAACCGTCACCCGAGG 60.358 66.667 0.00 0.00 39.56 4.63
392 393 1.680555 GGAACGCCACCATGGATGTTA 60.681 52.381 21.47 0.00 40.96 2.41
400 401 4.202357 GCCACCATGGATGTTATCTAGACA 60.202 45.833 21.47 0.00 40.96 3.41
405 406 6.013898 ACCATGGATGTTATCTAGACAGGATG 60.014 42.308 21.47 0.00 46.00 3.51
406 407 6.212187 CCATGGATGTTATCTAGACAGGATGA 59.788 42.308 5.56 0.00 39.69 2.92
452 453 1.164411 CTGCTAATGTCACCGCCAAA 58.836 50.000 0.00 0.00 0.00 3.28
460 461 1.273688 GTCACCGCCAAAAACAACAC 58.726 50.000 0.00 0.00 0.00 3.32
465 466 0.868177 CGCCAAAAACAACACCGTCC 60.868 55.000 0.00 0.00 0.00 4.79
485 486 5.394224 CGTCCAACATAGTAGACTCACCAAT 60.394 44.000 0.00 0.00 0.00 3.16
488 489 4.920640 ACATAGTAGACTCACCAATCCG 57.079 45.455 0.00 0.00 0.00 4.18
494 496 3.257561 CTCACCAATCCGCGAGCG 61.258 66.667 8.23 10.86 39.44 5.03
498 500 2.509336 CCAATCCGCGAGCGTCTT 60.509 61.111 8.23 6.36 37.81 3.01
504 506 3.248171 CGCGAGCGTCTTAGCACC 61.248 66.667 0.00 0.00 40.15 5.01
505 507 3.248171 GCGAGCGTCTTAGCACCG 61.248 66.667 0.00 0.00 40.15 4.94
525 527 0.867746 CCGTAATGGATGCCGACATG 59.132 55.000 0.00 0.00 42.00 3.21
567 569 4.973168 TCTAAGCGCCTGATATGGAAATT 58.027 39.130 2.29 0.00 0.00 1.82
620 622 1.038130 CGGACGGAGGATGAAGGAGT 61.038 60.000 0.00 0.00 0.00 3.85
625 627 1.330655 GGAGGATGAAGGAGTCCGCA 61.331 60.000 2.76 6.89 39.54 5.69
656 665 2.125269 CCGACGGTGGGATTGGAC 60.125 66.667 5.48 0.00 0.00 4.02
672 681 1.536943 GGACGCACCCTCTTCTCACT 61.537 60.000 0.00 0.00 0.00 3.41
674 683 0.759346 ACGCACCCTCTTCTCACTTT 59.241 50.000 0.00 0.00 0.00 2.66
931 984 1.846973 GTCCCCCAGATCCCCAATC 59.153 63.158 0.00 0.00 34.30 2.67
941 994 4.457181 CCCCAATCCCAACCCCCG 62.457 72.222 0.00 0.00 0.00 5.73
1230 1319 2.044551 GTCTCCTACGTCCCCGGT 60.045 66.667 0.00 0.00 38.78 5.28
1697 1910 1.682702 CCATGTGGCTGTAATGAGGCA 60.683 52.381 0.00 0.00 45.64 4.75
1725 1996 3.502211 GGTTGTGACCACATTAGAGTTGG 59.498 47.826 3.47 0.00 45.77 3.77
1804 2085 3.774766 TGGTAGTAGATTGGAGCATGTGT 59.225 43.478 0.00 0.00 0.00 3.72
1817 2098 5.163468 TGGAGCATGTGTGTTGTTTAATTGT 60.163 36.000 0.00 0.00 0.00 2.71
1928 2425 3.568007 TGTCCGAATCTTGTTTCCTTTGG 59.432 43.478 0.00 0.00 0.00 3.28
1931 2428 4.758165 TCCGAATCTTGTTTCCTTTGGTAC 59.242 41.667 0.00 0.00 0.00 3.34
1942 2442 7.787028 TGTTTCCTTTGGTACTTTTTAGCATT 58.213 30.769 0.00 0.00 0.00 3.56
2084 2626 3.528532 ACGTTATTTAGGCACAGCTACC 58.471 45.455 0.00 0.00 0.00 3.18
2085 2627 2.870411 CGTTATTTAGGCACAGCTACCC 59.130 50.000 0.00 0.00 0.00 3.69
2086 2628 3.680475 CGTTATTTAGGCACAGCTACCCA 60.680 47.826 0.00 0.00 0.00 4.51
2087 2629 2.717639 ATTTAGGCACAGCTACCCAG 57.282 50.000 0.00 0.00 0.00 4.45
2266 6085 2.550830 AGTTCAACATGACCGAGCTT 57.449 45.000 0.00 0.00 0.00 3.74
2482 6303 4.153117 CAGTTTGATCGTCTCCAGGAAAAG 59.847 45.833 0.00 0.00 0.00 2.27
2483 6304 2.386661 TGATCGTCTCCAGGAAAAGC 57.613 50.000 0.00 0.00 0.00 3.51
2484 6305 1.902508 TGATCGTCTCCAGGAAAAGCT 59.097 47.619 0.00 0.00 0.00 3.74
2485 6306 2.093973 TGATCGTCTCCAGGAAAAGCTC 60.094 50.000 0.00 0.00 0.00 4.09
2486 6307 1.633774 TCGTCTCCAGGAAAAGCTCT 58.366 50.000 0.00 0.00 0.00 4.09
2487 6308 1.273606 TCGTCTCCAGGAAAAGCTCTG 59.726 52.381 0.00 0.00 0.00 3.35
2645 6621 5.410355 TCCCCTGTAGTGTGTTGTTATAC 57.590 43.478 0.00 0.00 0.00 1.47
2916 6892 0.853530 AAGGAAGCTTTGGGTCCACT 59.146 50.000 0.00 0.00 0.00 4.00
2931 6907 2.233431 GTCCACTTGTGAGCTCTCTGAT 59.767 50.000 16.19 0.00 0.00 2.90
3040 7029 6.870965 CACTTCTTACAATTGCAGTCTCTAGT 59.129 38.462 5.05 0.00 0.00 2.57
3247 7237 4.862018 GCTCTAGCTGTGAGTAACAAGAAG 59.138 45.833 16.43 0.00 38.67 2.85
3284 7275 9.002600 CCATAGTATGCTATTTTGCAGTCATAA 57.997 33.333 4.47 0.00 46.71 1.90
3308 7299 6.910536 TGAAGAGTTCAGTCTGTTTTCTTC 57.089 37.500 22.15 22.15 39.45 2.87
3510 7504 3.262660 TGAGATATGGCCACCTCATGATC 59.737 47.826 22.99 11.36 31.45 2.92
3830 7995 9.746711 CATTCAGTTTTTCTATTTCTCTACGTG 57.253 33.333 0.00 0.00 0.00 4.49
3832 7997 9.537192 TTCAGTTTTTCTATTTCTCTACGTGAA 57.463 29.630 0.00 0.00 0.00 3.18
4018 8185 2.301583 TGTGCCTTTTGCCCCTTATTTC 59.698 45.455 0.00 0.00 40.16 2.17
4042 8209 6.701841 TCGTTTTTGCATTATAGTTTTGCCAA 59.298 30.769 0.00 0.00 35.51 4.52
4043 8210 7.224753 TCGTTTTTGCATTATAGTTTTGCCAAA 59.775 29.630 0.00 0.00 35.51 3.28
4044 8211 8.014517 CGTTTTTGCATTATAGTTTTGCCAAAT 58.985 29.630 0.00 0.00 32.99 2.32
4047 8214 8.789825 TTTGCATTATAGTTTTGCCAAATGAT 57.210 26.923 0.00 0.00 35.51 2.45
4048 8215 9.881649 TTTGCATTATAGTTTTGCCAAATGATA 57.118 25.926 0.00 0.00 35.51 2.15
4049 8216 8.870160 TGCATTATAGTTTTGCCAAATGATAC 57.130 30.769 0.00 0.00 35.51 2.24
4051 8218 8.971321 GCATTATAGTTTTGCCAAATGATACTG 58.029 33.333 3.14 2.64 0.00 2.74
4057 8224 0.396974 GCCAAATGATACTGCCCCCA 60.397 55.000 0.00 0.00 0.00 4.96
4059 8226 1.063717 CCAAATGATACTGCCCCCACT 60.064 52.381 0.00 0.00 0.00 4.00
4060 8227 2.174639 CCAAATGATACTGCCCCCACTA 59.825 50.000 0.00 0.00 0.00 2.74
4061 8228 3.214328 CAAATGATACTGCCCCCACTAC 58.786 50.000 0.00 0.00 0.00 2.73
4062 8229 2.190398 ATGATACTGCCCCCACTACA 57.810 50.000 0.00 0.00 0.00 2.74
4063 8230 1.200519 TGATACTGCCCCCACTACAC 58.799 55.000 0.00 0.00 0.00 2.90
4064 8231 1.200519 GATACTGCCCCCACTACACA 58.799 55.000 0.00 0.00 0.00 3.72
4065 8232 0.909623 ATACTGCCCCCACTACACAC 59.090 55.000 0.00 0.00 0.00 3.82
4081 8248 4.014847 ACACACACACACGATTTTTCAG 57.985 40.909 0.00 0.00 0.00 3.02
4086 8253 3.064820 ACACACACGATTTTTCAGTGGAC 59.935 43.478 0.00 0.00 39.95 4.02
4097 8264 3.520290 TTCAGTGGACGGCAGTATAAG 57.480 47.619 0.00 0.00 0.00 1.73
4098 8265 1.754803 TCAGTGGACGGCAGTATAAGG 59.245 52.381 0.00 0.00 0.00 2.69
4192 8678 2.014857 GAAGGCCGGGATTACTTTGAC 58.985 52.381 2.18 0.00 0.00 3.18
4200 8686 5.373222 CCGGGATTACTTTGACCATATTGA 58.627 41.667 0.00 0.00 0.00 2.57
4229 8715 3.243359 AGAAGGATTTTGTCTGGGCAA 57.757 42.857 0.00 0.00 0.00 4.52
4235 8721 2.791383 TTTTGTCTGGGCAAATGACG 57.209 45.000 1.15 0.00 38.05 4.35
4238 8724 1.974265 TGTCTGGGCAAATGACGAAA 58.026 45.000 0.00 0.00 33.81 3.46
4244 8730 5.007034 TCTGGGCAAATGACGAAAAAGATA 58.993 37.500 0.00 0.00 0.00 1.98
4245 8731 5.475220 TCTGGGCAAATGACGAAAAAGATAA 59.525 36.000 0.00 0.00 0.00 1.75
4297 8783 4.647564 AAAGATTGCTGAGAGGAAGGAA 57.352 40.909 0.00 0.00 0.00 3.36
4566 9052 5.749596 TTGCTCGTTCAAGAAGAATTTGA 57.250 34.783 0.00 0.00 38.76 2.69
4567 9053 5.095691 TGCTCGTTCAAGAAGAATTTGAC 57.904 39.130 0.00 0.00 38.76 3.18
4605 9121 6.316140 GGTTCACCAAAGAGCTTTTGAATTTT 59.684 34.615 17.53 0.00 34.11 1.82
4640 9170 8.997621 ATCATCATGCATATTCCTAAATTTGC 57.002 30.769 0.00 6.62 44.97 3.68
4642 9172 8.085909 TCATCATGCATATTCCTAAATTTGCTG 58.914 33.333 0.00 9.28 44.98 4.41
4857 9401 5.303078 AGCCAAGTACCATATGACTCTGTAG 59.697 44.000 3.65 0.00 0.00 2.74
4858 9402 5.069251 GCCAAGTACCATATGACTCTGTAGT 59.931 44.000 3.65 0.00 39.21 2.73
4859 9403 6.264744 GCCAAGTACCATATGACTCTGTAGTA 59.735 42.308 3.65 0.00 35.56 1.82
4860 9404 7.522399 GCCAAGTACCATATGACTCTGTAGTAG 60.522 44.444 3.65 0.00 35.56 2.57
4861 9405 7.040340 CCAAGTACCATATGACTCTGTAGTAGG 60.040 44.444 3.65 0.00 35.56 3.18
4862 9406 7.151694 AGTACCATATGACTCTGTAGTAGGT 57.848 40.000 3.65 0.00 35.56 3.08
4863 9407 7.584532 AGTACCATATGACTCTGTAGTAGGTT 58.415 38.462 3.65 0.00 35.56 3.50
4864 9408 6.963083 ACCATATGACTCTGTAGTAGGTTC 57.037 41.667 3.65 0.00 35.56 3.62
4865 9409 6.674573 ACCATATGACTCTGTAGTAGGTTCT 58.325 40.000 3.65 0.00 35.56 3.01
4867 9411 6.773200 CCATATGACTCTGTAGTAGGTTCTCA 59.227 42.308 3.65 0.00 35.56 3.27
4930 9514 6.015350 GCTAGTGCTAGGTATATCTTCACCAA 60.015 42.308 12.01 3.90 35.24 3.67
5062 9648 3.940209 TTGAACATTCATCCTGCCAAC 57.060 42.857 0.00 0.00 37.00 3.77
5082 9668 6.316890 GCCAACTATGATTGCAATTGGATTTT 59.683 34.615 24.63 8.72 37.59 1.82
5115 9703 9.415008 TGTACCTAAAATATGCCATGTTATGTT 57.585 29.630 0.00 0.00 0.00 2.71
5116 9704 9.893305 GTACCTAAAATATGCCATGTTATGTTC 57.107 33.333 0.00 0.00 0.00 3.18
5266 9857 4.367166 TGGGGAGACTATTGTACCAATGA 58.633 43.478 0.00 0.00 0.00 2.57
5753 12165 2.363788 TAAGGTCGCAGTGTGATCAC 57.636 50.000 19.27 19.27 44.15 3.06
6122 12746 9.878599 AATTATTATCTAACAAACGTATGCTGC 57.121 29.630 0.00 0.00 0.00 5.25
6206 12830 8.409358 AGGTTTATTCTTGCTGTTATTTCTGT 57.591 30.769 0.00 0.00 0.00 3.41
6234 12858 9.823647 GAAATCATAGTCAATAACAGGAAGAGA 57.176 33.333 0.00 0.00 0.00 3.10
6247 12871 2.955660 AGGAAGAGAGCAGACCTATTCG 59.044 50.000 0.00 0.00 33.88 3.34
6249 12873 3.572255 GGAAGAGAGCAGACCTATTCGAT 59.428 47.826 0.00 0.00 33.88 3.59
6274 12898 3.563390 GCTGAAGCAGAAGGGCTATAAAG 59.437 47.826 0.00 0.00 45.07 1.85
6495 13135 0.941542 TGCGTAACACAGAGCCAAAC 59.058 50.000 0.00 0.00 0.00 2.93
6632 13289 6.936335 TCACTGCTCTTCTCACATTGATTTTA 59.064 34.615 0.00 0.00 0.00 1.52
6721 13387 3.193691 TCTGAAAAGGCGAAGGACTCTAG 59.806 47.826 0.00 0.00 0.00 2.43
6801 13470 3.609103 ACACAAGTGATGCGTTTCTTC 57.391 42.857 7.28 0.00 0.00 2.87
6997 13698 6.875948 TGTGTGTCATAGTTTATTTGCTGT 57.124 33.333 0.00 0.00 0.00 4.40
7340 14074 7.201714 GCTGAAATTTCTGATGAAGACATAGCT 60.202 37.037 24.40 0.00 36.82 3.32
7351 14085 2.028190 CATAGCTGAGCCCGACCG 59.972 66.667 0.00 0.00 0.00 4.79
7636 14408 3.341823 CTTCAACAGGGACAGAAGATGG 58.658 50.000 0.00 0.00 39.78 3.51
7739 14516 0.522180 TCGCTTCCGAGAGTGAAGAC 59.478 55.000 4.30 0.00 39.32 3.01
7746 14526 2.010497 CCGAGAGTGAAGACGATGAGA 58.990 52.381 0.00 0.00 0.00 3.27
7839 14634 1.529226 CCCAAACATTGCGTGGAGTA 58.471 50.000 7.60 0.00 34.05 2.59
7840 14635 1.883275 CCCAAACATTGCGTGGAGTAA 59.117 47.619 7.60 0.00 34.05 2.24
7918 14715 1.417592 GTGCATCTCTTGTGCGTCG 59.582 57.895 0.00 0.00 45.37 5.12
7941 14738 5.220662 CGAATGTTATGTTAGGTTGCTGAGG 60.221 44.000 0.00 0.00 0.00 3.86
7959 14756 1.202698 AGGCATTCCGTGAGCTAATCC 60.203 52.381 0.00 0.00 37.47 3.01
7989 14786 5.189736 AGACTTGTGCCTATCACCATTTCTA 59.810 40.000 0.00 0.00 45.03 2.10
8008 14805 8.910666 CATTTCTAGTTCTAATATGCTGAGACG 58.089 37.037 0.00 0.00 0.00 4.18
8015 14812 6.641169 TCTAATATGCTGAGACGAGTGAAT 57.359 37.500 0.00 0.00 0.00 2.57
8027 14824 2.093973 ACGAGTGAATGTGGACATCCTC 60.094 50.000 0.00 0.00 35.10 3.71
8041 14839 5.817296 TGGACATCCTCGATTTTAATGTCAG 59.183 40.000 18.85 0.00 45.04 3.51
8042 14840 6.049149 GGACATCCTCGATTTTAATGTCAGA 58.951 40.000 18.85 0.00 45.04 3.27
8057 14855 4.952262 TGTCAGAAGTGATGCTTTATGC 57.048 40.909 0.00 0.00 37.59 3.14
8064 14862 5.242393 AGAAGTGATGCTTTATGCTTGTGTT 59.758 36.000 0.00 0.00 43.37 3.32
8087 14885 7.040755 TGTTGTGTCAGTAAATTGGGTTCTATG 60.041 37.037 0.00 0.00 0.00 2.23
8292 15099 4.848357 ACAGCAGCTATATCTTGGTTGTT 58.152 39.130 0.00 0.00 0.00 2.83
8318 15125 8.879427 ATTTAGTTCAGCTATTTAAACCAGGT 57.121 30.769 0.00 0.00 0.00 4.00
8322 15129 4.662278 TCAGCTATTTAAACCAGGTTGCT 58.338 39.130 5.30 6.17 0.00 3.91
8348 15155 7.391554 TGATGCAAGCAAATTCTTACTCTAGTT 59.608 33.333 0.00 0.00 0.00 2.24
8368 15175 3.988379 TGAGTGTTTGGTTGCAAGATC 57.012 42.857 0.00 0.00 0.00 2.75
8387 15194 3.520290 TCGGATGTTCAGGTGTCATAC 57.480 47.619 0.00 0.00 0.00 2.39
8484 15292 8.678199 CAAGTTAAGGTCAATTTATCCTCCTTC 58.322 37.037 0.00 0.00 36.76 3.46
8485 15293 7.928873 AGTTAAGGTCAATTTATCCTCCTTCA 58.071 34.615 0.00 0.00 36.76 3.02
8621 15437 1.384525 CCGTTCACTTGTCCACCAAA 58.615 50.000 0.00 0.00 31.20 3.28
8649 15470 4.404640 CAATGATGGCATCTAGGGTCAAT 58.595 43.478 26.49 7.83 32.35 2.57
8709 15530 6.376299 GGTTTTGGTAAGATAAACCTACAGGG 59.624 42.308 0.00 0.00 44.63 4.45
8766 15587 8.100791 AGATCACTAGTTGCATAAAGTTTACCA 58.899 33.333 0.00 0.00 0.00 3.25
8802 15623 6.808212 CGGTAAAATTCATCTGTCTGCAAATT 59.192 34.615 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.319198 GGGCAAGGTCCTGTCGGA 61.319 66.667 0.00 0.00 36.83 4.55
25 26 4.760047 GATGGAGGTGCACGCGGT 62.760 66.667 12.47 0.00 0.00 5.68
27 28 4.457496 AGGATGGAGGTGCACGCG 62.457 66.667 11.45 3.53 0.00 6.01
28 29 2.512515 GAGGATGGAGGTGCACGC 60.513 66.667 11.45 5.21 0.00 5.34
29 30 0.824109 TAAGAGGATGGAGGTGCACG 59.176 55.000 11.45 0.00 0.00 5.34
31 32 1.204146 GGTAAGAGGATGGAGGTGCA 58.796 55.000 0.00 0.00 0.00 4.57
32 33 0.470341 GGGTAAGAGGATGGAGGTGC 59.530 60.000 0.00 0.00 0.00 5.01
33 34 2.182516 AGGGTAAGAGGATGGAGGTG 57.817 55.000 0.00 0.00 0.00 4.00
34 35 2.319438 AGAAGGGTAAGAGGATGGAGGT 59.681 50.000 0.00 0.00 0.00 3.85
35 36 2.969262 GAGAAGGGTAAGAGGATGGAGG 59.031 54.545 0.00 0.00 0.00 4.30
36 37 2.969262 GGAGAAGGGTAAGAGGATGGAG 59.031 54.545 0.00 0.00 0.00 3.86
37 38 2.360423 GGGAGAAGGGTAAGAGGATGGA 60.360 54.545 0.00 0.00 0.00 3.41
38 39 2.050918 GGGAGAAGGGTAAGAGGATGG 58.949 57.143 0.00 0.00 0.00 3.51
39 40 1.689273 CGGGAGAAGGGTAAGAGGATG 59.311 57.143 0.00 0.00 0.00 3.51
41 42 0.686769 GCGGGAGAAGGGTAAGAGGA 60.687 60.000 0.00 0.00 0.00 3.71
43 44 0.747852 GAGCGGGAGAAGGGTAAGAG 59.252 60.000 0.00 0.00 0.00 2.85
44 45 0.686769 GGAGCGGGAGAAGGGTAAGA 60.687 60.000 0.00 0.00 0.00 2.10
45 46 1.823976 GGAGCGGGAGAAGGGTAAG 59.176 63.158 0.00 0.00 0.00 2.34
46 47 2.056223 CGGAGCGGGAGAAGGGTAA 61.056 63.158 0.00 0.00 0.00 2.85
47 48 2.441532 CGGAGCGGGAGAAGGGTA 60.442 66.667 0.00 0.00 0.00 3.69
57 58 2.919856 ATCTGGATCCCGGAGCGG 60.920 66.667 9.90 0.00 42.74 5.52
58 59 2.653702 GATCTGGATCCCGGAGCG 59.346 66.667 9.90 0.00 42.74 5.03
60 61 1.342819 GTGAAGATCTGGATCCCGGAG 59.657 57.143 9.90 0.00 42.74 4.63
63 64 0.394565 GGGTGAAGATCTGGATCCCG 59.605 60.000 9.90 2.27 38.58 5.14
64 65 0.767998 GGGGTGAAGATCTGGATCCC 59.232 60.000 9.90 6.79 38.58 3.85
65 66 1.813102 AGGGGTGAAGATCTGGATCC 58.187 55.000 4.20 4.20 38.58 3.36
66 67 2.105649 GGAAGGGGTGAAGATCTGGATC 59.894 54.545 0.00 2.63 38.09 3.36
68 69 1.081174 AGGAAGGGGTGAAGATCTGGA 59.919 52.381 0.00 0.00 0.00 3.86
69 70 1.488393 GAGGAAGGGGTGAAGATCTGG 59.512 57.143 0.00 0.00 0.00 3.86
70 71 2.433970 GAGAGGAAGGGGTGAAGATCTG 59.566 54.545 0.00 0.00 0.00 2.90
73 74 1.367848 AGGAGAGGAAGGGGTGAAGAT 59.632 52.381 0.00 0.00 0.00 2.40
74 75 0.793617 AGGAGAGGAAGGGGTGAAGA 59.206 55.000 0.00 0.00 0.00 2.87
76 77 0.252742 GGAGGAGAGGAAGGGGTGAA 60.253 60.000 0.00 0.00 0.00 3.18
78 79 0.689412 GAGGAGGAGAGGAAGGGGTG 60.689 65.000 0.00 0.00 0.00 4.61
79 80 1.707200 GAGGAGGAGAGGAAGGGGT 59.293 63.158 0.00 0.00 0.00 4.95
81 82 1.456705 CGGAGGAGGAGAGGAAGGG 60.457 68.421 0.00 0.00 0.00 3.95
82 83 0.467290 CTCGGAGGAGGAGAGGAAGG 60.467 65.000 0.00 0.00 36.61 3.46
83 84 0.548989 TCTCGGAGGAGGAGAGGAAG 59.451 60.000 4.96 0.00 40.85 3.46
84 85 2.711315 TCTCGGAGGAGGAGAGGAA 58.289 57.895 4.96 0.00 40.85 3.36
88 89 0.395036 CAAGCTCTCGGAGGAGGAGA 60.395 60.000 4.96 0.00 40.85 3.71
89 90 0.395036 TCAAGCTCTCGGAGGAGGAG 60.395 60.000 4.96 0.00 40.85 3.69
91 92 0.682855 ACTCAAGCTCTCGGAGGAGG 60.683 60.000 4.96 0.00 40.85 4.30
92 93 0.738389 GACTCAAGCTCTCGGAGGAG 59.262 60.000 4.96 5.98 41.89 3.69
93 94 0.681564 GGACTCAAGCTCTCGGAGGA 60.682 60.000 4.96 0.00 32.98 3.71
94 95 1.671901 GGGACTCAAGCTCTCGGAGG 61.672 65.000 4.96 0.00 32.98 4.30
95 96 0.682855 AGGGACTCAAGCTCTCGGAG 60.683 60.000 0.00 0.00 34.85 4.63
97 98 0.174617 GAAGGGACTCAAGCTCTCGG 59.825 60.000 0.00 0.00 38.49 4.63
99 100 2.499289 TGATGAAGGGACTCAAGCTCTC 59.501 50.000 0.00 0.00 38.49 3.20
102 103 2.172293 GGATGATGAAGGGACTCAAGCT 59.828 50.000 0.00 0.00 38.49 3.74
104 105 2.158696 GGGGATGATGAAGGGACTCAAG 60.159 54.545 0.00 0.00 38.49 3.02
105 106 1.846439 GGGGATGATGAAGGGACTCAA 59.154 52.381 0.00 0.00 38.49 3.02
106 107 1.511613 GGGGATGATGAAGGGACTCA 58.488 55.000 0.00 0.00 38.49 3.41
107 108 0.394565 CGGGGATGATGAAGGGACTC 59.605 60.000 0.00 0.00 38.49 3.36
109 110 1.227973 GCGGGGATGATGAAGGGAC 60.228 63.158 0.00 0.00 0.00 4.46
111 112 1.103398 GTTGCGGGGATGATGAAGGG 61.103 60.000 0.00 0.00 0.00 3.95
112 113 0.107017 AGTTGCGGGGATGATGAAGG 60.107 55.000 0.00 0.00 0.00 3.46
114 115 0.107214 GGAGTTGCGGGGATGATGAA 60.107 55.000 0.00 0.00 0.00 2.57
115 116 0.982852 AGGAGTTGCGGGGATGATGA 60.983 55.000 0.00 0.00 0.00 2.92
116 117 0.107017 AAGGAGTTGCGGGGATGATG 60.107 55.000 0.00 0.00 0.00 3.07
117 118 0.181350 GAAGGAGTTGCGGGGATGAT 59.819 55.000 0.00 0.00 0.00 2.45
118 119 1.602237 GAAGGAGTTGCGGGGATGA 59.398 57.895 0.00 0.00 0.00 2.92
120 121 1.281925 ATGGAAGGAGTTGCGGGGAT 61.282 55.000 0.00 0.00 0.00 3.85
121 122 1.923395 ATGGAAGGAGTTGCGGGGA 60.923 57.895 0.00 0.00 0.00 4.81
123 124 1.750399 CCATGGAAGGAGTTGCGGG 60.750 63.158 5.56 0.00 0.00 6.13
124 125 1.026718 GTCCATGGAAGGAGTTGCGG 61.027 60.000 18.20 0.00 38.64 5.69
125 126 1.026718 GGTCCATGGAAGGAGTTGCG 61.027 60.000 18.20 0.00 38.64 4.85
126 127 0.329596 AGGTCCATGGAAGGAGTTGC 59.670 55.000 18.20 0.45 38.64 4.17
127 128 1.065126 GGAGGTCCATGGAAGGAGTTG 60.065 57.143 18.20 0.00 38.64 3.16
129 130 0.419459 AGGAGGTCCATGGAAGGAGT 59.581 55.000 18.20 0.00 38.64 3.85
130 131 1.127343 GAGGAGGTCCATGGAAGGAG 58.873 60.000 18.20 0.00 38.64 3.69
131 132 0.417437 TGAGGAGGTCCATGGAAGGA 59.583 55.000 18.20 0.00 38.89 3.36
132 133 1.065126 GTTGAGGAGGTCCATGGAAGG 60.065 57.143 18.20 0.00 38.89 3.46
133 134 1.065126 GGTTGAGGAGGTCCATGGAAG 60.065 57.143 18.20 0.00 38.89 3.46
134 135 0.991920 GGTTGAGGAGGTCCATGGAA 59.008 55.000 18.20 0.00 38.89 3.53
135 136 0.119155 AGGTTGAGGAGGTCCATGGA 59.881 55.000 11.44 11.44 38.89 3.41
136 137 0.543749 GAGGTTGAGGAGGTCCATGG 59.456 60.000 4.97 4.97 38.89 3.66
137 138 1.065854 GTGAGGTTGAGGAGGTCCATG 60.066 57.143 0.00 0.00 38.89 3.66
138 139 1.280457 GTGAGGTTGAGGAGGTCCAT 58.720 55.000 0.00 0.00 38.89 3.41
139 140 1.185618 CGTGAGGTTGAGGAGGTCCA 61.186 60.000 0.00 0.00 38.89 4.02
142 143 2.050269 CACGTGAGGTTGAGGAGGT 58.950 57.895 10.90 0.00 0.00 3.85
143 144 1.374758 GCACGTGAGGTTGAGGAGG 60.375 63.158 22.23 0.00 0.00 4.30
144 145 1.374758 GGCACGTGAGGTTGAGGAG 60.375 63.158 22.23 0.00 0.00 3.69
148 149 2.847234 AGGGGCACGTGAGGTTGA 60.847 61.111 22.23 0.00 0.00 3.18
149 150 2.358737 GAGGGGCACGTGAGGTTG 60.359 66.667 22.23 0.00 0.00 3.77
150 151 3.637273 GGAGGGGCACGTGAGGTT 61.637 66.667 22.23 0.62 0.00 3.50
151 152 4.954118 TGGAGGGGCACGTGAGGT 62.954 66.667 22.23 0.00 0.00 3.85
152 153 4.394712 GTGGAGGGGCACGTGAGG 62.395 72.222 22.23 0.00 0.00 3.86
153 154 4.394712 GGTGGAGGGGCACGTGAG 62.395 72.222 22.23 0.00 0.00 3.51
154 155 4.954118 AGGTGGAGGGGCACGTGA 62.954 66.667 22.23 0.00 0.00 4.35
155 156 4.394712 GAGGTGGAGGGGCACGTG 62.395 72.222 12.28 12.28 0.00 4.49
157 158 3.976490 TAGGAGGTGGAGGGGCACG 62.976 68.421 0.00 0.00 0.00 5.34
158 159 2.040606 TAGGAGGTGGAGGGGCAC 59.959 66.667 0.00 0.00 0.00 5.01
159 160 2.368594 CTAGGAGGTGGAGGGGCA 59.631 66.667 0.00 0.00 0.00 5.36
160 161 2.446802 CCTAGGAGGTGGAGGGGC 60.447 72.222 1.05 0.00 0.00 5.80
161 162 2.287251 CCCTAGGAGGTGGAGGGG 59.713 72.222 11.48 0.00 45.53 4.79
163 164 1.670059 AAAACCCTAGGAGGTGGAGG 58.330 55.000 11.48 0.00 40.05 4.30
164 165 3.780850 ACATAAAACCCTAGGAGGTGGAG 59.219 47.826 11.48 0.00 40.05 3.86
165 166 3.521937 CACATAAAACCCTAGGAGGTGGA 59.478 47.826 11.48 0.00 40.05 4.02
166 167 3.265995 ACACATAAAACCCTAGGAGGTGG 59.734 47.826 11.48 0.00 40.05 4.61
168 169 5.347978 AGTACACATAAAACCCTAGGAGGT 58.652 41.667 11.48 0.00 44.00 3.85
169 170 5.163332 GGAGTACACATAAAACCCTAGGAGG 60.163 48.000 11.48 0.00 34.30 4.30
170 171 5.451520 CGGAGTACACATAAAACCCTAGGAG 60.452 48.000 11.48 2.69 0.00 3.69
171 172 4.403432 CGGAGTACACATAAAACCCTAGGA 59.597 45.833 11.48 0.00 0.00 2.94
172 173 4.442472 CCGGAGTACACATAAAACCCTAGG 60.442 50.000 0.06 0.06 0.00 3.02
173 174 4.690122 CCGGAGTACACATAAAACCCTAG 58.310 47.826 0.00 0.00 0.00 3.02
174 175 3.118665 GCCGGAGTACACATAAAACCCTA 60.119 47.826 5.05 0.00 0.00 3.53
177 178 1.662122 CGCCGGAGTACACATAAAACC 59.338 52.381 5.05 0.00 0.00 3.27
178 179 1.662122 CCGCCGGAGTACACATAAAAC 59.338 52.381 5.05 0.00 0.00 2.43
179 180 2.008045 GCCGCCGGAGTACACATAAAA 61.008 52.381 7.68 0.00 0.00 1.52
180 181 0.460635 GCCGCCGGAGTACACATAAA 60.461 55.000 7.68 0.00 0.00 1.40
181 182 1.142314 GCCGCCGGAGTACACATAA 59.858 57.895 7.68 0.00 0.00 1.90
182 183 2.809706 GCCGCCGGAGTACACATA 59.190 61.111 7.68 0.00 0.00 2.29
183 184 4.508128 CGCCGCCGGAGTACACAT 62.508 66.667 7.68 0.00 0.00 3.21
204 205 3.432051 CTTCGGCGTGCTCCCTAGG 62.432 68.421 6.85 0.06 0.00 3.02
205 206 2.105128 CTTCGGCGTGCTCCCTAG 59.895 66.667 6.85 0.00 0.00 3.02
206 207 2.361992 TCTTCGGCGTGCTCCCTA 60.362 61.111 6.85 0.00 0.00 3.53
207 208 4.070552 GTCTTCGGCGTGCTCCCT 62.071 66.667 6.85 0.00 0.00 4.20
208 209 4.070552 AGTCTTCGGCGTGCTCCC 62.071 66.667 6.85 0.00 0.00 4.30
209 210 2.811317 CAGTCTTCGGCGTGCTCC 60.811 66.667 6.85 0.00 0.00 4.70
210 211 3.482783 GCAGTCTTCGGCGTGCTC 61.483 66.667 6.85 0.00 32.97 4.26
216 217 4.719369 ACCGTCGCAGTCTTCGGC 62.719 66.667 0.00 0.00 45.76 5.54
217 218 2.805353 CACCGTCGCAGTCTTCGG 60.805 66.667 0.00 0.00 46.98 4.30
218 219 2.805353 CCACCGTCGCAGTCTTCG 60.805 66.667 0.00 0.00 0.00 3.79
231 232 4.176752 GTCCTGATCCCGGCCACC 62.177 72.222 2.24 0.00 0.00 4.61
232 233 4.176752 GGTCCTGATCCCGGCCAC 62.177 72.222 2.24 0.00 0.00 5.01
237 238 2.298158 CTGTTCCGGTCCTGATCCCG 62.298 65.000 0.00 1.51 43.82 5.14
238 239 0.976073 TCTGTTCCGGTCCTGATCCC 60.976 60.000 0.00 0.00 0.00 3.85
241 242 0.747255 CGATCTGTTCCGGTCCTGAT 59.253 55.000 0.00 8.20 0.00 2.90
242 243 1.945354 GCGATCTGTTCCGGTCCTGA 61.945 60.000 0.00 3.20 0.00 3.86
243 244 1.519455 GCGATCTGTTCCGGTCCTG 60.519 63.158 0.00 0.00 0.00 3.86
244 245 1.982395 TGCGATCTGTTCCGGTCCT 60.982 57.895 0.00 0.00 0.00 3.85
245 246 1.810030 GTGCGATCTGTTCCGGTCC 60.810 63.158 0.00 0.00 0.00 4.46
247 248 1.374252 GTGTGCGATCTGTTCCGGT 60.374 57.895 0.00 0.00 0.00 5.28
249 250 2.444624 CGGTGTGCGATCTGTTCCG 61.445 63.158 0.00 0.00 0.00 4.30
251 252 0.924090 GATCGGTGTGCGATCTGTTC 59.076 55.000 0.00 0.00 39.14 3.18
254 255 1.946156 CGGATCGGTGTGCGATCTG 60.946 63.158 4.53 0.89 41.21 2.90
255 256 2.413351 CGGATCGGTGTGCGATCT 59.587 61.111 4.53 0.00 41.21 2.75
256 257 2.658593 CCGGATCGGTGTGCGATC 60.659 66.667 0.00 0.00 42.73 3.69
266 267 1.200483 CAATCTTCGTGACCGGATCG 58.800 55.000 9.46 10.01 33.95 3.69
267 268 2.579207 TCAATCTTCGTGACCGGATC 57.421 50.000 9.46 2.18 33.95 3.36
268 269 3.543680 AATCAATCTTCGTGACCGGAT 57.456 42.857 9.46 0.00 33.95 4.18
271 272 2.742053 ACCAAATCAATCTTCGTGACCG 59.258 45.455 0.00 0.00 0.00 4.79
272 273 4.215399 TGAACCAAATCAATCTTCGTGACC 59.785 41.667 0.00 0.00 0.00 4.02
274 275 5.163864 CGATGAACCAAATCAATCTTCGTGA 60.164 40.000 0.00 0.00 35.80 4.35
276 277 4.094887 CCGATGAACCAAATCAATCTTCGT 59.905 41.667 0.00 0.00 37.61 3.85
277 278 4.591202 CCGATGAACCAAATCAATCTTCG 58.409 43.478 0.00 0.00 38.46 3.79
278 279 4.354587 GCCGATGAACCAAATCAATCTTC 58.645 43.478 0.00 0.00 32.06 2.87
279 280 3.181497 CGCCGATGAACCAAATCAATCTT 60.181 43.478 0.00 0.00 32.06 2.40
280 281 2.355756 CGCCGATGAACCAAATCAATCT 59.644 45.455 0.00 0.00 32.06 2.40
281 282 2.541588 CCGCCGATGAACCAAATCAATC 60.542 50.000 0.00 0.00 32.06 2.67
282 283 1.405105 CCGCCGATGAACCAAATCAAT 59.595 47.619 0.00 0.00 32.06 2.57
283 284 0.808125 CCGCCGATGAACCAAATCAA 59.192 50.000 0.00 0.00 32.06 2.57
284 285 1.029408 CCCGCCGATGAACCAAATCA 61.029 55.000 0.00 0.00 0.00 2.57
285 286 0.746563 TCCCGCCGATGAACCAAATC 60.747 55.000 0.00 0.00 0.00 2.17
287 288 0.746563 GATCCCGCCGATGAACCAAA 60.747 55.000 0.00 0.00 0.00 3.28
288 289 1.153249 GATCCCGCCGATGAACCAA 60.153 57.895 0.00 0.00 0.00 3.67
289 290 2.504032 GATCCCGCCGATGAACCA 59.496 61.111 0.00 0.00 0.00 3.67
290 291 2.661866 CGATCCCGCCGATGAACC 60.662 66.667 0.00 0.00 0.00 3.62
300 301 2.728817 GGTCTACCAGCGATCCCG 59.271 66.667 0.00 0.00 35.85 5.14
307 308 0.108281 GGGTTTCTCGGTCTACCAGC 60.108 60.000 0.00 0.00 35.14 4.85
309 310 1.263356 CAGGGTTTCTCGGTCTACCA 58.737 55.000 0.00 0.00 35.14 3.25
311 312 1.204231 GACCAGGGTTTCTCGGTCTAC 59.796 57.143 0.00 0.00 38.98 2.59
312 313 1.553706 GACCAGGGTTTCTCGGTCTA 58.446 55.000 0.00 0.00 38.98 2.59
314 315 1.080025 CGACCAGGGTTTCTCGGTC 60.080 63.158 0.00 0.00 38.82 4.79
315 316 3.057337 CGACCAGGGTTTCTCGGT 58.943 61.111 0.00 0.00 32.27 4.69
316 317 2.434359 GCGACCAGGGTTTCTCGG 60.434 66.667 0.00 0.00 0.00 4.63
317 318 1.446272 GAGCGACCAGGGTTTCTCG 60.446 63.158 0.00 0.00 0.00 4.04
319 320 1.536662 AGGAGCGACCAGGGTTTCT 60.537 57.895 5.84 0.00 42.04 2.52
320 321 1.376037 CAGGAGCGACCAGGGTTTC 60.376 63.158 5.84 0.00 42.04 2.78
321 322 1.415672 TTCAGGAGCGACCAGGGTTT 61.416 55.000 5.84 0.00 42.04 3.27
322 323 1.415672 TTTCAGGAGCGACCAGGGTT 61.416 55.000 5.84 0.00 42.04 4.11
324 325 1.376037 GTTTCAGGAGCGACCAGGG 60.376 63.158 5.84 0.00 42.04 4.45
325 326 1.738099 CGTTTCAGGAGCGACCAGG 60.738 63.158 5.84 0.00 42.04 4.45
326 327 1.006102 ACGTTTCAGGAGCGACCAG 60.006 57.895 0.00 0.00 42.04 4.00
327 328 1.006571 GACGTTTCAGGAGCGACCA 60.007 57.895 0.00 0.00 42.04 4.02
328 329 2.087009 CGACGTTTCAGGAGCGACC 61.087 63.158 0.00 0.00 39.35 4.79
329 330 2.087009 CCGACGTTTCAGGAGCGAC 61.087 63.158 0.00 0.00 0.00 5.19
330 331 2.196382 CTCCGACGTTTCAGGAGCGA 62.196 60.000 14.32 0.00 44.09 4.93
331 332 1.801913 CTCCGACGTTTCAGGAGCG 60.802 63.158 14.32 0.57 44.09 5.03
334 335 1.034356 TTCACTCCGACGTTTCAGGA 58.966 50.000 0.00 0.00 0.00 3.86
338 339 0.249573 TGGGTTCACTCCGACGTTTC 60.250 55.000 0.00 0.00 0.00 2.78
339 340 0.178533 TTGGGTTCACTCCGACGTTT 59.821 50.000 0.00 0.00 0.00 3.60
340 341 0.178533 TTTGGGTTCACTCCGACGTT 59.821 50.000 0.00 0.00 0.00 3.99
341 342 0.531311 GTTTGGGTTCACTCCGACGT 60.531 55.000 0.00 0.00 0.00 4.34
342 343 1.226030 GGTTTGGGTTCACTCCGACG 61.226 60.000 0.00 0.00 0.00 5.12
343 344 1.226030 CGGTTTGGGTTCACTCCGAC 61.226 60.000 0.00 0.00 39.80 4.79
346 347 0.179040 TGACGGTTTGGGTTCACTCC 60.179 55.000 0.00 0.00 0.00 3.85
347 348 0.942252 GTGACGGTTTGGGTTCACTC 59.058 55.000 0.00 0.00 0.00 3.51
349 350 1.449726 GGGTGACGGTTTGGGTTCAC 61.450 60.000 0.00 0.00 0.00 3.18
350 351 1.152922 GGGTGACGGTTTGGGTTCA 60.153 57.895 0.00 0.00 0.00 3.18
352 353 2.203238 CGGGTGACGGTTTGGGTT 60.203 61.111 0.00 0.00 39.42 4.11
354 355 2.358247 CTCGGGTGACGGTTTGGG 60.358 66.667 0.00 0.00 44.45 4.12
355 356 2.358247 CCTCGGGTGACGGTTTGG 60.358 66.667 0.00 0.00 44.45 3.28
357 358 2.142104 TTCCCTCGGGTGACGGTTT 61.142 57.895 1.18 0.00 44.45 3.27
358 359 2.524887 TTCCCTCGGGTGACGGTT 60.525 61.111 1.18 0.00 44.45 4.44
359 360 3.308705 GTTCCCTCGGGTGACGGT 61.309 66.667 1.18 0.00 44.45 4.83
360 361 4.430765 CGTTCCCTCGGGTGACGG 62.431 72.222 18.91 7.01 44.45 4.79
367 368 4.096003 ATGGTGGCGTTCCCTCGG 62.096 66.667 0.00 0.00 0.00 4.63
368 369 2.819595 CATGGTGGCGTTCCCTCG 60.820 66.667 0.00 0.00 0.00 4.63
369 370 2.270874 ATCCATGGTGGCGTTCCCTC 62.271 60.000 12.58 0.00 37.47 4.30
372 373 0.965363 AACATCCATGGTGGCGTTCC 60.965 55.000 12.58 0.00 37.47 3.62
374 375 2.092429 AGATAACATCCATGGTGGCGTT 60.092 45.455 12.58 12.77 37.47 4.84
392 393 4.030913 TCGGGTTTTCATCCTGTCTAGAT 58.969 43.478 0.00 0.00 33.44 1.98
400 401 2.899303 AATGGTCGGGTTTTCATCCT 57.101 45.000 0.00 0.00 0.00 3.24
439 440 1.478510 TGTTGTTTTTGGCGGTGACAT 59.521 42.857 0.00 0.00 0.00 3.06
452 453 3.547746 ACTATGTTGGACGGTGTTGTTT 58.452 40.909 0.00 0.00 0.00 2.83
460 461 3.181489 GGTGAGTCTACTATGTTGGACGG 60.181 52.174 0.00 0.00 34.34 4.79
465 466 5.043903 CGGATTGGTGAGTCTACTATGTTG 58.956 45.833 0.00 0.00 0.00 3.33
485 486 3.436924 TGCTAAGACGCTCGCGGA 61.437 61.111 16.18 0.00 44.69 5.54
488 489 3.248171 CGGTGCTAAGACGCTCGC 61.248 66.667 0.00 0.00 0.00 5.03
494 496 0.928229 CATTACGGCGGTGCTAAGAC 59.072 55.000 13.24 0.00 0.00 3.01
498 500 0.249699 CATCCATTACGGCGGTGCTA 60.250 55.000 13.24 0.00 33.14 3.49
505 507 0.884704 ATGTCGGCATCCATTACGGC 60.885 55.000 0.00 0.00 33.14 5.68
525 527 9.157104 GCTTAGATAGGTCTAGAATAATTTGGC 57.843 37.037 0.00 0.00 38.17 4.52
567 569 3.663815 GAGGCTGGAGGAGTCCCGA 62.664 68.421 5.25 0.00 43.15 5.14
656 665 1.884235 AAAAGTGAGAAGAGGGTGCG 58.116 50.000 0.00 0.00 0.00 5.34
674 683 3.392616 AGAGAGGGCTGTCTCAAAGAAAA 59.607 43.478 16.40 0.00 44.83 2.29
678 687 2.566724 AGAAGAGAGGGCTGTCTCAAAG 59.433 50.000 16.40 0.00 44.83 2.77
682 691 0.738389 CGAGAAGAGAGGGCTGTCTC 59.262 60.000 8.77 8.77 43.03 3.36
684 693 1.140804 GCGAGAAGAGAGGGCTGTC 59.859 63.158 0.00 0.00 0.00 3.51
687 696 2.361865 ACGCGAGAAGAGAGGGCT 60.362 61.111 15.93 0.00 0.00 5.19
688 697 2.202676 CACGCGAGAAGAGAGGGC 60.203 66.667 15.93 0.00 0.00 5.19
689 698 1.153939 CACACGCGAGAAGAGAGGG 60.154 63.158 15.93 0.00 0.00 4.30
690 699 0.241213 TTCACACGCGAGAAGAGAGG 59.759 55.000 15.93 0.00 0.00 3.69
691 700 1.716581 GTTTCACACGCGAGAAGAGAG 59.283 52.381 15.93 0.00 0.00 3.20
692 701 1.602165 GGTTTCACACGCGAGAAGAGA 60.602 52.381 15.93 1.24 0.00 3.10
913 966 1.720077 GGATTGGGGATCTGGGGGAC 61.720 65.000 0.00 0.00 35.02 4.46
1230 1319 4.756502 TCTCGTCGAAGATCTTGTAGAGA 58.243 43.478 14.00 16.70 40.67 3.10
1636 1822 3.251571 GTCTGCAGTTCTAACTAACCCG 58.748 50.000 14.67 0.00 37.08 5.28
1725 1996 4.452455 CGCACTCCAATATAACCAGATTCC 59.548 45.833 0.00 0.00 0.00 3.01
1804 2085 7.776107 TCATCAGAAACCACAATTAAACAACA 58.224 30.769 0.00 0.00 0.00 3.33
1817 2098 5.759273 CCTGCAAAATTTTCATCAGAAACCA 59.241 36.000 18.57 0.00 43.09 3.67
1899 2330 5.411669 GGAAACAAGATTCGGACAAGTGTAT 59.588 40.000 0.00 0.00 0.00 2.29
1931 2428 8.730680 ACCACACTGAGTAATAATGCTAAAAAG 58.269 33.333 0.00 0.00 0.00 2.27
2084 2626 0.911769 TTGGTGATCTGGGTAGCTGG 59.088 55.000 0.00 0.00 0.00 4.85
2085 2627 1.745141 GCTTGGTGATCTGGGTAGCTG 60.745 57.143 0.00 0.00 0.00 4.24
2086 2628 0.543749 GCTTGGTGATCTGGGTAGCT 59.456 55.000 0.00 0.00 0.00 3.32
2087 2629 0.253044 TGCTTGGTGATCTGGGTAGC 59.747 55.000 0.00 0.00 0.00 3.58
2088 2630 1.278985 TGTGCTTGGTGATCTGGGTAG 59.721 52.381 0.00 0.00 0.00 3.18
2089 2631 1.357137 TGTGCTTGGTGATCTGGGTA 58.643 50.000 0.00 0.00 0.00 3.69
2090 2632 0.700564 ATGTGCTTGGTGATCTGGGT 59.299 50.000 0.00 0.00 0.00 4.51
2266 6085 1.855213 GCGCCACAACATCAGCTTCA 61.855 55.000 0.00 0.00 0.00 3.02
2332 6151 2.887152 GCCATTCAACTCAACCTTCACT 59.113 45.455 0.00 0.00 0.00 3.41
2483 6304 8.883954 TGAATATCAGAAATAGTGCTTCAGAG 57.116 34.615 0.00 0.00 0.00 3.35
2484 6305 9.671279 TTTGAATATCAGAAATAGTGCTTCAGA 57.329 29.630 0.00 0.00 0.00 3.27
2645 6621 6.599244 TCCAAGCAAAATGTCTGAGGTATAAG 59.401 38.462 0.00 0.00 0.00 1.73
2916 6892 4.224594 AGGAATTCATCAGAGAGCTCACAA 59.775 41.667 17.77 2.46 0.00 3.33
3247 7237 8.723942 AATAGCATACTATGGCACTTAATAGC 57.276 34.615 0.00 0.00 39.13 2.97
3284 7275 6.201806 CGAAGAAAACAGACTGAACTCTTCAT 59.798 38.462 26.29 11.61 39.30 2.57
3405 7399 6.196918 TGGATCTCTGCATTCTCCATTAAT 57.803 37.500 3.96 0.00 31.19 1.40
3536 7530 8.876181 TCGACTAATTGGGATAAATTGGAGATA 58.124 33.333 0.00 0.00 33.56 1.98
4018 8185 6.459257 TGGCAAAACTATAATGCAAAAACG 57.541 33.333 0.00 0.00 41.80 3.60
4042 8209 2.172717 GTGTAGTGGGGGCAGTATCATT 59.827 50.000 0.00 0.00 0.00 2.57
4043 8210 1.768870 GTGTAGTGGGGGCAGTATCAT 59.231 52.381 0.00 0.00 0.00 2.45
4044 8211 1.200519 GTGTAGTGGGGGCAGTATCA 58.799 55.000 0.00 0.00 0.00 2.15
4047 8214 0.472161 TGTGTGTAGTGGGGGCAGTA 60.472 55.000 0.00 0.00 0.00 2.74
4048 8215 1.768482 TGTGTGTAGTGGGGGCAGT 60.768 57.895 0.00 0.00 0.00 4.40
4049 8216 1.302511 GTGTGTGTAGTGGGGGCAG 60.303 63.158 0.00 0.00 0.00 4.85
4051 8218 1.599797 GTGTGTGTGTAGTGGGGGC 60.600 63.158 0.00 0.00 0.00 5.80
4057 8224 4.632251 TGAAAAATCGTGTGTGTGTGTAGT 59.368 37.500 0.00 0.00 0.00 2.73
4059 8226 4.632251 ACTGAAAAATCGTGTGTGTGTGTA 59.368 37.500 0.00 0.00 0.00 2.90
4060 8227 3.438781 ACTGAAAAATCGTGTGTGTGTGT 59.561 39.130 0.00 0.00 0.00 3.72
4061 8228 3.785521 CACTGAAAAATCGTGTGTGTGTG 59.214 43.478 0.00 0.00 0.00 3.82
4062 8229 3.181501 CCACTGAAAAATCGTGTGTGTGT 60.182 43.478 0.00 0.00 0.00 3.72
4063 8230 3.064682 TCCACTGAAAAATCGTGTGTGTG 59.935 43.478 0.00 0.00 0.00 3.82
4064 8231 3.064820 GTCCACTGAAAAATCGTGTGTGT 59.935 43.478 0.00 0.00 0.00 3.72
4065 8232 3.617669 GTCCACTGAAAAATCGTGTGTG 58.382 45.455 0.00 0.00 0.00 3.82
4081 8248 2.429610 TCTTCCTTATACTGCCGTCCAC 59.570 50.000 0.00 0.00 0.00 4.02
4086 8253 4.202161 ACAGACATCTTCCTTATACTGCCG 60.202 45.833 0.00 0.00 0.00 5.69
4229 8715 8.682936 ATAGCCTCATTATCTTTTTCGTCATT 57.317 30.769 0.00 0.00 0.00 2.57
4238 8724 8.213679 TGCTAACTCAATAGCCTCATTATCTTT 58.786 33.333 4.06 0.00 46.19 2.52
4244 8730 6.359804 TGAATGCTAACTCAATAGCCTCATT 58.640 36.000 4.06 0.00 46.19 2.57
4245 8731 5.933617 TGAATGCTAACTCAATAGCCTCAT 58.066 37.500 4.06 0.00 46.19 2.90
4297 8783 3.959495 ACCTGATAATTGGTCAGCCAT 57.041 42.857 14.07 3.31 45.56 4.40
4328 8814 6.418946 ACTTCTATCAAACTGGGAAAGGATC 58.581 40.000 0.00 0.00 0.00 3.36
4566 9052 8.437575 TCTTTGGTGAACCTTAGATTCTTTAGT 58.562 33.333 0.37 0.00 36.82 2.24
4567 9053 8.848474 TCTTTGGTGAACCTTAGATTCTTTAG 57.152 34.615 0.37 0.00 36.82 1.85
4585 9101 8.962884 ATACAAAAATTCAAAAGCTCTTTGGT 57.037 26.923 16.28 9.85 32.36 3.67
4605 9121 9.917129 GGAATATGCATGATGATTTCAATACAA 57.083 29.630 10.16 0.00 38.03 2.41
4640 9170 3.129287 CCACCTGTAGCAAATAAAGGCAG 59.871 47.826 0.00 0.00 42.19 4.85
4642 9172 2.159240 GCCACCTGTAGCAAATAAAGGC 60.159 50.000 0.00 0.00 42.19 4.35
4651 9182 0.182537 AAACTGTGCCACCTGTAGCA 59.817 50.000 0.00 0.00 36.44 3.49
4857 9401 6.743575 ATGTAAACAAGCATGAGAACCTAC 57.256 37.500 0.00 0.00 0.00 3.18
4858 9402 6.939730 TGAATGTAAACAAGCATGAGAACCTA 59.060 34.615 0.00 0.00 0.00 3.08
4859 9403 5.769662 TGAATGTAAACAAGCATGAGAACCT 59.230 36.000 0.00 0.00 0.00 3.50
4860 9404 6.012658 TGAATGTAAACAAGCATGAGAACC 57.987 37.500 0.00 0.00 0.00 3.62
4861 9405 8.524870 AAATGAATGTAAACAAGCATGAGAAC 57.475 30.769 0.00 0.00 0.00 3.01
4862 9406 8.358895 TGAAATGAATGTAAACAAGCATGAGAA 58.641 29.630 0.00 0.00 0.00 2.87
4863 9407 7.884257 TGAAATGAATGTAAACAAGCATGAGA 58.116 30.769 0.00 0.00 0.00 3.27
4864 9408 7.274904 CCTGAAATGAATGTAAACAAGCATGAG 59.725 37.037 0.00 0.00 0.00 2.90
4865 9409 7.092079 CCTGAAATGAATGTAAACAAGCATGA 58.908 34.615 0.00 0.00 0.00 3.07
4867 9411 6.400568 CCCTGAAATGAATGTAAACAAGCAT 58.599 36.000 0.00 0.00 0.00 3.79
4930 9514 8.990163 AATTAAACGGGTGATAGGATGTAATT 57.010 30.769 0.00 0.00 0.00 1.40
5115 9703 5.280676 GGGAATGATTGGCATATACCTGAGA 60.281 44.000 0.00 0.00 35.78 3.27
5116 9704 4.946157 GGGAATGATTGGCATATACCTGAG 59.054 45.833 0.00 0.00 35.78 3.35
5266 9857 1.639108 GAACCCCCTGTACCAAGGAAT 59.361 52.381 0.76 0.00 40.02 3.01
5406 10006 4.134563 GGTTGCCTTTGAACTTGTCTCTA 58.865 43.478 0.00 0.00 0.00 2.43
5407 10007 2.952310 GGTTGCCTTTGAACTTGTCTCT 59.048 45.455 0.00 0.00 0.00 3.10
5524 10124 7.174946 GGACACATGGATTCAAGAAACTCTTTA 59.825 37.037 0.00 0.00 33.78 1.85
5753 12165 0.248215 GCTCAAATTCCACATCCGCG 60.248 55.000 0.00 0.00 0.00 6.46
5924 12342 7.907389 TGCTATAATAAGGTCCATGTTAGAGG 58.093 38.462 7.19 0.00 0.00 3.69
6005 12432 6.292919 CGAACCTCAAATCGAAGAACTCTTTT 60.293 38.462 0.00 0.00 43.58 2.27
6122 12746 5.277825 TGTTTTCCAACATTACTTTCTGCG 58.722 37.500 0.00 0.00 38.03 5.18
6206 12830 8.548025 TCTTCCTGTTATTGACTATGATTTCCA 58.452 33.333 0.00 0.00 0.00 3.53
6234 12858 2.035704 CAGCTCATCGAATAGGTCTGCT 59.964 50.000 0.00 0.00 0.00 4.24
6247 12871 1.666054 CCCTTCTGCTTCAGCTCATC 58.334 55.000 0.00 0.00 42.66 2.92
6249 12873 1.002868 GCCCTTCTGCTTCAGCTCA 60.003 57.895 0.00 0.00 42.66 4.26
6456 13096 3.066481 GCAGGATTTCAAGATCAGCCTTC 59.934 47.826 0.00 0.00 0.00 3.46
6457 13097 3.022406 GCAGGATTTCAAGATCAGCCTT 58.978 45.455 0.00 0.00 0.00 4.35
6495 13135 1.622811 AGGTCTCTCAGCCAAAGAGTG 59.377 52.381 7.30 0.00 40.92 3.51
6601 13254 2.219674 GTGAGAAGAGCAGTGAAACACG 59.780 50.000 0.00 0.00 41.43 4.49
6721 13387 1.809567 CTGTTTCTTGGGTGCTGGCC 61.810 60.000 0.00 0.00 0.00 5.36
6801 13470 3.093057 ACTACCTAGTCCTCTGCAACTG 58.907 50.000 0.00 0.00 0.00 3.16
7195 13905 3.821033 AGTGGACACCATCAGCTTAAAAC 59.179 43.478 0.00 0.00 35.28 2.43
7340 14074 3.062466 CTCTCACGGTCGGGCTCA 61.062 66.667 0.00 0.00 0.00 4.26
7351 14085 1.070445 CCCCCATCATCGCTCTCAC 59.930 63.158 0.00 0.00 0.00 3.51
7636 14408 3.151022 CGGAGGGAGGAGCCTCAC 61.151 72.222 17.68 14.51 46.28 3.51
7739 14516 4.037803 ACATCTTCATCCTCAGTCTCATCG 59.962 45.833 0.00 0.00 0.00 3.84
7746 14526 2.167281 CCGACACATCTTCATCCTCAGT 59.833 50.000 0.00 0.00 0.00 3.41
7918 14715 5.449177 GCCTCAGCAACCTAACATAACATTC 60.449 44.000 0.00 0.00 39.53 2.67
7941 14738 0.861837 CGGATTAGCTCACGGAATGC 59.138 55.000 0.00 0.00 0.00 3.56
7959 14756 3.123621 GTGATAGGCACAAGTCTCAAACG 59.876 47.826 0.00 0.00 46.91 3.60
7989 14786 5.590663 TCACTCGTCTCAGCATATTAGAACT 59.409 40.000 0.00 0.00 0.00 3.01
8008 14805 2.166459 TCGAGGATGTCCACATTCACTC 59.834 50.000 1.30 5.63 36.57 3.51
8015 14812 5.496556 ACATTAAAATCGAGGATGTCCACA 58.503 37.500 1.30 0.00 38.89 4.17
8027 14824 6.779117 AGCATCACTTCTGACATTAAAATCG 58.221 36.000 0.00 0.00 0.00 3.34
8057 14855 5.163561 ACCCAATTTACTGACACAACACAAG 60.164 40.000 0.00 0.00 0.00 3.16
8064 14862 5.414454 GCATAGAACCCAATTTACTGACACA 59.586 40.000 0.00 0.00 0.00 3.72
8087 14885 1.404391 CAACCTCAATGGATGCTGAGC 59.596 52.381 0.00 0.00 38.19 4.26
8150 14957 8.939201 AATTACTGTATCATGTCACAGAGAAG 57.061 34.615 25.83 9.11 43.99 2.85
8151 14958 9.154847 CAAATTACTGTATCATGTCACAGAGAA 57.845 33.333 25.83 20.27 43.99 2.87
8292 15099 9.969001 ACCTGGTTTAAATAGCTGAACTAAATA 57.031 29.630 0.00 0.00 33.57 1.40
8322 15129 6.881065 ACTAGAGTAAGAATTTGCTTGCATCA 59.119 34.615 0.00 0.00 33.60 3.07
8348 15155 2.290367 CGATCTTGCAACCAAACACTCA 59.710 45.455 0.00 0.00 0.00 3.41
8359 15166 2.290260 ACCTGAACATCCGATCTTGCAA 60.290 45.455 0.00 0.00 0.00 4.08
8368 15175 2.550978 GGTATGACACCTGAACATCCG 58.449 52.381 0.00 0.00 44.79 4.18
8387 15194 4.171005 CAGAAATTGTGCACATAGCTTGG 58.829 43.478 22.39 4.44 45.94 3.61
8484 15292 9.092876 CTGAGCTTATCCTTCTACTTAGTTTTG 57.907 37.037 0.00 0.00 0.00 2.44
8485 15293 8.817876 ACTGAGCTTATCCTTCTACTTAGTTTT 58.182 33.333 0.00 0.00 0.00 2.43
8493 15301 9.601217 TTTGATAAACTGAGCTTATCCTTCTAC 57.399 33.333 11.78 0.00 35.68 2.59
8496 15304 9.561270 GTTTTTGATAAACTGAGCTTATCCTTC 57.439 33.333 11.78 0.00 35.68 3.46
8621 15437 4.836736 CCCTAGATGCCATCATTGGAAAAT 59.163 41.667 7.56 0.00 46.92 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.