Multiple sequence alignment - TraesCS6A01G268000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G268000 chr6A 100.000 4246 0 0 1 4246 494439285 494443530 0.000000e+00 7841.0
1 TraesCS6A01G268000 chr6A 100.000 390 0 0 4480 4869 494443764 494444153 0.000000e+00 721.0
2 TraesCS6A01G268000 chr6A 93.926 461 28 0 1 461 184592048 184591588 0.000000e+00 697.0
3 TraesCS6A01G268000 chr6A 94.937 79 3 1 1494 1572 235083782 235083859 6.620000e-24 122.0
4 TraesCS6A01G268000 chr6D 96.392 2134 43 8 2133 4246 349988842 349986723 0.000000e+00 3483.0
5 TraesCS6A01G268000 chr6D 90.805 1044 49 16 495 1496 349990422 349989384 0.000000e+00 1352.0
6 TraesCS6A01G268000 chr6D 93.393 560 12 6 1571 2110 349989382 349988828 0.000000e+00 806.0
7 TraesCS6A01G268000 chr6D 93.191 470 30 2 1 469 97818011 97817543 0.000000e+00 689.0
8 TraesCS6A01G268000 chr6D 90.446 157 12 3 2394 2549 303060007 303059853 2.300000e-48 204.0
9 TraesCS6A01G268000 chr6D 84.762 105 7 4 4480 4584 349986689 349986594 4.010000e-16 97.1
10 TraesCS6A01G268000 chr6B 94.086 930 43 4 2842 3762 530129525 530130451 0.000000e+00 1402.0
11 TraesCS6A01G268000 chr6B 95.938 714 24 3 2133 2845 530128704 530129413 0.000000e+00 1153.0
12 TraesCS6A01G268000 chr6B 84.985 1019 78 40 455 1417 530127102 530128101 0.000000e+00 965.0
13 TraesCS6A01G268000 chr6B 90.283 566 22 15 1570 2110 530128161 530128718 0.000000e+00 710.0
14 TraesCS6A01G268000 chr6B 92.600 473 33 2 3 474 423013649 423013178 0.000000e+00 678.0
15 TraesCS6A01G268000 chr6B 93.424 441 15 6 3792 4231 530130452 530130879 4.110000e-180 641.0
16 TraesCS6A01G268000 chr6B 86.579 380 30 5 4482 4844 530131210 530131585 2.730000e-107 399.0
17 TraesCS6A01G268000 chr4A 97.831 461 10 0 1 461 578180544 578180084 0.000000e+00 797.0
18 TraesCS6A01G268000 chr4A 89.899 99 4 5 1474 1571 712060643 712060736 6.620000e-24 122.0
19 TraesCS6A01G268000 chr5A 95.975 472 17 1 1 472 33923326 33923795 0.000000e+00 765.0
20 TraesCS6A01G268000 chr5A 95.228 461 22 0 1 461 524707778 524708238 0.000000e+00 730.0
21 TraesCS6A01G268000 chr1A 95.127 472 20 2 1 472 10695751 10696219 0.000000e+00 741.0
22 TraesCS6A01G268000 chr1A 94.553 459 25 0 3 461 365645197 365645655 0.000000e+00 710.0
23 TraesCS6A01G268000 chr1A 89.744 156 14 2 2394 2549 155857859 155857706 1.070000e-46 198.0
24 TraesCS6A01G268000 chr7D 93.939 462 27 1 1 461 568858520 568858981 0.000000e+00 697.0
25 TraesCS6A01G268000 chr7D 89.172 157 15 2 2394 2550 454079230 454079076 1.380000e-45 195.0
26 TraesCS6A01G268000 chr7D 97.333 75 2 0 1497 1571 45636117 45636191 1.420000e-25 128.0
27 TraesCS6A01G268000 chr1B 82.817 355 36 10 1115 1445 654080962 654080609 1.330000e-75 294.0
28 TraesCS6A01G268000 chr1B 93.103 87 6 0 1489 1575 26843418 26843332 1.420000e-25 128.0
29 TraesCS6A01G268000 chr1B 96.053 76 3 0 1496 1571 126260544 126260619 1.840000e-24 124.0
30 TraesCS6A01G268000 chr4D 90.446 157 13 2 2394 2550 74079504 74079350 6.390000e-49 206.0
31 TraesCS6A01G268000 chr5D 88.750 160 16 2 2394 2553 175300057 175299900 1.380000e-45 195.0
32 TraesCS6A01G268000 chr5D 97.333 75 2 0 1497 1571 418873986 418874060 1.420000e-25 128.0
33 TraesCS6A01G268000 chr2A 87.719 171 15 5 2382 2549 79316172 79316005 1.380000e-45 195.0
34 TraesCS6A01G268000 chr5B 87.952 166 15 5 2393 2558 328105887 328105727 1.790000e-44 191.0
35 TraesCS6A01G268000 chr3D 94.118 85 5 0 1493 1577 591238981 591239065 3.960000e-26 130.0
36 TraesCS6A01G268000 chr7A 92.135 89 6 1 1494 1581 206709848 206709760 1.840000e-24 124.0
37 TraesCS6A01G268000 chr2D 93.023 86 3 3 1496 1580 120560097 120560014 6.620000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G268000 chr6A 494439285 494444153 4868 False 4281.000000 7841 100.0000 1 4869 2 chr6A.!!$F2 4868
1 TraesCS6A01G268000 chr6D 349986594 349990422 3828 True 1434.525000 3483 91.3380 495 4584 4 chr6D.!!$R3 4089
2 TraesCS6A01G268000 chr6B 530127102 530131585 4483 False 878.333333 1402 90.8825 455 4844 6 chr6B.!!$F1 4389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.034863 GGATAAGGACAAACCGCCCA 60.035 55.000 0.0 0.0 44.74 5.36 F
929 960 0.108567 GACGAAGAGGAAGCCACTCC 60.109 60.000 0.0 0.0 35.58 3.85 F
933 968 0.836400 AAGAGGAAGCCACTCCCGAA 60.836 55.000 0.0 0.0 35.95 4.30 F
936 971 0.836400 AGGAAGCCACTCCCGAAAGA 60.836 55.000 0.0 0.0 35.95 2.52 F
1082 1117 1.067821 GCGGTCTTCCCTGTCAGATAG 59.932 57.143 0.0 0.0 0.00 2.08 F
2118 2235 1.073125 TCTTGATTTTGGTCCCTCGCA 59.927 47.619 0.0 0.0 0.00 5.10 F
2124 2241 1.475403 TTTGGTCCCTCGCAAAAACA 58.525 45.000 0.0 0.0 0.00 2.83 F
2127 2244 1.825474 TGGTCCCTCGCAAAAACAAAA 59.175 42.857 0.0 0.0 0.00 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 1690 0.035458 AGGGTGTGTGCTCAGCTAAC 59.965 55.000 0.00 0.00 36.29 2.34 R
2145 2262 2.034179 GGGCCACAAGAAATATAACGCC 59.966 50.000 4.39 0.00 0.00 5.68 R
2329 2449 2.096019 CGAACTGAAAGCTTTCTCCAGC 60.096 50.000 33.03 19.74 37.60 4.85 R
2569 2689 6.073167 CGAATCAAGATAATTGAGCTGCTCAT 60.073 38.462 30.80 20.19 40.39 2.90 R
3037 3273 3.585862 TCAAATCCTCACAGACGCTAAC 58.414 45.455 0.00 0.00 0.00 2.34 R
3213 3449 2.683968 TCAACCACGTAGATCTGCAAC 58.316 47.619 11.58 0.00 0.00 4.17 R
3597 3834 2.802816 CAAAAGGAGTGGAGAACGAGTG 59.197 50.000 0.00 0.00 0.00 3.51 R
4045 4299 3.438781 GGTAAATTTGATGCGGTCAGACA 59.561 43.478 2.17 0.00 38.29 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.517703 CGCCGACGACCTCGAGAC 62.518 72.222 15.71 6.76 46.14 3.36
31 32 4.517703 GCCGACGACCTCGAGACG 62.518 72.222 22.90 22.90 46.14 4.18
32 33 2.812609 CCGACGACCTCGAGACGA 60.813 66.667 28.26 0.00 46.14 4.20
33 34 2.394912 CGACGACCTCGAGACGAC 59.605 66.667 28.26 22.86 46.14 4.34
34 35 2.783935 GACGACCTCGAGACGACC 59.216 66.667 28.26 18.76 43.02 4.79
35 36 1.741032 GACGACCTCGAGACGACCT 60.741 63.158 28.26 13.42 43.02 3.85
36 37 0.459237 GACGACCTCGAGACGACCTA 60.459 60.000 28.26 0.00 43.02 3.08
37 38 0.459934 ACGACCTCGAGACGACCTAG 60.460 60.000 28.26 8.79 43.02 3.02
38 39 0.179116 CGACCTCGAGACGACCTAGA 60.179 60.000 15.71 0.00 43.02 2.43
39 40 1.289276 GACCTCGAGACGACCTAGAC 58.711 60.000 15.71 0.00 0.00 2.59
40 41 0.107752 ACCTCGAGACGACCTAGACC 60.108 60.000 15.71 0.00 0.00 3.85
41 42 0.814812 CCTCGAGACGACCTAGACCC 60.815 65.000 15.71 0.00 0.00 4.46
42 43 0.814812 CTCGAGACGACCTAGACCCC 60.815 65.000 6.58 0.00 0.00 4.95
43 44 1.823041 CGAGACGACCTAGACCCCC 60.823 68.421 0.00 0.00 0.00 5.40
44 45 1.305623 GAGACGACCTAGACCCCCA 59.694 63.158 0.00 0.00 0.00 4.96
45 46 0.752376 GAGACGACCTAGACCCCCAG 60.752 65.000 0.00 0.00 0.00 4.45
46 47 2.363925 ACGACCTAGACCCCCAGC 60.364 66.667 0.00 0.00 0.00 4.85
47 48 3.528370 CGACCTAGACCCCCAGCG 61.528 72.222 0.00 0.00 0.00 5.18
48 49 2.043248 GACCTAGACCCCCAGCGA 60.043 66.667 0.00 0.00 0.00 4.93
49 50 2.363925 ACCTAGACCCCCAGCGAC 60.364 66.667 0.00 0.00 0.00 5.19
50 51 2.363795 CCTAGACCCCCAGCGACA 60.364 66.667 0.00 0.00 0.00 4.35
51 52 1.987855 CCTAGACCCCCAGCGACAA 60.988 63.158 0.00 0.00 0.00 3.18
52 53 1.517832 CTAGACCCCCAGCGACAAG 59.482 63.158 0.00 0.00 0.00 3.16
53 54 0.970937 CTAGACCCCCAGCGACAAGA 60.971 60.000 0.00 0.00 0.00 3.02
54 55 1.255667 TAGACCCCCAGCGACAAGAC 61.256 60.000 0.00 0.00 0.00 3.01
55 56 2.847234 ACCCCCAGCGACAAGACA 60.847 61.111 0.00 0.00 0.00 3.41
56 57 2.391724 GACCCCCAGCGACAAGACAA 62.392 60.000 0.00 0.00 0.00 3.18
57 58 1.228124 CCCCCAGCGACAAGACAAA 60.228 57.895 0.00 0.00 0.00 2.83
58 59 1.237285 CCCCCAGCGACAAGACAAAG 61.237 60.000 0.00 0.00 0.00 2.77
59 60 0.250295 CCCCAGCGACAAGACAAAGA 60.250 55.000 0.00 0.00 0.00 2.52
60 61 1.593196 CCCAGCGACAAGACAAAGAA 58.407 50.000 0.00 0.00 0.00 2.52
61 62 1.946768 CCCAGCGACAAGACAAAGAAA 59.053 47.619 0.00 0.00 0.00 2.52
62 63 2.031682 CCCAGCGACAAGACAAAGAAAG 60.032 50.000 0.00 0.00 0.00 2.62
63 64 2.031682 CCAGCGACAAGACAAAGAAAGG 60.032 50.000 0.00 0.00 0.00 3.11
64 65 2.872245 CAGCGACAAGACAAAGAAAGGA 59.128 45.455 0.00 0.00 0.00 3.36
65 66 3.059325 CAGCGACAAGACAAAGAAAGGAG 60.059 47.826 0.00 0.00 0.00 3.69
66 67 3.131396 GCGACAAGACAAAGAAAGGAGA 58.869 45.455 0.00 0.00 0.00 3.71
67 68 3.185391 GCGACAAGACAAAGAAAGGAGAG 59.815 47.826 0.00 0.00 0.00 3.20
68 69 4.621991 CGACAAGACAAAGAAAGGAGAGA 58.378 43.478 0.00 0.00 0.00 3.10
69 70 5.233988 CGACAAGACAAAGAAAGGAGAGAT 58.766 41.667 0.00 0.00 0.00 2.75
70 71 5.119898 CGACAAGACAAAGAAAGGAGAGATG 59.880 44.000 0.00 0.00 0.00 2.90
71 72 4.759183 ACAAGACAAAGAAAGGAGAGATGC 59.241 41.667 0.00 0.00 0.00 3.91
72 73 4.630644 AGACAAAGAAAGGAGAGATGCA 57.369 40.909 0.00 0.00 0.00 3.96
73 74 4.322567 AGACAAAGAAAGGAGAGATGCAC 58.677 43.478 0.00 0.00 0.00 4.57
74 75 4.041444 AGACAAAGAAAGGAGAGATGCACT 59.959 41.667 0.00 0.00 0.00 4.40
75 76 4.070716 ACAAAGAAAGGAGAGATGCACTG 58.929 43.478 0.00 0.00 0.00 3.66
76 77 3.347077 AAGAAAGGAGAGATGCACTGG 57.653 47.619 0.00 0.00 0.00 4.00
77 78 1.558756 AGAAAGGAGAGATGCACTGGG 59.441 52.381 0.00 0.00 0.00 4.45
78 79 1.280421 GAAAGGAGAGATGCACTGGGT 59.720 52.381 0.00 0.00 0.00 4.51
79 80 2.254152 AAGGAGAGATGCACTGGGTA 57.746 50.000 0.00 0.00 0.00 3.69
80 81 1.490574 AGGAGAGATGCACTGGGTAC 58.509 55.000 0.00 0.00 0.00 3.34
93 94 3.116531 GGTACCTGCAACGCCGAC 61.117 66.667 4.06 0.00 0.00 4.79
95 96 3.672447 TACCTGCAACGCCGACGA 61.672 61.111 0.00 0.00 43.93 4.20
96 97 3.620300 TACCTGCAACGCCGACGAG 62.620 63.158 0.00 0.00 43.93 4.18
110 111 4.845580 CGAGGGCCAGCAGCGAAT 62.846 66.667 6.18 0.00 45.17 3.34
111 112 2.899339 GAGGGCCAGCAGCGAATC 60.899 66.667 6.18 0.00 45.17 2.52
112 113 4.496336 AGGGCCAGCAGCGAATCC 62.496 66.667 6.18 0.00 45.17 3.01
136 137 4.637771 GGTCCACCGGAGATTTGG 57.362 61.111 9.46 4.72 29.39 3.28
137 138 1.988015 GGTCCACCGGAGATTTGGA 59.012 57.895 9.46 7.74 29.39 3.53
138 139 0.107654 GGTCCACCGGAGATTTGGAG 60.108 60.000 9.46 0.00 29.39 3.86
139 140 0.902531 GTCCACCGGAGATTTGGAGA 59.097 55.000 9.46 0.00 29.39 3.71
140 141 1.134670 GTCCACCGGAGATTTGGAGAG 60.135 57.143 9.46 0.00 29.39 3.20
141 142 0.462759 CCACCGGAGATTTGGAGAGC 60.463 60.000 9.46 0.00 0.00 4.09
142 143 0.462759 CACCGGAGATTTGGAGAGCC 60.463 60.000 9.46 0.00 0.00 4.70
143 144 1.227380 CCGGAGATTTGGAGAGCCG 60.227 63.158 0.00 0.00 38.54 5.52
144 145 1.884926 CGGAGATTTGGAGAGCCGC 60.885 63.158 0.00 0.00 36.79 6.53
145 146 1.884926 GGAGATTTGGAGAGCCGCG 60.885 63.158 0.00 0.00 36.79 6.46
146 147 1.884926 GAGATTTGGAGAGCCGCGG 60.885 63.158 24.05 24.05 36.79 6.46
147 148 3.577313 GATTTGGAGAGCCGCGGC 61.577 66.667 42.34 42.34 42.33 6.53
188 189 4.507916 CGAGGGCGGAGGAGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
189 190 2.520741 GAGGGCGGAGGAGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
190 191 4.851214 AGGGCGGAGGAGAGGAGC 62.851 72.222 0.00 0.00 0.00 4.70
194 195 2.904866 CGGAGGAGAGGAGCGGAG 60.905 72.222 0.00 0.00 0.00 4.63
195 196 2.598467 GGAGGAGAGGAGCGGAGA 59.402 66.667 0.00 0.00 0.00 3.71
196 197 1.076632 GGAGGAGAGGAGCGGAGAA 60.077 63.158 0.00 0.00 0.00 2.87
197 198 0.469144 GGAGGAGAGGAGCGGAGAAT 60.469 60.000 0.00 0.00 0.00 2.40
198 199 0.673437 GAGGAGAGGAGCGGAGAATG 59.327 60.000 0.00 0.00 0.00 2.67
199 200 0.758685 AGGAGAGGAGCGGAGAATGG 60.759 60.000 0.00 0.00 0.00 3.16
200 201 1.745264 GAGAGGAGCGGAGAATGGG 59.255 63.158 0.00 0.00 0.00 4.00
201 202 1.753368 GAGAGGAGCGGAGAATGGGG 61.753 65.000 0.00 0.00 0.00 4.96
202 203 2.770048 AGGAGCGGAGAATGGGGG 60.770 66.667 0.00 0.00 0.00 5.40
203 204 2.768344 GGAGCGGAGAATGGGGGA 60.768 66.667 0.00 0.00 0.00 4.81
204 205 2.812619 GGAGCGGAGAATGGGGGAG 61.813 68.421 0.00 0.00 0.00 4.30
205 206 2.770048 AGCGGAGAATGGGGGAGG 60.770 66.667 0.00 0.00 0.00 4.30
206 207 2.768344 GCGGAGAATGGGGGAGGA 60.768 66.667 0.00 0.00 0.00 3.71
207 208 2.375345 GCGGAGAATGGGGGAGGAA 61.375 63.158 0.00 0.00 0.00 3.36
208 209 1.527370 CGGAGAATGGGGGAGGAAC 59.473 63.158 0.00 0.00 0.00 3.62
209 210 1.271840 CGGAGAATGGGGGAGGAACA 61.272 60.000 0.00 0.00 0.00 3.18
210 211 0.548510 GGAGAATGGGGGAGGAACAG 59.451 60.000 0.00 0.00 0.00 3.16
211 212 0.548510 GAGAATGGGGGAGGAACAGG 59.451 60.000 0.00 0.00 0.00 4.00
212 213 0.121197 AGAATGGGGGAGGAACAGGA 59.879 55.000 0.00 0.00 0.00 3.86
213 214 0.548510 GAATGGGGGAGGAACAGGAG 59.451 60.000 0.00 0.00 0.00 3.69
214 215 0.121197 AATGGGGGAGGAACAGGAGA 59.879 55.000 0.00 0.00 0.00 3.71
215 216 0.327000 ATGGGGGAGGAACAGGAGAG 60.327 60.000 0.00 0.00 0.00 3.20
216 217 1.392534 GGGGGAGGAACAGGAGAGA 59.607 63.158 0.00 0.00 0.00 3.10
217 218 0.252742 GGGGGAGGAACAGGAGAGAA 60.253 60.000 0.00 0.00 0.00 2.87
218 219 1.657804 GGGGAGGAACAGGAGAGAAA 58.342 55.000 0.00 0.00 0.00 2.52
219 220 1.557371 GGGGAGGAACAGGAGAGAAAG 59.443 57.143 0.00 0.00 0.00 2.62
220 221 1.557371 GGGAGGAACAGGAGAGAAAGG 59.443 57.143 0.00 0.00 0.00 3.11
221 222 1.557371 GGAGGAACAGGAGAGAAAGGG 59.443 57.143 0.00 0.00 0.00 3.95
222 223 1.557371 GAGGAACAGGAGAGAAAGGGG 59.443 57.143 0.00 0.00 0.00 4.79
223 224 0.621082 GGAACAGGAGAGAAAGGGGG 59.379 60.000 0.00 0.00 0.00 5.40
224 225 1.657804 GAACAGGAGAGAAAGGGGGA 58.342 55.000 0.00 0.00 0.00 4.81
225 226 1.557371 GAACAGGAGAGAAAGGGGGAG 59.443 57.143 0.00 0.00 0.00 4.30
226 227 0.793617 ACAGGAGAGAAAGGGGGAGA 59.206 55.000 0.00 0.00 0.00 3.71
227 228 1.152271 ACAGGAGAGAAAGGGGGAGAA 59.848 52.381 0.00 0.00 0.00 2.87
228 229 2.269940 CAGGAGAGAAAGGGGGAGAAA 58.730 52.381 0.00 0.00 0.00 2.52
229 230 2.238395 CAGGAGAGAAAGGGGGAGAAAG 59.762 54.545 0.00 0.00 0.00 2.62
230 231 2.114506 AGGAGAGAAAGGGGGAGAAAGA 59.885 50.000 0.00 0.00 0.00 2.52
231 232 2.503765 GGAGAGAAAGGGGGAGAAAGAG 59.496 54.545 0.00 0.00 0.00 2.85
232 233 1.912731 AGAGAAAGGGGGAGAAAGAGC 59.087 52.381 0.00 0.00 0.00 4.09
233 234 0.615850 AGAAAGGGGGAGAAAGAGCG 59.384 55.000 0.00 0.00 0.00 5.03
234 235 0.613777 GAAAGGGGGAGAAAGAGCGA 59.386 55.000 0.00 0.00 0.00 4.93
235 236 0.615850 AAAGGGGGAGAAAGAGCGAG 59.384 55.000 0.00 0.00 0.00 5.03
236 237 0.252284 AAGGGGGAGAAAGAGCGAGA 60.252 55.000 0.00 0.00 0.00 4.04
237 238 0.252284 AGGGGGAGAAAGAGCGAGAA 60.252 55.000 0.00 0.00 0.00 2.87
238 239 0.108089 GGGGGAGAAAGAGCGAGAAC 60.108 60.000 0.00 0.00 0.00 3.01
239 240 0.458716 GGGGAGAAAGAGCGAGAACG 60.459 60.000 0.00 0.00 42.93 3.95
240 241 0.458716 GGGAGAAAGAGCGAGAACGG 60.459 60.000 0.00 0.00 40.15 4.44
241 242 1.079317 GGAGAAAGAGCGAGAACGGC 61.079 60.000 0.00 0.00 40.15 5.68
242 243 0.109039 GAGAAAGAGCGAGAACGGCT 60.109 55.000 0.00 0.00 40.15 5.52
243 244 0.109039 AGAAAGAGCGAGAACGGCTC 60.109 55.000 5.69 5.69 40.27 4.70
250 251 2.770259 GAGAACGGCTCGCGTTTC 59.230 61.111 5.77 2.66 33.17 2.78
251 252 3.055905 GAGAACGGCTCGCGTTTCG 62.056 63.158 5.77 10.96 40.15 3.46
252 253 3.101428 GAACGGCTCGCGTTTCGA 61.101 61.111 19.81 0.00 46.29 3.71
259 260 2.246108 TCGCGTTTCGAAAACGGC 59.754 55.556 25.38 20.72 45.36 5.68
260 261 2.793759 CGCGTTTCGAAAACGGCC 60.794 61.111 24.02 13.48 43.25 6.13
261 262 2.793759 GCGTTTCGAAAACGGCCG 60.794 61.111 26.86 26.86 43.25 6.13
262 263 2.793759 CGTTTCGAAAACGGCCGC 60.794 61.111 28.58 7.92 39.73 6.53
263 264 2.427905 GTTTCGAAAACGGCCGCC 60.428 61.111 28.58 11.33 0.00 6.13
264 265 3.662153 TTTCGAAAACGGCCGCCC 61.662 61.111 28.58 10.93 0.00 6.13
265 266 4.931633 TTCGAAAACGGCCGCCCA 62.932 61.111 28.58 0.00 0.00 5.36
273 274 4.944372 CGGCCGCCCACGATCTAC 62.944 72.222 14.67 0.00 43.93 2.59
276 277 4.944372 CCGCCCACGATCTACGCC 62.944 72.222 0.00 0.00 46.94 5.68
277 278 4.201679 CGCCCACGATCTACGCCA 62.202 66.667 0.00 0.00 46.94 5.69
278 279 2.585247 GCCCACGATCTACGCCAC 60.585 66.667 0.00 0.00 46.94 5.01
279 280 2.278596 CCCACGATCTACGCCACG 60.279 66.667 0.00 0.00 46.94 4.94
280 281 2.954868 CCACGATCTACGCCACGC 60.955 66.667 0.00 0.00 46.94 5.34
281 282 2.954868 CACGATCTACGCCACGCC 60.955 66.667 0.00 0.00 46.94 5.68
282 283 4.203076 ACGATCTACGCCACGCCC 62.203 66.667 0.00 0.00 46.94 6.13
287 288 4.501714 CTACGCCACGCCCGCTTA 62.502 66.667 0.00 0.00 0.00 3.09
288 289 4.799824 TACGCCACGCCCGCTTAC 62.800 66.667 0.00 0.00 0.00 2.34
291 292 3.876198 GCCACGCCCGCTTACATG 61.876 66.667 0.00 0.00 0.00 3.21
292 293 2.435938 CCACGCCCGCTTACATGT 60.436 61.111 2.69 2.69 0.00 3.21
293 294 2.749865 CCACGCCCGCTTACATGTG 61.750 63.158 9.11 0.00 0.00 3.21
294 295 2.435938 ACGCCCGCTTACATGTGG 60.436 61.111 9.11 1.13 37.35 4.17
298 299 4.218722 CCGCTTACATGTGGGTCC 57.781 61.111 9.11 0.00 34.20 4.46
299 300 1.298340 CCGCTTACATGTGGGTCCA 59.702 57.895 9.11 0.00 34.20 4.02
300 301 1.024579 CCGCTTACATGTGGGTCCAC 61.025 60.000 9.11 12.89 46.33 4.02
308 309 4.736896 GTGGGTCCACGCTCGTCC 62.737 72.222 4.22 0.00 37.19 4.79
312 313 3.823330 GTCCACGCTCGTCCGGAT 61.823 66.667 7.81 0.00 0.00 4.18
313 314 2.124612 TCCACGCTCGTCCGGATA 60.125 61.111 7.81 0.00 0.00 2.59
314 315 1.750018 TCCACGCTCGTCCGGATAA 60.750 57.895 7.81 0.00 0.00 1.75
315 316 1.299165 CCACGCTCGTCCGGATAAG 60.299 63.158 7.81 9.72 0.00 1.73
316 317 1.299165 CACGCTCGTCCGGATAAGG 60.299 63.158 7.81 5.34 0.00 2.69
317 318 1.452651 ACGCTCGTCCGGATAAGGA 60.453 57.895 7.81 2.12 38.11 3.36
325 326 0.108041 TCCGGATAAGGACAAACCGC 60.108 55.000 0.00 0.00 44.74 5.68
326 327 1.093496 CCGGATAAGGACAAACCGCC 61.093 60.000 0.00 0.00 44.74 6.13
327 328 1.093496 CGGATAAGGACAAACCGCCC 61.093 60.000 0.00 0.00 44.74 6.13
328 329 0.034863 GGATAAGGACAAACCGCCCA 60.035 55.000 0.00 0.00 44.74 5.36
329 330 1.092348 GATAAGGACAAACCGCCCAC 58.908 55.000 0.00 0.00 44.74 4.61
330 331 0.675522 ATAAGGACAAACCGCCCACG 60.676 55.000 0.00 0.00 44.74 4.94
331 332 1.756408 TAAGGACAAACCGCCCACGA 61.756 55.000 0.00 0.00 43.93 4.35
332 333 3.351416 GGACAAACCGCCCACGAC 61.351 66.667 0.00 0.00 43.93 4.34
333 334 3.351416 GACAAACCGCCCACGACC 61.351 66.667 0.00 0.00 43.93 4.79
352 353 3.980989 CGTGGTTGGACGGACCGA 61.981 66.667 23.38 0.00 42.61 4.69
363 364 4.736896 GGACCGACCAGGCGACAC 62.737 72.222 0.00 0.00 46.52 3.67
364 365 4.736896 GACCGACCAGGCGACACC 62.737 72.222 0.00 0.00 46.52 4.16
404 405 4.210304 GCAAGCGATCGTGCGGTC 62.210 66.667 17.81 0.00 41.62 4.79
405 406 3.902063 CAAGCGATCGTGCGGTCG 61.902 66.667 20.91 20.91 41.62 4.79
429 430 3.311110 GGCCGCCCGGATCATCTA 61.311 66.667 11.48 0.00 37.50 1.98
430 431 2.660064 GGCCGCCCGGATCATCTAT 61.660 63.158 11.48 0.00 37.50 1.98
431 432 1.296715 GCCGCCCGGATCATCTATT 59.703 57.895 11.48 0.00 37.50 1.73
432 433 0.321653 GCCGCCCGGATCATCTATTT 60.322 55.000 11.48 0.00 37.50 1.40
433 434 1.442769 CCGCCCGGATCATCTATTTG 58.557 55.000 0.73 0.00 37.50 2.32
434 435 1.442769 CGCCCGGATCATCTATTTGG 58.557 55.000 0.73 0.00 0.00 3.28
435 436 1.270839 CGCCCGGATCATCTATTTGGT 60.271 52.381 0.73 0.00 0.00 3.67
436 437 2.154462 GCCCGGATCATCTATTTGGTG 58.846 52.381 0.73 0.00 0.00 4.17
437 438 2.154462 CCCGGATCATCTATTTGGTGC 58.846 52.381 0.73 0.00 0.00 5.01
438 439 1.800586 CCGGATCATCTATTTGGTGCG 59.199 52.381 0.00 0.00 40.72 5.34
439 440 1.195448 CGGATCATCTATTTGGTGCGC 59.805 52.381 0.00 0.00 34.81 6.09
440 441 1.195448 GGATCATCTATTTGGTGCGCG 59.805 52.381 0.00 0.00 0.00 6.86
441 442 1.195448 GATCATCTATTTGGTGCGCGG 59.805 52.381 8.83 0.00 0.00 6.46
442 443 1.009675 CATCTATTTGGTGCGCGGC 60.010 57.895 8.83 0.00 0.00 6.53
443 444 2.186826 ATCTATTTGGTGCGCGGCC 61.187 57.895 8.83 13.13 0.00 6.13
444 445 2.884997 ATCTATTTGGTGCGCGGCCA 62.885 55.000 17.89 17.89 0.00 5.36
445 446 3.395470 CTATTTGGTGCGCGGCCAC 62.395 63.158 20.87 8.44 35.46 5.01
446 447 3.910914 TATTTGGTGCGCGGCCACT 62.911 57.895 20.87 14.27 35.46 4.00
450 451 4.279043 GGTGCGCGGCCACTTTTT 62.279 61.111 8.83 0.00 36.03 1.94
451 452 2.640421 GTGCGCGGCCACTTTTTA 59.360 55.556 8.83 0.00 33.02 1.52
452 453 1.442017 GTGCGCGGCCACTTTTTAG 60.442 57.895 8.83 0.00 33.02 1.85
453 454 1.598407 TGCGCGGCCACTTTTTAGA 60.598 52.632 8.83 0.00 0.00 2.10
454 455 0.958382 TGCGCGGCCACTTTTTAGAT 60.958 50.000 8.83 0.00 0.00 1.98
455 456 0.170339 GCGCGGCCACTTTTTAGATT 59.830 50.000 8.83 0.00 0.00 2.40
456 457 1.402325 GCGCGGCCACTTTTTAGATTT 60.402 47.619 8.83 0.00 0.00 2.17
457 458 2.924880 GCGCGGCCACTTTTTAGATTTT 60.925 45.455 8.83 0.00 0.00 1.82
458 459 3.671164 GCGCGGCCACTTTTTAGATTTTA 60.671 43.478 8.83 0.00 0.00 1.52
459 460 4.095610 CGCGGCCACTTTTTAGATTTTAG 58.904 43.478 2.24 0.00 0.00 1.85
460 461 4.421058 GCGGCCACTTTTTAGATTTTAGG 58.579 43.478 2.24 0.00 0.00 2.69
461 462 4.421058 CGGCCACTTTTTAGATTTTAGGC 58.579 43.478 2.24 0.00 38.84 3.93
462 463 4.157840 CGGCCACTTTTTAGATTTTAGGCT 59.842 41.667 2.24 0.00 39.48 4.58
463 464 5.410924 GGCCACTTTTTAGATTTTAGGCTG 58.589 41.667 0.00 0.00 39.48 4.85
466 467 6.929049 GCCACTTTTTAGATTTTAGGCTGTTT 59.071 34.615 0.00 0.00 36.72 2.83
518 522 0.615331 ATGTGTTGGCATCTCCTCGT 59.385 50.000 0.00 0.00 35.26 4.18
534 538 2.352960 CCTCGTGCTTCTCAAATAAGGC 59.647 50.000 0.00 0.00 0.00 4.35
535 539 3.265791 CTCGTGCTTCTCAAATAAGGCT 58.734 45.455 0.00 0.00 0.00 4.58
539 543 3.062774 GTGCTTCTCAAATAAGGCTCGAC 59.937 47.826 0.00 0.00 0.00 4.20
588 592 1.964608 CTCCGATCTCTTGCAGCCCA 61.965 60.000 0.00 0.00 0.00 5.36
618 623 1.134694 GATCAGAAAACCGCGTGCC 59.865 57.895 4.92 0.00 0.00 5.01
619 624 2.563086 GATCAGAAAACCGCGTGCCG 62.563 60.000 4.92 0.00 0.00 5.69
620 625 3.645975 CAGAAAACCGCGTGCCGT 61.646 61.111 4.92 0.00 34.38 5.68
621 626 2.029369 AGAAAACCGCGTGCCGTA 59.971 55.556 4.92 0.00 34.38 4.02
622 627 2.171701 GAAAACCGCGTGCCGTAC 59.828 61.111 4.92 0.00 34.38 3.67
710 719 1.595382 AAGCTACGCGATGCCATCC 60.595 57.895 15.93 0.00 0.00 3.51
720 729 2.475371 GATGCCATCCCCCGATCCAG 62.475 65.000 0.00 0.00 0.00 3.86
911 942 1.166129 CGACGACTTGAGGGAGAAGA 58.834 55.000 0.00 0.00 0.00 2.87
923 954 1.134936 GGGAGAAGACGAAGAGGAAGC 60.135 57.143 0.00 0.00 0.00 3.86
924 955 1.134936 GGAGAAGACGAAGAGGAAGCC 60.135 57.143 0.00 0.00 0.00 4.35
926 957 1.273886 AGAAGACGAAGAGGAAGCCAC 59.726 52.381 0.00 0.00 0.00 5.01
927 958 1.273886 GAAGACGAAGAGGAAGCCACT 59.726 52.381 0.00 0.00 0.00 4.00
929 960 0.108567 GACGAAGAGGAAGCCACTCC 60.109 60.000 0.00 0.00 35.58 3.85
933 968 0.836400 AAGAGGAAGCCACTCCCGAA 60.836 55.000 0.00 0.00 35.95 4.30
936 971 0.836400 AGGAAGCCACTCCCGAAAGA 60.836 55.000 0.00 0.00 35.95 2.52
965 1000 2.606065 GGAATTTTGTTGTTCGTCCGGG 60.606 50.000 0.00 0.00 0.00 5.73
985 1020 3.164269 ATTCCCAGCGATCGGCCT 61.164 61.111 18.30 3.01 45.17 5.19
989 1024 2.279069 CCCAGCGATCGGCCTATCT 61.279 63.158 18.30 0.54 45.17 1.98
993 1028 2.878429 CGATCGGCCTATCTCCGG 59.122 66.667 14.80 0.00 46.43 5.14
1065 1100 2.728817 GAGATGAGGGTACGGCGG 59.271 66.667 13.24 0.00 0.00 6.13
1076 1111 2.345760 TACGGCGGTCTTCCCTGTC 61.346 63.158 13.24 0.00 0.00 3.51
1081 1116 1.112113 GCGGTCTTCCCTGTCAGATA 58.888 55.000 0.00 0.00 0.00 1.98
1082 1117 1.067821 GCGGTCTTCCCTGTCAGATAG 59.932 57.143 0.00 0.00 0.00 2.08
1085 1120 2.962421 GGTCTTCCCTGTCAGATAGGAG 59.038 54.545 14.81 5.29 37.52 3.69
1087 1122 4.479158 GTCTTCCCTGTCAGATAGGAGAT 58.521 47.826 14.81 0.00 37.52 2.75
1092 1132 2.556189 CCTGTCAGATAGGAGATCACCG 59.444 54.545 7.46 0.00 37.52 4.94
1101 1141 1.687297 GGAGATCACCGTCCCCCTTC 61.687 65.000 0.00 0.00 0.00 3.46
1138 1185 3.564027 GCCCGTGCTGTATCGTGC 61.564 66.667 0.00 0.00 33.53 5.34
1157 1204 1.335964 GCTGGTTCTTTTTCTTCGGGC 60.336 52.381 0.00 0.00 0.00 6.13
1167 1214 6.394809 TCTTTTTCTTCGGGCCATTTAATTC 58.605 36.000 4.39 0.00 0.00 2.17
1168 1215 5.730296 TTTTCTTCGGGCCATTTAATTCA 57.270 34.783 4.39 0.00 0.00 2.57
1170 1217 4.916983 TCTTCGGGCCATTTAATTCATG 57.083 40.909 4.39 0.00 0.00 3.07
1172 1219 4.709397 TCTTCGGGCCATTTAATTCATGTT 59.291 37.500 4.39 0.00 0.00 2.71
1175 1222 4.950475 TCGGGCCATTTAATTCATGTTGTA 59.050 37.500 4.39 0.00 0.00 2.41
1178 1225 6.627065 CGGGCCATTTAATTCATGTTGTACTT 60.627 38.462 4.39 0.00 0.00 2.24
1390 1474 2.747855 GGGGAGGCAAGCGAGTTG 60.748 66.667 0.00 0.00 39.41 3.16
1433 1517 7.174946 AGGAATAAATCAACCTGCCGTATATTG 59.825 37.037 0.00 0.00 0.00 1.90
1444 1528 2.033151 GCCGTATATTGTCTTGCGGAAC 60.033 50.000 4.91 0.00 41.45 3.62
1496 1582 3.834813 TGGTTAGCTGAACACTCTGATCT 59.165 43.478 0.00 0.00 40.09 2.75
1497 1583 5.016831 TGGTTAGCTGAACACTCTGATCTA 58.983 41.667 0.00 0.00 40.09 1.98
1498 1584 5.105716 TGGTTAGCTGAACACTCTGATCTAC 60.106 44.000 0.00 0.00 40.09 2.59
1499 1585 5.126384 GGTTAGCTGAACACTCTGATCTACT 59.874 44.000 0.00 0.00 40.09 2.57
1500 1586 4.981806 AGCTGAACACTCTGATCTACTC 57.018 45.455 0.00 0.00 0.00 2.59
1501 1587 3.699038 AGCTGAACACTCTGATCTACTCC 59.301 47.826 0.00 0.00 0.00 3.85
1502 1588 3.181480 GCTGAACACTCTGATCTACTCCC 60.181 52.174 0.00 0.00 0.00 4.30
1503 1589 4.277476 CTGAACACTCTGATCTACTCCCT 58.723 47.826 0.00 0.00 0.00 4.20
1504 1590 4.274147 TGAACACTCTGATCTACTCCCTC 58.726 47.826 0.00 0.00 0.00 4.30
1505 1591 3.306472 ACACTCTGATCTACTCCCTCC 57.694 52.381 0.00 0.00 0.00 4.30
1506 1592 2.226330 CACTCTGATCTACTCCCTCCG 58.774 57.143 0.00 0.00 0.00 4.63
1507 1593 1.847737 ACTCTGATCTACTCCCTCCGT 59.152 52.381 0.00 0.00 0.00 4.69
1508 1594 2.242708 ACTCTGATCTACTCCCTCCGTT 59.757 50.000 0.00 0.00 0.00 4.44
1509 1595 2.882137 CTCTGATCTACTCCCTCCGTTC 59.118 54.545 0.00 0.00 0.00 3.95
1510 1596 1.957877 CTGATCTACTCCCTCCGTTCC 59.042 57.143 0.00 0.00 0.00 3.62
1511 1597 1.286849 TGATCTACTCCCTCCGTTCCA 59.713 52.381 0.00 0.00 0.00 3.53
1512 1598 2.291996 TGATCTACTCCCTCCGTTCCAA 60.292 50.000 0.00 0.00 0.00 3.53
1513 1599 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
1514 1600 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
1515 1601 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
1516 1602 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
1517 1603 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1518 1604 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1519 1605 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1520 1606 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1521 1607 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1522 1608 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1523 1609 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1524 1610 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1525 1611 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1526 1612 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1527 1613 4.096382 CCGTTCCAAAATAGATGACCCAAG 59.904 45.833 0.00 0.00 0.00 3.61
1528 1614 4.700213 CGTTCCAAAATAGATGACCCAAGT 59.300 41.667 0.00 0.00 0.00 3.16
1529 1615 5.183140 CGTTCCAAAATAGATGACCCAAGTT 59.817 40.000 0.00 0.00 0.00 2.66
1530 1616 6.294508 CGTTCCAAAATAGATGACCCAAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
1531 1617 7.094549 CGTTCCAAAATAGATGACCCAAGTTTA 60.095 37.037 0.00 0.00 0.00 2.01
1532 1618 7.938140 TCCAAAATAGATGACCCAAGTTTAG 57.062 36.000 0.00 0.00 0.00 1.85
1533 1619 7.466804 TCCAAAATAGATGACCCAAGTTTAGT 58.533 34.615 0.00 0.00 0.00 2.24
1534 1620 8.607713 TCCAAAATAGATGACCCAAGTTTAGTA 58.392 33.333 0.00 0.00 0.00 1.82
1535 1621 9.408648 CCAAAATAGATGACCCAAGTTTAGTAT 57.591 33.333 0.00 0.00 0.00 2.12
1542 1628 9.449719 AGATGACCCAAGTTTAGTATAAAGTTG 57.550 33.333 17.24 17.24 39.21 3.16
1550 1636 9.449719 CAAGTTTAGTATAAAGTTGGGTCATCT 57.550 33.333 16.72 0.00 37.08 2.90
1557 1643 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
1558 1644 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
1559 1645 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
1560 1646 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1561 1647 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1562 1648 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1563 1649 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1564 1650 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1565 1651 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1566 1652 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1567 1653 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1568 1654 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1608 1700 5.438761 TTTTTCTTTCTGGTTAGCTGAGC 57.561 39.130 0.00 0.00 0.00 4.26
1609 1701 3.769739 TTCTTTCTGGTTAGCTGAGCA 57.230 42.857 7.39 10.20 0.00 4.26
1610 1702 3.045601 TCTTTCTGGTTAGCTGAGCAC 57.954 47.619 7.39 0.00 0.00 4.40
1611 1703 2.368548 TCTTTCTGGTTAGCTGAGCACA 59.631 45.455 7.39 0.00 0.00 4.57
1691 1783 2.421424 CAGATTGGCCTTAACAGACAGC 59.579 50.000 3.32 0.00 0.00 4.40
1710 1802 8.443160 CAGACAGCGTTCTTAAATCTTTTATGA 58.557 33.333 0.00 0.00 0.00 2.15
1766 1866 6.710295 TGATGTTGCTTTTCTGCTCTTACTAA 59.290 34.615 0.00 0.00 0.00 2.24
2043 2160 8.641498 AATCCAATTTATGTTCTGTCTCTGTT 57.359 30.769 0.00 0.00 0.00 3.16
2111 2228 9.912634 TTCTATGTTGAAATCTTGATTTTGGTC 57.087 29.630 9.58 0.00 0.00 4.02
2112 2229 8.522830 TCTATGTTGAAATCTTGATTTTGGTCC 58.477 33.333 9.58 0.00 0.00 4.46
2113 2230 5.852827 TGTTGAAATCTTGATTTTGGTCCC 58.147 37.500 9.58 0.00 0.00 4.46
2114 2231 5.602145 TGTTGAAATCTTGATTTTGGTCCCT 59.398 36.000 9.58 0.00 0.00 4.20
2115 2232 5.982890 TGAAATCTTGATTTTGGTCCCTC 57.017 39.130 9.58 0.00 0.00 4.30
2116 2233 4.458989 TGAAATCTTGATTTTGGTCCCTCG 59.541 41.667 9.58 0.00 0.00 4.63
2117 2234 1.821216 TCTTGATTTTGGTCCCTCGC 58.179 50.000 0.00 0.00 0.00 5.03
2118 2235 1.073125 TCTTGATTTTGGTCCCTCGCA 59.927 47.619 0.00 0.00 0.00 5.10
2119 2236 1.885887 CTTGATTTTGGTCCCTCGCAA 59.114 47.619 0.00 0.00 0.00 4.85
2120 2237 1.988293 TGATTTTGGTCCCTCGCAAA 58.012 45.000 0.00 0.00 0.00 3.68
2121 2238 2.311463 TGATTTTGGTCCCTCGCAAAA 58.689 42.857 0.00 0.00 33.92 2.44
2122 2239 2.695666 TGATTTTGGTCCCTCGCAAAAA 59.304 40.909 0.00 0.00 33.50 1.94
2123 2240 2.588027 TTTTGGTCCCTCGCAAAAAC 57.412 45.000 0.00 0.00 0.00 2.43
2124 2241 1.475403 TTTGGTCCCTCGCAAAAACA 58.525 45.000 0.00 0.00 0.00 2.83
2125 2242 1.475403 TTGGTCCCTCGCAAAAACAA 58.525 45.000 0.00 0.00 0.00 2.83
2126 2243 1.475403 TGGTCCCTCGCAAAAACAAA 58.525 45.000 0.00 0.00 0.00 2.83
2127 2244 1.825474 TGGTCCCTCGCAAAAACAAAA 59.175 42.857 0.00 0.00 0.00 2.44
2128 2245 2.233922 TGGTCCCTCGCAAAAACAAAAA 59.766 40.909 0.00 0.00 0.00 1.94
2129 2246 2.605818 GGTCCCTCGCAAAAACAAAAAC 59.394 45.455 0.00 0.00 0.00 2.43
2130 2247 3.254892 GTCCCTCGCAAAAACAAAAACA 58.745 40.909 0.00 0.00 0.00 2.83
2131 2248 3.680458 GTCCCTCGCAAAAACAAAAACAA 59.320 39.130 0.00 0.00 0.00 2.83
2132 2249 4.152580 GTCCCTCGCAAAAACAAAAACAAA 59.847 37.500 0.00 0.00 0.00 2.83
2133 2250 4.755123 TCCCTCGCAAAAACAAAAACAAAA 59.245 33.333 0.00 0.00 0.00 2.44
2134 2251 5.238650 TCCCTCGCAAAAACAAAAACAAAAA 59.761 32.000 0.00 0.00 0.00 1.94
2135 2252 6.072452 TCCCTCGCAAAAACAAAAACAAAAAT 60.072 30.769 0.00 0.00 0.00 1.82
2136 2253 6.250315 CCCTCGCAAAAACAAAAACAAAAATC 59.750 34.615 0.00 0.00 0.00 2.17
2137 2254 7.020602 CCTCGCAAAAACAAAAACAAAAATCT 58.979 30.769 0.00 0.00 0.00 2.40
2138 2255 7.536964 CCTCGCAAAAACAAAAACAAAAATCTT 59.463 29.630 0.00 0.00 0.00 2.40
2139 2256 8.208855 TCGCAAAAACAAAAACAAAAATCTTG 57.791 26.923 0.00 0.00 0.00 3.02
2140 2257 8.070171 TCGCAAAAACAAAAACAAAAATCTTGA 58.930 25.926 0.00 0.00 0.00 3.02
2141 2258 8.848528 CGCAAAAACAAAAACAAAAATCTTGAT 58.151 25.926 0.00 0.00 0.00 2.57
2151 2268 7.778470 AACAAAAATCTTGATTTTGGCGTTA 57.222 28.000 18.37 0.00 46.81 3.18
2175 2292 5.859205 ATTTCTTGTGGCCCATCTATTTC 57.141 39.130 0.00 0.00 0.00 2.17
2299 2419 6.882610 ATGAACACATTTAGTTCTTCAGCA 57.117 33.333 7.47 0.00 44.30 4.41
2329 2449 9.442047 AGTTCAATTTCCTACATCTTGTTAGAG 57.558 33.333 0.00 0.00 32.92 2.43
2350 2470 2.096019 GCTGGAGAAAGCTTTCAGTTCG 60.096 50.000 34.39 21.03 40.20 3.95
2405 2525 2.158842 GCTGACTAGTACTCCCTCCGTA 60.159 54.545 0.00 0.00 0.00 4.02
2542 2662 8.664798 CAGAACATCTTATATTTGTGAACGGAA 58.335 33.333 0.00 0.00 0.00 4.30
2569 2689 4.993705 AGAAACATAAAGGGACCACTCA 57.006 40.909 0.00 0.00 0.00 3.41
2663 2783 3.753272 GCCAGCAGATGTTCTCACTTTTA 59.247 43.478 0.00 0.00 0.00 1.52
2969 3205 7.363431 CCTTCATTCAAAACCTTAGTCTTCAC 58.637 38.462 0.00 0.00 0.00 3.18
3037 3273 9.574458 CCTCATCCGTATGAATAGTAATGTAAG 57.426 37.037 0.00 0.00 41.57 2.34
3110 3346 3.069586 CACTCAGTTGAGGTGGACTAACA 59.930 47.826 13.30 0.00 46.13 2.41
3308 3544 6.934083 TGTAAAGTGTCATAACTGCTCATTGA 59.066 34.615 0.00 0.00 0.00 2.57
3313 3549 5.583854 GTGTCATAACTGCTCATTGATGTCT 59.416 40.000 0.00 0.00 0.00 3.41
3314 3550 6.093219 GTGTCATAACTGCTCATTGATGTCTT 59.907 38.462 0.00 0.00 0.00 3.01
3315 3551 7.278646 GTGTCATAACTGCTCATTGATGTCTTA 59.721 37.037 0.00 0.00 0.00 2.10
3464 3700 6.380095 AACTTGACCACTATTTTAAACGCA 57.620 33.333 0.00 0.00 0.00 5.24
3465 3701 6.380095 ACTTGACCACTATTTTAAACGCAA 57.620 33.333 0.00 0.00 0.00 4.85
3483 3719 7.684062 AACGCAAACATGCTTGAATATATTC 57.316 32.000 17.09 17.09 37.31 1.75
3484 3720 7.031226 ACGCAAACATGCTTGAATATATTCT 57.969 32.000 22.77 3.13 37.67 2.40
3520 3757 2.722094 TGACCGCCATTTTTAGCAGAT 58.278 42.857 0.00 0.00 0.00 2.90
3961 4215 8.621286 TGACACCAGAAAGAAAGAAAAAGATAC 58.379 33.333 0.00 0.00 0.00 2.24
3987 4241 3.780294 TGAGGAACACCTTATAGCCACAT 59.220 43.478 0.00 0.00 33.73 3.21
4045 4299 3.067320 GCTGAAGAAAAGACCTTGCTTGT 59.933 43.478 3.80 0.00 0.00 3.16
4068 4322 3.689649 GTCTGACCGCATCAAATTTACCT 59.310 43.478 0.00 0.00 36.69 3.08
4182 4436 5.627499 TGCTTTTGTTCACATATGAGGAC 57.373 39.130 10.38 7.21 35.83 3.85
4563 4913 2.418628 TGCTTTCTATAAACGCAGGCAC 59.581 45.455 0.00 0.00 30.46 5.01
4584 4934 5.288952 GCACGTATGGTCTTCTCTCTAAAAC 59.711 44.000 0.00 0.00 0.00 2.43
4645 4995 2.101640 AAAGGGTGGATGCCTTTGTT 57.898 45.000 0.00 0.00 33.29 2.83
4652 5002 1.202627 TGGATGCCTTTGTTGGTTTGC 60.203 47.619 0.00 0.00 0.00 3.68
4654 5004 2.298729 GGATGCCTTTGTTGGTTTGCTA 59.701 45.455 0.00 0.00 0.00 3.49
4655 5005 3.055891 GGATGCCTTTGTTGGTTTGCTAT 60.056 43.478 0.00 0.00 0.00 2.97
4666 5016 4.127566 TGGTTTGCTATAGGAACGTACC 57.872 45.455 15.74 15.74 0.00 3.34
4689 5039 4.564782 TTCTTCTCTGAATCATGCACCT 57.435 40.909 0.00 0.00 0.00 4.00
4708 5059 8.925161 TGCACCTAAATTTCATATTAGCAAAC 57.075 30.769 0.00 0.00 0.00 2.93
4720 5071 9.672086 TTCATATTAGCAAACACTGTTACAAAC 57.328 29.630 0.00 0.00 0.00 2.93
4721 5072 9.062524 TCATATTAGCAAACACTGTTACAAACT 57.937 29.630 0.00 0.00 0.00 2.66
4722 5073 9.117145 CATATTAGCAAACACTGTTACAAACTG 57.883 33.333 0.00 0.00 36.53 3.16
4727 5078 5.861787 GCAAACACTGTTACAAACTGAAACT 59.138 36.000 0.00 0.00 34.78 2.66
4754 5105 3.202829 TCTGGGTTTGTCAGTTGTACC 57.797 47.619 0.00 0.00 34.15 3.34
4757 5108 1.301423 GGTTTGTCAGTTGTACCGCA 58.699 50.000 0.00 0.00 0.00 5.69
4795 5146 9.982291 TTATTTTCGTATTTTCTACATGTGAGC 57.018 29.630 9.11 0.00 0.00 4.26
4825 5176 1.001974 GGCATTCCACAAAGGGGAAAC 59.998 52.381 4.64 0.70 46.76 2.78
4827 5178 3.161866 GCATTCCACAAAGGGGAAACTA 58.838 45.455 4.64 0.00 46.76 2.24
4839 5190 7.039714 ACAAAGGGGAAACTAGATTGAACAATC 60.040 37.037 16.71 16.71 45.66 2.67
4851 5202 3.907894 TGAACAATCTTTACCGGTTGC 57.092 42.857 15.04 0.00 0.00 4.17
4852 5203 3.215151 TGAACAATCTTTACCGGTTGCA 58.785 40.909 15.04 0.00 0.00 4.08
4853 5204 3.003897 TGAACAATCTTTACCGGTTGCAC 59.996 43.478 15.04 2.11 0.00 4.57
4854 5205 2.858745 ACAATCTTTACCGGTTGCACT 58.141 42.857 15.04 0.00 0.00 4.40
4855 5206 2.552315 ACAATCTTTACCGGTTGCACTG 59.448 45.455 15.04 6.57 0.00 3.66
4861 5212 4.734652 CCGGTTGCACTGGGTTAT 57.265 55.556 0.00 0.00 41.01 1.89
4862 5213 2.179764 CCGGTTGCACTGGGTTATG 58.820 57.895 0.00 0.00 41.01 1.90
4863 5214 1.312371 CCGGTTGCACTGGGTTATGG 61.312 60.000 0.00 0.00 41.01 2.74
4864 5215 1.890174 GGTTGCACTGGGTTATGGC 59.110 57.895 0.00 0.00 0.00 4.40
4865 5216 0.897863 GGTTGCACTGGGTTATGGCA 60.898 55.000 0.00 0.00 0.00 4.92
4866 5217 1.185315 GTTGCACTGGGTTATGGCAT 58.815 50.000 4.88 4.88 34.03 4.40
4867 5218 1.134946 GTTGCACTGGGTTATGGCATC 59.865 52.381 1.65 0.00 34.03 3.91
4868 5219 0.625316 TGCACTGGGTTATGGCATCT 59.375 50.000 1.65 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.459237 TAGGTCGTCTCGAGGTCGTC 60.459 60.000 22.46 18.65 36.23 4.20
18 19 0.459934 CTAGGTCGTCTCGAGGTCGT 60.460 60.000 22.46 11.75 36.23 4.34
19 20 0.179116 TCTAGGTCGTCTCGAGGTCG 60.179 60.000 13.56 17.14 36.23 4.79
20 21 1.289276 GTCTAGGTCGTCTCGAGGTC 58.711 60.000 13.56 5.55 36.23 3.85
21 22 0.107752 GGTCTAGGTCGTCTCGAGGT 60.108 60.000 13.56 0.00 36.23 3.85
22 23 0.814812 GGGTCTAGGTCGTCTCGAGG 60.815 65.000 13.56 0.00 36.23 4.63
23 24 0.814812 GGGGTCTAGGTCGTCTCGAG 60.815 65.000 5.93 5.93 36.23 4.04
24 25 1.222936 GGGGTCTAGGTCGTCTCGA 59.777 63.158 0.00 0.00 0.00 4.04
25 26 1.823041 GGGGGTCTAGGTCGTCTCG 60.823 68.421 0.00 0.00 0.00 4.04
26 27 0.752376 CTGGGGGTCTAGGTCGTCTC 60.752 65.000 0.00 0.00 0.00 3.36
27 28 1.306970 CTGGGGGTCTAGGTCGTCT 59.693 63.158 0.00 0.00 0.00 4.18
28 29 2.424733 GCTGGGGGTCTAGGTCGTC 61.425 68.421 0.00 0.00 0.00 4.20
29 30 2.363925 GCTGGGGGTCTAGGTCGT 60.364 66.667 0.00 0.00 0.00 4.34
30 31 3.528370 CGCTGGGGGTCTAGGTCG 61.528 72.222 0.00 0.00 0.00 4.79
31 32 2.043248 TCGCTGGGGGTCTAGGTC 60.043 66.667 0.00 0.00 0.00 3.85
32 33 2.363925 GTCGCTGGGGGTCTAGGT 60.364 66.667 0.00 0.00 0.00 3.08
33 34 1.961180 CTTGTCGCTGGGGGTCTAGG 61.961 65.000 0.00 0.00 0.00 3.02
34 35 0.970937 TCTTGTCGCTGGGGGTCTAG 60.971 60.000 0.00 0.00 0.00 2.43
35 36 1.077805 TCTTGTCGCTGGGGGTCTA 59.922 57.895 0.00 0.00 0.00 2.59
36 37 2.203788 TCTTGTCGCTGGGGGTCT 60.204 61.111 0.00 0.00 0.00 3.85
37 38 2.047179 GTCTTGTCGCTGGGGGTC 60.047 66.667 0.00 0.00 0.00 4.46
38 39 1.990160 TTTGTCTTGTCGCTGGGGGT 61.990 55.000 0.00 0.00 0.00 4.95
39 40 1.228124 TTTGTCTTGTCGCTGGGGG 60.228 57.895 0.00 0.00 0.00 5.40
40 41 0.250295 TCTTTGTCTTGTCGCTGGGG 60.250 55.000 0.00 0.00 0.00 4.96
41 42 1.593196 TTCTTTGTCTTGTCGCTGGG 58.407 50.000 0.00 0.00 0.00 4.45
42 43 2.031682 CCTTTCTTTGTCTTGTCGCTGG 60.032 50.000 0.00 0.00 0.00 4.85
43 44 2.872245 TCCTTTCTTTGTCTTGTCGCTG 59.128 45.455 0.00 0.00 0.00 5.18
44 45 3.134458 CTCCTTTCTTTGTCTTGTCGCT 58.866 45.455 0.00 0.00 0.00 4.93
45 46 3.131396 TCTCCTTTCTTTGTCTTGTCGC 58.869 45.455 0.00 0.00 0.00 5.19
46 47 4.621991 TCTCTCCTTTCTTTGTCTTGTCG 58.378 43.478 0.00 0.00 0.00 4.35
47 48 5.106752 GCATCTCTCCTTTCTTTGTCTTGTC 60.107 44.000 0.00 0.00 0.00 3.18
48 49 4.759183 GCATCTCTCCTTTCTTTGTCTTGT 59.241 41.667 0.00 0.00 0.00 3.16
49 50 4.758674 TGCATCTCTCCTTTCTTTGTCTTG 59.241 41.667 0.00 0.00 0.00 3.02
50 51 4.759183 GTGCATCTCTCCTTTCTTTGTCTT 59.241 41.667 0.00 0.00 0.00 3.01
51 52 4.041444 AGTGCATCTCTCCTTTCTTTGTCT 59.959 41.667 0.00 0.00 0.00 3.41
52 53 4.153835 CAGTGCATCTCTCCTTTCTTTGTC 59.846 45.833 0.00 0.00 0.00 3.18
53 54 4.070716 CAGTGCATCTCTCCTTTCTTTGT 58.929 43.478 0.00 0.00 0.00 2.83
54 55 3.439476 CCAGTGCATCTCTCCTTTCTTTG 59.561 47.826 0.00 0.00 0.00 2.77
55 56 3.560882 CCCAGTGCATCTCTCCTTTCTTT 60.561 47.826 0.00 0.00 0.00 2.52
56 57 2.026449 CCCAGTGCATCTCTCCTTTCTT 60.026 50.000 0.00 0.00 0.00 2.52
57 58 1.558756 CCCAGTGCATCTCTCCTTTCT 59.441 52.381 0.00 0.00 0.00 2.52
58 59 1.280421 ACCCAGTGCATCTCTCCTTTC 59.720 52.381 0.00 0.00 0.00 2.62
59 60 1.366319 ACCCAGTGCATCTCTCCTTT 58.634 50.000 0.00 0.00 0.00 3.11
60 61 1.834263 GTACCCAGTGCATCTCTCCTT 59.166 52.381 0.00 0.00 0.00 3.36
61 62 1.490574 GTACCCAGTGCATCTCTCCT 58.509 55.000 0.00 0.00 0.00 3.69
62 63 0.466124 GGTACCCAGTGCATCTCTCC 59.534 60.000 0.00 0.00 0.00 3.71
63 64 1.137872 CAGGTACCCAGTGCATCTCTC 59.862 57.143 8.74 0.00 0.00 3.20
64 65 1.198713 CAGGTACCCAGTGCATCTCT 58.801 55.000 8.74 0.00 0.00 3.10
65 66 0.462759 GCAGGTACCCAGTGCATCTC 60.463 60.000 17.35 0.00 37.16 2.75
66 67 1.200760 TGCAGGTACCCAGTGCATCT 61.201 55.000 20.20 0.00 42.20 2.90
67 68 0.322456 TTGCAGGTACCCAGTGCATC 60.322 55.000 23.47 0.00 46.18 3.91
68 69 0.609131 GTTGCAGGTACCCAGTGCAT 60.609 55.000 23.47 0.00 46.18 3.96
69 70 1.228124 GTTGCAGGTACCCAGTGCA 60.228 57.895 20.20 20.20 45.30 4.57
70 71 2.325082 CGTTGCAGGTACCCAGTGC 61.325 63.158 15.83 15.83 37.73 4.40
71 72 2.325082 GCGTTGCAGGTACCCAGTG 61.325 63.158 8.74 1.17 0.00 3.66
72 73 2.032071 GCGTTGCAGGTACCCAGT 59.968 61.111 8.74 0.00 0.00 4.00
73 74 2.746277 GGCGTTGCAGGTACCCAG 60.746 66.667 8.74 2.51 0.00 4.45
74 75 4.690719 CGGCGTTGCAGGTACCCA 62.691 66.667 8.74 0.00 0.00 4.51
75 76 4.382320 TCGGCGTTGCAGGTACCC 62.382 66.667 8.74 0.00 0.00 3.69
76 77 3.116531 GTCGGCGTTGCAGGTACC 61.117 66.667 6.85 2.73 0.00 3.34
77 78 3.475774 CGTCGGCGTTGCAGGTAC 61.476 66.667 6.85 0.00 0.00 3.34
78 79 3.620300 CTCGTCGGCGTTGCAGGTA 62.620 63.158 10.18 0.00 39.49 3.08
93 94 4.845580 ATTCGCTGCTGGCCCTCG 62.846 66.667 0.00 0.00 37.74 4.63
94 95 2.899339 GATTCGCTGCTGGCCCTC 60.899 66.667 0.00 0.00 37.74 4.30
95 96 4.496336 GGATTCGCTGCTGGCCCT 62.496 66.667 0.00 0.00 37.74 5.19
119 120 0.107654 CTCCAAATCTCCGGTGGACC 60.108 60.000 6.64 0.00 36.51 4.46
120 121 0.902531 TCTCCAAATCTCCGGTGGAC 59.097 55.000 6.64 0.00 36.51 4.02
121 122 1.195115 CTCTCCAAATCTCCGGTGGA 58.805 55.000 10.13 10.13 39.14 4.02
122 123 0.462759 GCTCTCCAAATCTCCGGTGG 60.463 60.000 0.00 0.43 0.00 4.61
123 124 0.462759 GGCTCTCCAAATCTCCGGTG 60.463 60.000 0.00 0.00 0.00 4.94
124 125 1.908483 GGCTCTCCAAATCTCCGGT 59.092 57.895 0.00 0.00 0.00 5.28
125 126 1.227380 CGGCTCTCCAAATCTCCGG 60.227 63.158 0.00 0.00 33.85 5.14
126 127 1.884926 GCGGCTCTCCAAATCTCCG 60.885 63.158 0.00 0.00 39.81 4.63
127 128 1.884926 CGCGGCTCTCCAAATCTCC 60.885 63.158 0.00 0.00 0.00 3.71
128 129 1.884926 CCGCGGCTCTCCAAATCTC 60.885 63.158 14.67 0.00 0.00 2.75
129 130 2.187946 CCGCGGCTCTCCAAATCT 59.812 61.111 14.67 0.00 0.00 2.40
130 131 3.577313 GCCGCGGCTCTCCAAATC 61.577 66.667 41.71 9.84 38.26 2.17
171 172 4.507916 TCCTCTCCTCCGCCCTCG 62.508 72.222 0.00 0.00 0.00 4.63
172 173 2.520741 CTCCTCTCCTCCGCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
173 174 4.851214 GCTCCTCTCCTCCGCCCT 62.851 72.222 0.00 0.00 0.00 5.19
177 178 2.895426 TTCTCCGCTCCTCTCCTCCG 62.895 65.000 0.00 0.00 0.00 4.63
178 179 0.469144 ATTCTCCGCTCCTCTCCTCC 60.469 60.000 0.00 0.00 0.00 4.30
179 180 0.673437 CATTCTCCGCTCCTCTCCTC 59.327 60.000 0.00 0.00 0.00 3.71
180 181 0.758685 CCATTCTCCGCTCCTCTCCT 60.759 60.000 0.00 0.00 0.00 3.69
181 182 1.745264 CCATTCTCCGCTCCTCTCC 59.255 63.158 0.00 0.00 0.00 3.71
182 183 1.745264 CCCATTCTCCGCTCCTCTC 59.255 63.158 0.00 0.00 0.00 3.20
183 184 1.764054 CCCCATTCTCCGCTCCTCT 60.764 63.158 0.00 0.00 0.00 3.69
184 185 2.812619 CCCCCATTCTCCGCTCCTC 61.813 68.421 0.00 0.00 0.00 3.71
185 186 2.770048 CCCCCATTCTCCGCTCCT 60.770 66.667 0.00 0.00 0.00 3.69
186 187 2.768344 TCCCCCATTCTCCGCTCC 60.768 66.667 0.00 0.00 0.00 4.70
187 188 2.812619 CCTCCCCCATTCTCCGCTC 61.813 68.421 0.00 0.00 0.00 5.03
188 189 2.770048 CCTCCCCCATTCTCCGCT 60.770 66.667 0.00 0.00 0.00 5.52
189 190 2.375345 TTCCTCCCCCATTCTCCGC 61.375 63.158 0.00 0.00 0.00 5.54
190 191 1.271840 TGTTCCTCCCCCATTCTCCG 61.272 60.000 0.00 0.00 0.00 4.63
191 192 0.548510 CTGTTCCTCCCCCATTCTCC 59.451 60.000 0.00 0.00 0.00 3.71
192 193 0.548510 CCTGTTCCTCCCCCATTCTC 59.451 60.000 0.00 0.00 0.00 2.87
193 194 0.121197 TCCTGTTCCTCCCCCATTCT 59.879 55.000 0.00 0.00 0.00 2.40
194 195 0.548510 CTCCTGTTCCTCCCCCATTC 59.451 60.000 0.00 0.00 0.00 2.67
195 196 0.121197 TCTCCTGTTCCTCCCCCATT 59.879 55.000 0.00 0.00 0.00 3.16
196 197 0.327000 CTCTCCTGTTCCTCCCCCAT 60.327 60.000 0.00 0.00 0.00 4.00
197 198 1.081092 CTCTCCTGTTCCTCCCCCA 59.919 63.158 0.00 0.00 0.00 4.96
198 199 0.252742 TTCTCTCCTGTTCCTCCCCC 60.253 60.000 0.00 0.00 0.00 5.40
199 200 1.557371 CTTTCTCTCCTGTTCCTCCCC 59.443 57.143 0.00 0.00 0.00 4.81
200 201 1.557371 CCTTTCTCTCCTGTTCCTCCC 59.443 57.143 0.00 0.00 0.00 4.30
201 202 1.557371 CCCTTTCTCTCCTGTTCCTCC 59.443 57.143 0.00 0.00 0.00 4.30
202 203 1.557371 CCCCTTTCTCTCCTGTTCCTC 59.443 57.143 0.00 0.00 0.00 3.71
203 204 1.662686 CCCCTTTCTCTCCTGTTCCT 58.337 55.000 0.00 0.00 0.00 3.36
204 205 0.621082 CCCCCTTTCTCTCCTGTTCC 59.379 60.000 0.00 0.00 0.00 3.62
205 206 1.557371 CTCCCCCTTTCTCTCCTGTTC 59.443 57.143 0.00 0.00 0.00 3.18
206 207 1.152271 TCTCCCCCTTTCTCTCCTGTT 59.848 52.381 0.00 0.00 0.00 3.16
207 208 0.793617 TCTCCCCCTTTCTCTCCTGT 59.206 55.000 0.00 0.00 0.00 4.00
208 209 1.958288 TTCTCCCCCTTTCTCTCCTG 58.042 55.000 0.00 0.00 0.00 3.86
209 210 2.114506 TCTTTCTCCCCCTTTCTCTCCT 59.885 50.000 0.00 0.00 0.00 3.69
210 211 2.503765 CTCTTTCTCCCCCTTTCTCTCC 59.496 54.545 0.00 0.00 0.00 3.71
211 212 2.093181 GCTCTTTCTCCCCCTTTCTCTC 60.093 54.545 0.00 0.00 0.00 3.20
212 213 1.912731 GCTCTTTCTCCCCCTTTCTCT 59.087 52.381 0.00 0.00 0.00 3.10
213 214 1.406205 CGCTCTTTCTCCCCCTTTCTC 60.406 57.143 0.00 0.00 0.00 2.87
214 215 0.615850 CGCTCTTTCTCCCCCTTTCT 59.384 55.000 0.00 0.00 0.00 2.52
215 216 0.613777 TCGCTCTTTCTCCCCCTTTC 59.386 55.000 0.00 0.00 0.00 2.62
216 217 0.615850 CTCGCTCTTTCTCCCCCTTT 59.384 55.000 0.00 0.00 0.00 3.11
217 218 0.252284 TCTCGCTCTTTCTCCCCCTT 60.252 55.000 0.00 0.00 0.00 3.95
218 219 0.252284 TTCTCGCTCTTTCTCCCCCT 60.252 55.000 0.00 0.00 0.00 4.79
219 220 0.108089 GTTCTCGCTCTTTCTCCCCC 60.108 60.000 0.00 0.00 0.00 5.40
220 221 0.458716 CGTTCTCGCTCTTTCTCCCC 60.459 60.000 0.00 0.00 0.00 4.81
221 222 0.458716 CCGTTCTCGCTCTTTCTCCC 60.459 60.000 0.00 0.00 35.54 4.30
222 223 1.079317 GCCGTTCTCGCTCTTTCTCC 61.079 60.000 0.00 0.00 35.54 3.71
223 224 0.109039 AGCCGTTCTCGCTCTTTCTC 60.109 55.000 0.00 0.00 35.54 2.87
224 225 0.109039 GAGCCGTTCTCGCTCTTTCT 60.109 55.000 2.62 0.00 37.31 2.52
225 226 2.364815 GAGCCGTTCTCGCTCTTTC 58.635 57.895 2.62 0.00 37.31 2.62
226 227 4.580835 GAGCCGTTCTCGCTCTTT 57.419 55.556 2.62 0.00 37.31 2.52
256 257 4.944372 GTAGATCGTGGGCGGCCG 62.944 72.222 24.05 24.05 38.89 6.13
257 258 4.944372 CGTAGATCGTGGGCGGCC 62.944 72.222 23.42 23.42 38.89 6.13
259 260 4.944372 GGCGTAGATCGTGGGCGG 62.944 72.222 0.00 0.00 42.13 6.13
260 261 4.201679 TGGCGTAGATCGTGGGCG 62.202 66.667 0.00 0.00 42.13 6.13
261 262 2.585247 GTGGCGTAGATCGTGGGC 60.585 66.667 0.00 0.00 42.13 5.36
262 263 2.278596 CGTGGCGTAGATCGTGGG 60.279 66.667 0.00 0.00 42.13 4.61
263 264 2.954868 GCGTGGCGTAGATCGTGG 60.955 66.667 0.00 0.00 42.13 4.94
264 265 2.954868 GGCGTGGCGTAGATCGTG 60.955 66.667 0.00 0.00 42.13 4.35
265 266 4.203076 GGGCGTGGCGTAGATCGT 62.203 66.667 0.00 0.00 42.13 3.73
270 271 4.501714 TAAGCGGGCGTGGCGTAG 62.502 66.667 0.00 0.00 35.00 3.51
271 272 4.799824 GTAAGCGGGCGTGGCGTA 62.800 66.667 0.00 0.00 35.00 4.42
274 275 3.876198 CATGTAAGCGGGCGTGGC 61.876 66.667 0.00 0.00 0.00 5.01
275 276 2.435938 ACATGTAAGCGGGCGTGG 60.436 61.111 0.00 0.00 0.00 4.94
276 277 2.749865 CCACATGTAAGCGGGCGTG 61.750 63.158 0.00 0.00 0.00 5.34
277 278 2.435938 CCACATGTAAGCGGGCGT 60.436 61.111 0.00 0.00 0.00 5.68
278 279 3.202001 CCCACATGTAAGCGGGCG 61.202 66.667 6.07 0.00 0.00 6.13
279 280 2.045340 ACCCACATGTAAGCGGGC 60.045 61.111 16.94 0.00 42.97 6.13
280 281 1.451387 GGACCCACATGTAAGCGGG 60.451 63.158 15.72 15.72 44.88 6.13
281 282 1.024579 GTGGACCCACATGTAAGCGG 61.025 60.000 13.92 0.00 45.53 5.52
282 283 1.358725 CGTGGACCCACATGTAAGCG 61.359 60.000 18.20 0.00 46.47 4.68
283 284 1.644786 GCGTGGACCCACATGTAAGC 61.645 60.000 18.20 8.92 46.47 3.09
284 285 0.036388 AGCGTGGACCCACATGTAAG 60.036 55.000 18.20 0.00 46.47 2.34
285 286 0.036765 GAGCGTGGACCCACATGTAA 60.037 55.000 18.20 0.00 46.47 2.41
286 287 1.594833 GAGCGTGGACCCACATGTA 59.405 57.895 18.20 0.00 46.47 2.29
287 288 2.347490 GAGCGTGGACCCACATGT 59.653 61.111 18.20 0.00 46.47 3.21
288 289 2.815211 CGAGCGTGGACCCACATG 60.815 66.667 18.20 5.07 46.47 3.21
289 290 3.296709 GACGAGCGTGGACCCACAT 62.297 63.158 18.20 6.78 46.47 3.21
290 291 3.986006 GACGAGCGTGGACCCACA 61.986 66.667 18.20 0.00 46.47 4.17
291 292 4.736896 GGACGAGCGTGGACCCAC 62.737 72.222 9.08 9.08 43.01 4.61
295 296 1.996786 TTATCCGGACGAGCGTGGAC 61.997 60.000 6.12 0.00 32.33 4.02
296 297 1.721664 CTTATCCGGACGAGCGTGGA 61.722 60.000 6.12 2.17 34.45 4.02
297 298 1.299165 CTTATCCGGACGAGCGTGG 60.299 63.158 6.12 0.00 0.00 4.94
298 299 1.299165 CCTTATCCGGACGAGCGTG 60.299 63.158 6.12 0.00 0.00 5.34
299 300 1.452651 TCCTTATCCGGACGAGCGT 60.453 57.895 6.12 0.00 0.00 5.07
300 301 1.008767 GTCCTTATCCGGACGAGCG 60.009 63.158 6.12 2.34 43.56 5.03
306 307 0.108041 GCGGTTTGTCCTTATCCGGA 60.108 55.000 6.61 6.61 41.24 5.14
307 308 1.093496 GGCGGTTTGTCCTTATCCGG 61.093 60.000 0.00 0.00 41.24 5.14
308 309 1.093496 GGGCGGTTTGTCCTTATCCG 61.093 60.000 0.00 0.00 40.15 4.18
309 310 0.034863 TGGGCGGTTTGTCCTTATCC 60.035 55.000 0.00 0.00 45.26 2.59
310 311 1.092348 GTGGGCGGTTTGTCCTTATC 58.908 55.000 0.00 0.00 45.26 1.75
311 312 0.675522 CGTGGGCGGTTTGTCCTTAT 60.676 55.000 0.00 0.00 45.26 1.73
312 313 1.301874 CGTGGGCGGTTTGTCCTTA 60.302 57.895 0.00 0.00 45.26 2.69
313 314 2.593436 CGTGGGCGGTTTGTCCTT 60.593 61.111 0.00 0.00 45.26 3.36
314 315 3.552384 TCGTGGGCGGTTTGTCCT 61.552 61.111 0.00 0.00 45.26 3.85
315 316 3.351416 GTCGTGGGCGGTTTGTCC 61.351 66.667 0.00 0.00 45.24 4.02
316 317 3.351416 GGTCGTGGGCGGTTTGTC 61.351 66.667 0.00 0.00 38.89 3.18
335 336 3.980989 TCGGTCCGTCCAACCACG 61.981 66.667 11.88 0.00 36.53 4.94
336 337 2.356673 GTCGGTCCGTCCAACCAC 60.357 66.667 11.88 0.00 36.53 4.16
337 338 3.618750 GGTCGGTCCGTCCAACCA 61.619 66.667 20.91 0.00 42.63 3.67
338 339 3.584868 CTGGTCGGTCCGTCCAACC 62.585 68.421 26.80 19.56 43.31 3.77
339 340 2.048503 CTGGTCGGTCCGTCCAAC 60.049 66.667 26.80 11.45 43.31 3.77
340 341 3.307906 CCTGGTCGGTCCGTCCAA 61.308 66.667 26.80 13.57 43.31 3.53
346 347 4.736896 GTGTCGCCTGGTCGGTCC 62.737 72.222 9.91 0.00 34.25 4.46
347 348 4.736896 GGTGTCGCCTGGTCGGTC 62.737 72.222 9.91 5.59 34.25 4.79
377 378 4.873129 TCGCTTGCGATCGGCCTC 62.873 66.667 18.30 0.00 42.61 4.70
378 379 4.227134 ATCGCTTGCGATCGGCCT 62.227 61.111 22.53 2.84 42.61 5.19
379 380 3.706668 GATCGCTTGCGATCGGCC 61.707 66.667 32.30 17.20 42.61 6.13
383 384 2.243810 GCACGATCGCTTGCGATC 59.756 61.111 34.38 34.38 40.76 3.69
387 388 4.210304 GACCGCACGATCGCTTGC 62.210 66.667 16.60 17.42 36.07 4.01
388 389 3.902063 CGACCGCACGATCGCTTG 61.902 66.667 16.60 8.29 35.09 4.01
412 413 2.185310 AATAGATGATCCGGGCGGCC 62.185 60.000 20.04 20.04 34.68 6.13
413 414 0.321653 AAATAGATGATCCGGGCGGC 60.322 55.000 0.00 0.00 34.68 6.53
414 415 1.442769 CAAATAGATGATCCGGGCGG 58.557 55.000 0.00 0.00 0.00 6.13
415 416 1.270839 ACCAAATAGATGATCCGGGCG 60.271 52.381 0.00 0.00 0.00 6.13
416 417 2.154462 CACCAAATAGATGATCCGGGC 58.846 52.381 0.00 0.00 0.00 6.13
417 418 2.154462 GCACCAAATAGATGATCCGGG 58.846 52.381 0.00 0.00 0.00 5.73
418 419 1.800586 CGCACCAAATAGATGATCCGG 59.199 52.381 0.00 0.00 0.00 5.14
419 420 1.195448 GCGCACCAAATAGATGATCCG 59.805 52.381 0.30 0.00 0.00 4.18
420 421 1.195448 CGCGCACCAAATAGATGATCC 59.805 52.381 8.75 0.00 0.00 3.36
421 422 1.195448 CCGCGCACCAAATAGATGATC 59.805 52.381 8.75 0.00 0.00 2.92
422 423 1.229428 CCGCGCACCAAATAGATGAT 58.771 50.000 8.75 0.00 0.00 2.45
423 424 1.436195 GCCGCGCACCAAATAGATGA 61.436 55.000 8.75 0.00 0.00 2.92
424 425 1.009675 GCCGCGCACCAAATAGATG 60.010 57.895 8.75 0.00 0.00 2.90
425 426 2.186826 GGCCGCGCACCAAATAGAT 61.187 57.895 8.75 0.00 0.00 1.98
426 427 2.822255 GGCCGCGCACCAAATAGA 60.822 61.111 8.75 0.00 0.00 1.98
427 428 3.130819 TGGCCGCGCACCAAATAG 61.131 61.111 16.27 0.00 33.12 1.73
428 429 3.436055 GTGGCCGCGCACCAAATA 61.436 61.111 19.79 0.00 39.39 1.40
433 434 2.796245 CTAAAAAGTGGCCGCGCACC 62.796 60.000 11.42 9.17 0.00 5.01
434 435 1.442017 CTAAAAAGTGGCCGCGCAC 60.442 57.895 11.42 4.34 0.00 5.34
435 436 0.958382 ATCTAAAAAGTGGCCGCGCA 60.958 50.000 11.42 0.00 0.00 6.09
436 437 0.170339 AATCTAAAAAGTGGCCGCGC 59.830 50.000 11.42 0.00 0.00 6.86
437 438 2.629639 AAATCTAAAAAGTGGCCGCG 57.370 45.000 11.42 0.00 0.00 6.46
438 439 4.421058 CCTAAAATCTAAAAAGTGGCCGC 58.579 43.478 8.71 8.71 0.00 6.53
439 440 4.157840 AGCCTAAAATCTAAAAAGTGGCCG 59.842 41.667 0.00 0.00 38.69 6.13
440 441 5.047306 ACAGCCTAAAATCTAAAAAGTGGCC 60.047 40.000 0.00 0.00 38.69 5.36
441 442 6.025749 ACAGCCTAAAATCTAAAAAGTGGC 57.974 37.500 0.00 0.00 38.24 5.01
442 443 8.887036 AAAACAGCCTAAAATCTAAAAAGTGG 57.113 30.769 0.00 0.00 0.00 4.00
504 508 0.391661 GAAGCACGAGGAGATGCCAA 60.392 55.000 0.00 0.00 43.12 4.52
510 514 4.382040 CCTTATTTGAGAAGCACGAGGAGA 60.382 45.833 0.00 0.00 0.00 3.71
518 522 3.262420 GTCGAGCCTTATTTGAGAAGCA 58.738 45.455 0.00 0.00 0.00 3.91
534 538 2.892425 GGCCCATTGCTCGTCGAG 60.892 66.667 18.08 18.08 40.92 4.04
535 539 3.030168 ATGGCCCATTGCTCGTCGA 62.030 57.895 0.00 0.00 40.92 4.20
539 543 1.721664 CTGTCATGGCCCATTGCTCG 61.722 60.000 0.00 0.00 40.92 5.03
588 592 5.176958 CGGTTTTCTGATCTTGTTTCGTACT 59.823 40.000 0.00 0.00 0.00 2.73
618 623 4.885838 TCTGTTGAACGATACTACGTACG 58.114 43.478 15.01 15.01 45.83 3.67
619 624 4.727655 GCTCTGTTGAACGATACTACGTAC 59.272 45.833 0.00 0.00 45.83 3.67
620 625 4.201851 GGCTCTGTTGAACGATACTACGTA 60.202 45.833 0.00 0.00 45.83 3.57
622 627 3.106672 GGCTCTGTTGAACGATACTACG 58.893 50.000 0.00 0.00 39.31 3.51
623 628 3.106672 CGGCTCTGTTGAACGATACTAC 58.893 50.000 0.00 0.00 0.00 2.73
624 629 2.098607 CCGGCTCTGTTGAACGATACTA 59.901 50.000 0.00 0.00 0.00 1.82
625 630 1.135083 CCGGCTCTGTTGAACGATACT 60.135 52.381 0.00 0.00 0.00 2.12
626 631 1.278238 CCGGCTCTGTTGAACGATAC 58.722 55.000 0.00 0.00 0.00 2.24
710 719 2.819595 CAACGTGCTGGATCGGGG 60.820 66.667 0.00 0.00 0.00 5.73
911 942 1.545706 GGGAGTGGCTTCCTCTTCGT 61.546 60.000 8.22 0.00 37.40 3.85
933 968 4.277423 ACAACAAAATTCCCGTCGAATCTT 59.723 37.500 0.00 0.00 40.47 2.40
936 971 4.542735 GAACAACAAAATTCCCGTCGAAT 58.457 39.130 0.00 0.00 43.34 3.34
946 981 1.338655 CCCCGGACGAACAACAAAATT 59.661 47.619 0.73 0.00 0.00 1.82
965 1000 2.031163 CCGATCGCTGGGAATCCC 59.969 66.667 12.39 12.39 45.71 3.85
1065 1100 3.904717 TCTCCTATCTGACAGGGAAGAC 58.095 50.000 1.46 0.00 33.66 3.01
1076 1111 1.889829 GGGACGGTGATCTCCTATCTG 59.110 57.143 11.86 0.00 0.00 2.90
1081 1116 2.041819 GGGGGACGGTGATCTCCT 60.042 66.667 11.86 0.00 39.48 3.69
1082 1117 1.687297 GAAGGGGGACGGTGATCTCC 61.687 65.000 3.58 3.58 38.71 3.71
1085 1120 0.976073 TCAGAAGGGGGACGGTGATC 60.976 60.000 0.00 0.00 0.00 2.92
1087 1122 1.080354 ATCAGAAGGGGGACGGTGA 59.920 57.895 0.00 0.00 0.00 4.02
1092 1132 0.985490 AGGAGCATCAGAAGGGGGAC 60.985 60.000 0.00 0.00 36.25 4.46
1124 1164 1.014044 AACCAGCACGATACAGCACG 61.014 55.000 0.00 0.00 0.00 5.34
1138 1185 1.269723 GGCCCGAAGAAAAAGAACCAG 59.730 52.381 0.00 0.00 0.00 4.00
1167 1214 6.079763 CGACCTGAAAATCAAGTACAACATG 58.920 40.000 0.00 0.00 0.00 3.21
1168 1215 5.763204 ACGACCTGAAAATCAAGTACAACAT 59.237 36.000 0.00 0.00 0.00 2.71
1170 1217 5.235616 TCACGACCTGAAAATCAAGTACAAC 59.764 40.000 0.00 0.00 0.00 3.32
1172 1219 4.951254 TCACGACCTGAAAATCAAGTACA 58.049 39.130 0.00 0.00 0.00 2.90
1175 1222 3.189287 GCATCACGACCTGAAAATCAAGT 59.811 43.478 0.00 0.00 30.60 3.16
1178 1225 3.057969 AGCATCACGACCTGAAAATCA 57.942 42.857 0.00 0.00 30.60 2.57
1299 1363 5.183713 CCAACAATTCAGCTGATACCAAGAA 59.816 40.000 19.04 0.00 0.00 2.52
1319 1383 8.182227 GCCTTGATATAACTTCAGTTAACCAAC 58.818 37.037 0.88 0.00 42.93 3.77
1390 1474 3.955650 TCCTCTACTACCAACAGCAAC 57.044 47.619 0.00 0.00 0.00 4.17
1433 1517 3.837570 AACCCCCGTTCCGCAAGAC 62.838 63.158 0.00 0.00 43.02 3.01
1444 1528 2.570284 GCAAGTTCCCAAACCCCCG 61.570 63.158 0.00 0.00 35.92 5.73
1452 1536 5.184864 CCACATTTACATAAGCAAGTTCCCA 59.815 40.000 0.00 0.00 0.00 4.37
1455 1539 7.484959 GCTAACCACATTTACATAAGCAAGTTC 59.515 37.037 0.00 0.00 0.00 3.01
1496 1582 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1497 1583 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1498 1584 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1499 1585 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1500 1586 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1501 1587 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1502 1588 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1503 1589 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1504 1590 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1505 1591 4.700213 ACTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1506 1592 6.590234 AACTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1507 1593 7.947890 ACTAAACTTGGGTCATCTATTTTGGAA 59.052 33.333 0.00 0.00 0.00 3.53
1508 1594 7.466804 ACTAAACTTGGGTCATCTATTTTGGA 58.533 34.615 0.00 0.00 0.00 3.53
1509 1595 7.703058 ACTAAACTTGGGTCATCTATTTTGG 57.297 36.000 0.00 0.00 0.00 3.28
1516 1602 9.449719 CAACTTTATACTAAACTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
1517 1603 8.674607 CCAACTTTATACTAAACTTGGGTCATC 58.325 37.037 8.81 0.00 0.00 2.92
1518 1604 7.614192 CCCAACTTTATACTAAACTTGGGTCAT 59.386 37.037 19.01 0.00 37.92 3.06
1519 1605 6.943718 CCCAACTTTATACTAAACTTGGGTCA 59.056 38.462 19.01 0.00 37.92 4.02
1520 1606 6.944290 ACCCAACTTTATACTAAACTTGGGTC 59.056 38.462 23.21 0.00 45.23 4.46
1521 1607 6.855667 ACCCAACTTTATACTAAACTTGGGT 58.144 36.000 23.21 23.21 44.42 4.51
1522 1608 6.943718 TGACCCAACTTTATACTAAACTTGGG 59.056 38.462 22.39 22.39 43.21 4.12
1523 1609 7.989416 TGACCCAACTTTATACTAAACTTGG 57.011 36.000 9.36 9.36 0.00 3.61
1524 1610 9.449719 AGATGACCCAACTTTATACTAAACTTG 57.550 33.333 0.00 0.00 0.00 3.16
1531 1617 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
1532 1618 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
1533 1619 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
1534 1620 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
1535 1621 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
1536 1622 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1537 1623 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1538 1624 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1539 1625 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1540 1626 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1541 1627 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1542 1628 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1543 1629 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1544 1630 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1545 1631 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1546 1632 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1547 1633 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1548 1634 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1549 1635 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1550 1636 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
1551 1637 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
1552 1638 5.703730 ATATTACTCCCTCCGTTCCAAAA 57.296 39.130 0.00 0.00 0.00 2.44
1553 1639 5.703730 AATATTACTCCCTCCGTTCCAAA 57.296 39.130 0.00 0.00 0.00 3.28
1554 1640 5.703730 AAATATTACTCCCTCCGTTCCAA 57.296 39.130 0.00 0.00 0.00 3.53
1555 1641 6.743208 GCATAAATATTACTCCCTCCGTTCCA 60.743 42.308 0.00 0.00 0.00 3.53
1556 1642 5.642491 GCATAAATATTACTCCCTCCGTTCC 59.358 44.000 0.00 0.00 0.00 3.62
1557 1643 5.642491 GGCATAAATATTACTCCCTCCGTTC 59.358 44.000 0.00 0.00 0.00 3.95
1558 1644 5.309806 AGGCATAAATATTACTCCCTCCGTT 59.690 40.000 0.00 0.00 0.00 4.44
1559 1645 4.844655 AGGCATAAATATTACTCCCTCCGT 59.155 41.667 0.00 0.00 0.00 4.69
1560 1646 5.046591 TCAGGCATAAATATTACTCCCTCCG 60.047 44.000 0.00 0.00 0.00 4.63
1561 1647 6.374417 TCAGGCATAAATATTACTCCCTCC 57.626 41.667 0.00 0.00 0.00 4.30
1562 1648 8.870075 AAATCAGGCATAAATATTACTCCCTC 57.130 34.615 0.00 0.00 0.00 4.30
1563 1649 9.660544 AAAAATCAGGCATAAATATTACTCCCT 57.339 29.630 0.00 0.00 0.00 4.20
1590 1682 2.368548 TGTGCTCAGCTAACCAGAAAGA 59.631 45.455 0.00 0.00 0.00 2.52
1591 1683 2.481952 GTGTGCTCAGCTAACCAGAAAG 59.518 50.000 0.00 0.00 0.00 2.62
1592 1684 2.158827 TGTGTGCTCAGCTAACCAGAAA 60.159 45.455 0.00 0.00 0.00 2.52
1598 1690 0.035458 AGGGTGTGTGCTCAGCTAAC 59.965 55.000 0.00 0.00 36.29 2.34
1608 1700 2.571212 TCTAAACTGCAAGGGTGTGTG 58.429 47.619 0.00 0.00 39.30 3.82
1609 1701 3.508845 ATCTAAACTGCAAGGGTGTGT 57.491 42.857 0.00 0.00 39.30 3.72
1610 1702 4.579869 ACTATCTAAACTGCAAGGGTGTG 58.420 43.478 0.00 0.00 39.30 3.82
1611 1703 4.910458 ACTATCTAAACTGCAAGGGTGT 57.090 40.909 0.00 0.00 39.30 4.16
1710 1802 7.120716 TGGTAGTTCCTTTTTCAACTAAACCT 58.879 34.615 0.00 0.00 36.96 3.50
1766 1866 7.004086 TGAACTTTCTCAACATTGAACCCTAT 58.996 34.615 0.00 0.00 36.64 2.57
1930 2030 4.253685 TCAGCAGAAAGATAAAAGACGGG 58.746 43.478 0.00 0.00 0.00 5.28
2043 2160 4.165950 TGGGCTAGCTTTCCAGATAAATGA 59.834 41.667 15.72 0.00 0.00 2.57
2110 2227 3.594603 TGTTTTTGTTTTTGCGAGGGA 57.405 38.095 0.00 0.00 0.00 4.20
2111 2228 4.670227 TTTGTTTTTGTTTTTGCGAGGG 57.330 36.364 0.00 0.00 0.00 4.30
2112 2229 7.020602 AGATTTTTGTTTTTGTTTTTGCGAGG 58.979 30.769 0.00 0.00 0.00 4.63
2113 2230 8.357246 CAAGATTTTTGTTTTTGTTTTTGCGAG 58.643 29.630 0.00 0.00 0.00 5.03
2114 2231 8.070171 TCAAGATTTTTGTTTTTGTTTTTGCGA 58.930 25.926 0.00 0.00 0.00 5.10
2115 2232 8.208855 TCAAGATTTTTGTTTTTGTTTTTGCG 57.791 26.923 0.00 0.00 0.00 4.85
2121 2238 9.138062 GCCAAAATCAAGATTTTTGTTTTTGTT 57.862 25.926 22.02 0.00 45.67 2.83
2122 2239 7.484324 CGCCAAAATCAAGATTTTTGTTTTTGT 59.516 29.630 22.02 0.00 45.67 2.83
2123 2240 7.484324 ACGCCAAAATCAAGATTTTTGTTTTTG 59.516 29.630 19.45 19.45 45.67 2.44
2124 2241 7.534282 ACGCCAAAATCAAGATTTTTGTTTTT 58.466 26.923 15.94 3.28 45.67 1.94
2125 2242 7.082700 ACGCCAAAATCAAGATTTTTGTTTT 57.917 28.000 15.94 0.00 45.67 2.43
2126 2243 6.676237 ACGCCAAAATCAAGATTTTTGTTT 57.324 29.167 15.94 4.36 45.67 2.83
2127 2244 6.676237 AACGCCAAAATCAAGATTTTTGTT 57.324 29.167 15.94 16.26 45.67 2.83
2128 2245 7.961325 ATAACGCCAAAATCAAGATTTTTGT 57.039 28.000 15.94 12.44 45.67 2.83
2134 2251 9.520204 CAAGAAATATAACGCCAAAATCAAGAT 57.480 29.630 0.00 0.00 0.00 2.40
2135 2252 8.519526 ACAAGAAATATAACGCCAAAATCAAGA 58.480 29.630 0.00 0.00 0.00 3.02
2136 2253 8.586273 CACAAGAAATATAACGCCAAAATCAAG 58.414 33.333 0.00 0.00 0.00 3.02
2137 2254 7.543868 CCACAAGAAATATAACGCCAAAATCAA 59.456 33.333 0.00 0.00 0.00 2.57
2138 2255 7.032580 CCACAAGAAATATAACGCCAAAATCA 58.967 34.615 0.00 0.00 0.00 2.57
2139 2256 6.019881 GCCACAAGAAATATAACGCCAAAATC 60.020 38.462 0.00 0.00 0.00 2.17
2140 2257 5.810074 GCCACAAGAAATATAACGCCAAAAT 59.190 36.000 0.00 0.00 0.00 1.82
2141 2258 5.164954 GCCACAAGAAATATAACGCCAAAA 58.835 37.500 0.00 0.00 0.00 2.44
2142 2259 4.381079 GGCCACAAGAAATATAACGCCAAA 60.381 41.667 0.00 0.00 33.99 3.28
2143 2260 3.129638 GGCCACAAGAAATATAACGCCAA 59.870 43.478 0.00 0.00 33.99 4.52
2144 2261 2.685897 GGCCACAAGAAATATAACGCCA 59.314 45.455 0.00 0.00 33.99 5.69
2145 2262 2.034179 GGGCCACAAGAAATATAACGCC 59.966 50.000 4.39 0.00 0.00 5.68
2146 2263 2.685897 TGGGCCACAAGAAATATAACGC 59.314 45.455 0.00 0.00 0.00 4.84
2151 2268 7.068702 TGAAATAGATGGGCCACAAGAAATAT 58.931 34.615 9.28 0.00 0.00 1.28
2175 2292 9.843334 AGTGCAAAATGGCAATAAAATAAAATG 57.157 25.926 0.00 0.00 46.93 2.32
2191 2308 3.312146 GTGGGACCAAAAAGTGCAAAATG 59.688 43.478 0.00 0.00 0.00 2.32
2248 2365 6.238184 GCACCTTAATTTTTGCCATCTTATGC 60.238 38.462 0.00 0.00 0.00 3.14
2299 2419 9.520515 AACAAGATGTAGGAAATTGAACTATGT 57.479 29.630 0.00 0.00 0.00 2.29
2329 2449 2.096019 CGAACTGAAAGCTTTCTCCAGC 60.096 50.000 33.03 19.74 37.60 4.85
2542 2662 6.272558 AGTGGTCCCTTTATGTTTCTACTTCT 59.727 38.462 0.00 0.00 0.00 2.85
2569 2689 6.073167 CGAATCAAGATAATTGAGCTGCTCAT 60.073 38.462 30.80 20.19 40.39 2.90
2607 2727 9.967346 GTGCATAAGAATAGTAGTGATAACTGA 57.033 33.333 0.00 0.00 0.00 3.41
2969 3205 9.801873 TCTTCCAAAAACAGAAGAAAACATAAG 57.198 29.630 0.14 0.00 44.13 1.73
3037 3273 3.585862 TCAAATCCTCACAGACGCTAAC 58.414 45.455 0.00 0.00 0.00 2.34
3110 3346 9.075678 AGATCATTCAAGAGAAAGACAACAAAT 57.924 29.630 0.00 0.00 34.65 2.32
3213 3449 2.683968 TCAACCACGTAGATCTGCAAC 58.316 47.619 11.58 0.00 0.00 4.17
3483 3719 6.084277 GGCGGTCAAGTTTTGTTATCTTAAG 58.916 40.000 0.00 0.00 0.00 1.85
3484 3720 5.531659 TGGCGGTCAAGTTTTGTTATCTTAA 59.468 36.000 0.00 0.00 0.00 1.85
3505 3741 7.228308 AGACTTCTCATATCTGCTAAAAATGGC 59.772 37.037 0.00 0.00 0.00 4.40
3520 3757 6.209589 ACACTAACAAGCAGAGACTTCTCATA 59.790 38.462 8.93 0.00 45.21 2.15
3597 3834 2.802816 CAAAAGGAGTGGAGAACGAGTG 59.197 50.000 0.00 0.00 0.00 3.51
3987 4241 5.518847 CGAAGCTTATCACGAAAACTGGATA 59.481 40.000 0.00 0.00 0.00 2.59
4045 4299 3.438781 GGTAAATTTGATGCGGTCAGACA 59.561 43.478 2.17 0.00 38.29 3.41
4068 4322 6.818142 CACACTATCCATGACAAGATTGTACA 59.182 38.462 0.00 0.00 42.43 2.90
4555 4905 1.421410 GAAGACCATACGTGCCTGCG 61.421 60.000 0.00 0.00 37.94 5.18
4563 4913 5.877031 TCGTTTTAGAGAGAAGACCATACG 58.123 41.667 0.00 0.00 0.00 3.06
4584 4934 5.627172 TCTTTGATTCGGCAAGTATTTTCG 58.373 37.500 0.00 0.00 0.00 3.46
4591 4941 2.303022 TCTCCTCTTTGATTCGGCAAGT 59.697 45.455 0.00 0.00 0.00 3.16
4645 4995 3.514706 TGGTACGTTCCTATAGCAAACCA 59.485 43.478 12.78 3.56 32.30 3.67
4652 5002 7.228906 TCAGAGAAGAATGGTACGTTCCTATAG 59.771 40.741 12.78 0.00 0.00 1.31
4654 5004 5.892119 TCAGAGAAGAATGGTACGTTCCTAT 59.108 40.000 12.78 0.96 0.00 2.57
4655 5005 5.258841 TCAGAGAAGAATGGTACGTTCCTA 58.741 41.667 12.78 0.00 0.00 2.94
4666 5016 4.882427 AGGTGCATGATTCAGAGAAGAATG 59.118 41.667 0.00 0.00 38.30 2.67
4708 5059 9.567848 AAATAACAGTTTCAGTTTGTAACAGTG 57.432 29.630 0.00 0.00 30.47 3.66
4720 5071 6.805713 ACAAACCCAGAAATAACAGTTTCAG 58.194 36.000 0.00 0.00 39.88 3.02
4721 5072 6.378564 TGACAAACCCAGAAATAACAGTTTCA 59.621 34.615 0.00 0.00 39.88 2.69
4722 5073 6.801575 TGACAAACCCAGAAATAACAGTTTC 58.198 36.000 0.00 0.00 38.16 2.78
4727 5078 5.654650 ACAACTGACAAACCCAGAAATAACA 59.345 36.000 0.00 0.00 35.69 2.41
4804 5155 0.189574 TTCCCCTTTGTGGAATGCCA 59.810 50.000 0.00 0.00 43.47 4.92
4805 5156 1.001974 GTTTCCCCTTTGTGGAATGCC 59.998 52.381 0.00 0.00 41.36 4.40
4806 5157 1.970640 AGTTTCCCCTTTGTGGAATGC 59.029 47.619 0.00 0.00 41.36 3.56
4807 5158 4.662278 TCTAGTTTCCCCTTTGTGGAATG 58.338 43.478 0.00 0.00 41.36 2.67
4808 5159 5.536497 ATCTAGTTTCCCCTTTGTGGAAT 57.464 39.130 0.00 0.00 41.36 3.01
4810 5161 4.352595 TCAATCTAGTTTCCCCTTTGTGGA 59.647 41.667 0.00 0.00 38.35 4.02
4811 5162 4.662278 TCAATCTAGTTTCCCCTTTGTGG 58.338 43.478 0.00 0.00 0.00 4.17
4825 5176 7.464358 CAACCGGTAAAGATTGTTCAATCTAG 58.536 38.462 22.79 13.94 38.49 2.43
4827 5178 5.335661 GCAACCGGTAAAGATTGTTCAATCT 60.336 40.000 18.64 18.64 41.02 2.40
4839 5190 0.536460 ACCCAGTGCAACCGGTAAAG 60.536 55.000 8.00 1.66 38.14 1.85
4844 5195 1.312371 CCATAACCCAGTGCAACCGG 61.312 60.000 0.00 0.00 37.80 5.28
4845 5196 1.933115 GCCATAACCCAGTGCAACCG 61.933 60.000 0.00 0.00 37.80 4.44
4846 5197 0.897863 TGCCATAACCCAGTGCAACC 60.898 55.000 0.00 0.00 37.80 3.77
4847 5198 1.134946 GATGCCATAACCCAGTGCAAC 59.865 52.381 0.00 0.00 35.30 4.17
4848 5199 1.005805 AGATGCCATAACCCAGTGCAA 59.994 47.619 0.00 0.00 35.30 4.08
4849 5200 0.625316 AGATGCCATAACCCAGTGCA 59.375 50.000 0.00 0.00 36.23 4.57
4850 5201 3.502164 AGATGCCATAACCCAGTGC 57.498 52.632 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.