Multiple sequence alignment - TraesCS6A01G267800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G267800 chr6A 100.000 4239 0 0 1 4239 494045573 494049811 0.000000e+00 7829.0
1 TraesCS6A01G267800 chr6A 93.672 1991 107 8 1215 3193 495154301 495152318 0.000000e+00 2961.0
2 TraesCS6A01G267800 chr6A 92.791 1956 116 12 1251 3195 493842322 493844263 0.000000e+00 2808.0
3 TraesCS6A01G267800 chr6A 92.132 1881 129 11 1215 3082 493756086 493757960 0.000000e+00 2636.0
4 TraesCS6A01G267800 chr6A 87.446 693 37 21 3 650 493841074 493841761 0.000000e+00 752.0
5 TraesCS6A01G267800 chr6A 88.542 480 32 16 686 1160 493841863 493842324 1.030000e-155 560.0
6 TraesCS6A01G267800 chr6A 81.296 540 68 21 3196 3719 493830942 493831464 1.420000e-109 407.0
7 TraesCS6A01G267800 chr6A 94.186 258 7 3 2938 3193 494878443 494878192 1.850000e-103 387.0
8 TraesCS6A01G267800 chr6A 80.000 535 75 17 3199 3716 493845636 493846155 2.410000e-97 366.0
9 TraesCS6A01G267800 chr6A 89.500 200 20 1 3740 3938 493831352 493831551 7.040000e-63 252.0
10 TraesCS6A01G267800 chr6A 98.592 142 1 1 3710 3851 494049151 494049291 2.530000e-62 250.0
11 TraesCS6A01G267800 chr6A 98.592 142 1 1 3579 3719 494049282 494049423 2.530000e-62 250.0
12 TraesCS6A01G267800 chr6A 86.765 204 26 1 3736 3938 493846042 493846245 4.260000e-55 226.0
13 TraesCS6A01G267800 chr6A 80.723 332 25 22 48 343 493863148 493863476 5.520000e-54 222.0
14 TraesCS6A01G267800 chr6A 85.520 221 14 8 171 390 495142602 495142399 9.230000e-52 215.0
15 TraesCS6A01G267800 chr6A 88.028 142 6 4 1 131 494868035 494867894 1.580000e-34 158.0
16 TraesCS6A01G267800 chr6A 91.358 81 6 1 3322 3402 493845722 493845801 4.480000e-20 110.0
17 TraesCS6A01G267800 chr6A 88.889 81 8 1 3322 3402 493831032 493831111 9.700000e-17 99.0
18 TraesCS6A01G267800 chr6B 96.579 1783 54 4 1384 3163 529889833 529891611 0.000000e+00 2948.0
19 TraesCS6A01G267800 chr6B 94.385 1870 91 8 1215 3071 530852419 530850551 0.000000e+00 2859.0
20 TraesCS6A01G267800 chr6B 90.886 1997 153 16 1220 3195 529773827 529775815 0.000000e+00 2652.0
21 TraesCS6A01G267800 chr6B 86.013 765 46 25 601 1314 529888983 529889737 0.000000e+00 763.0
22 TraesCS6A01G267800 chr6B 85.174 661 42 27 1 605 529882205 529882865 1.000000e-175 627.0
23 TraesCS6A01G267800 chr6B 89.183 416 21 13 214 605 529883019 529883434 8.190000e-137 497.0
24 TraesCS6A01G267800 chr6B 82.337 368 44 13 3196 3556 529891846 529892199 2.480000e-77 300.0
25 TraesCS6A01G267800 chr6B 94.118 85 3 2 48 131 529875879 529875962 1.240000e-25 128.0
26 TraesCS6A01G267800 chr6B 93.902 82 4 1 3321 3402 529891933 529892013 5.760000e-24 122.0
27 TraesCS6A01G267800 chr6B 78.302 106 16 6 3091 3193 530850555 530850454 1.270000e-05 62.1
28 TraesCS6A01G267800 chr6D 92.440 2037 117 20 579 2589 350084805 350082780 0.000000e+00 2874.0
29 TraesCS6A01G267800 chr6D 94.441 1853 88 12 1212 3051 349031196 349033046 0.000000e+00 2837.0
30 TraesCS6A01G267800 chr6D 93.045 1898 107 17 1212 3096 348861139 348863024 0.000000e+00 2750.0
31 TraesCS6A01G267800 chr6D 92.621 1450 94 8 1753 3195 350204779 350203336 0.000000e+00 2073.0
32 TraesCS6A01G267800 chr6D 89.583 1008 56 28 2582 3560 350063445 350062458 0.000000e+00 1234.0
33 TraesCS6A01G267800 chr6D 95.910 489 17 3 2562 3047 348994618 348995106 0.000000e+00 789.0
34 TraesCS6A01G267800 chr6D 82.338 804 69 37 377 1147 349172452 349173215 7.730000e-177 630.0
35 TraesCS6A01G267800 chr6D 88.554 498 26 2 2558 3047 349175691 349176165 3.680000e-160 575.0
36 TraesCS6A01G267800 chr6D 79.159 547 75 22 3199 3719 350136792 350136259 4.060000e-90 342.0
37 TraesCS6A01G267800 chr6D 86.667 285 13 9 330 589 350087798 350087514 4.150000e-75 292.0
38 TraesCS6A01G267800 chr6D 90.732 205 18 1 3735 3938 350136376 350136172 5.400000e-69 272.0
39 TraesCS6A01G267800 chr6D 83.498 303 28 11 48 329 350116109 350115808 3.250000e-66 263.0
40 TraesCS6A01G267800 chr6D 90.052 191 17 2 155 343 350131765 350131575 3.270000e-61 246.0
41 TraesCS6A01G267800 chr6D 88.889 198 21 1 3742 3938 350062115 350061918 4.230000e-60 243.0
42 TraesCS6A01G267800 chr6D 85.169 236 17 5 155 390 349082837 349083054 4.260000e-55 226.0
43 TraesCS6A01G267800 chr6D 86.628 172 13 8 3558 3719 350062176 350062005 9.360000e-42 182.0
44 TraesCS6A01G267800 chr6D 86.628 172 9 5 192 363 349107323 349107480 1.210000e-40 178.0
45 TraesCS6A01G267800 chr6D 86.525 141 8 4 1 130 350131981 350131841 1.230000e-30 145.0
46 TraesCS6A01G267800 chr6D 84.507 142 11 4 1 131 349082624 349082765 3.440000e-26 130.0
47 TraesCS6A01G267800 chr6D 90.123 81 7 1 3322 3402 350136705 350136626 2.080000e-18 104.0
48 TraesCS6A01G267800 chr6D 92.537 67 5 0 1106 1172 349030788 349030854 3.490000e-16 97.1
49 TraesCS6A01G267800 chr6D 83.908 87 5 2 3091 3177 349033061 349033138 1.630000e-09 75.0
50 TraesCS6A01G267800 chr3A 92.000 150 10 2 3916 4064 343230578 343230430 4.290000e-50 209.0
51 TraesCS6A01G267800 chr3A 92.593 135 10 0 3929 4063 17261536 17261670 1.200000e-45 195.0
52 TraesCS6A01G267800 chr3A 90.909 143 13 0 3921 4063 38671233 38671375 4.330000e-45 193.0
53 TraesCS6A01G267800 chr5A 93.939 132 8 0 3932 4063 81476817 81476686 2.580000e-47 200.0
54 TraesCS6A01G267800 chr7A 91.724 145 9 2 3924 4067 39319171 39319313 9.300000e-47 198.0
55 TraesCS6A01G267800 chr7A 91.549 142 11 1 3933 4073 409866208 409866067 1.200000e-45 195.0
56 TraesCS6A01G267800 chr7A 91.549 142 9 3 3937 4076 351612883 351612743 4.330000e-45 193.0
57 TraesCS6A01G267800 chr7A 91.429 140 12 0 3929 4068 442842998 442843137 4.330000e-45 193.0
58 TraesCS6A01G267800 chr2A 92.701 137 9 1 3929 4064 495540832 495540696 3.340000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G267800 chr6A 494045573 494049811 4238 False 2776.333333 7829 99.061333 1 4239 3 chr6A.!!$F5 4238
1 TraesCS6A01G267800 chr6A 495152318 495154301 1983 True 2961.000000 2961 93.672000 1215 3193 1 chr6A.!!$R4 1978
2 TraesCS6A01G267800 chr6A 493756086 493757960 1874 False 2636.000000 2636 92.132000 1215 3082 1 chr6A.!!$F1 1867
3 TraesCS6A01G267800 chr6A 493841074 493846245 5171 False 803.666667 2808 87.817000 3 3938 6 chr6A.!!$F4 3935
4 TraesCS6A01G267800 chr6A 493830942 493831551 609 False 252.666667 407 86.561667 3196 3938 3 chr6A.!!$F3 742
5 TraesCS6A01G267800 chr6B 529773827 529775815 1988 False 2652.000000 2652 90.886000 1220 3195 1 chr6B.!!$F1 1975
6 TraesCS6A01G267800 chr6B 530850454 530852419 1965 True 1460.550000 2859 86.343500 1215 3193 2 chr6B.!!$R1 1978
7 TraesCS6A01G267800 chr6B 529888983 529892199 3216 False 1033.250000 2948 89.707750 601 3556 4 chr6B.!!$F4 2955
8 TraesCS6A01G267800 chr6B 529882205 529883434 1229 False 562.000000 627 87.178500 1 605 2 chr6B.!!$F3 604
9 TraesCS6A01G267800 chr6D 348861139 348863024 1885 False 2750.000000 2750 93.045000 1212 3096 1 chr6D.!!$F1 1884
10 TraesCS6A01G267800 chr6D 350203336 350204779 1443 True 2073.000000 2073 92.621000 1753 3195 1 chr6D.!!$R2 1442
11 TraesCS6A01G267800 chr6D 350082780 350087798 5018 True 1583.000000 2874 89.553500 330 2589 2 chr6D.!!$R4 2259
12 TraesCS6A01G267800 chr6D 349030788 349033138 2350 False 1003.033333 2837 90.295333 1106 3177 3 chr6D.!!$F4 2071
13 TraesCS6A01G267800 chr6D 349172452 349176165 3713 False 602.500000 630 85.446000 377 3047 2 chr6D.!!$F6 2670
14 TraesCS6A01G267800 chr6D 350061918 350063445 1527 True 553.000000 1234 88.366667 2582 3938 3 chr6D.!!$R3 1356
15 TraesCS6A01G267800 chr6D 350136172 350136792 620 True 239.333333 342 86.671333 3199 3938 3 chr6D.!!$R6 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 3689 0.246635 CGGAGACCGGTGAATGAGTT 59.753 55.0 14.63 0.0 44.15 3.01 F
1039 3960 0.039708 GCAGCCAAAGCAGTTCAGAC 60.040 55.0 0.00 0.0 43.56 3.51 F
1064 3985 0.108138 GCGAGCTAGCCTTGGAGAAA 60.108 55.0 12.13 0.0 0.00 2.52 F
1656 7258 0.252284 ACACCATCCTCGTCTCCCTT 60.252 55.0 0.00 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 7216 0.768221 AGTTGCCCCAGAAGGAGTCA 60.768 55.000 0.0 0.0 38.24 3.41 R
2718 8328 1.002087 CCGGCAAGGAAGAAGTACTGT 59.998 52.381 0.0 0.0 45.00 3.55 R
3003 8613 2.353704 CCTGTAGTTCTTGACGATGCCA 60.354 50.000 0.0 0.0 0.00 4.92 R
3640 11392 0.250234 CCTCATTCTTGGCGTCTGGA 59.750 55.000 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.821216 ATAGGGGCGTTGAAACTGTG 58.179 50.000 0.00 0.00 0.00 3.66
44 45 5.125417 ACTGTGGGATGAATTACAAATTCCG 59.875 40.000 9.29 0.00 0.00 4.30
131 143 3.568007 TGGCAGTGCTTGTTTAGTTTAGG 59.432 43.478 16.11 0.00 0.00 2.69
133 145 4.083271 GGCAGTGCTTGTTTAGTTTAGGAG 60.083 45.833 16.11 0.00 0.00 3.69
135 147 5.699458 GCAGTGCTTGTTTAGTTTAGGAGTA 59.301 40.000 8.18 0.00 0.00 2.59
138 152 9.601217 CAGTGCTTGTTTAGTTTAGGAGTATAT 57.399 33.333 0.00 0.00 0.00 0.86
175 209 8.956533 AAATAGATTCAGAAGAGGTAAGAAGC 57.043 34.615 0.00 0.00 0.00 3.86
177 211 6.558488 AGATTCAGAAGAGGTAAGAAGCAT 57.442 37.500 0.00 0.00 0.00 3.79
179 213 7.725251 AGATTCAGAAGAGGTAAGAAGCATAG 58.275 38.462 0.00 0.00 0.00 2.23
180 214 5.860941 TCAGAAGAGGTAAGAAGCATAGG 57.139 43.478 0.00 0.00 0.00 2.57
280 316 3.750371 TGGCACGATATGATAAAAGGGG 58.250 45.455 0.00 0.00 0.00 4.79
281 317 3.392947 TGGCACGATATGATAAAAGGGGA 59.607 43.478 0.00 0.00 0.00 4.81
282 318 4.003648 GGCACGATATGATAAAAGGGGAG 58.996 47.826 0.00 0.00 0.00 4.30
423 468 2.995283 TGTGGAGAATGCCTGAATGAG 58.005 47.619 0.00 0.00 0.00 2.90
465 510 3.069300 GCAGATATGACTTGAGAGCTGGA 59.931 47.826 0.00 0.00 0.00 3.86
520 565 5.596836 TGAGGCAAGAACTGTTCAAATTT 57.403 34.783 21.50 5.25 0.00 1.82
523 568 5.519722 AGGCAAGAACTGTTCAAATTTACG 58.480 37.500 21.50 3.06 0.00 3.18
608 3398 6.536941 CCTGCTAGATAAGGAAAGAACAACTC 59.463 42.308 0.00 0.00 35.40 3.01
813 3689 0.246635 CGGAGACCGGTGAATGAGTT 59.753 55.000 14.63 0.00 44.15 3.01
858 3734 0.798776 CCTGCTGCGTCGAAATTTCT 59.201 50.000 15.92 0.00 0.00 2.52
1002 3904 2.254651 GCAGCAGAACACAGCAGC 59.745 61.111 0.00 0.00 36.15 5.25
1003 3905 2.549198 GCAGCAGAACACAGCAGCA 61.549 57.895 0.00 0.00 42.04 4.41
1004 3906 2.027325 CAGCAGAACACAGCAGCAA 58.973 52.632 0.00 0.00 0.00 3.91
1005 3907 0.040336 CAGCAGAACACAGCAGCAAG 60.040 55.000 0.00 0.00 0.00 4.01
1006 3908 1.371389 GCAGAACACAGCAGCAAGC 60.371 57.895 0.00 0.00 46.19 4.01
1039 3960 0.039708 GCAGCCAAAGCAGTTCAGAC 60.040 55.000 0.00 0.00 43.56 3.51
1057 3978 1.261238 ACAGGAAGCGAGCTAGCCTT 61.261 55.000 15.76 7.82 38.01 4.35
1059 3980 1.522580 GGAAGCGAGCTAGCCTTGG 60.523 63.158 15.76 0.00 38.01 3.61
1060 3981 1.517832 GAAGCGAGCTAGCCTTGGA 59.482 57.895 15.76 0.00 38.01 3.53
1061 3982 0.529555 GAAGCGAGCTAGCCTTGGAG 60.530 60.000 15.76 0.00 38.01 3.86
1062 3983 0.972983 AAGCGAGCTAGCCTTGGAGA 60.973 55.000 15.76 0.00 38.01 3.71
1063 3984 0.972983 AGCGAGCTAGCCTTGGAGAA 60.973 55.000 15.76 0.00 38.01 2.87
1064 3985 0.108138 GCGAGCTAGCCTTGGAGAAA 60.108 55.000 12.13 0.00 0.00 2.52
1067 3988 2.093973 CGAGCTAGCCTTGGAGAAAGAA 60.094 50.000 12.13 0.00 38.24 2.52
1068 3989 3.617531 CGAGCTAGCCTTGGAGAAAGAAA 60.618 47.826 12.13 0.00 38.24 2.52
1069 3990 4.327680 GAGCTAGCCTTGGAGAAAGAAAA 58.672 43.478 12.13 0.00 38.24 2.29
1070 3991 4.729868 AGCTAGCCTTGGAGAAAGAAAAA 58.270 39.130 12.13 0.00 38.24 1.94
1071 3992 4.764308 AGCTAGCCTTGGAGAAAGAAAAAG 59.236 41.667 12.13 0.00 38.24 2.27
1079 4000 5.835113 TGGAGAAAGAAAAAGTTCACAGG 57.165 39.130 0.00 0.00 36.09 4.00
1110 4031 4.240096 GCTTCCAACAAATTCATCACCTG 58.760 43.478 0.00 0.00 0.00 4.00
1172 6388 2.183555 CCTGCCCGAGGTAACGAC 59.816 66.667 0.00 0.00 46.39 4.34
1225 6754 0.979665 TCCTCCTCTTCTGGTTGCTG 59.020 55.000 0.00 0.00 0.00 4.41
1228 6757 0.318441 TCCTCTTCTGGTTGCTGACG 59.682 55.000 0.00 0.00 0.00 4.35
1270 6799 1.071471 CAGAGTCACGGCCCAAAGT 59.929 57.895 0.00 0.00 0.00 2.66
1282 6811 3.697166 GGCCCAAAGTTTCAAGAGGATA 58.303 45.455 0.00 0.00 0.00 2.59
1292 6821 5.104360 AGTTTCAAGAGGATAATAGCCTGCA 60.104 40.000 0.02 0.00 35.44 4.41
1293 6822 4.613925 TCAAGAGGATAATAGCCTGCAG 57.386 45.455 6.78 6.78 35.44 4.41
1294 6823 3.072944 CAAGAGGATAATAGCCTGCAGC 58.927 50.000 8.66 3.91 44.25 5.25
1476 7078 1.817099 CGAATGCCTGGAGAGCACC 60.817 63.158 0.00 0.00 44.40 5.01
1656 7258 0.252284 ACACCATCCTCGTCTCCCTT 60.252 55.000 0.00 0.00 0.00 3.95
1795 7397 2.664851 CGCAGACCGTGGCTTTCA 60.665 61.111 0.00 0.00 0.00 2.69
2157 7759 3.659183 AAGATCAGCATTAAGGTGCCT 57.341 42.857 0.00 0.00 46.19 4.75
2259 7861 3.197790 CTCGACAAGGCGGCCATG 61.198 66.667 23.09 22.34 0.00 3.66
2286 7888 0.626382 AGTCGGACATGGAGGAGAGA 59.374 55.000 11.27 0.00 0.00 3.10
2401 8003 1.226974 ATCGTGTCATCGGCCTTCG 60.227 57.895 0.00 0.00 40.90 3.79
2493 8095 4.143333 GCGTCGCTGGCCTCCTTA 62.143 66.667 10.68 0.00 0.00 2.69
2843 8453 4.819761 TCTGCTCACCATCGCGCC 62.820 66.667 0.00 0.00 0.00 6.53
3003 8613 2.857489 GCTCAACTTCGTCGTGTACAGT 60.857 50.000 0.00 0.00 0.00 3.55
3073 8683 6.668541 TTGCTCTAAATCTTCAAGATTCCG 57.331 37.500 13.20 7.55 43.67 4.30
3182 9012 5.941788 ACACAAGAAACACTAGGAGGAAAT 58.058 37.500 0.00 0.00 0.00 2.17
3274 10677 4.453136 TCATTTCCTCCGTCCGTTTTTAAG 59.547 41.667 0.00 0.00 0.00 1.85
3282 10685 6.073112 CCTCCGTCCGTTTTTAAGTTAAATGA 60.073 38.462 8.84 2.11 0.00 2.57
3283 10686 7.256756 TCCGTCCGTTTTTAAGTTAAATGAA 57.743 32.000 8.84 0.00 0.00 2.57
3284 10687 7.354257 TCCGTCCGTTTTTAAGTTAAATGAAG 58.646 34.615 8.84 6.37 0.00 3.02
3285 10688 6.087159 CCGTCCGTTTTTAAGTTAAATGAAGC 59.913 38.462 8.84 0.00 0.00 3.86
3286 10689 6.854381 CGTCCGTTTTTAAGTTAAATGAAGCT 59.146 34.615 8.84 0.00 0.00 3.74
3287 10690 7.059147 CGTCCGTTTTTAAGTTAAATGAAGCTC 59.941 37.037 8.84 0.00 0.00 4.09
3288 10691 8.074370 GTCCGTTTTTAAGTTAAATGAAGCTCT 58.926 33.333 8.84 0.00 0.00 4.09
3289 10692 8.626526 TCCGTTTTTAAGTTAAATGAAGCTCTT 58.373 29.630 8.84 0.00 0.00 2.85
3290 10693 9.887406 CCGTTTTTAAGTTAAATGAAGCTCTTA 57.113 29.630 8.84 0.00 0.00 2.10
3304 10707 7.488187 TGAAGCTCTTAATAGTCATGATTGC 57.512 36.000 0.00 0.00 0.00 3.56
3305 10708 7.049754 TGAAGCTCTTAATAGTCATGATTGCA 58.950 34.615 0.00 0.00 0.00 4.08
3306 10709 7.718314 TGAAGCTCTTAATAGTCATGATTGCAT 59.282 33.333 0.00 0.00 34.29 3.96
3307 10710 8.461249 AAGCTCTTAATAGTCATGATTGCATT 57.539 30.769 0.00 0.00 30.68 3.56
3308 10711 8.097078 AGCTCTTAATAGTCATGATTGCATTC 57.903 34.615 0.00 1.55 30.68 2.67
3309 10712 7.174599 AGCTCTTAATAGTCATGATTGCATTCC 59.825 37.037 0.00 0.00 30.68 3.01
3310 10713 7.574592 GCTCTTAATAGTCATGATTGCATTCCC 60.575 40.741 0.00 0.00 30.68 3.97
3311 10714 7.520798 TCTTAATAGTCATGATTGCATTCCCT 58.479 34.615 0.00 0.00 30.68 4.20
3312 10715 7.663081 TCTTAATAGTCATGATTGCATTCCCTC 59.337 37.037 0.00 0.00 30.68 4.30
3313 10716 3.657398 AGTCATGATTGCATTCCCTCA 57.343 42.857 0.00 0.00 30.68 3.86
3314 10717 3.972133 AGTCATGATTGCATTCCCTCAA 58.028 40.909 0.00 0.00 30.68 3.02
3315 10718 4.346730 AGTCATGATTGCATTCCCTCAAA 58.653 39.130 0.00 0.00 30.68 2.69
3316 10719 4.773674 AGTCATGATTGCATTCCCTCAAAA 59.226 37.500 0.00 0.00 30.68 2.44
3317 10720 5.105473 AGTCATGATTGCATTCCCTCAAAAG 60.105 40.000 0.00 0.00 30.68 2.27
3318 10721 5.018149 TCATGATTGCATTCCCTCAAAAGA 58.982 37.500 6.16 0.00 30.68 2.52
3319 10722 5.481122 TCATGATTGCATTCCCTCAAAAGAA 59.519 36.000 6.16 0.00 30.68 2.52
3320 10723 5.804944 TGATTGCATTCCCTCAAAAGAAA 57.195 34.783 6.16 0.00 0.00 2.52
3432 10887 4.682320 GCCATTGGATGATGAGCACAAATT 60.682 41.667 6.95 0.00 0.00 1.82
3461 10916 0.873054 CCGTCAGTAGACACGTCAGT 59.127 55.000 0.00 0.00 45.23 3.41
3475 10930 3.650139 ACGTCAGTGATAGAAAGCGTTT 58.350 40.909 0.00 0.00 0.00 3.60
3531 10990 2.128507 CCCTCTACCGCCCTCACTC 61.129 68.421 0.00 0.00 0.00 3.51
3582 11325 4.580995 TCTCTTCTATCTCATTCCACGTCC 59.419 45.833 0.00 0.00 0.00 4.79
3601 11344 2.909965 GGCAGTCAAAACCCCGCA 60.910 61.111 0.00 0.00 0.00 5.69
3605 11357 1.898574 AGTCAAAACCCCGCAGCAG 60.899 57.895 0.00 0.00 0.00 4.24
3639 11391 0.528033 CAGAGTCATGCGAGCTCCTG 60.528 60.000 8.47 3.01 0.00 3.86
3640 11392 0.969917 AGAGTCATGCGAGCTCCTGT 60.970 55.000 8.47 0.00 0.00 4.00
3656 11408 1.081892 CTGTCCAGACGCCAAGAATG 58.918 55.000 0.00 0.00 0.00 2.67
3667 11419 1.078214 CAAGAATGAGGCCTCCGCA 60.078 57.895 29.95 13.04 37.78 5.69
3692 11445 2.888863 GGGCTGTCTCTCTCCGTG 59.111 66.667 0.00 0.00 0.00 4.94
3696 11449 0.963355 GCTGTCTCTCTCCGTGGACT 60.963 60.000 0.00 0.00 0.00 3.85
3726 11479 3.342627 CGTCGCGGGCAGTCAAAA 61.343 61.111 6.13 0.00 0.00 2.44
3727 11480 2.251371 GTCGCGGGCAGTCAAAAC 59.749 61.111 6.13 0.00 0.00 2.43
3728 11481 2.975799 TCGCGGGCAGTCAAAACC 60.976 61.111 6.13 0.00 0.00 3.27
3729 11482 4.038080 CGCGGGCAGTCAAAACCC 62.038 66.667 0.00 0.00 40.51 4.11
3730 11483 3.680786 GCGGGCAGTCAAAACCCC 61.681 66.667 0.00 0.00 40.86 4.95
3732 11485 3.680786 GGGCAGTCAAAACCCCGC 61.681 66.667 0.00 0.00 37.70 6.13
3733 11486 2.909965 GGCAGTCAAAACCCCGCA 60.910 61.111 0.00 0.00 0.00 5.69
3734 11487 2.644992 GCAGTCAAAACCCCGCAG 59.355 61.111 0.00 0.00 0.00 5.18
3735 11488 2.644992 CAGTCAAAACCCCGCAGC 59.355 61.111 0.00 0.00 0.00 5.25
3736 11489 2.192861 CAGTCAAAACCCCGCAGCA 61.193 57.895 0.00 0.00 0.00 4.41
3737 11490 1.898574 AGTCAAAACCCCGCAGCAG 60.899 57.895 0.00 0.00 0.00 4.24
3738 11491 3.294493 TCAAAACCCCGCAGCAGC 61.294 61.111 0.00 0.00 37.42 5.25
3739 11492 3.604667 CAAAACCCCGCAGCAGCA 61.605 61.111 0.82 0.00 42.27 4.41
3740 11493 2.837291 AAAACCCCGCAGCAGCAA 60.837 55.556 0.82 0.00 42.27 3.91
3741 11494 3.150647 AAAACCCCGCAGCAGCAAC 62.151 57.895 0.82 0.00 42.27 4.17
3747 11500 3.869272 CGCAGCAGCAACGGATCC 61.869 66.667 0.00 0.00 42.27 3.36
3748 11501 2.747460 GCAGCAGCAACGGATCCA 60.747 61.111 13.41 0.00 41.58 3.41
3749 11502 2.758089 GCAGCAGCAACGGATCCAG 61.758 63.158 13.41 7.30 41.58 3.86
3750 11503 1.078918 CAGCAGCAACGGATCCAGA 60.079 57.895 13.41 0.00 0.00 3.86
3751 11504 1.088340 CAGCAGCAACGGATCCAGAG 61.088 60.000 13.41 0.96 0.00 3.35
3752 11505 2.467826 GCAGCAACGGATCCAGAGC 61.468 63.158 13.41 11.69 0.00 4.09
3753 11506 1.078918 CAGCAACGGATCCAGAGCA 60.079 57.895 13.41 0.00 0.00 4.26
3754 11507 1.088340 CAGCAACGGATCCAGAGCAG 61.088 60.000 13.41 4.98 0.00 4.24
3755 11508 1.219124 GCAACGGATCCAGAGCAGA 59.781 57.895 13.41 0.00 0.00 4.26
3756 11509 0.809241 GCAACGGATCCAGAGCAGAG 60.809 60.000 13.41 0.00 0.00 3.35
3757 11510 0.534412 CAACGGATCCAGAGCAGAGT 59.466 55.000 13.41 0.00 0.00 3.24
3758 11511 0.820871 AACGGATCCAGAGCAGAGTC 59.179 55.000 13.41 0.00 0.00 3.36
3759 11512 0.323816 ACGGATCCAGAGCAGAGTCA 60.324 55.000 13.41 0.00 0.00 3.41
3760 11513 1.039068 CGGATCCAGAGCAGAGTCAT 58.961 55.000 13.41 0.00 0.00 3.06
3761 11514 1.269673 CGGATCCAGAGCAGAGTCATG 60.270 57.143 13.41 0.00 0.00 3.07
3762 11515 1.540797 GGATCCAGAGCAGAGTCATGC 60.541 57.143 6.95 6.49 46.88 4.06
3768 11521 3.703547 GCAGAGTCATGCGAGCTC 58.296 61.111 2.73 2.73 36.28 4.09
3769 11522 1.882167 GCAGAGTCATGCGAGCTCC 60.882 63.158 8.47 1.40 36.28 4.70
3770 11523 1.815196 CAGAGTCATGCGAGCTCCT 59.185 57.895 8.47 0.00 0.00 3.69
3771 11524 0.528033 CAGAGTCATGCGAGCTCCTG 60.528 60.000 8.47 3.01 0.00 3.86
3772 11525 0.969917 AGAGTCATGCGAGCTCCTGT 60.970 55.000 8.47 0.00 0.00 4.00
3773 11526 0.527385 GAGTCATGCGAGCTCCTGTC 60.527 60.000 8.47 1.76 0.00 3.51
3774 11527 1.520342 GTCATGCGAGCTCCTGTCC 60.520 63.158 8.47 0.00 0.00 4.02
3775 11528 1.984026 TCATGCGAGCTCCTGTCCA 60.984 57.895 8.47 0.00 0.00 4.02
3776 11529 1.521010 CATGCGAGCTCCTGTCCAG 60.521 63.158 8.47 0.00 0.00 3.86
3777 11530 1.683707 ATGCGAGCTCCTGTCCAGA 60.684 57.895 8.47 0.00 0.00 3.86
3778 11531 1.954362 ATGCGAGCTCCTGTCCAGAC 61.954 60.000 8.47 0.00 0.00 3.51
3779 11532 2.487428 CGAGCTCCTGTCCAGACG 59.513 66.667 8.47 0.00 0.00 4.18
3780 11533 2.183046 GAGCTCCTGTCCAGACGC 59.817 66.667 0.87 0.00 0.00 5.19
3781 11534 3.363844 GAGCTCCTGTCCAGACGCC 62.364 68.421 0.87 0.00 0.00 5.68
3782 11535 3.695606 GCTCCTGTCCAGACGCCA 61.696 66.667 0.00 0.00 0.00 5.69
3783 11536 3.059982 CTCCTGTCCAGACGCCAA 58.940 61.111 0.00 0.00 0.00 4.52
3784 11537 1.079543 CTCCTGTCCAGACGCCAAG 60.080 63.158 0.00 0.00 0.00 3.61
3785 11538 1.533033 TCCTGTCCAGACGCCAAGA 60.533 57.895 0.00 0.00 0.00 3.02
3786 11539 1.118965 TCCTGTCCAGACGCCAAGAA 61.119 55.000 0.00 0.00 0.00 2.52
3787 11540 0.036010 CCTGTCCAGACGCCAAGAAT 60.036 55.000 0.00 0.00 0.00 2.40
3788 11541 1.081892 CTGTCCAGACGCCAAGAATG 58.918 55.000 0.00 0.00 0.00 2.67
3789 11542 0.684535 TGTCCAGACGCCAAGAATGA 59.315 50.000 0.00 0.00 0.00 2.57
3790 11543 1.338105 TGTCCAGACGCCAAGAATGAG 60.338 52.381 0.00 0.00 0.00 2.90
3791 11544 0.250234 TCCAGACGCCAAGAATGAGG 59.750 55.000 0.00 0.00 0.00 3.86
3796 11549 4.249513 GCCAAGAATGAGGCCTCC 57.750 61.111 29.95 14.74 45.18 4.30
3797 11550 1.821332 GCCAAGAATGAGGCCTCCG 60.821 63.158 29.95 10.84 45.18 4.63
3798 11551 1.821332 CCAAGAATGAGGCCTCCGC 60.821 63.158 29.95 18.13 0.00 5.54
3799 11552 1.078214 CAAGAATGAGGCCTCCGCA 60.078 57.895 29.95 13.04 37.78 5.69
3800 11553 1.094073 CAAGAATGAGGCCTCCGCAG 61.094 60.000 29.95 11.10 36.65 5.18
3801 11554 2.883267 AAGAATGAGGCCTCCGCAGC 62.883 60.000 29.95 14.24 36.65 5.25
3802 11555 4.845580 AATGAGGCCTCCGCAGCG 62.846 66.667 29.95 8.18 36.65 5.18
3818 11571 4.200283 CGCTCCGGGCTGTCTCTC 62.200 72.222 0.00 0.00 39.13 3.20
3819 11572 2.757917 GCTCCGGGCTGTCTCTCT 60.758 66.667 0.00 0.00 38.06 3.10
3820 11573 2.781158 GCTCCGGGCTGTCTCTCTC 61.781 68.421 0.00 0.00 38.06 3.20
3821 11574 2.043852 TCCGGGCTGTCTCTCTCC 60.044 66.667 0.00 0.00 0.00 3.71
3822 11575 3.522731 CCGGGCTGTCTCTCTCCG 61.523 72.222 0.00 0.00 40.32 4.63
3823 11576 2.752238 CGGGCTGTCTCTCTCCGT 60.752 66.667 0.00 0.00 36.38 4.69
3824 11577 2.888863 GGGCTGTCTCTCTCCGTG 59.111 66.667 0.00 0.00 0.00 4.94
3825 11578 2.716017 GGGCTGTCTCTCTCCGTGG 61.716 68.421 0.00 0.00 0.00 4.94
3826 11579 1.679305 GGCTGTCTCTCTCCGTGGA 60.679 63.158 0.00 0.00 0.00 4.02
3827 11580 1.509004 GCTGTCTCTCTCCGTGGAC 59.491 63.158 0.00 0.00 0.00 4.02
3828 11581 0.963355 GCTGTCTCTCTCCGTGGACT 60.963 60.000 0.00 0.00 0.00 3.85
3829 11582 0.808125 CTGTCTCTCTCCGTGGACTG 59.192 60.000 0.00 0.00 0.00 3.51
3830 11583 0.609406 TGTCTCTCTCCGTGGACTGG 60.609 60.000 0.00 0.00 0.00 4.00
3831 11584 1.679305 TCTCTCTCCGTGGACTGGC 60.679 63.158 0.00 0.00 0.00 4.85
3832 11585 1.680651 CTCTCTCCGTGGACTGGCT 60.681 63.158 0.00 0.00 0.00 4.75
3833 11586 1.662438 CTCTCTCCGTGGACTGGCTC 61.662 65.000 0.00 0.00 0.00 4.70
3834 11587 3.057547 CTCTCCGTGGACTGGCTCG 62.058 68.421 0.00 0.00 0.00 5.03
3835 11588 3.062466 CTCCGTGGACTGGCTCGA 61.062 66.667 0.88 0.00 0.00 4.04
3836 11589 3.057547 CTCCGTGGACTGGCTCGAG 62.058 68.421 8.45 8.45 0.00 4.04
3837 11590 4.135153 CCGTGGACTGGCTCGAGG 62.135 72.222 15.58 0.00 0.00 4.63
3838 11591 3.374402 CGTGGACTGGCTCGAGGT 61.374 66.667 15.58 3.20 0.00 3.85
3839 11592 2.262915 GTGGACTGGCTCGAGGTG 59.737 66.667 15.58 0.00 0.00 4.00
3840 11593 3.695606 TGGACTGGCTCGAGGTGC 61.696 66.667 15.58 9.61 0.00 5.01
3901 11654 4.685628 GGCCGATGCAACATATATTTTTGG 59.314 41.667 0.00 0.00 40.13 3.28
3905 11658 8.240682 GCCGATGCAACATATATTTTTGGTATA 58.759 33.333 0.00 0.00 37.47 1.47
3938 11691 3.980646 TGTTGTGTCTTTGCCATGTAC 57.019 42.857 0.00 0.00 0.00 2.90
3939 11692 3.550820 TGTTGTGTCTTTGCCATGTACT 58.449 40.909 0.00 0.00 0.00 2.73
3940 11693 3.563808 TGTTGTGTCTTTGCCATGTACTC 59.436 43.478 0.00 0.00 0.00 2.59
3941 11694 2.778299 TGTGTCTTTGCCATGTACTCC 58.222 47.619 0.00 0.00 0.00 3.85
3942 11695 2.084546 GTGTCTTTGCCATGTACTCCC 58.915 52.381 0.00 0.00 0.00 4.30
3943 11696 1.985159 TGTCTTTGCCATGTACTCCCT 59.015 47.619 0.00 0.00 0.00 4.20
3944 11697 2.027192 TGTCTTTGCCATGTACTCCCTC 60.027 50.000 0.00 0.00 0.00 4.30
3945 11698 1.559682 TCTTTGCCATGTACTCCCTCC 59.440 52.381 0.00 0.00 0.00 4.30
3946 11699 0.623723 TTTGCCATGTACTCCCTCCC 59.376 55.000 0.00 0.00 0.00 4.30
3947 11700 0.253160 TTGCCATGTACTCCCTCCCT 60.253 55.000 0.00 0.00 0.00 4.20
3948 11701 0.253160 TGCCATGTACTCCCTCCCTT 60.253 55.000 0.00 0.00 0.00 3.95
3949 11702 0.470341 GCCATGTACTCCCTCCCTTC 59.530 60.000 0.00 0.00 0.00 3.46
3950 11703 1.132500 CCATGTACTCCCTCCCTTCC 58.868 60.000 0.00 0.00 0.00 3.46
3951 11704 0.753262 CATGTACTCCCTCCCTTCCG 59.247 60.000 0.00 0.00 0.00 4.30
3952 11705 0.635009 ATGTACTCCCTCCCTTCCGA 59.365 55.000 0.00 0.00 0.00 4.55
3953 11706 0.410663 TGTACTCCCTCCCTTCCGAA 59.589 55.000 0.00 0.00 0.00 4.30
3954 11707 1.007963 TGTACTCCCTCCCTTCCGAAT 59.992 52.381 0.00 0.00 0.00 3.34
3955 11708 2.117051 GTACTCCCTCCCTTCCGAATT 58.883 52.381 0.00 0.00 0.00 2.17
3956 11709 2.563039 ACTCCCTCCCTTCCGAATTA 57.437 50.000 0.00 0.00 0.00 1.40
3957 11710 3.061909 ACTCCCTCCCTTCCGAATTAT 57.938 47.619 0.00 0.00 0.00 1.28
3958 11711 3.394645 ACTCCCTCCCTTCCGAATTATT 58.605 45.455 0.00 0.00 0.00 1.40
3959 11712 3.786450 ACTCCCTCCCTTCCGAATTATTT 59.214 43.478 0.00 0.00 0.00 1.40
3960 11713 4.137543 CTCCCTCCCTTCCGAATTATTTG 58.862 47.826 0.00 0.00 0.00 2.32
3961 11714 3.526019 TCCCTCCCTTCCGAATTATTTGT 59.474 43.478 0.00 0.00 0.00 2.83
3962 11715 4.017867 TCCCTCCCTTCCGAATTATTTGTT 60.018 41.667 0.00 0.00 0.00 2.83
3963 11716 4.709886 CCCTCCCTTCCGAATTATTTGTTT 59.290 41.667 0.00 0.00 0.00 2.83
3964 11717 5.186992 CCCTCCCTTCCGAATTATTTGTTTT 59.813 40.000 0.00 0.00 0.00 2.43
3965 11718 6.099341 CCTCCCTTCCGAATTATTTGTTTTG 58.901 40.000 0.00 0.00 0.00 2.44
3966 11719 6.031751 TCCCTTCCGAATTATTTGTTTTGG 57.968 37.500 0.00 0.00 0.00 3.28
3967 11720 5.775701 TCCCTTCCGAATTATTTGTTTTGGA 59.224 36.000 0.00 0.00 0.00 3.53
3968 11721 6.439058 TCCCTTCCGAATTATTTGTTTTGGAT 59.561 34.615 0.00 0.00 0.00 3.41
3969 11722 7.038658 TCCCTTCCGAATTATTTGTTTTGGATT 60.039 33.333 0.00 0.00 0.00 3.01
3970 11723 7.606073 CCCTTCCGAATTATTTGTTTTGGATTT 59.394 33.333 0.00 0.00 0.00 2.17
3971 11724 8.442384 CCTTCCGAATTATTTGTTTTGGATTTG 58.558 33.333 0.00 0.00 0.00 2.32
3972 11725 8.894768 TTCCGAATTATTTGTTTTGGATTTGT 57.105 26.923 0.00 0.00 0.00 2.83
3973 11726 8.527567 TCCGAATTATTTGTTTTGGATTTGTC 57.472 30.769 0.00 0.00 0.00 3.18
3974 11727 8.364142 TCCGAATTATTTGTTTTGGATTTGTCT 58.636 29.630 0.00 0.00 0.00 3.41
3975 11728 9.632807 CCGAATTATTTGTTTTGGATTTGTCTA 57.367 29.630 0.00 0.00 0.00 2.59
3982 11735 8.610248 TTTGTTTTGGATTTGTCTAGATACGA 57.390 30.769 0.00 0.00 0.00 3.43
3983 11736 8.610248 TTGTTTTGGATTTGTCTAGATACGAA 57.390 30.769 0.00 0.00 0.00 3.85
3984 11737 8.786826 TGTTTTGGATTTGTCTAGATACGAAT 57.213 30.769 0.00 0.00 36.39 3.34
3985 11738 8.664798 TGTTTTGGATTTGTCTAGATACGAATG 58.335 33.333 0.00 0.00 34.30 2.67
3986 11739 8.665685 GTTTTGGATTTGTCTAGATACGAATGT 58.334 33.333 0.00 0.00 34.30 2.71
3987 11740 9.878667 TTTTGGATTTGTCTAGATACGAATGTA 57.121 29.630 0.00 0.00 34.30 2.29
4016 11769 8.950208 AAACTCATTTTAGTGCTAGATACCTC 57.050 34.615 0.00 0.00 0.00 3.85
4017 11770 7.056844 ACTCATTTTAGTGCTAGATACCTCC 57.943 40.000 0.00 0.00 0.00 4.30
4018 11771 6.085555 TCATTTTAGTGCTAGATACCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
4019 11772 5.597182 TCATTTTAGTGCTAGATACCTCCGT 59.403 40.000 0.00 0.00 0.00 4.69
4020 11773 6.774170 TCATTTTAGTGCTAGATACCTCCGTA 59.226 38.462 0.00 0.00 0.00 4.02
4021 11774 7.450634 TCATTTTAGTGCTAGATACCTCCGTAT 59.549 37.037 0.00 0.00 37.92 3.06
4033 11786 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
4034 11787 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
4035 11788 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
4036 11789 9.756571 ATACCTCCGTATCTAGACAAATCTAAT 57.243 33.333 0.00 0.00 36.98 1.73
4038 11791 9.012161 ACCTCCGTATCTAGACAAATCTAATAC 57.988 37.037 0.00 0.00 36.98 1.89
4039 11792 9.011095 CCTCCGTATCTAGACAAATCTAATACA 57.989 37.037 0.00 0.00 36.98 2.29
4056 11809 9.751542 ATCTAATACAAGTAATTCGGAACAGAG 57.248 33.333 0.00 0.00 0.00 3.35
4057 11810 8.195436 TCTAATACAAGTAATTCGGAACAGAGG 58.805 37.037 0.00 0.00 0.00 3.69
4058 11811 3.939066 ACAAGTAATTCGGAACAGAGGG 58.061 45.455 0.00 0.00 0.00 4.30
4059 11812 3.581332 ACAAGTAATTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4060 11813 4.184629 CAAGTAATTCGGAACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
4061 11814 3.442076 AGTAATTCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
4062 11815 4.607239 AGTAATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
4063 11816 5.209659 AGTAATTCGGAACAGAGGGAGTAT 58.790 41.667 0.00 0.00 0.00 2.12
4064 11817 6.371278 AGTAATTCGGAACAGAGGGAGTATA 58.629 40.000 0.00 0.00 0.00 1.47
4065 11818 7.011382 AGTAATTCGGAACAGAGGGAGTATAT 58.989 38.462 0.00 0.00 0.00 0.86
4066 11819 6.749036 AATTCGGAACAGAGGGAGTATATT 57.251 37.500 0.00 0.00 0.00 1.28
4067 11820 5.786264 TTCGGAACAGAGGGAGTATATTC 57.214 43.478 0.00 0.00 0.00 1.75
4068 11821 5.063017 TCGGAACAGAGGGAGTATATTCT 57.937 43.478 0.00 0.00 0.00 2.40
4069 11822 5.455872 TCGGAACAGAGGGAGTATATTCTT 58.544 41.667 0.00 0.00 0.00 2.52
4070 11823 5.302059 TCGGAACAGAGGGAGTATATTCTTG 59.698 44.000 0.00 0.00 0.00 3.02
4071 11824 5.301555 GGAACAGAGGGAGTATATTCTTGC 58.698 45.833 0.00 0.00 0.00 4.01
4072 11825 5.163301 GGAACAGAGGGAGTATATTCTTGCA 60.163 44.000 0.00 0.00 0.00 4.08
4073 11826 6.465035 GGAACAGAGGGAGTATATTCTTGCAT 60.465 42.308 0.00 0.00 0.00 3.96
4074 11827 7.256332 GGAACAGAGGGAGTATATTCTTGCATA 60.256 40.741 0.00 0.00 0.00 3.14
4075 11828 7.805083 ACAGAGGGAGTATATTCTTGCATAT 57.195 36.000 0.00 0.00 0.00 1.78
4076 11829 8.212259 ACAGAGGGAGTATATTCTTGCATATT 57.788 34.615 0.00 0.00 0.00 1.28
4077 11830 9.326489 ACAGAGGGAGTATATTCTTGCATATTA 57.674 33.333 0.00 0.00 0.00 0.98
4112 11865 6.018098 CCAACTTCTTTGTAAATTGCATGCAA 60.018 34.615 33.57 33.57 35.43 4.08
4113 11866 7.408123 CAACTTCTTTGTAAATTGCATGCAAA 58.592 30.769 34.84 17.82 39.55 3.68
4114 11867 7.551035 ACTTCTTTGTAAATTGCATGCAAAA 57.449 28.000 34.84 21.78 39.55 2.44
4115 11868 7.983307 ACTTCTTTGTAAATTGCATGCAAAAA 58.017 26.923 34.84 26.46 39.55 1.94
4164 11917 8.918202 TTCTTTCTTCTTAAAGAGCAATACCA 57.082 30.769 0.00 0.00 44.15 3.25
4165 11918 8.918202 TCTTTCTTCTTAAAGAGCAATACCAA 57.082 30.769 0.00 0.00 42.36 3.67
4166 11919 9.520515 TCTTTCTTCTTAAAGAGCAATACCAAT 57.479 29.630 0.00 0.00 42.36 3.16
4167 11920 9.565213 CTTTCTTCTTAAAGAGCAATACCAATG 57.435 33.333 0.00 0.00 42.36 2.82
4168 11921 8.635765 TTCTTCTTAAAGAGCAATACCAATGT 57.364 30.769 0.00 0.00 42.36 2.71
4169 11922 8.268850 TCTTCTTAAAGAGCAATACCAATGTC 57.731 34.615 0.00 0.00 36.59 3.06
4170 11923 7.882791 TCTTCTTAAAGAGCAATACCAATGTCA 59.117 33.333 0.00 0.00 36.59 3.58
4171 11924 7.377766 TCTTAAAGAGCAATACCAATGTCAC 57.622 36.000 0.00 0.00 0.00 3.67
4172 11925 7.168219 TCTTAAAGAGCAATACCAATGTCACT 58.832 34.615 0.00 0.00 0.00 3.41
4173 11926 8.318412 TCTTAAAGAGCAATACCAATGTCACTA 58.682 33.333 0.00 0.00 0.00 2.74
4174 11927 8.856153 TTAAAGAGCAATACCAATGTCACTAA 57.144 30.769 0.00 0.00 0.00 2.24
4175 11928 7.944729 AAAGAGCAATACCAATGTCACTAAT 57.055 32.000 0.00 0.00 0.00 1.73
4176 11929 7.944729 AAGAGCAATACCAATGTCACTAATT 57.055 32.000 0.00 0.00 0.00 1.40
4177 11930 7.944729 AGAGCAATACCAATGTCACTAATTT 57.055 32.000 0.00 0.00 0.00 1.82
4178 11931 9.461312 AAGAGCAATACCAATGTCACTAATTTA 57.539 29.630 0.00 0.00 0.00 1.40
4179 11932 9.632638 AGAGCAATACCAATGTCACTAATTTAT 57.367 29.630 0.00 0.00 0.00 1.40
4180 11933 9.884465 GAGCAATACCAATGTCACTAATTTATC 57.116 33.333 0.00 0.00 0.00 1.75
4181 11934 8.850156 AGCAATACCAATGTCACTAATTTATCC 58.150 33.333 0.00 0.00 0.00 2.59
4182 11935 8.082242 GCAATACCAATGTCACTAATTTATCCC 58.918 37.037 0.00 0.00 0.00 3.85
4183 11936 9.130661 CAATACCAATGTCACTAATTTATCCCA 57.869 33.333 0.00 0.00 0.00 4.37
4184 11937 9.707957 AATACCAATGTCACTAATTTATCCCAA 57.292 29.630 0.00 0.00 0.00 4.12
4185 11938 7.645058 ACCAATGTCACTAATTTATCCCAAG 57.355 36.000 0.00 0.00 0.00 3.61
4186 11939 7.182060 ACCAATGTCACTAATTTATCCCAAGT 58.818 34.615 0.00 0.00 0.00 3.16
4187 11940 8.333235 ACCAATGTCACTAATTTATCCCAAGTA 58.667 33.333 0.00 0.00 0.00 2.24
4188 11941 9.184523 CCAATGTCACTAATTTATCCCAAGTAA 57.815 33.333 0.00 0.00 0.00 2.24
4192 11945 9.967451 TGTCACTAATTTATCCCAAGTAATGAA 57.033 29.630 0.00 0.00 0.00 2.57
4228 11981 9.527157 TTCATTATTTGTTTCTTAGTGGGATGA 57.473 29.630 0.00 0.00 0.00 2.92
4229 11982 9.527157 TCATTATTTGTTTCTTAGTGGGATGAA 57.473 29.630 0.00 0.00 0.00 2.57
4234 11987 8.934023 TTTGTTTCTTAGTGGGATGAATTAGT 57.066 30.769 0.00 0.00 0.00 2.24
4235 11988 7.921786 TGTTTCTTAGTGGGATGAATTAGTG 57.078 36.000 0.00 0.00 0.00 2.74
4236 11989 7.685481 TGTTTCTTAGTGGGATGAATTAGTGA 58.315 34.615 0.00 0.00 0.00 3.41
4237 11990 7.606456 TGTTTCTTAGTGGGATGAATTAGTGAC 59.394 37.037 0.00 0.00 0.00 3.67
4238 11991 6.867519 TCTTAGTGGGATGAATTAGTGACA 57.132 37.500 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.561037 CCCACAGTTTCAACGCCCC 61.561 63.158 0.00 0.00 0.00 5.80
25 26 4.642885 TCCACGGAATTTGTAATTCATCCC 59.357 41.667 12.63 0.00 0.00 3.85
44 45 3.555817 CGTTACGCGTCATTTCCAC 57.444 52.632 18.63 1.27 35.54 4.02
67 79 4.271776 GGTTGCATAGTTGGGATTACGTAC 59.728 45.833 0.00 0.00 0.00 3.67
151 165 8.083828 TGCTTCTTACCTCTTCTGAATCTATT 57.916 34.615 0.00 0.00 0.00 1.73
153 167 7.667575 ATGCTTCTTACCTCTTCTGAATCTA 57.332 36.000 0.00 0.00 0.00 1.98
196 230 6.328410 TCTGAATCTATTGGATCTGATGGTGT 59.672 38.462 0.00 0.00 32.76 4.16
281 317 9.817809 GTTTTTCCTCAAAAAGGTTTCTTATCT 57.182 29.630 0.00 0.00 46.32 1.98
282 318 9.594478 TGTTTTTCCTCAAAAAGGTTTCTTATC 57.406 29.630 0.00 0.00 46.32 1.75
306 343 1.780503 AAAGAAACCAAGGCTGCTGT 58.219 45.000 0.00 0.00 0.00 4.40
423 468 4.256920 TGCTCAATTGAGTTAGCTCTTCC 58.743 43.478 30.88 14.30 43.85 3.46
520 565 8.646004 AGATTGATACTACAGTAGTACTCCGTA 58.354 37.037 20.68 1.36 43.46 4.02
523 568 7.937942 TCCAGATTGATACTACAGTAGTACTCC 59.062 40.741 20.68 13.71 43.46 3.85
680 3539 3.369576 GCCGGAAAGGAGACTGAAGTTAT 60.370 47.826 5.05 0.00 45.00 1.89
681 3540 2.028385 GCCGGAAAGGAGACTGAAGTTA 60.028 50.000 5.05 0.00 45.00 2.24
684 3543 0.737715 CGCCGGAAAGGAGACTGAAG 60.738 60.000 5.05 0.00 43.02 3.02
751 3624 1.860950 CGGATCATTGCGTCTACAAGG 59.139 52.381 0.00 0.00 31.96 3.61
858 3734 2.031012 CACGACTCTGCAAGGCCA 59.969 61.111 5.01 0.00 0.00 5.36
1002 3904 2.357881 TGCTCCGTCTGCTGCTTG 60.358 61.111 0.00 0.00 0.00 4.01
1003 3905 2.047465 CTGCTCCGTCTGCTGCTT 60.047 61.111 0.00 0.00 0.00 3.91
1004 3906 4.756458 GCTGCTCCGTCTGCTGCT 62.756 66.667 0.00 0.00 46.79 4.24
1006 3908 2.814341 CTGCTGCTCCGTCTGCTG 60.814 66.667 0.00 0.00 32.95 4.41
1007 3909 4.756458 GCTGCTGCTCCGTCTGCT 62.756 66.667 8.53 0.00 36.03 4.24
1009 3911 3.889134 TTGGCTGCTGCTCCGTCTG 62.889 63.158 15.64 0.00 39.59 3.51
1010 3912 3.182590 TTTGGCTGCTGCTCCGTCT 62.183 57.895 15.64 0.00 39.59 4.18
1011 3913 2.669569 TTTGGCTGCTGCTCCGTC 60.670 61.111 15.64 0.00 39.59 4.79
1012 3914 2.670934 CTTTGGCTGCTGCTCCGT 60.671 61.111 15.64 0.00 39.59 4.69
1013 3915 4.112341 GCTTTGGCTGCTGCTCCG 62.112 66.667 15.64 3.37 39.59 4.63
1014 3916 2.987547 TGCTTTGGCTGCTGCTCC 60.988 61.111 15.64 2.78 39.59 4.70
1015 3917 1.803366 AACTGCTTTGGCTGCTGCTC 61.803 55.000 15.64 6.34 40.37 4.26
1016 3918 1.803366 GAACTGCTTTGGCTGCTGCT 61.803 55.000 15.64 0.00 40.37 4.24
1017 3919 1.372623 GAACTGCTTTGGCTGCTGC 60.373 57.895 7.10 7.10 40.37 5.25
1039 3960 0.809241 CAAGGCTAGCTCGCTTCCTG 60.809 60.000 15.72 0.00 31.42 3.86
1057 3978 4.097892 GCCTGTGAACTTTTTCTTTCTCCA 59.902 41.667 0.00 0.00 32.36 3.86
1059 3980 4.097892 TGGCCTGTGAACTTTTTCTTTCTC 59.902 41.667 3.32 0.00 32.36 2.87
1060 3981 4.023291 TGGCCTGTGAACTTTTTCTTTCT 58.977 39.130 3.32 0.00 32.36 2.52
1061 3982 4.112634 GTGGCCTGTGAACTTTTTCTTTC 58.887 43.478 3.32 0.00 32.36 2.62
1062 3983 3.769300 AGTGGCCTGTGAACTTTTTCTTT 59.231 39.130 3.32 0.00 32.36 2.52
1063 3984 3.365472 AGTGGCCTGTGAACTTTTTCTT 58.635 40.909 3.32 0.00 32.36 2.52
1064 3985 3.018423 AGTGGCCTGTGAACTTTTTCT 57.982 42.857 3.32 0.00 32.36 2.52
1067 3988 2.031870 GGAAGTGGCCTGTGAACTTTT 58.968 47.619 3.32 0.00 34.37 2.27
1068 3989 1.692411 GGAAGTGGCCTGTGAACTTT 58.308 50.000 3.32 0.00 34.37 2.66
1069 3990 0.535102 CGGAAGTGGCCTGTGAACTT 60.535 55.000 3.32 4.41 36.87 2.66
1070 3991 1.071471 CGGAAGTGGCCTGTGAACT 59.929 57.895 3.32 0.00 0.00 3.01
1071 3992 2.617274 GCGGAAGTGGCCTGTGAAC 61.617 63.158 3.32 0.00 0.00 3.18
1079 4000 1.452145 TTGTTGGAAGCGGAAGTGGC 61.452 55.000 0.00 0.00 0.00 5.01
1172 6388 1.202651 AGGGAGGCAATTAATCGACGG 60.203 52.381 0.00 0.00 0.00 4.79
1225 6754 3.308323 GGAGACAGAATGCAGAAATCGTC 59.692 47.826 0.00 0.00 42.53 4.20
1228 6757 8.284665 TGCAATGGAGACAGAATGCAGAAATC 62.285 42.308 0.00 0.00 46.64 2.17
1270 6799 5.371526 CTGCAGGCTATTATCCTCTTGAAA 58.628 41.667 5.57 0.00 0.00 2.69
1296 6825 4.704833 TTGAGGAGCGGCACCTGC 62.705 66.667 23.87 14.66 37.93 4.85
1297 6826 2.435586 CTTGAGGAGCGGCACCTG 60.436 66.667 23.87 5.80 37.93 4.00
1330 6865 4.591399 TGCTGGTGCCTTGCTGCT 62.591 61.111 0.00 0.00 38.71 4.24
1476 7078 1.353103 GGAGATGCCATTGAACGCG 59.647 57.895 3.53 3.53 36.34 6.01
1614 7216 0.768221 AGTTGCCCCAGAAGGAGTCA 60.768 55.000 0.00 0.00 38.24 3.41
1656 7258 1.748122 GCCGAGGAGGTAGACGACA 60.748 63.158 0.00 0.00 43.70 4.35
1795 7397 2.367202 CCACGAGGTACAGCCCCAT 61.367 63.158 0.00 0.00 38.26 4.00
1905 7507 3.008049 GGTAGAACCAGCTGAAGAAGGAA 59.992 47.826 17.39 0.00 38.42 3.36
2037 7639 4.980805 AGCACGAAGGCGGCGAAA 62.981 61.111 12.98 0.00 43.17 3.46
2136 7738 3.698040 CAGGCACCTTAATGCTGATCTTT 59.302 43.478 1.33 0.00 45.38 2.52
2157 7759 1.896660 GAGGTGTTTGGCTTCGGCA 60.897 57.895 0.00 0.00 43.96 5.69
2201 7803 4.113815 CGATCTTGGGCTGGGGCA 62.114 66.667 0.00 0.00 40.87 5.36
2259 7861 1.153823 CATGTCCGACTCCGTGACC 60.154 63.158 0.00 0.00 36.12 4.02
2401 8003 1.841663 AACGTGGTGTTCATCTGCGC 61.842 55.000 0.00 0.00 35.27 6.09
2493 8095 1.135915 GTCATGACGCAGATCACCTCT 59.864 52.381 10.69 0.00 33.14 3.69
2718 8328 1.002087 CCGGCAAGGAAGAAGTACTGT 59.998 52.381 0.00 0.00 45.00 3.55
3003 8613 2.353704 CCTGTAGTTCTTGACGATGCCA 60.354 50.000 0.00 0.00 0.00 4.92
3177 9007 9.903682 TGTACTACGCTATATCTTACAATTTCC 57.096 33.333 0.00 0.00 0.00 3.13
3239 10466 5.009631 CGGAGGAAATGAATGGGCATAATA 58.990 41.667 0.00 0.00 0.00 0.98
3282 10685 8.461249 AATGCAATCATGACTATTAAGAGCTT 57.539 30.769 0.00 0.00 32.23 3.74
3283 10686 7.174599 GGAATGCAATCATGACTATTAAGAGCT 59.825 37.037 3.77 0.00 32.23 4.09
3284 10687 7.303998 GGAATGCAATCATGACTATTAAGAGC 58.696 38.462 3.77 0.00 32.23 4.09
3285 10688 7.664731 AGGGAATGCAATCATGACTATTAAGAG 59.335 37.037 3.77 0.00 32.23 2.85
3286 10689 7.520798 AGGGAATGCAATCATGACTATTAAGA 58.479 34.615 3.77 0.00 32.23 2.10
3287 10690 7.446319 TGAGGGAATGCAATCATGACTATTAAG 59.554 37.037 3.77 0.00 32.23 1.85
3288 10691 7.289310 TGAGGGAATGCAATCATGACTATTAA 58.711 34.615 3.77 0.00 32.23 1.40
3289 10692 6.840527 TGAGGGAATGCAATCATGACTATTA 58.159 36.000 3.77 0.00 32.23 0.98
3290 10693 5.698104 TGAGGGAATGCAATCATGACTATT 58.302 37.500 3.77 0.00 32.23 1.73
3291 10694 5.314718 TGAGGGAATGCAATCATGACTAT 57.685 39.130 3.77 0.00 32.23 2.12
3292 10695 4.776435 TGAGGGAATGCAATCATGACTA 57.224 40.909 3.77 0.00 32.23 2.59
3293 10696 3.657398 TGAGGGAATGCAATCATGACT 57.343 42.857 3.77 0.00 32.23 3.41
3294 10697 4.724074 TTTGAGGGAATGCAATCATGAC 57.276 40.909 3.77 0.00 32.23 3.06
3295 10698 5.018149 TCTTTTGAGGGAATGCAATCATGA 58.982 37.500 3.77 0.00 32.23 3.07
3296 10699 5.333299 TCTTTTGAGGGAATGCAATCATG 57.667 39.130 3.77 0.00 32.23 3.07
3297 10700 6.363167 TTTCTTTTGAGGGAATGCAATCAT 57.637 33.333 3.77 0.00 33.53 2.45
3298 10701 5.804944 TTTCTTTTGAGGGAATGCAATCA 57.195 34.783 3.77 0.00 0.00 2.57
3299 10702 6.347969 GCTTTTTCTTTTGAGGGAATGCAATC 60.348 38.462 0.00 0.00 0.00 2.67
3300 10703 5.471116 GCTTTTTCTTTTGAGGGAATGCAAT 59.529 36.000 0.00 0.00 0.00 3.56
3301 10704 4.815846 GCTTTTTCTTTTGAGGGAATGCAA 59.184 37.500 0.00 0.00 0.00 4.08
3302 10705 4.101430 AGCTTTTTCTTTTGAGGGAATGCA 59.899 37.500 0.00 0.00 0.00 3.96
3303 10706 4.635223 AGCTTTTTCTTTTGAGGGAATGC 58.365 39.130 0.00 0.00 0.00 3.56
3304 10707 6.094193 AGAGCTTTTTCTTTTGAGGGAATG 57.906 37.500 0.00 0.00 0.00 2.67
3305 10708 6.737720 AAGAGCTTTTTCTTTTGAGGGAAT 57.262 33.333 0.00 0.00 33.74 3.01
3306 10709 7.654022 TTAAGAGCTTTTTCTTTTGAGGGAA 57.346 32.000 0.00 0.00 38.35 3.97
3307 10710 7.839680 ATTAAGAGCTTTTTCTTTTGAGGGA 57.160 32.000 0.00 0.00 38.35 4.20
3308 10711 8.797438 ACTATTAAGAGCTTTTTCTTTTGAGGG 58.203 33.333 0.00 0.00 38.35 4.30
3309 10712 9.833182 GACTATTAAGAGCTTTTTCTTTTGAGG 57.167 33.333 0.00 0.00 38.35 3.86
3461 10916 1.083489 CGGGCAAACGCTTTCTATCA 58.917 50.000 0.00 0.00 0.00 2.15
3475 10930 3.838271 GAGGCGTGAGATCGGGCA 61.838 66.667 5.72 0.00 0.00 5.36
3531 10990 6.647067 GGACGAGTGAAAATGGATAAGATAGG 59.353 42.308 0.00 0.00 0.00 2.57
3582 11325 3.361977 CGGGGTTTTGACTGCCGG 61.362 66.667 0.00 0.00 0.00 6.13
3601 11344 1.220206 CTCTGGATCCGTTGCTGCT 59.780 57.895 7.39 0.00 0.00 4.24
3605 11357 0.809241 CTCTGCTCTGGATCCGTTGC 60.809 60.000 7.39 11.15 0.00 4.17
3639 11391 1.363744 CTCATTCTTGGCGTCTGGAC 58.636 55.000 0.00 0.00 0.00 4.02
3640 11392 0.250234 CCTCATTCTTGGCGTCTGGA 59.750 55.000 0.00 0.00 0.00 3.86
3719 11472 1.898574 CTGCTGCGGGGTTTTGACT 60.899 57.895 0.00 0.00 0.00 3.41
3720 11473 2.644992 CTGCTGCGGGGTTTTGAC 59.355 61.111 0.00 0.00 0.00 3.18
3721 11474 3.294493 GCTGCTGCGGGGTTTTGA 61.294 61.111 10.99 0.00 0.00 2.69
3722 11475 3.149338 TTGCTGCTGCGGGGTTTTG 62.149 57.895 10.99 0.00 43.34 2.44
3723 11476 2.837291 TTGCTGCTGCGGGGTTTT 60.837 55.556 10.99 0.00 43.34 2.43
3724 11477 3.605664 GTTGCTGCTGCGGGGTTT 61.606 61.111 10.99 0.00 43.34 3.27
3729 11482 3.869272 GATCCGTTGCTGCTGCGG 61.869 66.667 22.54 22.54 46.12 5.69
3730 11483 3.869272 GGATCCGTTGCTGCTGCG 61.869 66.667 11.21 5.34 43.34 5.18
3731 11484 2.747460 TGGATCCGTTGCTGCTGC 60.747 61.111 7.39 8.89 40.20 5.25
3732 11485 1.078918 TCTGGATCCGTTGCTGCTG 60.079 57.895 7.39 0.00 0.00 4.41
3733 11486 1.220206 CTCTGGATCCGTTGCTGCT 59.780 57.895 7.39 0.00 0.00 4.24
3734 11487 2.467826 GCTCTGGATCCGTTGCTGC 61.468 63.158 7.39 1.91 0.00 5.25
3735 11488 1.078918 TGCTCTGGATCCGTTGCTG 60.079 57.895 18.87 4.13 0.00 4.41
3736 11489 1.220206 CTGCTCTGGATCCGTTGCT 59.780 57.895 18.87 0.00 0.00 3.91
3737 11490 0.809241 CTCTGCTCTGGATCCGTTGC 60.809 60.000 7.39 11.15 0.00 4.17
3738 11491 0.534412 ACTCTGCTCTGGATCCGTTG 59.466 55.000 7.39 0.00 0.00 4.10
3739 11492 0.820871 GACTCTGCTCTGGATCCGTT 59.179 55.000 7.39 0.00 0.00 4.44
3740 11493 0.323816 TGACTCTGCTCTGGATCCGT 60.324 55.000 7.39 0.00 0.00 4.69
3741 11494 1.039068 ATGACTCTGCTCTGGATCCG 58.961 55.000 7.39 2.06 0.00 4.18
3742 11495 1.540797 GCATGACTCTGCTCTGGATCC 60.541 57.143 4.20 4.20 39.12 3.36
3743 11496 1.868469 GCATGACTCTGCTCTGGATC 58.132 55.000 0.00 0.00 39.12 3.36
3744 11497 0.104487 CGCATGACTCTGCTCTGGAT 59.896 55.000 0.00 0.00 40.06 3.41
3745 11498 0.967380 TCGCATGACTCTGCTCTGGA 60.967 55.000 0.00 0.00 40.06 3.86
3746 11499 0.528033 CTCGCATGACTCTGCTCTGG 60.528 60.000 0.00 0.00 40.06 3.86
3747 11500 1.146957 GCTCGCATGACTCTGCTCTG 61.147 60.000 0.00 0.00 40.06 3.35
3748 11501 1.141449 GCTCGCATGACTCTGCTCT 59.859 57.895 0.00 0.00 40.06 4.09
3749 11502 0.871163 GAGCTCGCATGACTCTGCTC 60.871 60.000 0.00 3.96 40.06 4.26
3750 11503 1.141449 GAGCTCGCATGACTCTGCT 59.859 57.895 0.00 0.00 40.06 4.24
3751 11504 1.882167 GGAGCTCGCATGACTCTGC 60.882 63.158 7.83 0.00 38.81 4.26
3752 11505 0.528033 CAGGAGCTCGCATGACTCTG 60.528 60.000 7.83 2.79 0.00 3.35
3753 11506 0.969917 ACAGGAGCTCGCATGACTCT 60.970 55.000 16.40 0.00 0.00 3.24
3754 11507 0.527385 GACAGGAGCTCGCATGACTC 60.527 60.000 16.40 0.00 0.00 3.36
3755 11508 1.515020 GACAGGAGCTCGCATGACT 59.485 57.895 16.40 1.13 0.00 3.41
3756 11509 1.520342 GGACAGGAGCTCGCATGAC 60.520 63.158 16.40 11.17 0.00 3.06
3757 11510 1.953231 CTGGACAGGAGCTCGCATGA 61.953 60.000 16.40 0.00 0.00 3.07
3758 11511 1.521010 CTGGACAGGAGCTCGCATG 60.521 63.158 7.83 9.03 0.00 4.06
3759 11512 1.683707 TCTGGACAGGAGCTCGCAT 60.684 57.895 7.83 0.00 0.00 4.73
3760 11513 2.283173 TCTGGACAGGAGCTCGCA 60.283 61.111 7.83 0.00 0.00 5.10
3761 11514 2.183046 GTCTGGACAGGAGCTCGC 59.817 66.667 7.83 0.47 0.00 5.03
3762 11515 2.487428 CGTCTGGACAGGAGCTCG 59.513 66.667 7.83 0.00 0.00 5.03
3763 11516 2.183046 GCGTCTGGACAGGAGCTC 59.817 66.667 4.71 4.71 0.00 4.09
3764 11517 3.386237 GGCGTCTGGACAGGAGCT 61.386 66.667 15.41 0.00 33.86 4.09
3765 11518 3.240134 TTGGCGTCTGGACAGGAGC 62.240 63.158 10.07 10.07 32.99 4.70
3766 11519 1.079543 CTTGGCGTCTGGACAGGAG 60.080 63.158 0.00 0.00 32.99 3.69
3767 11520 1.118965 TTCTTGGCGTCTGGACAGGA 61.119 55.000 0.00 0.00 38.12 3.86
3768 11521 0.036010 ATTCTTGGCGTCTGGACAGG 60.036 55.000 0.00 0.00 32.99 4.00
3769 11522 1.081892 CATTCTTGGCGTCTGGACAG 58.918 55.000 1.63 0.00 32.99 3.51
3770 11523 0.684535 TCATTCTTGGCGTCTGGACA 59.315 50.000 1.63 0.00 0.00 4.02
3771 11524 1.363744 CTCATTCTTGGCGTCTGGAC 58.636 55.000 0.00 0.00 0.00 4.02
3772 11525 0.250234 CCTCATTCTTGGCGTCTGGA 59.750 55.000 0.00 0.00 0.00 3.86
3773 11526 1.372087 GCCTCATTCTTGGCGTCTGG 61.372 60.000 0.00 0.00 39.71 3.86
3774 11527 2.093216 GCCTCATTCTTGGCGTCTG 58.907 57.895 0.00 0.00 39.71 3.51
3775 11528 4.625800 GCCTCATTCTTGGCGTCT 57.374 55.556 0.00 0.00 39.71 4.18
3780 11533 1.821332 GCGGAGGCCTCATTCTTGG 60.821 63.158 33.29 13.73 0.00 3.61
3781 11534 1.078214 TGCGGAGGCCTCATTCTTG 60.078 57.895 33.29 15.91 38.85 3.02
3782 11535 1.222936 CTGCGGAGGCCTCATTCTT 59.777 57.895 33.29 0.00 38.85 2.52
3783 11536 2.906458 CTGCGGAGGCCTCATTCT 59.094 61.111 33.29 0.00 38.85 2.40
3784 11537 2.899339 GCTGCGGAGGCCTCATTC 60.899 66.667 33.29 20.75 38.85 2.67
3785 11538 4.845580 CGCTGCGGAGGCCTCATT 62.846 66.667 33.29 0.00 38.85 2.57
3802 11555 2.757917 AGAGAGACAGCCCGGAGC 60.758 66.667 0.73 4.57 44.25 4.70
3803 11556 2.124693 GGAGAGAGACAGCCCGGAG 61.125 68.421 0.73 0.00 0.00 4.63
3804 11557 2.043852 GGAGAGAGACAGCCCGGA 60.044 66.667 0.73 0.00 0.00 5.14
3805 11558 3.522731 CGGAGAGAGACAGCCCGG 61.523 72.222 0.00 0.00 36.81 5.73
3806 11559 2.752238 ACGGAGAGAGACAGCCCG 60.752 66.667 0.00 0.00 45.09 6.13
3807 11560 2.716017 CCACGGAGAGAGACAGCCC 61.716 68.421 0.00 0.00 0.00 5.19
3808 11561 1.679305 TCCACGGAGAGAGACAGCC 60.679 63.158 0.00 0.00 0.00 4.85
3809 11562 0.963355 AGTCCACGGAGAGAGACAGC 60.963 60.000 0.00 0.00 32.01 4.40
3810 11563 0.808125 CAGTCCACGGAGAGAGACAG 59.192 60.000 0.00 0.00 32.01 3.51
3811 11564 0.609406 CCAGTCCACGGAGAGAGACA 60.609 60.000 0.00 0.00 32.01 3.41
3812 11565 1.939769 GCCAGTCCACGGAGAGAGAC 61.940 65.000 0.00 0.00 0.00 3.36
3813 11566 1.679305 GCCAGTCCACGGAGAGAGA 60.679 63.158 0.00 0.00 0.00 3.10
3814 11567 1.662438 GAGCCAGTCCACGGAGAGAG 61.662 65.000 0.00 0.00 0.00 3.20
3815 11568 1.679305 GAGCCAGTCCACGGAGAGA 60.679 63.158 0.00 0.00 0.00 3.10
3816 11569 2.888863 GAGCCAGTCCACGGAGAG 59.111 66.667 0.00 0.00 0.00 3.20
3817 11570 3.062466 CGAGCCAGTCCACGGAGA 61.062 66.667 0.00 0.00 0.00 3.71
3818 11571 3.057547 CTCGAGCCAGTCCACGGAG 62.058 68.421 0.00 0.00 0.00 4.63
3819 11572 3.062466 CTCGAGCCAGTCCACGGA 61.062 66.667 0.00 0.00 0.00 4.69
3820 11573 4.135153 CCTCGAGCCAGTCCACGG 62.135 72.222 6.99 0.00 0.00 4.94
3821 11574 3.374402 ACCTCGAGCCAGTCCACG 61.374 66.667 6.99 0.00 0.00 4.94
3822 11575 2.262915 CACCTCGAGCCAGTCCAC 59.737 66.667 6.99 0.00 0.00 4.02
3823 11576 3.695606 GCACCTCGAGCCAGTCCA 61.696 66.667 6.99 0.00 0.00 4.02
3901 11654 6.977213 ACACAACAAAAGGGTGACATTATAC 58.023 36.000 0.00 0.00 36.42 1.47
3905 11658 4.023291 AGACACAACAAAAGGGTGACATT 58.977 39.130 0.00 0.00 36.42 2.71
3912 11665 2.093764 TGGCAAAGACACAACAAAAGGG 60.094 45.455 0.00 0.00 0.00 3.95
3938 11691 4.137543 CAAATAATTCGGAAGGGAGGGAG 58.862 47.826 0.00 0.00 0.00 4.30
3939 11692 3.526019 ACAAATAATTCGGAAGGGAGGGA 59.474 43.478 0.00 0.00 0.00 4.20
3940 11693 3.898482 ACAAATAATTCGGAAGGGAGGG 58.102 45.455 0.00 0.00 0.00 4.30
3941 11694 5.914898 AAACAAATAATTCGGAAGGGAGG 57.085 39.130 0.00 0.00 0.00 4.30
3942 11695 6.071616 TCCAAAACAAATAATTCGGAAGGGAG 60.072 38.462 0.00 0.00 0.00 4.30
3943 11696 5.775701 TCCAAAACAAATAATTCGGAAGGGA 59.224 36.000 0.00 0.00 0.00 4.20
3944 11697 6.031751 TCCAAAACAAATAATTCGGAAGGG 57.968 37.500 0.00 0.00 0.00 3.95
3945 11698 8.442384 CAAATCCAAAACAAATAATTCGGAAGG 58.558 33.333 0.00 0.00 0.00 3.46
3946 11699 8.987890 ACAAATCCAAAACAAATAATTCGGAAG 58.012 29.630 0.00 0.00 0.00 3.46
3947 11700 8.894768 ACAAATCCAAAACAAATAATTCGGAA 57.105 26.923 0.00 0.00 0.00 4.30
3948 11701 8.364142 AGACAAATCCAAAACAAATAATTCGGA 58.636 29.630 0.00 0.00 0.00 4.55
3949 11702 8.532977 AGACAAATCCAAAACAAATAATTCGG 57.467 30.769 0.00 0.00 0.00 4.30
3956 11709 9.226606 TCGTATCTAGACAAATCCAAAACAAAT 57.773 29.630 0.00 0.00 0.00 2.32
3957 11710 8.610248 TCGTATCTAGACAAATCCAAAACAAA 57.390 30.769 0.00 0.00 0.00 2.83
3958 11711 8.610248 TTCGTATCTAGACAAATCCAAAACAA 57.390 30.769 0.00 0.00 0.00 2.83
3959 11712 8.664798 CATTCGTATCTAGACAAATCCAAAACA 58.335 33.333 0.00 0.00 0.00 2.83
3960 11713 8.665685 ACATTCGTATCTAGACAAATCCAAAAC 58.334 33.333 0.00 0.00 0.00 2.43
3961 11714 8.786826 ACATTCGTATCTAGACAAATCCAAAA 57.213 30.769 0.00 0.00 0.00 2.44
3991 11744 7.988028 GGAGGTATCTAGCACTAAAATGAGTTT 59.012 37.037 0.00 0.00 0.00 2.66
3992 11745 7.501844 GGAGGTATCTAGCACTAAAATGAGTT 58.498 38.462 0.00 0.00 0.00 3.01
3993 11746 6.239064 CGGAGGTATCTAGCACTAAAATGAGT 60.239 42.308 0.00 0.00 0.00 3.41
3994 11747 6.153067 CGGAGGTATCTAGCACTAAAATGAG 58.847 44.000 0.00 0.00 0.00 2.90
3995 11748 5.597182 ACGGAGGTATCTAGCACTAAAATGA 59.403 40.000 0.00 0.00 0.00 2.57
3996 11749 5.844004 ACGGAGGTATCTAGCACTAAAATG 58.156 41.667 0.00 0.00 0.00 2.32
3997 11750 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
4010 11763 9.756571 ATTAGATTTGTCTAGATACGGAGGTAT 57.243 33.333 0.00 0.00 42.01 2.73
4012 11765 9.012161 GTATTAGATTTGTCTAGATACGGAGGT 57.988 37.037 0.00 0.00 0.00 3.85
4013 11766 9.011095 TGTATTAGATTTGTCTAGATACGGAGG 57.989 37.037 0.00 0.00 0.00 4.30
4030 11783 9.751542 CTCTGTTCCGAATTACTTGTATTAGAT 57.248 33.333 0.00 0.00 0.00 1.98
4031 11784 8.195436 CCTCTGTTCCGAATTACTTGTATTAGA 58.805 37.037 0.00 0.00 0.00 2.10
4032 11785 7.438459 CCCTCTGTTCCGAATTACTTGTATTAG 59.562 40.741 0.00 0.00 0.00 1.73
4033 11786 7.124599 TCCCTCTGTTCCGAATTACTTGTATTA 59.875 37.037 0.00 0.00 0.00 0.98
4034 11787 6.070424 TCCCTCTGTTCCGAATTACTTGTATT 60.070 38.462 0.00 0.00 0.00 1.89
4035 11788 5.424252 TCCCTCTGTTCCGAATTACTTGTAT 59.576 40.000 0.00 0.00 0.00 2.29
4036 11789 4.773674 TCCCTCTGTTCCGAATTACTTGTA 59.226 41.667 0.00 0.00 0.00 2.41
4037 11790 3.581332 TCCCTCTGTTCCGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4038 11791 4.184629 CTCCCTCTGTTCCGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4039 11792 3.838903 ACTCCCTCTGTTCCGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
4040 11793 3.442076 ACTCCCTCTGTTCCGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
4041 11794 3.889520 ACTCCCTCTGTTCCGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
4042 11795 7.728981 AGAATATACTCCCTCTGTTCCGAATTA 59.271 37.037 0.00 0.00 0.00 1.40
4043 11796 6.555360 AGAATATACTCCCTCTGTTCCGAATT 59.445 38.462 0.00 0.00 0.00 2.17
4044 11797 6.078664 AGAATATACTCCCTCTGTTCCGAAT 58.921 40.000 0.00 0.00 0.00 3.34
4045 11798 5.455872 AGAATATACTCCCTCTGTTCCGAA 58.544 41.667 0.00 0.00 0.00 4.30
4046 11799 5.063017 AGAATATACTCCCTCTGTTCCGA 57.937 43.478 0.00 0.00 0.00 4.55
4047 11800 5.533482 CAAGAATATACTCCCTCTGTTCCG 58.467 45.833 0.00 0.00 0.00 4.30
4048 11801 5.163301 TGCAAGAATATACTCCCTCTGTTCC 60.163 44.000 0.00 0.00 0.00 3.62
4049 11802 5.918608 TGCAAGAATATACTCCCTCTGTTC 58.081 41.667 0.00 0.00 0.00 3.18
4050 11803 5.957771 TGCAAGAATATACTCCCTCTGTT 57.042 39.130 0.00 0.00 0.00 3.16
4051 11804 7.805083 ATATGCAAGAATATACTCCCTCTGT 57.195 36.000 0.00 0.00 0.00 3.41
4082 11835 8.329203 TGCAATTTACAAAGAAGTTGGTTTTT 57.671 26.923 0.00 0.00 41.97 1.94
4083 11836 7.913674 TGCAATTTACAAAGAAGTTGGTTTT 57.086 28.000 0.00 0.00 41.97 2.43
4084 11837 7.467131 GCATGCAATTTACAAAGAAGTTGGTTT 60.467 33.333 14.21 0.00 41.97 3.27
4085 11838 6.018016 GCATGCAATTTACAAAGAAGTTGGTT 60.018 34.615 14.21 0.00 41.97 3.67
4086 11839 5.466393 GCATGCAATTTACAAAGAAGTTGGT 59.534 36.000 14.21 0.00 41.97 3.67
4087 11840 5.466058 TGCATGCAATTTACAAAGAAGTTGG 59.534 36.000 20.30 0.00 41.97 3.77
4088 11841 6.528014 TGCATGCAATTTACAAAGAAGTTG 57.472 33.333 20.30 0.00 43.43 3.16
4089 11842 7.551035 TTTGCATGCAATTTACAAAGAAGTT 57.449 28.000 32.27 0.00 35.70 2.66
4090 11843 7.551035 TTTTGCATGCAATTTACAAAGAAGT 57.449 28.000 32.27 0.00 35.70 3.01
4138 11891 9.349713 TGGTATTGCTCTTTAAGAAGAAAGAAA 57.650 29.630 0.00 0.00 43.18 2.52
4139 11892 8.918202 TGGTATTGCTCTTTAAGAAGAAAGAA 57.082 30.769 0.00 0.00 43.18 2.52
4140 11893 8.918202 TTGGTATTGCTCTTTAAGAAGAAAGA 57.082 30.769 0.00 0.00 41.19 2.52
4141 11894 9.565213 CATTGGTATTGCTCTTTAAGAAGAAAG 57.435 33.333 0.00 0.00 41.19 2.62
4142 11895 9.077885 ACATTGGTATTGCTCTTTAAGAAGAAA 57.922 29.630 0.00 0.00 41.19 2.52
4143 11896 8.635765 ACATTGGTATTGCTCTTTAAGAAGAA 57.364 30.769 0.00 0.00 41.19 2.52
4144 11897 7.882791 TGACATTGGTATTGCTCTTTAAGAAGA 59.117 33.333 0.00 0.00 39.54 2.87
4145 11898 7.965107 GTGACATTGGTATTGCTCTTTAAGAAG 59.035 37.037 0.00 0.00 0.00 2.85
4146 11899 7.665559 AGTGACATTGGTATTGCTCTTTAAGAA 59.334 33.333 0.00 0.00 0.00 2.52
4147 11900 7.168219 AGTGACATTGGTATTGCTCTTTAAGA 58.832 34.615 0.00 0.00 0.00 2.10
4148 11901 7.383102 AGTGACATTGGTATTGCTCTTTAAG 57.617 36.000 0.00 0.00 0.00 1.85
4149 11902 8.856153 TTAGTGACATTGGTATTGCTCTTTAA 57.144 30.769 0.00 0.00 0.00 1.52
4150 11903 9.461312 AATTAGTGACATTGGTATTGCTCTTTA 57.539 29.630 0.00 0.00 0.00 1.85
4151 11904 7.944729 ATTAGTGACATTGGTATTGCTCTTT 57.055 32.000 0.00 0.00 0.00 2.52
4152 11905 7.944729 AATTAGTGACATTGGTATTGCTCTT 57.055 32.000 0.00 0.00 0.00 2.85
4153 11906 7.944729 AAATTAGTGACATTGGTATTGCTCT 57.055 32.000 0.00 0.00 0.00 4.09
4154 11907 9.884465 GATAAATTAGTGACATTGGTATTGCTC 57.116 33.333 0.00 0.00 0.00 4.26
4155 11908 8.850156 GGATAAATTAGTGACATTGGTATTGCT 58.150 33.333 0.00 0.00 0.00 3.91
4156 11909 8.082242 GGGATAAATTAGTGACATTGGTATTGC 58.918 37.037 0.00 0.00 0.00 3.56
4157 11910 9.130661 TGGGATAAATTAGTGACATTGGTATTG 57.869 33.333 0.00 0.00 0.00 1.90
4158 11911 9.707957 TTGGGATAAATTAGTGACATTGGTATT 57.292 29.630 0.00 0.00 0.00 1.89
4159 11912 9.354673 CTTGGGATAAATTAGTGACATTGGTAT 57.645 33.333 0.00 0.00 0.00 2.73
4160 11913 8.333235 ACTTGGGATAAATTAGTGACATTGGTA 58.667 33.333 0.00 0.00 0.00 3.25
4161 11914 7.182060 ACTTGGGATAAATTAGTGACATTGGT 58.818 34.615 0.00 0.00 0.00 3.67
4162 11915 7.645058 ACTTGGGATAAATTAGTGACATTGG 57.355 36.000 0.00 0.00 0.00 3.16
4166 11919 9.967451 TTCATTACTTGGGATAAATTAGTGACA 57.033 29.630 0.00 0.00 0.00 3.58
4202 11955 9.527157 TCATCCCACTAAGAAACAAATAATGAA 57.473 29.630 0.00 0.00 0.00 2.57
4203 11956 9.527157 TTCATCCCACTAAGAAACAAATAATGA 57.473 29.630 0.00 0.00 0.00 2.57
4208 11961 9.533831 ACTAATTCATCCCACTAAGAAACAAAT 57.466 29.630 0.00 0.00 0.00 2.32
4209 11962 8.792633 CACTAATTCATCCCACTAAGAAACAAA 58.207 33.333 0.00 0.00 0.00 2.83
4210 11963 8.160765 TCACTAATTCATCCCACTAAGAAACAA 58.839 33.333 0.00 0.00 0.00 2.83
4211 11964 7.606456 GTCACTAATTCATCCCACTAAGAAACA 59.394 37.037 0.00 0.00 0.00 2.83
4212 11965 7.606456 TGTCACTAATTCATCCCACTAAGAAAC 59.394 37.037 0.00 0.00 0.00 2.78
4213 11966 7.685481 TGTCACTAATTCATCCCACTAAGAAA 58.315 34.615 0.00 0.00 0.00 2.52
4214 11967 7.252612 TGTCACTAATTCATCCCACTAAGAA 57.747 36.000 0.00 0.00 0.00 2.52
4215 11968 6.867519 TGTCACTAATTCATCCCACTAAGA 57.132 37.500 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.