Multiple sequence alignment - TraesCS6A01G267600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G267600 chr6A 100.000 4201 0 0 1 4201 493754725 493758925 0.000000e+00 7758.0
1 TraesCS6A01G267600 chr6A 95.072 1887 61 15 1400 3277 493842324 493844187 0.000000e+00 2940.0
2 TraesCS6A01G267600 chr6A 94.585 1902 96 4 1352 3249 495154311 495152413 0.000000e+00 2935.0
3 TraesCS6A01G267600 chr6A 92.132 1881 129 12 1362 3236 494046787 494048654 0.000000e+00 2636.0
4 TraesCS6A01G267600 chr6A 91.878 197 15 1 1360 1556 494880825 494880630 1.490000e-69 274.0
5 TraesCS6A01G267600 chr6A 92.063 63 5 0 978 1040 495154717 495154655 5.790000e-14 89.8
6 TraesCS6A01G267600 chr6B 93.702 3001 96 27 311 3277 529772800 529775741 0.000000e+00 4409.0
7 TraesCS6A01G267600 chr6B 94.227 1888 104 3 1351 3233 530852430 530850543 0.000000e+00 2878.0
8 TraesCS6A01G267600 chr6B 95.033 1671 79 2 1570 3236 529889858 529891528 0.000000e+00 2623.0
9 TraesCS6A01G267600 chr6B 82.494 1628 228 37 1602 3203 52086455 52088051 0.000000e+00 1375.0
10 TraesCS6A01G267600 chr6B 85.577 208 17 7 1 195 529772346 529772553 5.510000e-49 206.0
11 TraesCS6A01G267600 chr6B 96.296 81 3 0 192 272 529772576 529772656 2.640000e-27 134.0
12 TraesCS6A01G267600 chr6B 76.033 242 39 16 841 1068 530852939 530852703 1.600000e-19 108.0
13 TraesCS6A01G267600 chr6D 94.093 1930 105 3 1351 3277 348861131 348863054 0.000000e+00 2924.0
14 TraesCS6A01G267600 chr6D 89.978 2305 160 43 976 3230 349030787 349033070 0.000000e+00 2911.0
15 TraesCS6A01G267600 chr6D 97.958 1371 28 0 1907 3277 350204780 350203410 0.000000e+00 2377.0
16 TraesCS6A01G267600 chr6D 90.771 1582 87 26 311 1876 350206310 350204772 0.000000e+00 2058.0
17 TraesCS6A01G267600 chr6D 87.937 630 38 16 3301 3893 350138063 350137435 0.000000e+00 708.0
18 TraesCS6A01G267600 chr6D 94.444 306 15 2 3893 4196 271331617 271331922 1.770000e-128 470.0
19 TraesCS6A01G267600 chr6D 92.000 150 12 0 1 150 350208104 350207955 1.180000e-50 211.0
20 TraesCS6A01G267600 chr6D 94.215 121 7 0 192 312 350206523 350206403 7.170000e-43 185.0
21 TraesCS6A01G267600 chr6D 92.063 63 5 0 978 1040 358216547 358216609 5.790000e-14 89.8
22 TraesCS6A01G267600 chr7D 87.622 614 55 10 3300 3893 421147430 421148042 0.000000e+00 693.0
23 TraesCS6A01G267600 chr7D 84.343 594 75 8 3318 3893 436476150 436475557 2.190000e-157 566.0
24 TraesCS6A01G267600 chr7D 94.805 308 13 3 3893 4198 490105021 490105327 1.060000e-130 477.0
25 TraesCS6A01G267600 chr5D 83.838 594 72 12 3320 3893 443352927 443352338 1.030000e-150 544.0
26 TraesCS6A01G267600 chr1B 82.746 539 88 4 3318 3852 223768463 223767926 3.800000e-130 475.0
27 TraesCS6A01G267600 chr4A 93.871 310 17 2 3893 4201 156109080 156109388 2.290000e-127 466.0
28 TraesCS6A01G267600 chr7A 93.548 310 18 2 3893 4201 450095537 450095845 1.060000e-125 460.0
29 TraesCS6A01G267600 chr7A 93.506 308 18 2 3894 4200 96862857 96863163 1.380000e-124 457.0
30 TraesCS6A01G267600 chr7A 93.226 310 18 3 3894 4201 639328004 639328312 1.780000e-123 453.0
31 TraesCS6A01G267600 chr7A 93.204 309 19 2 3894 4201 709661358 709661051 1.780000e-123 453.0
32 TraesCS6A01G267600 chr5A 93.791 306 16 3 3893 4196 488526214 488526518 1.380000e-124 457.0
33 TraesCS6A01G267600 chr5A 81.330 466 77 7 3294 3752 488040734 488041196 1.840000e-98 370.0
34 TraesCS6A01G267600 chr1D 93.204 309 19 2 3894 4201 227869139 227869446 1.780000e-123 453.0
35 TraesCS6A01G267600 chr3B 81.455 550 77 18 3318 3852 666806064 666806603 1.080000e-115 427.0
36 TraesCS6A01G267600 chr2D 80.560 571 95 14 3320 3886 99730986 99730428 3.880000e-115 425.0
37 TraesCS6A01G267600 chr5B 81.963 438 64 13 3423 3852 628673982 628674412 1.440000e-94 357.0
38 TraesCS6A01G267600 chr5B 81.193 436 71 10 3423 3852 625094433 625094863 1.450000e-89 340.0
39 TraesCS6A01G267600 chrUn 90.769 65 6 0 976 1040 209272252 209272316 2.080000e-13 87.9
40 TraesCS6A01G267600 chr7B 90.769 65 6 0 976 1040 642232385 642232449 2.080000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G267600 chr6A 493754725 493758925 4200 False 7758.00 7758 100.000000 1 4201 1 chr6A.!!$F1 4200
1 TraesCS6A01G267600 chr6A 493842324 493844187 1863 False 2940.00 2940 95.072000 1400 3277 1 chr6A.!!$F2 1877
2 TraesCS6A01G267600 chr6A 494046787 494048654 1867 False 2636.00 2636 92.132000 1362 3236 1 chr6A.!!$F3 1874
3 TraesCS6A01G267600 chr6A 495152413 495154717 2304 True 1512.40 2935 93.324000 978 3249 2 chr6A.!!$R2 2271
4 TraesCS6A01G267600 chr6B 529889858 529891528 1670 False 2623.00 2623 95.033000 1570 3236 1 chr6B.!!$F2 1666
5 TraesCS6A01G267600 chr6B 529772346 529775741 3395 False 1583.00 4409 91.858333 1 3277 3 chr6B.!!$F3 3276
6 TraesCS6A01G267600 chr6B 530850543 530852939 2396 True 1493.00 2878 85.130000 841 3233 2 chr6B.!!$R1 2392
7 TraesCS6A01G267600 chr6B 52086455 52088051 1596 False 1375.00 1375 82.494000 1602 3203 1 chr6B.!!$F1 1601
8 TraesCS6A01G267600 chr6D 348861131 348863054 1923 False 2924.00 2924 94.093000 1351 3277 1 chr6D.!!$F2 1926
9 TraesCS6A01G267600 chr6D 349030787 349033070 2283 False 2911.00 2911 89.978000 976 3230 1 chr6D.!!$F3 2254
10 TraesCS6A01G267600 chr6D 350203410 350208104 4694 True 1207.75 2377 93.736000 1 3277 4 chr6D.!!$R2 3276
11 TraesCS6A01G267600 chr6D 350137435 350138063 628 True 708.00 708 87.937000 3301 3893 1 chr6D.!!$R1 592
12 TraesCS6A01G267600 chr7D 421147430 421148042 612 False 693.00 693 87.622000 3300 3893 1 chr7D.!!$F1 593
13 TraesCS6A01G267600 chr7D 436475557 436476150 593 True 566.00 566 84.343000 3318 3893 1 chr7D.!!$R1 575
14 TraesCS6A01G267600 chr5D 443352338 443352927 589 True 544.00 544 83.838000 3320 3893 1 chr5D.!!$R1 573
15 TraesCS6A01G267600 chr1B 223767926 223768463 537 True 475.00 475 82.746000 3318 3852 1 chr1B.!!$R1 534
16 TraesCS6A01G267600 chr3B 666806064 666806603 539 False 427.00 427 81.455000 3318 3852 1 chr3B.!!$F1 534
17 TraesCS6A01G267600 chr2D 99730428 99730986 558 True 425.00 425 80.560000 3320 3886 1 chr2D.!!$R1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 2248 0.462759 GCTTAGCTAGCCACCACCTG 60.463 60.000 12.13 0.00 44.48 4.00 F
1221 2857 0.386858 TCTTGCGTACGTCAGCAGTC 60.387 55.000 17.90 0.00 44.72 3.51 F
1223 2859 0.663269 TTGCGTACGTCAGCAGTCAG 60.663 55.000 17.90 0.00 44.72 3.51 F
2474 4176 1.005748 CTCGTGGAAGCTCTGCACA 60.006 57.895 16.35 6.81 46.25 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 3303 0.543277 TGCTCTCCAGGCATTCGAAT 59.457 50.000 4.39 4.39 34.56 3.34 R
2474 4176 0.902516 GCTCCTCCACCTGAGTCACT 60.903 60.000 0.00 0.00 39.65 3.41 R
2891 4602 3.059982 CAGAACACCTCTCCGCCA 58.940 61.111 0.00 0.00 29.07 5.69 R
4170 5938 0.108186 TCATCATCACCGTCACCAGC 60.108 55.000 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.900855 CAGGCACACCATCAGAGC 58.099 61.111 0.00 0.00 39.06 4.09
32 33 4.727507 TCAGAGCCAGTAGATTCAGAAC 57.272 45.455 0.00 0.00 0.00 3.01
82 83 7.012610 TCACTATATGGATGAAACATTGCACTG 59.987 37.037 1.95 1.95 0.00 3.66
141 142 1.481772 TGACAAAAAGCAGCAGCCTTT 59.518 42.857 0.00 0.00 43.56 3.11
150 151 2.958355 AGCAGCAGCCTTTGTTTCTTTA 59.042 40.909 0.00 0.00 43.56 1.85
151 152 3.384467 AGCAGCAGCCTTTGTTTCTTTAA 59.616 39.130 0.00 0.00 43.56 1.52
152 153 3.737774 GCAGCAGCCTTTGTTTCTTTAAG 59.262 43.478 0.00 0.00 33.58 1.85
154 155 5.218139 CAGCAGCCTTTGTTTCTTTAAGAG 58.782 41.667 0.00 0.00 0.00 2.85
155 156 5.009010 CAGCAGCCTTTGTTTCTTTAAGAGA 59.991 40.000 0.00 0.00 0.00 3.10
157 158 5.917447 GCAGCCTTTGTTTCTTTAAGAGAAG 59.083 40.000 0.00 0.00 44.80 2.85
158 159 6.238759 GCAGCCTTTGTTTCTTTAAGAGAAGA 60.239 38.462 0.00 0.00 44.80 2.87
159 160 7.358830 CAGCCTTTGTTTCTTTAAGAGAAGAG 58.641 38.462 0.00 0.00 44.80 2.85
184 1549 1.356124 ACTCCATTGCAGGACTGAGT 58.644 50.000 3.00 0.00 33.19 3.41
277 1668 7.497249 TCTTAATGAAGGAAGAAATAGCTGAGC 59.503 37.037 0.00 0.00 33.09 4.26
291 1682 2.249413 CTGAGCCTGTAGGTGCCCAG 62.249 65.000 0.00 0.00 37.57 4.45
316 1843 5.699915 CCTGACTGCATATGACCTTAATCAG 59.300 44.000 6.97 8.36 30.46 2.90
340 1867 2.447244 AGGAACAGTTCTGAAGCTCG 57.553 50.000 13.13 0.00 0.00 5.03
362 1889 2.238898 CCGGAATAGAACCTGGAAACCT 59.761 50.000 0.00 0.00 0.00 3.50
363 1890 3.453353 CCGGAATAGAACCTGGAAACCTA 59.547 47.826 0.00 0.00 0.00 3.08
364 1891 4.443034 CCGGAATAGAACCTGGAAACCTAG 60.443 50.000 0.00 0.00 0.00 3.02
365 1892 4.404715 CGGAATAGAACCTGGAAACCTAGA 59.595 45.833 0.00 0.00 0.00 2.43
366 1893 5.452077 CGGAATAGAACCTGGAAACCTAGAG 60.452 48.000 0.00 0.00 0.00 2.43
367 1894 5.163290 GGAATAGAACCTGGAAACCTAGAGG 60.163 48.000 0.00 0.00 42.17 3.69
368 1895 3.562108 AGAACCTGGAAACCTAGAGGA 57.438 47.619 0.00 0.00 38.94 3.71
369 1896 4.081695 AGAACCTGGAAACCTAGAGGAT 57.918 45.455 0.00 0.00 38.94 3.24
389 1916 2.108157 CGCAGCCTTGGCCGTATA 59.892 61.111 8.17 0.00 0.00 1.47
411 1938 3.138304 CCACGAGAAATTTGACCTGTCA 58.862 45.455 0.00 0.00 37.91 3.58
506 2039 2.029307 GACCCGGCTGACCCTATGAC 62.029 65.000 0.00 0.00 0.00 3.06
620 2153 1.811558 CGAAAGGATCCGACATGGCAT 60.812 52.381 5.98 0.00 37.80 4.40
715 2248 0.462759 GCTTAGCTAGCCACCACCTG 60.463 60.000 12.13 0.00 44.48 4.00
828 2384 4.999950 CCAAGCTGACCCTGCTATATAAAG 59.000 45.833 0.00 0.00 37.67 1.85
834 2390 3.240302 ACCCTGCTATATAAAGCTCCGT 58.760 45.455 0.00 0.00 43.19 4.69
863 2421 1.004799 CAGCAGCAGCAGACAGAGT 60.005 57.895 3.17 0.00 45.49 3.24
906 2464 3.574826 AGCTAAGAGTTCACGAAGGAAGT 59.425 43.478 0.00 0.00 33.24 3.01
912 2470 3.894257 TCACGAAGGAAGTGAGCTG 57.106 52.632 0.00 0.00 42.91 4.24
937 2514 3.964411 AGGGTTAGCAAAGTGATTACCC 58.036 45.455 11.74 11.74 43.23 3.69
1056 2664 4.787260 GGTAATTACCTCCTCCGATCTC 57.213 50.000 24.79 0.00 43.10 2.75
1098 2728 2.756207 TGCATGATTGTCACAATGGAGG 59.244 45.455 8.05 0.00 0.00 4.30
1108 2738 2.562298 TCACAATGGAGGTTGAAATGCC 59.438 45.455 0.00 0.00 33.37 4.40
1114 2744 2.238521 GGAGGTTGAAATGCCAAGTCA 58.761 47.619 0.00 0.00 0.00 3.41
1141 2771 0.874390 TGCTTCTGCATCGGTCAAAC 59.126 50.000 0.00 0.00 45.31 2.93
1158 2788 6.106003 GGTCAAACCAAGAAGAACATTTGTT 58.894 36.000 0.00 0.00 38.42 2.83
1160 2790 7.412891 GGTCAAACCAAGAAGAACATTTGTTTG 60.413 37.037 0.00 0.00 38.42 2.93
1174 2807 6.186957 ACATTTGTTTGCCTCCATATAGACA 58.813 36.000 0.00 0.00 0.00 3.41
1177 2810 5.692115 TGTTTGCCTCCATATAGACAGAA 57.308 39.130 0.00 0.00 0.00 3.02
1183 2817 7.473735 TGCCTCCATATAGACAGAATCTAAG 57.526 40.000 0.00 0.00 43.33 2.18
1219 2855 1.350193 ATTCTTGCGTACGTCAGCAG 58.650 50.000 17.90 10.35 44.72 4.24
1221 2857 0.386858 TCTTGCGTACGTCAGCAGTC 60.387 55.000 17.90 0.00 44.72 3.51
1223 2859 0.663269 TTGCGTACGTCAGCAGTCAG 60.663 55.000 17.90 0.00 44.72 3.51
1224 2860 2.437343 GCGTACGTCAGCAGTCAGC 61.437 63.158 17.90 0.00 46.19 4.26
1246 2882 4.437659 GCACTGAAGGTTTTTAACACGTGA 60.438 41.667 25.01 0.00 0.00 4.35
1315 2955 1.015868 CACATGCGCACATCCACATA 58.984 50.000 14.90 0.00 32.87 2.29
1316 2956 1.016627 ACATGCGCACATCCACATAC 58.983 50.000 14.90 0.00 32.87 2.39
1317 2957 1.015868 CATGCGCACATCCACATACA 58.984 50.000 14.90 0.00 32.87 2.29
1318 2958 1.605232 CATGCGCACATCCACATACAT 59.395 47.619 14.90 0.00 32.87 2.29
1349 2992 4.034975 GTGCTGCATCTTATCCAGAACTTC 59.965 45.833 5.27 0.00 33.30 3.01
1358 3030 9.829507 CATCTTATCCAGAACTTCTACAGATTT 57.170 33.333 0.00 0.00 34.16 2.17
1613 3303 2.252556 CGCCATTGTTGGTGCAGTA 58.747 52.632 0.00 0.00 46.01 2.74
1724 3414 4.980805 GCCTCCAACGTCGCCACA 62.981 66.667 0.00 0.00 0.00 4.17
1856 3546 2.962569 CTCGTCACCTTCTCCGCA 59.037 61.111 0.00 0.00 0.00 5.69
2381 4077 2.434884 CCAAGGATCGCGCACACT 60.435 61.111 8.75 0.00 0.00 3.55
2411 4107 3.621805 TTCCTCGACAAGGCGGCA 61.622 61.111 13.08 0.00 45.78 5.69
2474 4176 1.005748 CTCGTGGAAGCTCTGCACA 60.006 57.895 16.35 6.81 46.25 4.57
2783 4494 2.771762 GGGAGGCTCCTCATGGCT 60.772 66.667 31.39 0.00 44.40 4.75
2891 4602 0.247736 CGCAGTACTTCTTCCTGGCT 59.752 55.000 0.00 0.00 0.00 4.75
3029 4740 2.808523 TGAGCTCCTTCATCTATGCG 57.191 50.000 12.15 0.00 0.00 4.73
3277 4992 5.405063 AGAGTAATTAGGAGTAGCCAGGA 57.595 43.478 0.00 0.00 40.02 3.86
3278 4993 5.778542 AGAGTAATTAGGAGTAGCCAGGAA 58.221 41.667 0.00 0.00 40.02 3.36
3279 4994 6.203072 AGAGTAATTAGGAGTAGCCAGGAAA 58.797 40.000 0.00 0.00 40.02 3.13
3280 4995 6.325286 AGAGTAATTAGGAGTAGCCAGGAAAG 59.675 42.308 0.00 0.00 40.02 2.62
3281 4996 6.203072 AGTAATTAGGAGTAGCCAGGAAAGA 58.797 40.000 0.00 0.00 40.02 2.52
3282 4997 5.622346 AATTAGGAGTAGCCAGGAAAGAG 57.378 43.478 0.00 0.00 40.02 2.85
3283 4998 2.632763 AGGAGTAGCCAGGAAAGAGT 57.367 50.000 0.00 0.00 40.02 3.24
3284 4999 3.759815 AGGAGTAGCCAGGAAAGAGTA 57.240 47.619 0.00 0.00 40.02 2.59
3285 5000 4.062490 AGGAGTAGCCAGGAAAGAGTAA 57.938 45.455 0.00 0.00 40.02 2.24
3286 5001 4.625963 AGGAGTAGCCAGGAAAGAGTAAT 58.374 43.478 0.00 0.00 40.02 1.89
3287 5002 5.033522 AGGAGTAGCCAGGAAAGAGTAATT 58.966 41.667 0.00 0.00 40.02 1.40
3288 5003 6.203072 AGGAGTAGCCAGGAAAGAGTAATTA 58.797 40.000 0.00 0.00 40.02 1.40
3289 5004 6.325286 AGGAGTAGCCAGGAAAGAGTAATTAG 59.675 42.308 0.00 0.00 40.02 1.73
3290 5005 6.463190 GGAGTAGCCAGGAAAGAGTAATTAGG 60.463 46.154 0.00 0.00 36.34 2.69
3291 5006 6.203072 AGTAGCCAGGAAAGAGTAATTAGGA 58.797 40.000 0.00 0.00 0.00 2.94
3292 5007 5.622346 AGCCAGGAAAGAGTAATTAGGAG 57.378 43.478 0.00 0.00 0.00 3.69
3293 5008 5.033522 AGCCAGGAAAGAGTAATTAGGAGT 58.966 41.667 0.00 0.00 0.00 3.85
3294 5009 6.203072 AGCCAGGAAAGAGTAATTAGGAGTA 58.797 40.000 0.00 0.00 0.00 2.59
3295 5010 6.325286 AGCCAGGAAAGAGTAATTAGGAGTAG 59.675 42.308 0.00 0.00 0.00 2.57
3296 5011 6.517605 CCAGGAAAGAGTAATTAGGAGTAGC 58.482 44.000 0.00 0.00 0.00 3.58
3297 5012 6.463190 CCAGGAAAGAGTAATTAGGAGTAGCC 60.463 46.154 0.00 0.00 0.00 3.93
3298 5013 6.098409 CAGGAAAGAGTAATTAGGAGTAGCCA 59.902 42.308 0.00 0.00 40.02 4.75
3314 5029 1.674322 CCAGACCCCGCAAAATCGT 60.674 57.895 0.00 0.00 0.00 3.73
3346 5061 1.700955 ATTCCAGCGAGTATACGGGT 58.299 50.000 0.00 0.00 0.00 5.28
3376 5091 2.337879 TTTGTGGCCAGAACCGAGCT 62.338 55.000 16.14 0.00 0.00 4.09
3394 5109 3.292936 CGTATACTCGCCCGGCCT 61.293 66.667 3.10 0.00 0.00 5.19
3465 5187 1.154225 CGGGTTCGCAGTGCATTTC 60.154 57.895 16.83 1.44 0.00 2.17
3466 5188 1.577328 CGGGTTCGCAGTGCATTTCT 61.577 55.000 16.83 0.00 0.00 2.52
3512 5235 1.517832 CGTCTCTCCGCAATTCCCT 59.482 57.895 0.00 0.00 0.00 4.20
3540 5268 0.750249 TCTCATATTTCTCGCCGCCA 59.250 50.000 0.00 0.00 0.00 5.69
3670 5424 2.182030 GGCGAGGAAGTGGACGAG 59.818 66.667 0.00 0.00 0.00 4.18
3775 5531 3.083997 GGGCTCATCCTCCACCGT 61.084 66.667 0.00 0.00 34.39 4.83
3831 5588 4.821589 CGAGCCTTCTCCCCGTGC 62.822 72.222 0.00 0.00 35.94 5.34
3844 5601 3.953775 CGTGCAGAGGGGGTGGTT 61.954 66.667 0.00 0.00 0.00 3.67
3852 5609 3.339093 GGGGGTGGTTGGAGGAGG 61.339 72.222 0.00 0.00 0.00 4.30
3853 5610 2.531942 GGGGTGGTTGGAGGAGGT 60.532 66.667 0.00 0.00 0.00 3.85
3854 5611 2.603652 GGGGTGGTTGGAGGAGGTC 61.604 68.421 0.00 0.00 0.00 3.85
3859 5616 1.609794 GGTTGGAGGAGGTCGAGGT 60.610 63.158 0.00 0.00 0.00 3.85
3860 5617 1.605971 GGTTGGAGGAGGTCGAGGTC 61.606 65.000 0.00 0.00 0.00 3.85
3882 5650 2.125350 CTCAAGCAGGAGCCCGAC 60.125 66.667 0.00 0.00 43.56 4.79
3899 5667 3.786101 CGAGATCGTGCTGTTGGG 58.214 61.111 0.00 0.00 34.11 4.12
3900 5668 1.811266 CGAGATCGTGCTGTTGGGG 60.811 63.158 0.00 0.00 34.11 4.96
3901 5669 1.596934 GAGATCGTGCTGTTGGGGA 59.403 57.895 0.00 0.00 0.00 4.81
3902 5670 0.036388 GAGATCGTGCTGTTGGGGAA 60.036 55.000 0.00 0.00 0.00 3.97
3903 5671 0.321653 AGATCGTGCTGTTGGGGAAC 60.322 55.000 0.00 0.00 0.00 3.62
3904 5672 1.635663 GATCGTGCTGTTGGGGAACG 61.636 60.000 0.00 0.00 37.10 3.95
3905 5673 4.025401 CGTGCTGTTGGGGAACGC 62.025 66.667 0.00 0.00 43.69 4.84
3917 5685 3.926821 GGGGAACGCAGTATTTCAAAA 57.073 42.857 0.00 0.00 45.00 2.44
3918 5686 4.245845 GGGGAACGCAGTATTTCAAAAA 57.754 40.909 0.00 0.00 45.00 1.94
3939 5707 5.794687 AAAAATCATACGATCACGCAAGA 57.205 34.783 0.00 0.00 43.96 3.02
3940 5708 5.991328 AAAATCATACGATCACGCAAGAT 57.009 34.783 0.00 0.00 43.96 2.40
3941 5709 5.582439 AAATCATACGATCACGCAAGATC 57.418 39.130 5.52 5.52 43.96 2.75
3942 5710 3.990318 TCATACGATCACGCAAGATCT 57.010 42.857 12.06 0.00 41.74 2.75
3943 5711 5.629079 ATCATACGATCACGCAAGATCTA 57.371 39.130 12.06 5.78 41.74 1.98
3944 5712 5.629079 TCATACGATCACGCAAGATCTAT 57.371 39.130 12.06 7.31 41.74 1.98
3945 5713 5.631992 TCATACGATCACGCAAGATCTATC 58.368 41.667 12.06 0.00 41.74 2.08
3946 5714 5.412904 TCATACGATCACGCAAGATCTATCT 59.587 40.000 12.06 0.00 41.74 1.98
3947 5715 6.594159 TCATACGATCACGCAAGATCTATCTA 59.406 38.462 12.06 0.00 41.74 1.98
3948 5716 5.289917 ACGATCACGCAAGATCTATCTAG 57.710 43.478 12.06 0.00 41.74 2.43
3949 5717 4.155099 ACGATCACGCAAGATCTATCTAGG 59.845 45.833 12.06 0.32 41.74 3.02
3950 5718 4.393371 CGATCACGCAAGATCTATCTAGGA 59.607 45.833 12.06 0.00 41.74 2.94
3951 5719 5.065859 CGATCACGCAAGATCTATCTAGGAT 59.934 44.000 12.06 0.00 41.74 3.24
3952 5720 6.258947 CGATCACGCAAGATCTATCTAGGATA 59.741 42.308 12.06 0.00 41.74 2.59
3953 5721 7.041440 CGATCACGCAAGATCTATCTAGGATAT 60.041 40.741 12.06 0.00 41.74 1.63
3954 5722 7.326968 TCACGCAAGATCTATCTAGGATATG 57.673 40.000 0.00 0.00 43.62 1.78
3955 5723 5.976534 CACGCAAGATCTATCTAGGATATGC 59.023 44.000 0.00 0.00 43.62 3.14
3956 5724 5.654209 ACGCAAGATCTATCTAGGATATGCA 59.346 40.000 0.00 0.00 43.62 3.96
3957 5725 6.323482 ACGCAAGATCTATCTAGGATATGCAT 59.677 38.462 3.79 3.79 43.62 3.96
3958 5726 7.503902 ACGCAAGATCTATCTAGGATATGCATA 59.496 37.037 9.27 9.27 43.62 3.14
3959 5727 8.022550 CGCAAGATCTATCTAGGATATGCATAG 58.977 40.741 12.79 0.00 36.64 2.23
3960 5728 7.814107 GCAAGATCTATCTAGGATATGCATAGC 59.186 40.741 13.62 13.62 36.73 2.97
3961 5729 8.858094 CAAGATCTATCTAGGATATGCATAGCA 58.142 37.037 22.52 3.30 38.57 3.49
3962 5730 9.431690 AAGATCTATCTAGGATATGCATAGCAA 57.568 33.333 22.52 9.75 37.99 3.91
3963 5731 8.859090 AGATCTATCTAGGATATGCATAGCAAC 58.141 37.037 22.52 7.17 37.47 4.17
3964 5732 7.032377 TCTATCTAGGATATGCATAGCAACG 57.968 40.000 22.52 10.13 43.62 4.10
3965 5733 5.921962 ATCTAGGATATGCATAGCAACGA 57.078 39.130 22.52 14.59 43.62 3.85
3966 5734 5.316327 TCTAGGATATGCATAGCAACGAG 57.684 43.478 22.52 11.93 43.62 4.18
3967 5735 5.010282 TCTAGGATATGCATAGCAACGAGA 58.990 41.667 22.52 13.80 43.62 4.04
3968 5736 4.607293 AGGATATGCATAGCAACGAGAA 57.393 40.909 22.52 0.00 43.62 2.87
3969 5737 4.564041 AGGATATGCATAGCAACGAGAAG 58.436 43.478 22.52 0.00 43.62 2.85
3970 5738 3.681897 GGATATGCATAGCAACGAGAAGG 59.318 47.826 22.52 0.00 43.62 3.46
3971 5739 1.959042 ATGCATAGCAACGAGAAGGG 58.041 50.000 0.00 0.00 43.62 3.95
3972 5740 0.901827 TGCATAGCAACGAGAAGGGA 59.098 50.000 0.00 0.00 34.76 4.20
3973 5741 1.134699 TGCATAGCAACGAGAAGGGAG 60.135 52.381 0.00 0.00 34.76 4.30
3974 5742 1.137086 GCATAGCAACGAGAAGGGAGA 59.863 52.381 0.00 0.00 0.00 3.71
3975 5743 2.801342 GCATAGCAACGAGAAGGGAGAG 60.801 54.545 0.00 0.00 0.00 3.20
3976 5744 2.217510 TAGCAACGAGAAGGGAGAGT 57.782 50.000 0.00 0.00 0.00 3.24
3977 5745 0.605589 AGCAACGAGAAGGGAGAGTG 59.394 55.000 0.00 0.00 0.00 3.51
3978 5746 0.318762 GCAACGAGAAGGGAGAGTGT 59.681 55.000 0.00 0.00 0.00 3.55
3979 5747 1.937108 GCAACGAGAAGGGAGAGTGTG 60.937 57.143 0.00 0.00 0.00 3.82
3980 5748 1.341531 CAACGAGAAGGGAGAGTGTGT 59.658 52.381 0.00 0.00 0.00 3.72
3981 5749 1.249407 ACGAGAAGGGAGAGTGTGTC 58.751 55.000 0.00 0.00 0.00 3.67
3982 5750 1.202952 ACGAGAAGGGAGAGTGTGTCT 60.203 52.381 0.00 0.00 38.71 3.41
3983 5751 2.040012 ACGAGAAGGGAGAGTGTGTCTA 59.960 50.000 0.00 0.00 34.71 2.59
3984 5752 2.420722 CGAGAAGGGAGAGTGTGTCTAC 59.579 54.545 0.00 0.00 34.71 2.59
3985 5753 2.420722 GAGAAGGGAGAGTGTGTCTACG 59.579 54.545 0.00 0.00 36.91 3.51
3986 5754 2.161030 GAAGGGAGAGTGTGTCTACGT 58.839 52.381 0.00 0.00 36.91 3.57
3987 5755 3.008813 AGAAGGGAGAGTGTGTCTACGTA 59.991 47.826 0.00 0.00 36.91 3.57
3988 5756 2.709213 AGGGAGAGTGTGTCTACGTAC 58.291 52.381 0.00 0.00 36.91 3.67
3989 5757 1.742268 GGGAGAGTGTGTCTACGTACC 59.258 57.143 0.00 0.00 36.91 3.34
3990 5758 1.742268 GGAGAGTGTGTCTACGTACCC 59.258 57.143 0.00 0.00 34.71 3.69
3991 5759 2.617532 GGAGAGTGTGTCTACGTACCCT 60.618 54.545 0.00 0.00 34.71 4.34
3992 5760 2.677337 GAGAGTGTGTCTACGTACCCTC 59.323 54.545 0.00 0.00 34.71 4.30
3993 5761 2.039480 AGAGTGTGTCTACGTACCCTCA 59.961 50.000 0.00 0.00 31.71 3.86
3994 5762 3.015327 GAGTGTGTCTACGTACCCTCAT 58.985 50.000 0.00 0.00 0.00 2.90
3995 5763 4.080695 AGAGTGTGTCTACGTACCCTCATA 60.081 45.833 0.00 0.00 31.71 2.15
3996 5764 4.197750 AGTGTGTCTACGTACCCTCATAG 58.802 47.826 0.00 0.00 0.00 2.23
3997 5765 4.080695 AGTGTGTCTACGTACCCTCATAGA 60.081 45.833 0.00 0.00 0.00 1.98
3998 5766 4.034975 GTGTGTCTACGTACCCTCATAGAC 59.965 50.000 4.30 4.30 42.53 2.59
3999 5767 3.563390 GTGTCTACGTACCCTCATAGACC 59.437 52.174 8.04 0.00 41.84 3.85
4000 5768 2.805099 GTCTACGTACCCTCATAGACCG 59.195 54.545 0.00 0.00 38.29 4.79
4001 5769 2.700371 TCTACGTACCCTCATAGACCGA 59.300 50.000 0.00 0.00 0.00 4.69
4002 5770 2.425143 ACGTACCCTCATAGACCGAA 57.575 50.000 0.00 0.00 0.00 4.30
4003 5771 2.726821 ACGTACCCTCATAGACCGAAA 58.273 47.619 0.00 0.00 0.00 3.46
4004 5772 2.686915 ACGTACCCTCATAGACCGAAAG 59.313 50.000 0.00 0.00 0.00 2.62
4005 5773 2.543238 CGTACCCTCATAGACCGAAAGC 60.543 54.545 0.00 0.00 0.00 3.51
4006 5774 0.460311 ACCCTCATAGACCGAAAGCG 59.540 55.000 0.00 0.00 37.24 4.68
4031 5799 2.503943 GTTGAGTAACGCGGTTGATG 57.496 50.000 12.47 0.00 0.00 3.07
4032 5800 1.796459 GTTGAGTAACGCGGTTGATGT 59.204 47.619 12.47 0.00 0.00 3.06
4033 5801 2.988493 GTTGAGTAACGCGGTTGATGTA 59.012 45.455 12.47 0.00 0.00 2.29
4034 5802 2.871133 TGAGTAACGCGGTTGATGTAG 58.129 47.619 12.47 0.00 0.00 2.74
4035 5803 2.229543 TGAGTAACGCGGTTGATGTAGT 59.770 45.455 12.47 0.00 0.00 2.73
4036 5804 2.850647 GAGTAACGCGGTTGATGTAGTC 59.149 50.000 12.47 0.00 0.00 2.59
4037 5805 1.580704 GTAACGCGGTTGATGTAGTCG 59.419 52.381 12.47 0.00 0.00 4.18
4038 5806 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
4039 5807 0.241749 ACGCGGTTGATGTAGTCGAA 59.758 50.000 12.47 0.00 0.00 3.71
4040 5808 0.638746 CGCGGTTGATGTAGTCGAAC 59.361 55.000 0.00 0.00 0.00 3.95
4042 5810 1.973138 CGGTTGATGTAGTCGAACGT 58.027 50.000 0.00 0.00 44.71 3.99
4043 5811 1.909532 CGGTTGATGTAGTCGAACGTC 59.090 52.381 3.01 3.01 44.71 4.34
4044 5812 2.413765 CGGTTGATGTAGTCGAACGTCT 60.414 50.000 10.09 0.00 44.71 4.18
4045 5813 3.572584 GGTTGATGTAGTCGAACGTCTT 58.427 45.455 10.09 0.00 36.53 3.01
4046 5814 3.607209 GGTTGATGTAGTCGAACGTCTTC 59.393 47.826 10.09 4.37 36.53 2.87
4053 5821 3.286669 CGAACGTCTTCGCGATCC 58.713 61.111 10.88 0.00 42.72 3.36
4054 5822 1.513373 CGAACGTCTTCGCGATCCA 60.513 57.895 10.88 0.00 42.72 3.41
4055 5823 1.068832 CGAACGTCTTCGCGATCCAA 61.069 55.000 10.88 0.00 42.72 3.53
4056 5824 0.365859 GAACGTCTTCGCGATCCAAC 59.634 55.000 10.88 5.11 41.18 3.77
4057 5825 1.012486 AACGTCTTCGCGATCCAACC 61.012 55.000 10.88 0.00 41.18 3.77
4058 5826 2.505498 CGTCTTCGCGATCCAACCG 61.505 63.158 10.88 3.09 0.00 4.44
4059 5827 1.153901 GTCTTCGCGATCCAACCGA 60.154 57.895 10.88 0.00 0.00 4.69
4060 5828 0.527817 GTCTTCGCGATCCAACCGAT 60.528 55.000 10.88 0.00 0.00 4.18
4061 5829 0.174845 TCTTCGCGATCCAACCGATT 59.825 50.000 10.88 0.00 0.00 3.34
4062 5830 0.577269 CTTCGCGATCCAACCGATTC 59.423 55.000 10.88 0.00 0.00 2.52
4063 5831 0.108567 TTCGCGATCCAACCGATTCA 60.109 50.000 10.88 0.00 0.00 2.57
4064 5832 0.108567 TCGCGATCCAACCGATTCAA 60.109 50.000 3.71 0.00 0.00 2.69
4065 5833 0.301687 CGCGATCCAACCGATTCAAG 59.698 55.000 0.00 0.00 0.00 3.02
4066 5834 1.369625 GCGATCCAACCGATTCAAGT 58.630 50.000 0.00 0.00 0.00 3.16
4067 5835 2.546778 GCGATCCAACCGATTCAAGTA 58.453 47.619 0.00 0.00 0.00 2.24
4068 5836 2.284417 GCGATCCAACCGATTCAAGTAC 59.716 50.000 0.00 0.00 0.00 2.73
4069 5837 2.864343 CGATCCAACCGATTCAAGTACC 59.136 50.000 0.00 0.00 0.00 3.34
4070 5838 3.677700 CGATCCAACCGATTCAAGTACCA 60.678 47.826 0.00 0.00 0.00 3.25
4071 5839 3.773418 TCCAACCGATTCAAGTACCAA 57.227 42.857 0.00 0.00 0.00 3.67
4072 5840 4.088056 TCCAACCGATTCAAGTACCAAA 57.912 40.909 0.00 0.00 0.00 3.28
4073 5841 3.816523 TCCAACCGATTCAAGTACCAAAC 59.183 43.478 0.00 0.00 0.00 2.93
4074 5842 3.364565 CCAACCGATTCAAGTACCAAACG 60.365 47.826 0.00 0.00 0.00 3.60
4075 5843 3.116079 ACCGATTCAAGTACCAAACGT 57.884 42.857 0.00 0.00 0.00 3.99
4076 5844 4.255833 ACCGATTCAAGTACCAAACGTA 57.744 40.909 0.00 0.00 0.00 3.57
4077 5845 3.989817 ACCGATTCAAGTACCAAACGTAC 59.010 43.478 0.00 0.00 46.69 3.67
4083 5851 2.153039 GTACCAAACGTACGGCACC 58.847 57.895 21.06 0.00 38.17 5.01
4084 5852 0.319813 GTACCAAACGTACGGCACCT 60.320 55.000 21.06 1.22 38.17 4.00
4085 5853 0.392336 TACCAAACGTACGGCACCTT 59.608 50.000 21.06 0.69 0.00 3.50
4086 5854 0.881600 ACCAAACGTACGGCACCTTC 60.882 55.000 21.06 0.00 0.00 3.46
4087 5855 1.489824 CAAACGTACGGCACCTTCG 59.510 57.895 21.06 0.00 0.00 3.79
4088 5856 2.312436 AAACGTACGGCACCTTCGC 61.312 57.895 21.06 0.00 0.00 4.70
4090 5858 4.764336 CGTACGGCACCTTCGCGA 62.764 66.667 3.71 3.71 0.00 5.87
4091 5859 2.202703 GTACGGCACCTTCGCGAT 60.203 61.111 10.88 0.00 0.00 4.58
4092 5860 2.103538 TACGGCACCTTCGCGATC 59.896 61.111 10.88 0.00 0.00 3.69
4093 5861 2.412323 TACGGCACCTTCGCGATCT 61.412 57.895 10.88 0.00 0.00 2.75
4094 5862 2.607668 TACGGCACCTTCGCGATCTG 62.608 60.000 10.88 6.73 0.00 2.90
4095 5863 3.567797 GGCACCTTCGCGATCTGC 61.568 66.667 10.88 16.59 41.47 4.26
4096 5864 2.815211 GCACCTTCGCGATCTGCA 60.815 61.111 21.61 3.11 46.97 4.41
4097 5865 3.084579 CACCTTCGCGATCTGCAC 58.915 61.111 10.88 0.00 46.97 4.57
4098 5866 1.737735 CACCTTCGCGATCTGCACA 60.738 57.895 10.88 0.00 46.97 4.57
4099 5867 1.738099 ACCTTCGCGATCTGCACAC 60.738 57.895 10.88 0.00 46.97 3.82
4100 5868 2.691522 CTTCGCGATCTGCACACG 59.308 61.111 10.88 0.00 46.97 4.49
4101 5869 2.049526 TTCGCGATCTGCACACGT 60.050 55.556 10.88 0.00 46.97 4.49
4102 5870 1.617755 CTTCGCGATCTGCACACGTT 61.618 55.000 10.88 0.00 46.97 3.99
4103 5871 1.614227 TTCGCGATCTGCACACGTTC 61.614 55.000 10.88 0.00 46.97 3.95
4104 5872 2.371923 CGCGATCTGCACACGTTCA 61.372 57.895 0.00 0.00 46.97 3.18
4105 5873 1.417592 GCGATCTGCACACGTTCAG 59.582 57.895 4.93 0.00 45.45 3.02
4106 5874 1.417592 CGATCTGCACACGTTCAGC 59.582 57.895 4.78 1.26 0.00 4.26
4107 5875 1.010935 CGATCTGCACACGTTCAGCT 61.011 55.000 5.40 0.00 0.00 4.24
4108 5876 1.151668 GATCTGCACACGTTCAGCTT 58.848 50.000 5.40 0.00 0.00 3.74
4109 5877 0.870393 ATCTGCACACGTTCAGCTTG 59.130 50.000 5.40 0.00 0.00 4.01
4110 5878 1.159713 TCTGCACACGTTCAGCTTGG 61.160 55.000 5.40 0.00 0.00 3.61
4111 5879 1.439353 CTGCACACGTTCAGCTTGGT 61.439 55.000 5.40 0.00 0.00 3.67
4112 5880 1.009675 GCACACGTTCAGCTTGGTG 60.010 57.895 0.00 0.00 36.50 4.17
4113 5881 1.436195 GCACACGTTCAGCTTGGTGA 61.436 55.000 9.44 0.00 34.59 4.02
4114 5882 0.304705 CACACGTTCAGCTTGGTGAC 59.695 55.000 1.72 0.00 34.59 3.67
4115 5883 1.151777 ACACGTTCAGCTTGGTGACG 61.152 55.000 16.58 16.58 34.59 4.35
4116 5884 1.143183 ACGTTCAGCTTGGTGACGT 59.857 52.632 17.45 17.45 32.81 4.34
4117 5885 0.874607 ACGTTCAGCTTGGTGACGTC 60.875 55.000 9.11 9.11 32.45 4.34
4118 5886 1.557443 CGTTCAGCTTGGTGACGTCC 61.557 60.000 14.12 4.20 0.00 4.79
4119 5887 1.070786 TTCAGCTTGGTGACGTCCC 59.929 57.895 14.12 14.15 0.00 4.46
4120 5888 1.407656 TTCAGCTTGGTGACGTCCCT 61.408 55.000 14.12 0.00 0.00 4.20
4121 5889 1.374758 CAGCTTGGTGACGTCCCTC 60.375 63.158 14.12 3.54 0.00 4.30
4122 5890 2.432628 GCTTGGTGACGTCCCTCG 60.433 66.667 14.12 9.74 46.00 4.63
4123 5891 2.432628 CTTGGTGACGTCCCTCGC 60.433 66.667 14.12 0.00 44.19 5.03
4124 5892 3.220999 CTTGGTGACGTCCCTCGCA 62.221 63.158 14.12 0.00 44.19 5.10
4125 5893 3.509137 TTGGTGACGTCCCTCGCAC 62.509 63.158 14.12 3.50 44.19 5.34
4126 5894 3.681835 GGTGACGTCCCTCGCACT 61.682 66.667 14.12 0.00 44.19 4.40
4127 5895 2.126424 GTGACGTCCCTCGCACTC 60.126 66.667 14.12 0.00 44.19 3.51
4128 5896 2.282251 TGACGTCCCTCGCACTCT 60.282 61.111 14.12 0.00 44.19 3.24
4129 5897 1.901948 TGACGTCCCTCGCACTCTT 60.902 57.895 14.12 0.00 44.19 2.85
4130 5898 1.444553 GACGTCCCTCGCACTCTTG 60.445 63.158 3.51 0.00 44.19 3.02
4131 5899 1.863662 GACGTCCCTCGCACTCTTGA 61.864 60.000 3.51 0.00 44.19 3.02
4132 5900 1.251527 ACGTCCCTCGCACTCTTGAT 61.252 55.000 0.00 0.00 44.19 2.57
4133 5901 0.526524 CGTCCCTCGCACTCTTGATC 60.527 60.000 0.00 0.00 0.00 2.92
4134 5902 0.179097 GTCCCTCGCACTCTTGATCC 60.179 60.000 0.00 0.00 0.00 3.36
4135 5903 0.614697 TCCCTCGCACTCTTGATCCA 60.615 55.000 0.00 0.00 0.00 3.41
4136 5904 0.179089 CCCTCGCACTCTTGATCCAG 60.179 60.000 0.00 0.00 0.00 3.86
4137 5905 0.534412 CCTCGCACTCTTGATCCAGT 59.466 55.000 0.00 0.00 0.00 4.00
4138 5906 1.066573 CCTCGCACTCTTGATCCAGTT 60.067 52.381 0.00 0.00 0.00 3.16
4139 5907 1.998315 CTCGCACTCTTGATCCAGTTG 59.002 52.381 0.00 0.00 0.00 3.16
4140 5908 1.618343 TCGCACTCTTGATCCAGTTGA 59.382 47.619 0.00 0.00 0.00 3.18
4141 5909 1.998315 CGCACTCTTGATCCAGTTGAG 59.002 52.381 0.00 0.00 0.00 3.02
4142 5910 2.354259 GCACTCTTGATCCAGTTGAGG 58.646 52.381 0.00 0.00 0.00 3.86
4143 5911 2.354259 CACTCTTGATCCAGTTGAGGC 58.646 52.381 0.00 0.00 0.00 4.70
4144 5912 1.280421 ACTCTTGATCCAGTTGAGGCC 59.720 52.381 0.00 0.00 0.00 5.19
4145 5913 0.250234 TCTTGATCCAGTTGAGGCCG 59.750 55.000 0.00 0.00 0.00 6.13
4146 5914 0.250234 CTTGATCCAGTTGAGGCCGA 59.750 55.000 0.00 0.00 0.00 5.54
4147 5915 0.250234 TTGATCCAGTTGAGGCCGAG 59.750 55.000 0.00 0.00 0.00 4.63
4148 5916 1.144936 GATCCAGTTGAGGCCGAGG 59.855 63.158 0.00 0.00 0.00 4.63
4149 5917 2.317149 GATCCAGTTGAGGCCGAGGG 62.317 65.000 0.00 0.00 0.00 4.30
4150 5918 2.822643 ATCCAGTTGAGGCCGAGGGA 62.823 60.000 0.00 0.06 0.00 4.20
4151 5919 2.581354 CAGTTGAGGCCGAGGGAG 59.419 66.667 0.00 0.00 0.00 4.30
4152 5920 1.984570 CAGTTGAGGCCGAGGGAGA 60.985 63.158 0.00 0.00 0.00 3.71
4153 5921 1.684049 AGTTGAGGCCGAGGGAGAG 60.684 63.158 0.00 0.00 0.00 3.20
4154 5922 1.985116 GTTGAGGCCGAGGGAGAGT 60.985 63.158 0.00 0.00 0.00 3.24
4155 5923 1.229209 TTGAGGCCGAGGGAGAGTT 60.229 57.895 0.00 0.00 0.00 3.01
4156 5924 1.258445 TTGAGGCCGAGGGAGAGTTC 61.258 60.000 0.00 0.00 0.00 3.01
4157 5925 2.364448 AGGCCGAGGGAGAGTTCC 60.364 66.667 0.00 0.00 43.23 3.62
4158 5926 3.839432 GGCCGAGGGAGAGTTCCG 61.839 72.222 0.00 0.00 45.04 4.30
4159 5927 3.069318 GCCGAGGGAGAGTTCCGT 61.069 66.667 0.00 0.00 45.04 4.69
4163 5931 3.701454 AGGGAGAGTTCCGTCAGC 58.299 61.111 0.00 0.00 45.04 4.26
4164 5932 1.228894 AGGGAGAGTTCCGTCAGCA 60.229 57.895 0.00 0.00 45.04 4.41
4165 5933 1.079750 GGGAGAGTTCCGTCAGCAC 60.080 63.158 0.00 0.00 45.04 4.40
4166 5934 1.444553 GGAGAGTTCCGTCAGCACG 60.445 63.158 0.00 0.00 46.29 5.34
4178 5946 2.046892 AGCACGATGGCTGGTGAC 60.047 61.111 7.21 0.45 43.89 3.67
4179 5947 3.490759 GCACGATGGCTGGTGACG 61.491 66.667 7.21 0.00 36.25 4.35
4180 5948 2.815211 CACGATGGCTGGTGACGG 60.815 66.667 0.00 0.00 36.25 4.79
4181 5949 3.311110 ACGATGGCTGGTGACGGT 61.311 61.111 0.00 0.00 39.64 4.83
4182 5950 2.815211 CGATGGCTGGTGACGGTG 60.815 66.667 0.00 0.00 39.64 4.94
4183 5951 2.662596 GATGGCTGGTGACGGTGA 59.337 61.111 0.00 0.00 39.64 4.02
4184 5952 1.221840 GATGGCTGGTGACGGTGAT 59.778 57.895 0.00 0.00 39.64 3.06
4185 5953 1.078214 ATGGCTGGTGACGGTGATG 60.078 57.895 0.00 0.00 39.64 3.07
4186 5954 1.552799 ATGGCTGGTGACGGTGATGA 61.553 55.000 0.00 0.00 39.64 2.92
4187 5955 1.221840 GGCTGGTGACGGTGATGAT 59.778 57.895 0.00 0.00 39.64 2.45
4188 5956 1.091771 GGCTGGTGACGGTGATGATG 61.092 60.000 0.00 0.00 39.64 3.07
4189 5957 0.108186 GCTGGTGACGGTGATGATGA 60.108 55.000 0.00 0.00 39.64 2.92
4190 5958 1.675714 GCTGGTGACGGTGATGATGAA 60.676 52.381 0.00 0.00 39.64 2.57
4191 5959 2.274437 CTGGTGACGGTGATGATGAAG 58.726 52.381 0.00 0.00 0.00 3.02
4192 5960 1.623311 TGGTGACGGTGATGATGAAGT 59.377 47.619 0.00 0.00 0.00 3.01
4193 5961 2.038426 TGGTGACGGTGATGATGAAGTT 59.962 45.455 0.00 0.00 0.00 2.66
4194 5962 3.259625 TGGTGACGGTGATGATGAAGTTA 59.740 43.478 0.00 0.00 0.00 2.24
4195 5963 3.617263 GGTGACGGTGATGATGAAGTTAC 59.383 47.826 0.00 0.00 0.00 2.50
4196 5964 4.495422 GTGACGGTGATGATGAAGTTACT 58.505 43.478 0.00 0.00 0.00 2.24
4197 5965 4.327357 GTGACGGTGATGATGAAGTTACTG 59.673 45.833 0.00 0.00 0.00 2.74
4198 5966 4.219725 TGACGGTGATGATGAAGTTACTGA 59.780 41.667 0.00 0.00 0.00 3.41
4199 5967 4.495422 ACGGTGATGATGAAGTTACTGAC 58.505 43.478 0.00 0.00 0.00 3.51
4200 5968 3.547868 CGGTGATGATGAAGTTACTGACG 59.452 47.826 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.722728 AGTGCAATGTTTCATCCATATAGTGAT 59.277 33.333 0.00 0.00 0.00 3.06
56 57 7.012610 CAGTGCAATGTTTCATCCATATAGTGA 59.987 37.037 5.87 0.00 0.00 3.41
65 66 1.404583 GCCCAGTGCAATGTTTCATCC 60.405 52.381 13.82 0.00 40.77 3.51
82 83 1.130561 GCCTTTTATCATATCGCGCCC 59.869 52.381 0.00 0.00 0.00 6.13
125 126 2.696989 AACAAAGGCTGCTGCTTTTT 57.303 40.000 20.52 15.25 44.37 1.94
158 159 3.584848 AGTCCTGCAATGGAGTTCTTACT 59.415 43.478 0.21 0.00 36.43 2.24
159 160 3.686726 CAGTCCTGCAATGGAGTTCTTAC 59.313 47.826 0.21 0.00 37.66 2.34
171 1532 3.326006 AGATGAGAAACTCAGTCCTGCAA 59.674 43.478 7.50 0.00 44.08 4.08
184 1549 8.511604 GGATATTCTCCACAAAAGATGAGAAA 57.488 34.615 5.06 0.00 44.41 2.52
231 1622 2.613026 TTCAGACGTTCCTTCTTGCA 57.387 45.000 0.00 0.00 0.00 4.08
291 1682 2.338577 AAGGTCATATGCAGTCAGGC 57.661 50.000 0.00 0.00 0.00 4.85
316 1843 3.070748 GCTTCAGAACTGTTCCTTCCTC 58.929 50.000 16.48 0.00 0.00 3.71
340 1867 2.014857 GTTTCCAGGTTCTATTCCGGC 58.985 52.381 0.00 0.00 0.00 6.13
362 1889 0.461548 CAAGGCTGCGTGATCCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
363 1890 1.220206 CAAGGCTGCGTGATCCTCT 59.780 57.895 0.00 0.00 0.00 3.69
364 1891 1.817099 CCAAGGCTGCGTGATCCTC 60.817 63.158 0.00 0.00 0.00 3.71
365 1892 2.270205 CCAAGGCTGCGTGATCCT 59.730 61.111 0.00 0.00 0.00 3.24
366 1893 3.512516 GCCAAGGCTGCGTGATCC 61.513 66.667 3.29 0.00 38.26 3.36
367 1894 3.512516 GGCCAAGGCTGCGTGATC 61.513 66.667 11.40 0.00 41.60 2.92
389 1916 3.139077 GACAGGTCAAATTTCTCGTGGT 58.861 45.455 12.95 0.00 0.00 4.16
411 1938 1.006102 CTGTCAAACGGAGAGCGGT 60.006 57.895 0.00 0.00 29.21 5.68
506 2039 2.917227 GGTGGTGCCAACTTGGGG 60.917 66.667 9.95 0.00 38.19 4.96
810 2366 4.619394 CGGAGCTTTATATAGCAGGGTCAG 60.619 50.000 16.19 3.67 43.68 3.51
812 2368 3.258622 ACGGAGCTTTATATAGCAGGGTC 59.741 47.826 16.19 5.93 43.68 4.46
906 2464 1.055849 TGCTAACCCTTGTCAGCTCA 58.944 50.000 0.00 0.00 35.05 4.26
912 2470 5.106277 GGTAATCACTTTGCTAACCCTTGTC 60.106 44.000 0.00 0.00 0.00 3.18
937 2514 0.969894 ATAGATTTCTCGGAGGCGGG 59.030 55.000 4.96 0.00 0.00 6.13
1056 2664 3.478274 GGCAGCAGAGGAGGAGGG 61.478 72.222 0.00 0.00 0.00 4.30
1098 2728 4.051237 GGTTCTTGACTTGGCATTTCAAC 58.949 43.478 7.09 0.57 0.00 3.18
1108 2738 3.611057 GCAGAAGCATGGTTCTTGACTTG 60.611 47.826 32.13 22.58 41.58 3.16
1141 2771 4.696455 AGGCAAACAAATGTTCTTCTTGG 58.304 39.130 0.00 0.00 37.25 3.61
1158 2788 7.510685 ACTTAGATTCTGTCTATATGGAGGCAA 59.489 37.037 0.00 0.00 39.14 4.52
1160 2790 7.475137 ACTTAGATTCTGTCTATATGGAGGC 57.525 40.000 0.00 0.00 39.14 4.70
1183 2817 7.593644 ACGCAAGAATTAACCATGTTCTTTAAC 59.406 33.333 5.71 0.27 39.46 2.01
1219 2855 5.034797 GTGTTAAAAACCTTCAGTGCTGAC 58.965 41.667 0.79 0.00 39.66 3.51
1221 2857 4.035017 CGTGTTAAAAACCTTCAGTGCTG 58.965 43.478 0.00 0.00 0.00 4.41
1223 2859 3.789224 CACGTGTTAAAAACCTTCAGTGC 59.211 43.478 7.58 0.00 0.00 4.40
1224 2860 5.224562 TCACGTGTTAAAAACCTTCAGTG 57.775 39.130 16.51 0.00 0.00 3.66
1225 2861 6.445357 AATCACGTGTTAAAAACCTTCAGT 57.555 33.333 16.51 0.00 0.00 3.41
1349 2992 7.384115 TGTTAGGAACGAGAACAAAATCTGTAG 59.616 37.037 0.00 0.00 37.23 2.74
1358 3030 5.468746 CAGGAATTGTTAGGAACGAGAACAA 59.531 40.000 2.25 2.25 44.63 2.83
1613 3303 0.543277 TGCTCTCCAGGCATTCGAAT 59.457 50.000 4.39 4.39 34.56 3.34
2012 3708 3.666253 TCGTCGAACTGCTCCGCA 61.666 61.111 0.00 0.00 36.92 5.69
2381 4077 2.631418 CGAGGAACTTGAAGTCGCTA 57.369 50.000 0.00 0.00 44.22 4.26
2411 4107 1.239296 TGTCCGACTCCGTGACGATT 61.239 55.000 6.54 0.00 38.17 3.34
2449 4145 4.070552 GCTTCCACGAGGTCGCCT 62.071 66.667 0.00 0.00 44.43 5.52
2474 4176 0.902516 GCTCCTCCACCTGAGTCACT 60.903 60.000 0.00 0.00 39.65 3.41
2891 4602 3.059982 CAGAACACCTCTCCGCCA 58.940 61.111 0.00 0.00 29.07 5.69
3026 4737 3.371097 GAAGGCCTCCACGATCGCA 62.371 63.158 16.60 0.00 0.00 5.10
3029 4740 4.522971 GTGAAGGCCTCCACGATC 57.477 61.111 6.29 0.00 0.00 3.69
3240 4955 8.883731 CCTAATTACTCTTTCCTGTGTAATGTG 58.116 37.037 0.00 0.00 36.99 3.21
3277 4992 6.098552 GGTCTGGCTACTCCTAATTACTCTTT 59.901 42.308 0.00 0.00 35.26 2.52
3278 4993 5.599242 GGTCTGGCTACTCCTAATTACTCTT 59.401 44.000 0.00 0.00 35.26 2.85
3279 4994 5.141910 GGTCTGGCTACTCCTAATTACTCT 58.858 45.833 0.00 0.00 35.26 3.24
3280 4995 4.281435 GGGTCTGGCTACTCCTAATTACTC 59.719 50.000 0.00 0.00 35.26 2.59
3281 4996 4.224762 GGGTCTGGCTACTCCTAATTACT 58.775 47.826 0.00 0.00 35.26 2.24
3282 4997 3.324268 GGGGTCTGGCTACTCCTAATTAC 59.676 52.174 2.60 0.00 37.02 1.89
3283 4998 3.584294 GGGGTCTGGCTACTCCTAATTA 58.416 50.000 2.60 0.00 37.02 1.40
3284 4999 2.409570 GGGGTCTGGCTACTCCTAATT 58.590 52.381 2.60 0.00 37.02 1.40
3285 5000 1.758123 CGGGGTCTGGCTACTCCTAAT 60.758 57.143 7.69 0.00 37.92 1.73
3286 5001 0.396695 CGGGGTCTGGCTACTCCTAA 60.397 60.000 7.69 0.00 37.92 2.69
3287 5002 1.229359 CGGGGTCTGGCTACTCCTA 59.771 63.158 7.69 0.00 37.92 2.94
3288 5003 2.042843 CGGGGTCTGGCTACTCCT 60.043 66.667 7.69 0.00 37.92 3.69
3289 5004 3.851128 GCGGGGTCTGGCTACTCC 61.851 72.222 0.00 0.00 36.58 3.85
3290 5005 2.180159 TTTGCGGGGTCTGGCTACTC 62.180 60.000 0.00 0.00 0.00 2.59
3291 5006 1.774894 TTTTGCGGGGTCTGGCTACT 61.775 55.000 0.00 0.00 0.00 2.57
3292 5007 0.679960 ATTTTGCGGGGTCTGGCTAC 60.680 55.000 0.00 0.00 0.00 3.58
3293 5008 0.393808 GATTTTGCGGGGTCTGGCTA 60.394 55.000 0.00 0.00 0.00 3.93
3294 5009 1.678970 GATTTTGCGGGGTCTGGCT 60.679 57.895 0.00 0.00 0.00 4.75
3295 5010 2.885113 GATTTTGCGGGGTCTGGC 59.115 61.111 0.00 0.00 0.00 4.85
3296 5011 1.644786 GACGATTTTGCGGGGTCTGG 61.645 60.000 0.00 0.00 35.12 3.86
3297 5012 0.953471 TGACGATTTTGCGGGGTCTG 60.953 55.000 0.00 0.00 35.12 3.51
3298 5013 0.250553 TTGACGATTTTGCGGGGTCT 60.251 50.000 0.00 0.00 35.12 3.85
3314 5029 1.270041 GCTGGAATTTTGCGGGTTTGA 60.270 47.619 0.00 0.00 0.00 2.69
3346 5061 1.369321 GCCACAAAATTGGGCCGAA 59.631 52.632 1.41 1.41 38.07 4.30
3360 5075 2.435059 GAGCTCGGTTCTGGCCAC 60.435 66.667 0.00 0.00 0.00 5.01
3376 5091 3.289834 GGCCGGGCGAGTATACGA 61.290 66.667 14.21 0.00 35.09 3.43
3418 5133 3.012722 CTGGGGGAGGGCGGTTTA 61.013 66.667 0.00 0.00 0.00 2.01
3465 5187 1.969208 GGGGATAGGGTTTCGACCTAG 59.031 57.143 6.46 0.00 43.40 3.02
3466 5188 1.577242 AGGGGATAGGGTTTCGACCTA 59.423 52.381 3.00 3.00 44.22 3.08
3512 5235 4.281182 GCGAGAAATATGAGAAGGGGAGTA 59.719 45.833 0.00 0.00 0.00 2.59
3831 5588 2.606587 CCTCCAACCACCCCCTCTG 61.607 68.421 0.00 0.00 0.00 3.35
3838 5595 1.889530 CTCGACCTCCTCCAACCACC 61.890 65.000 0.00 0.00 0.00 4.61
3844 5601 0.395862 GATGACCTCGACCTCCTCCA 60.396 60.000 0.00 0.00 0.00 3.86
3865 5622 2.125350 GTCGGGCTCCTGCTTGAG 60.125 66.667 0.00 0.00 39.59 3.02
3882 5650 1.811266 CCCCAACAGCACGATCTCG 60.811 63.158 0.00 0.00 46.33 4.04
3893 5661 2.156098 GAAATACTGCGTTCCCCAACA 58.844 47.619 0.00 0.00 32.14 3.33
3894 5662 2.156098 TGAAATACTGCGTTCCCCAAC 58.844 47.619 0.00 0.00 0.00 3.77
3895 5663 2.570415 TGAAATACTGCGTTCCCCAA 57.430 45.000 0.00 0.00 0.00 4.12
3896 5664 2.570415 TTGAAATACTGCGTTCCCCA 57.430 45.000 0.00 0.00 0.00 4.96
3897 5665 3.926821 TTTTGAAATACTGCGTTCCCC 57.073 42.857 0.00 0.00 0.00 4.81
3917 5685 5.794687 TCTTGCGTGATCGTATGATTTTT 57.205 34.783 0.00 0.00 39.49 1.94
3918 5686 5.755375 AGATCTTGCGTGATCGTATGATTTT 59.245 36.000 11.44 0.63 45.35 1.82
3919 5687 5.292765 AGATCTTGCGTGATCGTATGATTT 58.707 37.500 11.44 1.99 45.35 2.17
3920 5688 4.876125 AGATCTTGCGTGATCGTATGATT 58.124 39.130 11.44 0.00 45.35 2.57
3921 5689 4.511617 AGATCTTGCGTGATCGTATGAT 57.488 40.909 11.44 0.00 45.35 2.45
3922 5690 3.990318 AGATCTTGCGTGATCGTATGA 57.010 42.857 11.44 0.00 45.35 2.15
3923 5691 5.635866 AGATAGATCTTGCGTGATCGTATG 58.364 41.667 0.00 0.00 45.35 2.39
3924 5692 5.888691 AGATAGATCTTGCGTGATCGTAT 57.111 39.130 0.00 9.90 45.35 3.06
3925 5693 5.351740 CCTAGATAGATCTTGCGTGATCGTA 59.648 44.000 0.00 6.70 45.35 3.43
3926 5694 4.155099 CCTAGATAGATCTTGCGTGATCGT 59.845 45.833 0.00 6.35 45.35 3.73
3927 5695 4.393371 TCCTAGATAGATCTTGCGTGATCG 59.607 45.833 0.00 0.00 45.35 3.69
3928 5696 5.888691 TCCTAGATAGATCTTGCGTGATC 57.111 43.478 0.00 9.82 42.18 2.92
3929 5697 7.469870 GCATATCCTAGATAGATCTTGCGTGAT 60.470 40.741 0.00 0.00 38.32 3.06
3930 5698 6.183360 GCATATCCTAGATAGATCTTGCGTGA 60.183 42.308 0.00 0.00 38.32 4.35
3931 5699 5.976534 GCATATCCTAGATAGATCTTGCGTG 59.023 44.000 0.00 0.00 38.32 5.34
3932 5700 5.654209 TGCATATCCTAGATAGATCTTGCGT 59.346 40.000 0.00 0.00 36.51 5.24
3933 5701 6.141560 TGCATATCCTAGATAGATCTTGCG 57.858 41.667 0.00 0.00 36.51 4.85
3934 5702 7.814107 GCTATGCATATCCTAGATAGATCTTGC 59.186 40.741 6.92 0.69 38.32 4.01
3935 5703 8.858094 TGCTATGCATATCCTAGATAGATCTTG 58.142 37.037 6.92 0.00 34.23 3.02
3936 5704 9.431690 TTGCTATGCATATCCTAGATAGATCTT 57.568 33.333 6.92 0.00 38.76 2.40
3937 5705 8.859090 GTTGCTATGCATATCCTAGATAGATCT 58.141 37.037 6.92 0.00 38.76 2.75
3938 5706 7.807433 CGTTGCTATGCATATCCTAGATAGATC 59.193 40.741 6.92 0.00 38.76 2.75
3939 5707 7.503902 TCGTTGCTATGCATATCCTAGATAGAT 59.496 37.037 6.92 0.00 38.76 1.98
3940 5708 6.828785 TCGTTGCTATGCATATCCTAGATAGA 59.171 38.462 6.92 0.00 38.76 1.98
3941 5709 7.012799 TCTCGTTGCTATGCATATCCTAGATAG 59.987 40.741 6.92 0.00 38.76 2.08
3942 5710 6.828785 TCTCGTTGCTATGCATATCCTAGATA 59.171 38.462 6.92 0.00 38.76 1.98
3943 5711 5.654209 TCTCGTTGCTATGCATATCCTAGAT 59.346 40.000 6.92 0.00 38.76 1.98
3944 5712 5.010282 TCTCGTTGCTATGCATATCCTAGA 58.990 41.667 6.92 4.31 38.76 2.43
3945 5713 5.316327 TCTCGTTGCTATGCATATCCTAG 57.684 43.478 6.92 0.00 38.76 3.02
3946 5714 5.336770 CCTTCTCGTTGCTATGCATATCCTA 60.337 44.000 6.92 0.00 38.76 2.94
3947 5715 4.562347 CCTTCTCGTTGCTATGCATATCCT 60.562 45.833 6.92 0.00 38.76 3.24
3948 5716 3.681897 CCTTCTCGTTGCTATGCATATCC 59.318 47.826 6.92 2.32 38.76 2.59
3949 5717 3.681897 CCCTTCTCGTTGCTATGCATATC 59.318 47.826 6.92 3.45 38.76 1.63
3950 5718 3.324846 TCCCTTCTCGTTGCTATGCATAT 59.675 43.478 6.92 0.00 38.76 1.78
3951 5719 2.698274 TCCCTTCTCGTTGCTATGCATA 59.302 45.455 6.20 6.20 38.76 3.14
3952 5720 1.486310 TCCCTTCTCGTTGCTATGCAT 59.514 47.619 3.79 3.79 38.76 3.96
3953 5721 0.901827 TCCCTTCTCGTTGCTATGCA 59.098 50.000 0.00 0.00 36.47 3.96
3954 5722 1.137086 TCTCCCTTCTCGTTGCTATGC 59.863 52.381 0.00 0.00 0.00 3.14
3955 5723 2.428890 ACTCTCCCTTCTCGTTGCTATG 59.571 50.000 0.00 0.00 0.00 2.23
3956 5724 2.428890 CACTCTCCCTTCTCGTTGCTAT 59.571 50.000 0.00 0.00 0.00 2.97
3957 5725 1.819288 CACTCTCCCTTCTCGTTGCTA 59.181 52.381 0.00 0.00 0.00 3.49
3958 5726 0.605589 CACTCTCCCTTCTCGTTGCT 59.394 55.000 0.00 0.00 0.00 3.91
3959 5727 0.318762 ACACTCTCCCTTCTCGTTGC 59.681 55.000 0.00 0.00 0.00 4.17
3960 5728 1.341531 ACACACTCTCCCTTCTCGTTG 59.658 52.381 0.00 0.00 0.00 4.10
3961 5729 1.614413 GACACACTCTCCCTTCTCGTT 59.386 52.381 0.00 0.00 0.00 3.85
3962 5730 1.202952 AGACACACTCTCCCTTCTCGT 60.203 52.381 0.00 0.00 0.00 4.18
3963 5731 1.540267 AGACACACTCTCCCTTCTCG 58.460 55.000 0.00 0.00 0.00 4.04
3964 5732 2.420722 CGTAGACACACTCTCCCTTCTC 59.579 54.545 0.00 0.00 0.00 2.87
3965 5733 2.224818 ACGTAGACACACTCTCCCTTCT 60.225 50.000 0.00 0.00 0.00 2.85
3966 5734 2.161030 ACGTAGACACACTCTCCCTTC 58.839 52.381 0.00 0.00 0.00 3.46
3967 5735 2.289592 ACGTAGACACACTCTCCCTT 57.710 50.000 0.00 0.00 0.00 3.95
3968 5736 2.617532 GGTACGTAGACACACTCTCCCT 60.618 54.545 0.00 0.00 0.00 4.20
3969 5737 1.742268 GGTACGTAGACACACTCTCCC 59.258 57.143 0.00 0.00 0.00 4.30
3970 5738 1.742268 GGGTACGTAGACACACTCTCC 59.258 57.143 0.00 0.00 0.00 3.71
3971 5739 2.677337 GAGGGTACGTAGACACACTCTC 59.323 54.545 10.55 4.79 41.06 3.20
3972 5740 2.039480 TGAGGGTACGTAGACACACTCT 59.961 50.000 17.06 3.13 43.29 3.24
3973 5741 2.430465 TGAGGGTACGTAGACACACTC 58.570 52.381 10.85 10.85 43.23 3.51
3974 5742 2.574006 TGAGGGTACGTAGACACACT 57.426 50.000 0.00 0.00 32.99 3.55
3975 5743 4.194640 TCTATGAGGGTACGTAGACACAC 58.805 47.826 0.00 0.00 34.67 3.82
3976 5744 4.492494 TCTATGAGGGTACGTAGACACA 57.508 45.455 0.00 0.00 34.67 3.72
3980 5748 2.700371 TCGGTCTATGAGGGTACGTAGA 59.300 50.000 0.00 0.00 36.45 2.59
3981 5749 3.117491 TCGGTCTATGAGGGTACGTAG 57.883 52.381 0.00 0.00 0.00 3.51
3982 5750 3.558931 TTCGGTCTATGAGGGTACGTA 57.441 47.619 0.00 0.00 0.00 3.57
3983 5751 2.425143 TTCGGTCTATGAGGGTACGT 57.575 50.000 0.00 0.00 0.00 3.57
3984 5752 2.543238 GCTTTCGGTCTATGAGGGTACG 60.543 54.545 0.00 0.00 0.00 3.67
3985 5753 2.543238 CGCTTTCGGTCTATGAGGGTAC 60.543 54.545 0.00 0.00 0.00 3.34
3986 5754 1.679680 CGCTTTCGGTCTATGAGGGTA 59.320 52.381 0.00 0.00 0.00 3.69
3987 5755 0.460311 CGCTTTCGGTCTATGAGGGT 59.540 55.000 0.00 0.00 0.00 4.34
3988 5756 3.274393 CGCTTTCGGTCTATGAGGG 57.726 57.895 0.00 0.00 0.00 4.30
3999 5767 1.130613 CTCAACGCTTCCGCTTTCG 59.869 57.895 0.00 0.00 38.22 3.46
4000 5768 1.425412 TACTCAACGCTTCCGCTTTC 58.575 50.000 0.00 0.00 38.22 2.62
4001 5769 1.529865 GTTACTCAACGCTTCCGCTTT 59.470 47.619 0.00 0.00 38.22 3.51
4002 5770 1.145803 GTTACTCAACGCTTCCGCTT 58.854 50.000 0.00 0.00 38.22 4.68
4003 5771 2.823628 GTTACTCAACGCTTCCGCT 58.176 52.632 0.00 0.00 38.22 5.52
4012 5780 1.796459 ACATCAACCGCGTTACTCAAC 59.204 47.619 4.92 0.00 0.00 3.18
4013 5781 2.157834 ACATCAACCGCGTTACTCAA 57.842 45.000 4.92 0.00 0.00 3.02
4014 5782 2.229543 ACTACATCAACCGCGTTACTCA 59.770 45.455 4.92 0.00 0.00 3.41
4015 5783 2.850647 GACTACATCAACCGCGTTACTC 59.149 50.000 4.92 0.00 0.00 2.59
4016 5784 2.730090 CGACTACATCAACCGCGTTACT 60.730 50.000 4.92 0.00 0.00 2.24
4017 5785 1.580704 CGACTACATCAACCGCGTTAC 59.419 52.381 4.92 0.00 0.00 2.50
4018 5786 1.468127 TCGACTACATCAACCGCGTTA 59.532 47.619 4.92 0.00 0.00 3.18
4019 5787 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
4020 5788 0.241749 TTCGACTACATCAACCGCGT 59.758 50.000 4.92 0.00 0.00 6.01
4021 5789 0.638746 GTTCGACTACATCAACCGCG 59.361 55.000 0.00 0.00 0.00 6.46
4022 5790 0.638746 CGTTCGACTACATCAACCGC 59.361 55.000 0.00 0.00 0.00 5.68
4023 5791 1.909532 GACGTTCGACTACATCAACCG 59.090 52.381 0.00 0.00 0.00 4.44
4024 5792 3.213249 AGACGTTCGACTACATCAACC 57.787 47.619 0.00 0.00 0.00 3.77
4025 5793 4.802664 GAAGACGTTCGACTACATCAAC 57.197 45.455 0.00 0.00 0.00 3.18
4037 5805 0.365859 GTTGGATCGCGAAGACGTTC 59.634 55.000 15.24 4.43 41.98 3.95
4038 5806 1.012486 GGTTGGATCGCGAAGACGTT 61.012 55.000 15.24 0.00 41.98 3.99
4039 5807 1.445582 GGTTGGATCGCGAAGACGT 60.446 57.895 15.24 0.00 41.98 4.34
4040 5808 2.505498 CGGTTGGATCGCGAAGACG 61.505 63.158 15.24 8.74 42.93 4.18
4041 5809 0.527817 ATCGGTTGGATCGCGAAGAC 60.528 55.000 15.24 9.41 0.00 3.01
4042 5810 0.174845 AATCGGTTGGATCGCGAAGA 59.825 50.000 15.24 4.68 33.02 2.87
4043 5811 0.577269 GAATCGGTTGGATCGCGAAG 59.423 55.000 15.24 0.00 33.02 3.79
4044 5812 0.108567 TGAATCGGTTGGATCGCGAA 60.109 50.000 15.24 0.00 33.02 4.70
4045 5813 0.108567 TTGAATCGGTTGGATCGCGA 60.109 50.000 13.09 13.09 33.02 5.87
4046 5814 0.301687 CTTGAATCGGTTGGATCGCG 59.698 55.000 0.00 0.00 33.02 5.87
4047 5815 1.369625 ACTTGAATCGGTTGGATCGC 58.630 50.000 0.00 0.00 33.02 4.58
4048 5816 2.864343 GGTACTTGAATCGGTTGGATCG 59.136 50.000 0.00 0.00 33.02 3.69
4049 5817 3.869065 TGGTACTTGAATCGGTTGGATC 58.131 45.455 0.00 0.00 33.02 3.36
4050 5818 3.992943 TGGTACTTGAATCGGTTGGAT 57.007 42.857 0.00 0.00 36.78 3.41
4051 5819 3.773418 TTGGTACTTGAATCGGTTGGA 57.227 42.857 0.00 0.00 0.00 3.53
4052 5820 3.364565 CGTTTGGTACTTGAATCGGTTGG 60.365 47.826 0.00 0.00 0.00 3.77
4053 5821 3.249080 ACGTTTGGTACTTGAATCGGTTG 59.751 43.478 0.00 0.00 0.00 3.77
4054 5822 3.469739 ACGTTTGGTACTTGAATCGGTT 58.530 40.909 0.00 0.00 0.00 4.44
4055 5823 3.116079 ACGTTTGGTACTTGAATCGGT 57.884 42.857 0.00 0.00 0.00 4.69
4056 5824 4.572950 GTACGTTTGGTACTTGAATCGG 57.427 45.455 0.00 0.00 46.50 4.18
4065 5833 0.319813 AGGTGCCGTACGTTTGGTAC 60.320 55.000 15.21 15.48 46.54 3.34
4066 5834 0.392336 AAGGTGCCGTACGTTTGGTA 59.608 50.000 15.21 0.00 33.88 3.25
4067 5835 0.881600 GAAGGTGCCGTACGTTTGGT 60.882 55.000 15.21 0.00 37.50 3.67
4068 5836 1.864176 GAAGGTGCCGTACGTTTGG 59.136 57.895 15.21 0.00 37.50 3.28
4069 5837 1.489824 CGAAGGTGCCGTACGTTTG 59.510 57.895 15.21 1.47 37.50 2.93
4070 5838 2.312436 GCGAAGGTGCCGTACGTTT 61.312 57.895 15.21 0.43 37.50 3.60
4071 5839 2.735857 GCGAAGGTGCCGTACGTT 60.736 61.111 15.21 0.56 39.89 3.99
4073 5841 4.764336 TCGCGAAGGTGCCGTACG 62.764 66.667 6.20 8.69 0.00 3.67
4074 5842 2.202703 ATCGCGAAGGTGCCGTAC 60.203 61.111 15.24 0.00 0.00 3.67
4075 5843 2.103538 GATCGCGAAGGTGCCGTA 59.896 61.111 15.24 0.00 0.00 4.02
4076 5844 3.760035 AGATCGCGAAGGTGCCGT 61.760 61.111 15.24 0.00 0.00 5.68
4077 5845 3.257561 CAGATCGCGAAGGTGCCG 61.258 66.667 15.24 0.00 0.00 5.69
4078 5846 3.567797 GCAGATCGCGAAGGTGCC 61.568 66.667 22.99 10.35 0.00 5.01
4079 5847 2.815211 TGCAGATCGCGAAGGTGC 60.815 61.111 25.36 25.36 46.97 5.01
4080 5848 1.737735 TGTGCAGATCGCGAAGGTG 60.738 57.895 15.24 12.22 46.97 4.00
4081 5849 1.738099 GTGTGCAGATCGCGAAGGT 60.738 57.895 15.24 0.00 46.97 3.50
4082 5850 2.792290 CGTGTGCAGATCGCGAAGG 61.792 63.158 15.24 6.80 46.97 3.46
4083 5851 1.617755 AACGTGTGCAGATCGCGAAG 61.618 55.000 15.24 7.64 46.97 3.79
4084 5852 1.614227 GAACGTGTGCAGATCGCGAA 61.614 55.000 15.24 0.00 46.97 4.70
4085 5853 2.049526 AACGTGTGCAGATCGCGA 60.050 55.556 13.09 13.09 46.97 5.87
4086 5854 2.271024 CTGAACGTGTGCAGATCGCG 62.271 60.000 0.00 0.00 46.97 5.87
4087 5855 1.417592 CTGAACGTGTGCAGATCGC 59.582 57.895 1.46 3.07 42.89 4.58
4088 5856 1.010935 AGCTGAACGTGTGCAGATCG 61.011 55.000 12.25 0.00 34.06 3.69
4089 5857 1.136141 CAAGCTGAACGTGTGCAGATC 60.136 52.381 12.25 0.00 34.06 2.75
4090 5858 0.870393 CAAGCTGAACGTGTGCAGAT 59.130 50.000 12.25 2.09 34.06 2.90
4091 5859 1.159713 CCAAGCTGAACGTGTGCAGA 61.160 55.000 12.25 0.00 34.06 4.26
4092 5860 1.280746 CCAAGCTGAACGTGTGCAG 59.719 57.895 3.48 3.48 35.28 4.41
4093 5861 1.451207 ACCAAGCTGAACGTGTGCA 60.451 52.632 9.71 0.00 0.00 4.57
4094 5862 1.009675 CACCAAGCTGAACGTGTGC 60.010 57.895 0.00 0.00 0.00 4.57
4095 5863 0.304705 GTCACCAAGCTGAACGTGTG 59.695 55.000 0.00 0.00 0.00 3.82
4096 5864 1.151777 CGTCACCAAGCTGAACGTGT 61.152 55.000 0.00 0.00 0.00 4.49
4097 5865 1.151777 ACGTCACCAAGCTGAACGTG 61.152 55.000 10.25 4.47 31.30 4.49
4098 5866 0.874607 GACGTCACCAAGCTGAACGT 60.875 55.000 11.55 10.68 33.52 3.99
4099 5867 1.557443 GGACGTCACCAAGCTGAACG 61.557 60.000 18.91 0.00 0.00 3.95
4100 5868 1.228657 GGGACGTCACCAAGCTGAAC 61.229 60.000 18.91 0.00 0.00 3.18
4101 5869 1.070786 GGGACGTCACCAAGCTGAA 59.929 57.895 18.91 0.00 0.00 3.02
4102 5870 1.816863 GAGGGACGTCACCAAGCTGA 61.817 60.000 15.74 0.00 0.00 4.26
4103 5871 1.374758 GAGGGACGTCACCAAGCTG 60.375 63.158 15.74 0.00 0.00 4.24
4104 5872 2.932234 CGAGGGACGTCACCAAGCT 61.932 63.158 15.74 0.00 37.22 3.74
4105 5873 2.432628 CGAGGGACGTCACCAAGC 60.433 66.667 15.74 7.24 37.22 4.01
4106 5874 2.432628 GCGAGGGACGTCACCAAG 60.433 66.667 15.74 12.57 44.60 3.61
4107 5875 3.228017 TGCGAGGGACGTCACCAA 61.228 61.111 15.74 0.00 44.60 3.67
4108 5876 3.986006 GTGCGAGGGACGTCACCA 61.986 66.667 15.74 2.08 44.60 4.17
4109 5877 3.628280 GAGTGCGAGGGACGTCACC 62.628 68.421 15.74 14.36 43.91 4.02
4110 5878 2.126424 GAGTGCGAGGGACGTCAC 60.126 66.667 18.91 15.14 43.54 3.67
4111 5879 1.901948 AAGAGTGCGAGGGACGTCA 60.902 57.895 18.91 0.00 44.60 4.35
4112 5880 1.444553 CAAGAGTGCGAGGGACGTC 60.445 63.158 7.13 7.13 44.60 4.34
4113 5881 1.251527 ATCAAGAGTGCGAGGGACGT 61.252 55.000 0.00 0.00 44.60 4.34
4114 5882 0.526524 GATCAAGAGTGCGAGGGACG 60.527 60.000 0.00 0.00 45.66 4.79
4115 5883 0.179097 GGATCAAGAGTGCGAGGGAC 60.179 60.000 0.00 0.00 0.00 4.46
4116 5884 0.614697 TGGATCAAGAGTGCGAGGGA 60.615 55.000 0.00 0.00 0.00 4.20
4117 5885 0.179089 CTGGATCAAGAGTGCGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
4118 5886 0.534412 ACTGGATCAAGAGTGCGAGG 59.466 55.000 3.42 0.00 0.00 4.63
4119 5887 1.998315 CAACTGGATCAAGAGTGCGAG 59.002 52.381 3.42 0.00 0.00 5.03
4120 5888 1.618343 TCAACTGGATCAAGAGTGCGA 59.382 47.619 3.42 0.00 0.00 5.10
4121 5889 1.998315 CTCAACTGGATCAAGAGTGCG 59.002 52.381 3.42 0.00 0.00 5.34
4122 5890 2.354259 CCTCAACTGGATCAAGAGTGC 58.646 52.381 3.42 0.00 0.00 4.40
4123 5891 2.354259 GCCTCAACTGGATCAAGAGTG 58.646 52.381 3.42 1.69 0.00 3.51
4124 5892 1.280421 GGCCTCAACTGGATCAAGAGT 59.720 52.381 3.42 0.00 0.00 3.24
4125 5893 1.741732 CGGCCTCAACTGGATCAAGAG 60.742 57.143 3.42 0.00 0.00 2.85
4126 5894 0.250234 CGGCCTCAACTGGATCAAGA 59.750 55.000 3.42 0.00 0.00 3.02
4127 5895 0.250234 TCGGCCTCAACTGGATCAAG 59.750 55.000 0.00 0.00 0.00 3.02
4128 5896 0.250234 CTCGGCCTCAACTGGATCAA 59.750 55.000 0.00 0.00 0.00 2.57
4129 5897 1.617018 CCTCGGCCTCAACTGGATCA 61.617 60.000 0.00 0.00 0.00 2.92
4130 5898 1.144936 CCTCGGCCTCAACTGGATC 59.855 63.158 0.00 0.00 0.00 3.36
4131 5899 2.370445 CCCTCGGCCTCAACTGGAT 61.370 63.158 0.00 0.00 0.00 3.41
4132 5900 3.003173 CCCTCGGCCTCAACTGGA 61.003 66.667 0.00 0.00 0.00 3.86
4133 5901 3.003173 TCCCTCGGCCTCAACTGG 61.003 66.667 0.00 0.00 0.00 4.00
4134 5902 1.954362 CTCTCCCTCGGCCTCAACTG 61.954 65.000 0.00 0.00 0.00 3.16
4135 5903 1.684049 CTCTCCCTCGGCCTCAACT 60.684 63.158 0.00 0.00 0.00 3.16
4136 5904 1.545706 AACTCTCCCTCGGCCTCAAC 61.546 60.000 0.00 0.00 0.00 3.18
4137 5905 1.229209 AACTCTCCCTCGGCCTCAA 60.229 57.895 0.00 0.00 0.00 3.02
4138 5906 1.682684 GAACTCTCCCTCGGCCTCA 60.683 63.158 0.00 0.00 0.00 3.86
4139 5907 2.428085 GGAACTCTCCCTCGGCCTC 61.428 68.421 0.00 0.00 35.42 4.70
4140 5908 2.364448 GGAACTCTCCCTCGGCCT 60.364 66.667 0.00 0.00 35.42 5.19
4141 5909 3.839432 CGGAACTCTCCCTCGGCC 61.839 72.222 0.00 0.00 38.71 6.13
4142 5910 3.066233 GACGGAACTCTCCCTCGGC 62.066 68.421 0.00 0.00 38.71 5.54
4143 5911 1.658686 CTGACGGAACTCTCCCTCGG 61.659 65.000 0.00 0.00 38.71 4.63
4144 5912 1.803943 CTGACGGAACTCTCCCTCG 59.196 63.158 0.00 0.00 38.71 4.63
4145 5913 1.251527 TGCTGACGGAACTCTCCCTC 61.252 60.000 0.00 0.00 38.71 4.30
4146 5914 1.228894 TGCTGACGGAACTCTCCCT 60.229 57.895 0.00 0.00 38.71 4.20
4147 5915 1.079750 GTGCTGACGGAACTCTCCC 60.080 63.158 0.00 0.00 38.71 4.30
4148 5916 1.444553 CGTGCTGACGGAACTCTCC 60.445 63.158 0.00 0.00 42.18 3.71
4149 5917 0.171455 ATCGTGCTGACGGAACTCTC 59.829 55.000 0.00 0.00 46.11 3.20
4150 5918 0.109086 CATCGTGCTGACGGAACTCT 60.109 55.000 0.00 0.00 46.11 3.24
4151 5919 1.078759 CCATCGTGCTGACGGAACTC 61.079 60.000 0.00 0.00 46.11 3.01
4152 5920 1.079819 CCATCGTGCTGACGGAACT 60.080 57.895 0.00 0.00 46.11 3.01
4153 5921 2.740714 GCCATCGTGCTGACGGAAC 61.741 63.158 0.00 0.00 46.11 3.62
4154 5922 2.434185 GCCATCGTGCTGACGGAA 60.434 61.111 0.00 0.00 46.11 4.30
4155 5923 3.381983 AGCCATCGTGCTGACGGA 61.382 61.111 0.00 0.00 46.11 4.69
4161 5929 2.046892 GTCACCAGCCATCGTGCT 60.047 61.111 0.00 0.00 44.00 4.40
4162 5930 3.490759 CGTCACCAGCCATCGTGC 61.491 66.667 0.00 0.00 0.00 5.34
4163 5931 2.815211 CCGTCACCAGCCATCGTG 60.815 66.667 0.00 0.00 0.00 4.35
4164 5932 3.311110 ACCGTCACCAGCCATCGT 61.311 61.111 0.00 0.00 0.00 3.73
4165 5933 2.578163 ATCACCGTCACCAGCCATCG 62.578 60.000 0.00 0.00 0.00 3.84
4166 5934 1.091771 CATCACCGTCACCAGCCATC 61.092 60.000 0.00 0.00 0.00 3.51
4167 5935 1.078214 CATCACCGTCACCAGCCAT 60.078 57.895 0.00 0.00 0.00 4.40
4168 5936 1.552799 ATCATCACCGTCACCAGCCA 61.553 55.000 0.00 0.00 0.00 4.75
4169 5937 1.091771 CATCATCACCGTCACCAGCC 61.092 60.000 0.00 0.00 0.00 4.85
4170 5938 0.108186 TCATCATCACCGTCACCAGC 60.108 55.000 0.00 0.00 0.00 4.85
4171 5939 2.274437 CTTCATCATCACCGTCACCAG 58.726 52.381 0.00 0.00 0.00 4.00
4172 5940 1.623311 ACTTCATCATCACCGTCACCA 59.377 47.619 0.00 0.00 0.00 4.17
4173 5941 2.386661 ACTTCATCATCACCGTCACC 57.613 50.000 0.00 0.00 0.00 4.02
4174 5942 4.327357 CAGTAACTTCATCATCACCGTCAC 59.673 45.833 0.00 0.00 0.00 3.67
4175 5943 4.219725 TCAGTAACTTCATCATCACCGTCA 59.780 41.667 0.00 0.00 0.00 4.35
4176 5944 4.563184 GTCAGTAACTTCATCATCACCGTC 59.437 45.833 0.00 0.00 0.00 4.79
4177 5945 4.495422 GTCAGTAACTTCATCATCACCGT 58.505 43.478 0.00 0.00 0.00 4.83
4178 5946 3.547868 CGTCAGTAACTTCATCATCACCG 59.452 47.826 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.