Multiple sequence alignment - TraesCS6A01G267200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G267200 chr6A 100.000 4244 0 0 566 4809 492792178 492796421 0.000000e+00 7838.0
1 TraesCS6A01G267200 chr6A 100.000 255 0 0 1 255 492791613 492791867 5.630000e-129 472.0
2 TraesCS6A01G267200 chr6D 93.348 2766 111 33 566 3292 350935780 350933049 0.000000e+00 4021.0
3 TraesCS6A01G267200 chr6D 93.473 1241 43 20 3296 4525 350933011 350931798 0.000000e+00 1808.0
4 TraesCS6A01G267200 chr6D 93.706 143 3 6 115 255 350935966 350935828 4.880000e-50 209.0
5 TraesCS6A01G267200 chr6B 94.210 1779 75 15 566 2323 528906449 528908220 0.000000e+00 2689.0
6 TraesCS6A01G267200 chr6B 96.545 984 29 3 2313 3292 528908629 528909611 0.000000e+00 1624.0
7 TraesCS6A01G267200 chr6B 95.703 861 32 3 3296 4151 528909649 528910509 0.000000e+00 1380.0
8 TraesCS6A01G267200 chr6B 91.192 386 16 6 4146 4527 528911576 528911947 4.290000e-140 508.0
9 TraesCS6A01G267200 chr6B 95.775 284 12 0 4526 4809 24818067 24817784 4.390000e-125 459.0
10 TraesCS6A01G267200 chr6B 88.652 141 14 1 115 255 528906263 528906401 2.300000e-38 171.0
11 TraesCS6A01G267200 chr6B 96.970 33 1 0 571 603 585576213 585576181 6.720000e-04 56.5
12 TraesCS6A01G267200 chr5B 97.895 285 4 2 4527 4809 544611366 544611650 4.320000e-135 492.0
13 TraesCS6A01G267200 chr1A 97.535 284 6 1 4527 4809 35507256 35506973 7.240000e-133 484.0
14 TraesCS6A01G267200 chr1A 96.522 115 4 0 1 115 321279615 321279729 1.770000e-44 191.0
15 TraesCS6A01G267200 chr1A 96.522 115 4 0 1 115 427456786 427456672 1.770000e-44 191.0
16 TraesCS6A01G267200 chr5A 97.203 286 6 1 4526 4809 476752430 476752145 2.600000e-132 483.0
17 TraesCS6A01G267200 chr5A 95.876 291 4 3 4527 4809 582855072 582855362 9.430000e-127 464.0
18 TraesCS6A01G267200 chr5A 95.533 291 6 3 4526 4809 666704986 666704696 4.390000e-125 459.0
19 TraesCS6A01G267200 chr5A 95.082 122 5 1 1 122 261784286 261784406 1.770000e-44 191.0
20 TraesCS6A01G267200 chr5A 100.000 34 0 0 575 608 103426917 103426884 4.020000e-06 63.9
21 TraesCS6A01G267200 chr4A 93.930 313 4 5 4512 4809 36284380 36284068 4.390000e-125 459.0
22 TraesCS6A01G267200 chrUn 95.439 285 9 2 4525 4809 79730651 79730931 7.340000e-123 451.0
23 TraesCS6A01G267200 chr4B 95.172 290 7 3 4527 4809 461629935 461630224 7.340000e-123 451.0
24 TraesCS6A01G267200 chr2B 96.552 116 3 1 1 115 311230061 311229946 1.770000e-44 191.0
25 TraesCS6A01G267200 chr2A 96.522 115 4 0 1 115 320818785 320818671 1.770000e-44 191.0
26 TraesCS6A01G267200 chr2A 96.522 115 4 0 1 115 321138477 321138363 1.770000e-44 191.0
27 TraesCS6A01G267200 chr2A 96.522 115 4 0 1 115 336981912 336982026 1.770000e-44 191.0
28 TraesCS6A01G267200 chr2A 96.522 115 4 0 1 115 365441678 365441792 1.770000e-44 191.0
29 TraesCS6A01G267200 chr2A 96.522 115 4 0 1 115 409302490 409302604 1.770000e-44 191.0
30 TraesCS6A01G267200 chr2A 76.250 240 34 18 2489 2712 694331607 694331839 6.580000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G267200 chr6A 492791613 492796421 4808 False 4155.000000 7838 100.0000 1 4809 2 chr6A.!!$F1 4808
1 TraesCS6A01G267200 chr6D 350931798 350935966 4168 True 2012.666667 4021 93.5090 115 4525 3 chr6D.!!$R1 4410
2 TraesCS6A01G267200 chr6B 528906263 528911947 5684 False 1274.400000 2689 93.2604 115 4527 5 chr6B.!!$F1 4412

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 920 0.038526 CTACCTCCCGTGTCACACAC 60.039 60.000 9.06 2.95 45.26 3.82 F
919 922 0.468585 ACCTCCCGTGTCACACACTA 60.469 55.000 9.06 0.00 46.46 2.74 F
1634 1654 1.078656 AGGGAGGAAGCTCTCAAGAGT 59.921 52.381 8.73 0.00 43.85 3.24 F
1786 1807 1.378514 ATCCACCACGACATTGCCC 60.379 57.895 0.00 0.00 0.00 5.36 F
3214 3699 1.440938 TTGGTTTCGCACAACCCTCG 61.441 55.000 10.78 0.00 45.18 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2631 3113 1.073763 AGCCAATGTGGAGCTACAACA 59.926 47.619 0.00 1.31 40.96 3.33 R
2680 3162 3.777478 TGACTTCCCACGAAATACGATC 58.223 45.455 0.00 0.00 45.77 3.69 R
3624 4145 1.081892 ATGTGACATGCTCGCTCAAC 58.918 50.000 0.00 0.00 0.00 3.18 R
3736 4260 3.008375 AGAGCAAGATCAAGTAAGTGCCA 59.992 43.478 0.00 0.00 32.38 4.92 R
4631 6238 0.114560 TCTCCTTCCACTTCCGGAGT 59.885 55.000 3.34 2.07 42.80 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.863658 GAGCGAGTTCACATTGTGTC 57.136 50.000 16.06 10.69 34.79 3.67
20 21 1.461127 GAGCGAGTTCACATTGTGTCC 59.539 52.381 16.06 8.22 34.79 4.02
21 22 1.202639 AGCGAGTTCACATTGTGTCCA 60.203 47.619 16.06 0.00 34.79 4.02
22 23 1.601903 GCGAGTTCACATTGTGTCCAA 59.398 47.619 16.06 1.26 34.79 3.53
23 24 2.226437 GCGAGTTCACATTGTGTCCAAT 59.774 45.455 16.06 1.93 42.03 3.16
32 33 1.458398 TTGTGTCCAATGGCGTATGG 58.542 50.000 0.00 2.61 38.09 2.74
33 34 0.326595 TGTGTCCAATGGCGTATGGT 59.673 50.000 0.00 0.00 37.94 3.55
34 35 1.014352 GTGTCCAATGGCGTATGGTC 58.986 55.000 0.00 4.04 37.94 4.02
35 36 0.461163 TGTCCAATGGCGTATGGTCG 60.461 55.000 0.00 0.00 37.94 4.79
36 37 0.179094 GTCCAATGGCGTATGGTCGA 60.179 55.000 0.00 0.00 37.94 4.20
37 38 0.104120 TCCAATGGCGTATGGTCGAG 59.896 55.000 0.00 0.00 37.94 4.04
38 39 0.880278 CCAATGGCGTATGGTCGAGG 60.880 60.000 0.00 0.00 31.84 4.63
39 40 0.179084 CAATGGCGTATGGTCGAGGT 60.179 55.000 0.00 0.00 0.00 3.85
40 41 0.104304 AATGGCGTATGGTCGAGGTC 59.896 55.000 0.00 0.00 0.00 3.85
41 42 0.755698 ATGGCGTATGGTCGAGGTCT 60.756 55.000 0.00 0.00 0.00 3.85
42 43 1.359475 GGCGTATGGTCGAGGTCTC 59.641 63.158 0.00 0.00 0.00 3.36
43 44 1.381928 GGCGTATGGTCGAGGTCTCA 61.382 60.000 0.00 0.00 0.00 3.27
44 45 0.669077 GCGTATGGTCGAGGTCTCAT 59.331 55.000 0.00 0.00 0.00 2.90
45 46 1.335142 GCGTATGGTCGAGGTCTCATC 60.335 57.143 0.00 0.00 0.00 2.92
46 47 1.069838 CGTATGGTCGAGGTCTCATCG 60.070 57.143 0.00 0.00 41.50 3.84
47 48 1.948145 GTATGGTCGAGGTCTCATCGT 59.052 52.381 3.96 0.00 40.95 3.73
48 49 2.343484 ATGGTCGAGGTCTCATCGTA 57.657 50.000 3.96 0.00 40.95 3.43
49 50 2.343484 TGGTCGAGGTCTCATCGTAT 57.657 50.000 3.96 0.00 40.95 3.06
50 51 1.947456 TGGTCGAGGTCTCATCGTATG 59.053 52.381 3.96 0.00 40.95 2.39
51 52 1.948145 GGTCGAGGTCTCATCGTATGT 59.052 52.381 3.96 0.00 40.95 2.29
52 53 2.031857 GGTCGAGGTCTCATCGTATGTC 60.032 54.545 3.96 0.00 40.95 3.06
53 54 2.031857 GTCGAGGTCTCATCGTATGTCC 60.032 54.545 3.96 0.00 40.95 4.02
54 55 2.158798 TCGAGGTCTCATCGTATGTCCT 60.159 50.000 3.96 0.00 40.95 3.85
55 56 2.224549 CGAGGTCTCATCGTATGTCCTC 59.775 54.545 16.01 16.01 38.70 3.71
56 57 3.482436 GAGGTCTCATCGTATGTCCTCT 58.518 50.000 17.22 0.00 38.84 3.69
57 58 3.886505 GAGGTCTCATCGTATGTCCTCTT 59.113 47.826 17.22 0.00 38.84 2.85
58 59 3.634448 AGGTCTCATCGTATGTCCTCTTG 59.366 47.826 0.00 0.00 0.00 3.02
59 60 3.243569 GGTCTCATCGTATGTCCTCTTGG 60.244 52.174 0.00 0.00 0.00 3.61
60 61 2.959030 TCTCATCGTATGTCCTCTTGGG 59.041 50.000 0.00 0.00 0.00 4.12
61 62 2.036475 CTCATCGTATGTCCTCTTGGGG 59.964 54.545 0.00 0.00 35.33 4.96
62 63 0.759346 ATCGTATGTCCTCTTGGGGC 59.241 55.000 0.00 0.00 40.85 5.80
63 64 0.325296 TCGTATGTCCTCTTGGGGCT 60.325 55.000 0.00 0.00 41.10 5.19
64 65 0.541863 CGTATGTCCTCTTGGGGCTT 59.458 55.000 0.00 0.00 41.10 4.35
65 66 1.743772 CGTATGTCCTCTTGGGGCTTG 60.744 57.143 0.00 0.00 41.10 4.01
66 67 0.918983 TATGTCCTCTTGGGGCTTGG 59.081 55.000 0.00 0.00 41.10 3.61
67 68 1.867595 ATGTCCTCTTGGGGCTTGGG 61.868 60.000 0.00 0.00 41.10 4.12
68 69 2.941025 TCCTCTTGGGGCTTGGGG 60.941 66.667 0.00 0.00 35.33 4.96
69 70 2.941025 CCTCTTGGGGCTTGGGGA 60.941 66.667 0.00 0.00 0.00 4.81
70 71 2.679716 CTCTTGGGGCTTGGGGAG 59.320 66.667 0.00 0.00 0.00 4.30
71 72 2.121506 TCTTGGGGCTTGGGGAGT 60.122 61.111 0.00 0.00 0.00 3.85
72 73 0.914417 CTCTTGGGGCTTGGGGAGTA 60.914 60.000 0.00 0.00 0.00 2.59
73 74 0.914417 TCTTGGGGCTTGGGGAGTAG 60.914 60.000 0.00 0.00 0.00 2.57
74 75 1.151677 TTGGGGCTTGGGGAGTAGT 60.152 57.895 0.00 0.00 0.00 2.73
75 76 1.205460 TTGGGGCTTGGGGAGTAGTC 61.205 60.000 0.00 0.00 0.00 2.59
76 77 2.732619 GGGGCTTGGGGAGTAGTCG 61.733 68.421 0.00 0.00 0.00 4.18
77 78 1.988406 GGGCTTGGGGAGTAGTCGT 60.988 63.158 0.00 0.00 0.00 4.34
78 79 0.685458 GGGCTTGGGGAGTAGTCGTA 60.685 60.000 0.00 0.00 0.00 3.43
79 80 0.745468 GGCTTGGGGAGTAGTCGTAG 59.255 60.000 0.00 0.00 0.00 3.51
80 81 1.472188 GCTTGGGGAGTAGTCGTAGT 58.528 55.000 0.00 0.00 0.00 2.73
81 82 1.134560 GCTTGGGGAGTAGTCGTAGTG 59.865 57.143 0.00 0.00 0.00 2.74
82 83 2.444421 CTTGGGGAGTAGTCGTAGTGT 58.556 52.381 0.00 0.00 0.00 3.55
83 84 3.614092 CTTGGGGAGTAGTCGTAGTGTA 58.386 50.000 0.00 0.00 0.00 2.90
84 85 2.991250 TGGGGAGTAGTCGTAGTGTAC 58.009 52.381 0.00 0.00 0.00 2.90
85 86 2.305635 TGGGGAGTAGTCGTAGTGTACA 59.694 50.000 0.00 0.00 0.00 2.90
86 87 3.054139 TGGGGAGTAGTCGTAGTGTACAT 60.054 47.826 0.00 0.00 0.00 2.29
87 88 3.314635 GGGGAGTAGTCGTAGTGTACATG 59.685 52.174 0.00 0.00 0.00 3.21
88 89 4.194640 GGGAGTAGTCGTAGTGTACATGA 58.805 47.826 0.00 0.00 0.00 3.07
89 90 4.272991 GGGAGTAGTCGTAGTGTACATGAG 59.727 50.000 0.00 0.00 0.00 2.90
90 91 4.272991 GGAGTAGTCGTAGTGTACATGAGG 59.727 50.000 0.00 0.00 0.00 3.86
91 92 5.095145 AGTAGTCGTAGTGTACATGAGGA 57.905 43.478 0.00 0.00 0.00 3.71
92 93 5.682659 AGTAGTCGTAGTGTACATGAGGAT 58.317 41.667 0.00 0.00 0.00 3.24
93 94 4.902443 AGTCGTAGTGTACATGAGGATG 57.098 45.455 0.00 0.00 35.49 3.51
94 95 4.524053 AGTCGTAGTGTACATGAGGATGA 58.476 43.478 0.00 0.00 33.36 2.92
95 96 5.133941 AGTCGTAGTGTACATGAGGATGAT 58.866 41.667 0.00 0.00 33.36 2.45
96 97 5.239744 AGTCGTAGTGTACATGAGGATGATC 59.760 44.000 0.00 0.00 33.36 2.92
97 98 4.213482 TCGTAGTGTACATGAGGATGATCG 59.787 45.833 0.00 0.00 33.36 3.69
98 99 4.023963 CGTAGTGTACATGAGGATGATCGT 60.024 45.833 0.00 0.00 33.36 3.73
99 100 5.178809 CGTAGTGTACATGAGGATGATCGTA 59.821 44.000 0.00 0.00 33.36 3.43
100 101 5.697473 AGTGTACATGAGGATGATCGTAG 57.303 43.478 0.00 0.00 33.36 3.51
101 102 4.520874 AGTGTACATGAGGATGATCGTAGG 59.479 45.833 0.00 0.00 33.36 3.18
102 103 4.519350 GTGTACATGAGGATGATCGTAGGA 59.481 45.833 0.00 0.00 33.36 2.94
103 104 5.184096 GTGTACATGAGGATGATCGTAGGAT 59.816 44.000 0.00 0.00 34.96 3.24
104 105 4.797800 ACATGAGGATGATCGTAGGATG 57.202 45.455 1.92 0.00 31.51 3.51
105 106 3.056250 ACATGAGGATGATCGTAGGATGC 60.056 47.826 1.92 0.00 31.51 3.91
106 107 2.881734 TGAGGATGATCGTAGGATGCT 58.118 47.619 1.92 0.00 31.51 3.79
107 108 2.822561 TGAGGATGATCGTAGGATGCTC 59.177 50.000 1.92 1.14 35.68 4.26
108 109 2.165437 GAGGATGATCGTAGGATGCTCC 59.835 54.545 1.92 8.40 36.58 4.70
109 110 1.135257 GGATGATCGTAGGATGCTCCG 60.135 57.143 1.92 0.00 42.75 4.63
110 111 0.244994 ATGATCGTAGGATGCTCCGC 59.755 55.000 1.92 0.00 42.75 5.54
111 112 1.106944 TGATCGTAGGATGCTCCGCA 61.107 55.000 1.92 0.00 42.75 5.69
124 125 3.544684 TGCTCCGCATCAGATAACAAAT 58.455 40.909 0.00 0.00 31.71 2.32
201 202 6.418819 CACAAATCTCAACACAAGAACATTCC 59.581 38.462 0.00 0.00 0.00 3.01
206 207 2.185004 ACACAAGAACATTCCCTCCG 57.815 50.000 0.00 0.00 0.00 4.63
627 629 1.010350 GCTTGCGATGAAGATGCGG 60.010 57.895 0.00 0.00 0.00 5.69
630 632 1.304509 TTGCGATGAAGATGCGGCAA 61.305 50.000 6.82 0.00 0.00 4.52
675 677 0.726256 GACTACGTGGACGAGAGGAC 59.274 60.000 5.70 0.00 43.02 3.85
751 753 2.657143 GGAAGACCACCGATAGAGACT 58.343 52.381 0.00 0.00 35.10 3.24
916 919 0.178984 TCTACCTCCCGTGTCACACA 60.179 55.000 9.06 0.00 33.40 3.72
917 920 0.038526 CTACCTCCCGTGTCACACAC 60.039 60.000 9.06 2.95 45.26 3.82
919 922 0.468585 ACCTCCCGTGTCACACACTA 60.469 55.000 9.06 0.00 46.46 2.74
1017 1031 2.900546 GAGGATGTACCGAGATCCCAAT 59.099 50.000 6.38 0.00 44.98 3.16
1333 1350 4.152402 CCTTGACAACATGAACGTAAGAGG 59.848 45.833 0.00 0.00 43.62 3.69
1366 1383 3.655810 CTGCTGCCGAGGGAGTGAC 62.656 68.421 12.20 0.00 35.92 3.67
1424 1441 1.508088 CAGGGTTCGAATGGCAAGC 59.492 57.895 0.00 0.00 0.00 4.01
1505 1522 1.817357 CTGCTGCTGTCTTGGATTCA 58.183 50.000 0.00 0.00 0.00 2.57
1509 1526 3.054875 TGCTGCTGTCTTGGATTCATACT 60.055 43.478 0.00 0.00 0.00 2.12
1547 1564 9.801873 ACATTACTATGATGTTAAATTGTTGCC 57.198 29.630 0.00 0.00 34.18 4.52
1586 1606 8.472683 TGTTCGTTGTTCTCAATTTTGAATTT 57.527 26.923 0.00 0.00 36.64 1.82
1587 1607 8.591312 TGTTCGTTGTTCTCAATTTTGAATTTC 58.409 29.630 0.00 0.00 36.64 2.17
1607 1627 4.715534 TCTTTTGTGGGTGAAGGACATA 57.284 40.909 0.00 0.00 0.00 2.29
1634 1654 1.078656 AGGGAGGAAGCTCTCAAGAGT 59.921 52.381 8.73 0.00 43.85 3.24
1696 1717 6.839124 AAATTATGCCTCATGAAACTGTGA 57.161 33.333 0.00 0.00 0.00 3.58
1755 1776 2.281484 GACAAGAACTGGCCGCCA 60.281 61.111 12.67 12.67 0.00 5.69
1786 1807 1.378514 ATCCACCACGACATTGCCC 60.379 57.895 0.00 0.00 0.00 5.36
1886 1907 6.313519 TGAGATACCAGTTTTAAGAGGCAT 57.686 37.500 0.00 0.00 0.00 4.40
2295 2352 1.891150 CAATGCTTTCTGGCTTCCTGT 59.109 47.619 0.00 0.00 0.00 4.00
2340 2822 6.832384 AGTTCATGCCATACTTCTGATTCAAT 59.168 34.615 0.00 0.00 0.00 2.57
2342 2824 7.268199 TCATGCCATACTTCTGATTCAATTC 57.732 36.000 0.00 0.00 0.00 2.17
2364 2846 6.173427 TCTGTATCAGCCTAACATGCATAA 57.827 37.500 0.00 0.00 0.00 1.90
2426 2908 9.346725 GATGTTTGACTTAACTGAATTCCAATC 57.653 33.333 2.27 0.00 0.00 2.67
2433 2915 6.716628 ACTTAACTGAATTCCAATCTCTGCAA 59.283 34.615 2.27 0.00 0.00 4.08
2740 3222 7.338710 ACTTACCACACTATGTATTGCTTCAT 58.661 34.615 0.00 0.00 0.00 2.57
2741 3223 8.482943 ACTTACCACACTATGTATTGCTTCATA 58.517 33.333 0.00 0.00 0.00 2.15
2757 3239 6.283694 TGCTTCATACAATTACTGCCTAGAG 58.716 40.000 0.00 0.00 0.00 2.43
2940 3425 2.569059 TGCTATTCATCCTTCTGCAGC 58.431 47.619 9.47 0.00 0.00 5.25
2976 3461 2.655090 TGGAATGAACAGCTGGACAA 57.345 45.000 19.93 0.46 0.00 3.18
3190 3675 3.777478 TCTGCCTTTATTACGTTCCTCG 58.223 45.455 0.00 0.00 46.00 4.63
3208 3693 1.738350 TCGTTCTTTGGTTTCGCACAA 59.262 42.857 0.00 0.00 0.00 3.33
3214 3699 1.440938 TTGGTTTCGCACAACCCTCG 61.441 55.000 10.78 0.00 45.18 4.63
3292 3777 8.684386 TTACTTGGATCACACAGTTTGAATTA 57.316 30.769 0.00 0.00 0.00 1.40
3293 3778 7.206981 ACTTGGATCACACAGTTTGAATTAG 57.793 36.000 0.00 0.00 0.00 1.73
3294 3779 6.772716 ACTTGGATCACACAGTTTGAATTAGT 59.227 34.615 0.00 0.00 0.00 2.24
3487 4007 8.228464 GTGTTTACTGCTGGAAGAAAGTTATAC 58.772 37.037 0.00 0.00 34.69 1.47
3500 4021 9.871238 GAAGAAAGTTATACTAACCATCAGTCA 57.129 33.333 0.00 0.00 0.00 3.41
3546 4067 9.329913 CTTACCTTTGTTTTTCTATGTTCATCG 57.670 33.333 0.00 0.00 0.00 3.84
3624 4145 4.524328 ACAAGTAAAGCAAATCCAGGAAGG 59.476 41.667 0.00 0.00 39.47 3.46
3647 4168 3.333804 TGAGCGAGCATGTCACATTTTA 58.666 40.909 0.00 0.00 0.00 1.52
3649 4170 4.201841 TGAGCGAGCATGTCACATTTTATG 60.202 41.667 0.00 0.00 0.00 1.90
3695 4219 8.037758 GCTGTCACCTATGCATATAGAACTATT 58.962 37.037 6.92 0.00 38.88 1.73
3736 4260 0.109132 GCGCAAAATACCAGCAGCTT 60.109 50.000 0.30 0.00 0.00 3.74
3737 4261 1.621107 CGCAAAATACCAGCAGCTTG 58.379 50.000 0.00 0.00 0.00 4.01
3961 4485 9.986833 AAATTCAGAAGTTTGTTTATTTGTTGC 57.013 25.926 0.00 0.00 0.00 4.17
3983 4507 6.578944 TGCAAGAGAGTAGAAGTGTAACAAA 58.421 36.000 0.00 0.00 41.43 2.83
4005 4529 9.485206 ACAAACGTTGTATTAGTGTTATCTCTT 57.515 29.630 0.00 0.00 43.27 2.85
4025 4549 8.330466 TCTCTTGAACTGTCTGTTGTTTAAAA 57.670 30.769 0.00 0.00 39.30 1.52
4080 4605 6.112058 TGTTTGAAGCCTAGCATTTTTGTTT 58.888 32.000 0.00 0.00 0.00 2.83
4116 4641 4.511454 GCATATTTGATTCGTCTGCTGGTA 59.489 41.667 0.00 0.00 0.00 3.25
4147 5751 3.466791 CTGCGAGGGCCATGGTAGG 62.467 68.421 14.67 0.00 38.85 3.18
4208 5812 1.195448 GTGCCTTGTGAAGTGATGTCG 59.805 52.381 0.00 0.00 0.00 4.35
4314 5920 3.388308 CATGATGTCCTTCTAGCCTTCG 58.612 50.000 0.00 0.00 0.00 3.79
4332 5938 3.728076 TCGCTGAATCCTACCATGTAC 57.272 47.619 0.00 0.00 0.00 2.90
4398 6004 4.298332 CTTGCGCCATAACAAGAAGTTTT 58.702 39.130 4.18 0.00 44.89 2.43
4454 6060 7.148086 GCATGTGGTTGGACTTCATAGATTTTA 60.148 37.037 0.00 0.00 0.00 1.52
4530 6137 2.911484 GTCCTAAGGAATGGACTGCTG 58.089 52.381 5.05 0.00 46.65 4.41
4531 6138 2.501723 GTCCTAAGGAATGGACTGCTGA 59.498 50.000 5.05 0.00 46.65 4.26
4532 6139 3.055094 GTCCTAAGGAATGGACTGCTGAA 60.055 47.826 5.05 0.00 46.65 3.02
4533 6140 3.587061 TCCTAAGGAATGGACTGCTGAAA 59.413 43.478 0.00 0.00 0.00 2.69
4534 6141 4.228210 TCCTAAGGAATGGACTGCTGAAAT 59.772 41.667 0.00 0.00 0.00 2.17
4535 6142 4.578105 CCTAAGGAATGGACTGCTGAAATC 59.422 45.833 0.00 0.00 0.00 2.17
4536 6143 4.313020 AAGGAATGGACTGCTGAAATCT 57.687 40.909 0.00 0.00 0.00 2.40
4537 6144 3.618351 AGGAATGGACTGCTGAAATCTG 58.382 45.455 0.00 0.00 0.00 2.90
4538 6145 3.265221 AGGAATGGACTGCTGAAATCTGA 59.735 43.478 0.00 0.00 0.00 3.27
4539 6146 3.626670 GGAATGGACTGCTGAAATCTGAG 59.373 47.826 0.00 0.00 0.00 3.35
4540 6147 4.511527 GAATGGACTGCTGAAATCTGAGA 58.488 43.478 0.00 0.00 0.00 3.27
4541 6148 4.774660 ATGGACTGCTGAAATCTGAGAT 57.225 40.909 0.00 0.00 0.00 2.75
4542 6149 3.870274 TGGACTGCTGAAATCTGAGATG 58.130 45.455 0.00 0.00 0.00 2.90
4543 6150 3.204526 GGACTGCTGAAATCTGAGATGG 58.795 50.000 0.00 0.00 0.00 3.51
4544 6151 3.204526 GACTGCTGAAATCTGAGATGGG 58.795 50.000 0.00 0.00 0.00 4.00
4545 6152 1.948145 CTGCTGAAATCTGAGATGGGC 59.052 52.381 0.00 0.00 0.00 5.36
4546 6153 1.562942 TGCTGAAATCTGAGATGGGCT 59.437 47.619 0.00 0.00 0.00 5.19
4547 6154 2.220313 GCTGAAATCTGAGATGGGCTC 58.780 52.381 0.00 0.00 44.21 4.70
4548 6155 2.158784 GCTGAAATCTGAGATGGGCTCT 60.159 50.000 0.00 0.00 44.27 4.09
4549 6156 3.070734 GCTGAAATCTGAGATGGGCTCTA 59.929 47.826 0.00 0.00 44.27 2.43
4550 6157 4.800249 GCTGAAATCTGAGATGGGCTCTAG 60.800 50.000 0.00 0.00 44.27 2.43
4551 6158 3.645212 TGAAATCTGAGATGGGCTCTAGG 59.355 47.826 0.00 0.00 44.27 3.02
4552 6159 1.643310 ATCTGAGATGGGCTCTAGGC 58.357 55.000 0.00 0.00 44.27 3.93
4563 6170 2.276732 GCTCTAGGCCCATATTGCAA 57.723 50.000 0.00 0.00 34.27 4.08
4564 6171 2.800250 GCTCTAGGCCCATATTGCAAT 58.200 47.619 17.56 17.56 34.27 3.56
4565 6172 3.160269 GCTCTAGGCCCATATTGCAATT 58.840 45.455 18.75 2.72 34.27 2.32
4566 6173 3.575687 GCTCTAGGCCCATATTGCAATTT 59.424 43.478 18.75 6.94 34.27 1.82
4567 6174 4.321527 GCTCTAGGCCCATATTGCAATTTC 60.322 45.833 18.75 2.72 34.27 2.17
4568 6175 5.065613 TCTAGGCCCATATTGCAATTTCT 57.934 39.130 18.75 5.72 0.00 2.52
4569 6176 4.828939 TCTAGGCCCATATTGCAATTTCTG 59.171 41.667 18.75 12.47 0.00 3.02
4570 6177 3.645434 AGGCCCATATTGCAATTTCTGA 58.355 40.909 18.75 0.00 0.00 3.27
4571 6178 4.032310 AGGCCCATATTGCAATTTCTGAA 58.968 39.130 18.75 0.00 0.00 3.02
4572 6179 4.470664 AGGCCCATATTGCAATTTCTGAAA 59.529 37.500 18.75 5.15 0.00 2.69
4573 6180 5.045724 AGGCCCATATTGCAATTTCTGAAAA 60.046 36.000 18.75 0.00 0.00 2.29
4574 6181 5.647225 GGCCCATATTGCAATTTCTGAAAAA 59.353 36.000 18.75 0.00 0.00 1.94
4575 6182 6.319405 GGCCCATATTGCAATTTCTGAAAAAT 59.681 34.615 18.75 5.16 0.00 1.82
4576 6183 7.412063 GCCCATATTGCAATTTCTGAAAAATC 58.588 34.615 18.75 0.16 0.00 2.17
4577 6184 7.281549 GCCCATATTGCAATTTCTGAAAAATCT 59.718 33.333 18.75 0.00 0.00 2.40
4578 6185 8.823818 CCCATATTGCAATTTCTGAAAAATCTC 58.176 33.333 18.75 0.00 0.00 2.75
4579 6186 9.595823 CCATATTGCAATTTCTGAAAAATCTCT 57.404 29.630 18.75 0.00 0.00 3.10
4583 6190 9.649167 ATTGCAATTTCTGAAAAATCTCTAAGG 57.351 29.630 5.99 0.00 0.00 2.69
4584 6191 7.605449 TGCAATTTCTGAAAAATCTCTAAGGG 58.395 34.615 6.95 0.00 0.00 3.95
4585 6192 6.533012 GCAATTTCTGAAAAATCTCTAAGGGC 59.467 38.462 6.95 0.00 0.00 5.19
4586 6193 6.782082 ATTTCTGAAAAATCTCTAAGGGCC 57.218 37.500 6.95 0.00 0.00 5.80
4587 6194 4.236527 TCTGAAAAATCTCTAAGGGCCC 57.763 45.455 16.46 16.46 0.00 5.80
4588 6195 3.591527 TCTGAAAAATCTCTAAGGGCCCA 59.408 43.478 27.56 2.12 0.00 5.36
4589 6196 4.230502 TCTGAAAAATCTCTAAGGGCCCAT 59.769 41.667 27.56 16.50 0.00 4.00
4590 6197 4.280819 TGAAAAATCTCTAAGGGCCCATG 58.719 43.478 27.56 13.67 0.00 3.66
4591 6198 4.264352 TGAAAAATCTCTAAGGGCCCATGT 60.264 41.667 27.56 11.59 0.00 3.21
4592 6199 3.303351 AAATCTCTAAGGGCCCATGTG 57.697 47.619 27.56 13.94 0.00 3.21
4593 6200 1.143813 ATCTCTAAGGGCCCATGTGG 58.856 55.000 27.56 11.04 37.09 4.17
4606 6213 3.228188 CCATGTGGGTTATATGGCACT 57.772 47.619 0.00 0.00 40.57 4.40
4607 6214 4.365514 CCATGTGGGTTATATGGCACTA 57.634 45.455 0.00 0.00 40.57 2.74
4608 6215 4.326826 CCATGTGGGTTATATGGCACTAG 58.673 47.826 0.00 0.00 40.57 2.57
4609 6216 4.326826 CATGTGGGTTATATGGCACTAGG 58.673 47.826 0.00 0.00 0.00 3.02
4610 6217 3.389866 TGTGGGTTATATGGCACTAGGT 58.610 45.455 0.00 0.00 0.00 3.08
4611 6218 3.135712 TGTGGGTTATATGGCACTAGGTG 59.864 47.826 0.00 0.00 36.51 4.00
4612 6219 3.135895 GTGGGTTATATGGCACTAGGTGT 59.864 47.826 0.00 0.00 35.75 4.16
4614 6221 3.496160 GGGTTATATGGCACTAGGTGTGG 60.496 52.174 0.00 0.00 46.27 4.17
4615 6222 3.135895 GGTTATATGGCACTAGGTGTGGT 59.864 47.826 0.00 0.00 46.27 4.16
4616 6223 4.127171 GTTATATGGCACTAGGTGTGGTG 58.873 47.826 0.00 0.00 46.27 4.17
4617 6224 0.908910 TATGGCACTAGGTGTGGTGG 59.091 55.000 0.00 0.00 46.27 4.61
4618 6225 1.852157 ATGGCACTAGGTGTGGTGGG 61.852 60.000 0.00 0.00 46.27 4.61
4619 6226 2.221299 GGCACTAGGTGTGGTGGGA 61.221 63.158 0.00 0.00 46.27 4.37
4620 6227 1.758592 GCACTAGGTGTGGTGGGAA 59.241 57.895 0.00 0.00 46.27 3.97
4621 6228 0.321653 GCACTAGGTGTGGTGGGAAG 60.322 60.000 0.00 0.00 46.27 3.46
4622 6229 1.056660 CACTAGGTGTGGTGGGAAGT 58.943 55.000 0.00 0.00 42.68 3.01
4623 6230 1.420138 CACTAGGTGTGGTGGGAAGTT 59.580 52.381 0.00 0.00 42.68 2.66
4624 6231 2.132686 ACTAGGTGTGGTGGGAAGTTT 58.867 47.619 0.00 0.00 0.00 2.66
4625 6232 3.071892 CACTAGGTGTGGTGGGAAGTTTA 59.928 47.826 0.00 0.00 42.68 2.01
4626 6233 2.951229 AGGTGTGGTGGGAAGTTTAG 57.049 50.000 0.00 0.00 0.00 1.85
4627 6234 2.132686 AGGTGTGGTGGGAAGTTTAGT 58.867 47.619 0.00 0.00 0.00 2.24
4628 6235 2.105993 AGGTGTGGTGGGAAGTTTAGTC 59.894 50.000 0.00 0.00 0.00 2.59
4629 6236 2.501261 GTGTGGTGGGAAGTTTAGTCC 58.499 52.381 0.00 0.00 0.00 3.85
4636 6243 2.381725 GGAAGTTTAGTCCCACTCCG 57.618 55.000 0.00 0.00 0.00 4.63
4637 6244 1.066358 GGAAGTTTAGTCCCACTCCGG 60.066 57.143 0.00 0.00 0.00 5.14
4638 6245 1.897802 GAAGTTTAGTCCCACTCCGGA 59.102 52.381 2.93 2.93 36.56 5.14
4639 6246 2.019807 AGTTTAGTCCCACTCCGGAA 57.980 50.000 5.23 0.00 36.56 4.30
4640 6247 1.900486 AGTTTAGTCCCACTCCGGAAG 59.100 52.381 5.23 0.20 36.56 3.46
4641 6248 1.622312 GTTTAGTCCCACTCCGGAAGT 59.378 52.381 5.23 2.83 39.44 3.01
4648 6255 4.968553 ACTCCGGAAGTGGAAGGA 57.031 55.556 5.23 0.00 37.64 3.36
4651 6258 2.977578 TCCGGAAGTGGAAGGAGAG 58.022 57.895 0.00 0.00 34.30 3.20
4652 6259 0.114560 TCCGGAAGTGGAAGGAGAGT 59.885 55.000 0.00 0.00 34.30 3.24
4653 6260 0.977395 CCGGAAGTGGAAGGAGAGTT 59.023 55.000 0.00 0.00 0.00 3.01
4654 6261 1.338200 CCGGAAGTGGAAGGAGAGTTG 60.338 57.143 0.00 0.00 0.00 3.16
4655 6262 1.338200 CGGAAGTGGAAGGAGAGTTGG 60.338 57.143 0.00 0.00 0.00 3.77
4656 6263 1.978580 GGAAGTGGAAGGAGAGTTGGA 59.021 52.381 0.00 0.00 0.00 3.53
4657 6264 2.027653 GGAAGTGGAAGGAGAGTTGGAG 60.028 54.545 0.00 0.00 0.00 3.86
4658 6265 2.407340 AGTGGAAGGAGAGTTGGAGT 57.593 50.000 0.00 0.00 0.00 3.85
4659 6266 1.974236 AGTGGAAGGAGAGTTGGAGTG 59.026 52.381 0.00 0.00 0.00 3.51
4660 6267 1.002544 GTGGAAGGAGAGTTGGAGTGG 59.997 57.143 0.00 0.00 0.00 4.00
4661 6268 1.353091 GGAAGGAGAGTTGGAGTGGT 58.647 55.000 0.00 0.00 0.00 4.16
4662 6269 1.700186 GGAAGGAGAGTTGGAGTGGTT 59.300 52.381 0.00 0.00 0.00 3.67
4663 6270 2.106684 GGAAGGAGAGTTGGAGTGGTTT 59.893 50.000 0.00 0.00 0.00 3.27
4664 6271 3.326880 GGAAGGAGAGTTGGAGTGGTTTA 59.673 47.826 0.00 0.00 0.00 2.01
4665 6272 4.019231 GGAAGGAGAGTTGGAGTGGTTTAT 60.019 45.833 0.00 0.00 0.00 1.40
4666 6273 5.189145 GGAAGGAGAGTTGGAGTGGTTTATA 59.811 44.000 0.00 0.00 0.00 0.98
4667 6274 6.296259 GGAAGGAGAGTTGGAGTGGTTTATAA 60.296 42.308 0.00 0.00 0.00 0.98
4668 6275 6.301169 AGGAGAGTTGGAGTGGTTTATAAG 57.699 41.667 0.00 0.00 0.00 1.73
4669 6276 5.189934 AGGAGAGTTGGAGTGGTTTATAAGG 59.810 44.000 0.00 0.00 0.00 2.69
4670 6277 5.429130 GAGAGTTGGAGTGGTTTATAAGGG 58.571 45.833 0.00 0.00 0.00 3.95
4671 6278 4.850386 AGAGTTGGAGTGGTTTATAAGGGT 59.150 41.667 0.00 0.00 0.00 4.34
4672 6279 5.312443 AGAGTTGGAGTGGTTTATAAGGGTT 59.688 40.000 0.00 0.00 0.00 4.11
4673 6280 5.960704 AGTTGGAGTGGTTTATAAGGGTTT 58.039 37.500 0.00 0.00 0.00 3.27
4674 6281 6.008331 AGTTGGAGTGGTTTATAAGGGTTTC 58.992 40.000 0.00 0.00 0.00 2.78
4675 6282 5.853572 TGGAGTGGTTTATAAGGGTTTCT 57.146 39.130 0.00 0.00 0.00 2.52
4676 6283 5.812286 TGGAGTGGTTTATAAGGGTTTCTC 58.188 41.667 0.00 0.00 0.00 2.87
4677 6284 5.550403 TGGAGTGGTTTATAAGGGTTTCTCT 59.450 40.000 0.00 0.00 0.00 3.10
4678 6285 6.045106 TGGAGTGGTTTATAAGGGTTTCTCTT 59.955 38.462 0.00 0.00 0.00 2.85
4679 6286 6.598457 GGAGTGGTTTATAAGGGTTTCTCTTC 59.402 42.308 0.00 0.00 0.00 2.87
4680 6287 7.331089 AGTGGTTTATAAGGGTTTCTCTTCT 57.669 36.000 0.00 0.00 0.00 2.85
4681 6288 8.445361 AGTGGTTTATAAGGGTTTCTCTTCTA 57.555 34.615 0.00 0.00 0.00 2.10
4682 6289 8.319881 AGTGGTTTATAAGGGTTTCTCTTCTAC 58.680 37.037 0.00 0.00 0.00 2.59
4683 6290 8.098912 GTGGTTTATAAGGGTTTCTCTTCTACA 58.901 37.037 0.00 0.00 0.00 2.74
4684 6291 8.832735 TGGTTTATAAGGGTTTCTCTTCTACAT 58.167 33.333 0.00 0.00 0.00 2.29
4685 6292 9.110502 GGTTTATAAGGGTTTCTCTTCTACATG 57.889 37.037 0.00 0.00 0.00 3.21
4686 6293 8.613482 GTTTATAAGGGTTTCTCTTCTACATGC 58.387 37.037 0.00 0.00 0.00 4.06
4687 6294 4.917906 AAGGGTTTCTCTTCTACATGCT 57.082 40.909 0.00 0.00 0.00 3.79
4688 6295 7.676683 ATAAGGGTTTCTCTTCTACATGCTA 57.323 36.000 0.00 0.00 0.00 3.49
4689 6296 6.567602 AAGGGTTTCTCTTCTACATGCTAT 57.432 37.500 0.00 0.00 0.00 2.97
4690 6297 6.567602 AGGGTTTCTCTTCTACATGCTATT 57.432 37.500 0.00 0.00 0.00 1.73
4691 6298 6.352516 AGGGTTTCTCTTCTACATGCTATTG 58.647 40.000 0.00 0.00 0.00 1.90
4692 6299 5.529060 GGGTTTCTCTTCTACATGCTATTGG 59.471 44.000 0.00 0.00 0.00 3.16
4693 6300 6.349300 GGTTTCTCTTCTACATGCTATTGGA 58.651 40.000 0.00 0.00 0.00 3.53
4694 6301 6.481644 GGTTTCTCTTCTACATGCTATTGGAG 59.518 42.308 0.00 0.00 0.00 3.86
4709 6316 6.219417 CTATTGGAGCTTGAGAAGAGAAGA 57.781 41.667 0.00 0.00 0.00 2.87
4710 6317 4.533919 TTGGAGCTTGAGAAGAGAAGAG 57.466 45.455 0.00 0.00 0.00 2.85
4711 6318 2.830923 TGGAGCTTGAGAAGAGAAGAGG 59.169 50.000 0.00 0.00 0.00 3.69
4712 6319 2.418609 GGAGCTTGAGAAGAGAAGAGGC 60.419 54.545 0.00 0.00 0.00 4.70
4713 6320 1.554617 AGCTTGAGAAGAGAAGAGGCC 59.445 52.381 0.00 0.00 0.00 5.19
4714 6321 1.406751 GCTTGAGAAGAGAAGAGGCCC 60.407 57.143 0.00 0.00 0.00 5.80
4715 6322 2.187100 CTTGAGAAGAGAAGAGGCCCT 58.813 52.381 0.00 0.00 0.00 5.19
4716 6323 1.859302 TGAGAAGAGAAGAGGCCCTC 58.141 55.000 1.26 1.26 0.00 4.30
4717 6324 0.744281 GAGAAGAGAAGAGGCCCTCG 59.256 60.000 4.80 0.00 35.36 4.63
4718 6325 1.142965 GAAGAGAAGAGGCCCTCGC 59.857 63.158 4.80 1.57 35.36 5.03
4719 6326 2.621371 GAAGAGAAGAGGCCCTCGCG 62.621 65.000 4.80 0.00 35.36 5.87
4720 6327 4.882396 GAGAAGAGGCCCTCGCGC 62.882 72.222 4.80 0.00 35.36 6.86
4730 6337 4.200283 CCTCGCGCACTCCTCCTC 62.200 72.222 8.75 0.00 0.00 3.71
4731 6338 4.200283 CTCGCGCACTCCTCCTCC 62.200 72.222 8.75 0.00 0.00 4.30
4766 6373 4.467084 GCCGTGGGATTGAGCCGA 62.467 66.667 0.00 0.00 0.00 5.54
4767 6374 2.202932 CCGTGGGATTGAGCCGAG 60.203 66.667 0.00 0.00 0.00 4.63
4768 6375 2.892425 CGTGGGATTGAGCCGAGC 60.892 66.667 0.00 0.00 0.00 5.03
4769 6376 2.514824 GTGGGATTGAGCCGAGCC 60.515 66.667 0.00 0.00 0.00 4.70
4770 6377 4.161295 TGGGATTGAGCCGAGCCG 62.161 66.667 0.00 0.00 0.00 5.52
4771 6378 3.849951 GGGATTGAGCCGAGCCGA 61.850 66.667 0.00 0.00 0.00 5.54
4772 6379 2.279784 GGATTGAGCCGAGCCGAG 60.280 66.667 0.00 0.00 0.00 4.63
4773 6380 2.964389 GATTGAGCCGAGCCGAGC 60.964 66.667 0.00 0.00 0.00 5.03
4774 6381 3.438017 GATTGAGCCGAGCCGAGCT 62.438 63.158 9.16 9.16 43.88 4.09
4783 6390 3.289525 AGCCGAGCTCACACCTAC 58.710 61.111 15.40 0.00 30.62 3.18
4784 6391 2.202623 GCCGAGCTCACACCTACG 60.203 66.667 15.40 0.00 0.00 3.51
4785 6392 2.202623 CCGAGCTCACACCTACGC 60.203 66.667 15.40 0.00 0.00 4.42
4786 6393 2.577112 CGAGCTCACACCTACGCG 60.577 66.667 15.40 3.53 0.00 6.01
4787 6394 2.881352 GAGCTCACACCTACGCGC 60.881 66.667 9.40 0.00 0.00 6.86
4788 6395 3.343788 GAGCTCACACCTACGCGCT 62.344 63.158 9.40 0.00 0.00 5.92
4789 6396 2.432628 GCTCACACCTACGCGCTT 60.433 61.111 5.73 0.00 0.00 4.68
4790 6397 1.153901 GCTCACACCTACGCGCTTA 60.154 57.895 5.73 0.00 0.00 3.09
4791 6398 0.527817 GCTCACACCTACGCGCTTAT 60.528 55.000 5.73 0.00 0.00 1.73
4792 6399 1.922570 CTCACACCTACGCGCTTATT 58.077 50.000 5.73 0.00 0.00 1.40
4793 6400 2.268298 CTCACACCTACGCGCTTATTT 58.732 47.619 5.73 0.00 0.00 1.40
4794 6401 2.671396 CTCACACCTACGCGCTTATTTT 59.329 45.455 5.73 0.00 0.00 1.82
4795 6402 3.068560 TCACACCTACGCGCTTATTTTT 58.931 40.909 5.73 0.00 0.00 1.94
4796 6403 3.120477 TCACACCTACGCGCTTATTTTTG 60.120 43.478 5.73 0.00 0.00 2.44
4797 6404 2.173964 CACCTACGCGCTTATTTTTGC 58.826 47.619 5.73 0.00 0.00 3.68
4798 6405 1.131693 ACCTACGCGCTTATTTTTGCC 59.868 47.619 5.73 0.00 0.00 4.52
4799 6406 1.131504 CCTACGCGCTTATTTTTGCCA 59.868 47.619 5.73 0.00 0.00 4.92
4800 6407 2.440501 CTACGCGCTTATTTTTGCCAG 58.559 47.619 5.73 0.00 0.00 4.85
4801 6408 0.596082 ACGCGCTTATTTTTGCCAGT 59.404 45.000 5.73 0.00 0.00 4.00
4802 6409 1.259316 CGCGCTTATTTTTGCCAGTC 58.741 50.000 5.56 0.00 0.00 3.51
4803 6410 1.400888 CGCGCTTATTTTTGCCAGTCA 60.401 47.619 5.56 0.00 0.00 3.41
4804 6411 1.985684 GCGCTTATTTTTGCCAGTCAC 59.014 47.619 0.00 0.00 0.00 3.67
4805 6412 2.351738 GCGCTTATTTTTGCCAGTCACT 60.352 45.455 0.00 0.00 0.00 3.41
4806 6413 3.119990 GCGCTTATTTTTGCCAGTCACTA 60.120 43.478 0.00 0.00 0.00 2.74
4807 6414 4.614993 GCGCTTATTTTTGCCAGTCACTAA 60.615 41.667 0.00 0.00 0.00 2.24
4808 6415 4.851558 CGCTTATTTTTGCCAGTCACTAAC 59.148 41.667 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.461127 GGACACAATGTGAACTCGCTC 59.539 52.381 21.34 4.89 36.96 5.03
1 2 1.202639 TGGACACAATGTGAACTCGCT 60.203 47.619 21.34 0.00 36.96 4.93
2 3 1.225855 TGGACACAATGTGAACTCGC 58.774 50.000 21.34 2.80 36.96 5.03
13 14 1.271652 ACCATACGCCATTGGACACAA 60.272 47.619 6.95 0.00 41.59 3.33
14 15 0.326595 ACCATACGCCATTGGACACA 59.673 50.000 6.95 0.00 36.79 3.72
15 16 1.014352 GACCATACGCCATTGGACAC 58.986 55.000 6.95 0.00 36.79 3.67
16 17 0.461163 CGACCATACGCCATTGGACA 60.461 55.000 6.95 0.00 36.79 4.02
17 18 0.179094 TCGACCATACGCCATTGGAC 60.179 55.000 6.95 0.00 36.79 4.02
18 19 0.104120 CTCGACCATACGCCATTGGA 59.896 55.000 6.95 0.00 36.79 3.53
19 20 0.880278 CCTCGACCATACGCCATTGG 60.880 60.000 0.00 0.00 39.02 3.16
20 21 0.179084 ACCTCGACCATACGCCATTG 60.179 55.000 0.00 0.00 0.00 2.82
21 22 0.104304 GACCTCGACCATACGCCATT 59.896 55.000 0.00 0.00 0.00 3.16
22 23 0.755698 AGACCTCGACCATACGCCAT 60.756 55.000 0.00 0.00 0.00 4.40
23 24 1.379443 AGACCTCGACCATACGCCA 60.379 57.895 0.00 0.00 0.00 5.69
24 25 1.359475 GAGACCTCGACCATACGCC 59.641 63.158 0.00 0.00 0.00 5.68
25 26 0.669077 ATGAGACCTCGACCATACGC 59.331 55.000 0.00 0.00 0.00 4.42
26 27 1.069838 CGATGAGACCTCGACCATACG 60.070 57.143 0.00 0.00 38.38 3.06
27 28 1.948145 ACGATGAGACCTCGACCATAC 59.052 52.381 0.00 0.00 39.38 2.39
28 29 2.343484 ACGATGAGACCTCGACCATA 57.657 50.000 0.00 0.00 39.38 2.74
29 30 2.343484 TACGATGAGACCTCGACCAT 57.657 50.000 0.00 0.00 39.38 3.55
30 31 1.947456 CATACGATGAGACCTCGACCA 59.053 52.381 0.00 0.00 39.38 4.02
31 32 1.948145 ACATACGATGAGACCTCGACC 59.052 52.381 0.00 0.00 39.38 4.79
32 33 2.031857 GGACATACGATGAGACCTCGAC 60.032 54.545 0.00 0.00 39.38 4.20
33 34 2.158798 AGGACATACGATGAGACCTCGA 60.159 50.000 0.00 0.00 39.38 4.04
34 35 2.222886 AGGACATACGATGAGACCTCG 58.777 52.381 0.00 0.00 41.77 4.63
35 36 3.482436 AGAGGACATACGATGAGACCTC 58.518 50.000 18.81 18.81 42.46 3.85
36 37 3.586470 AGAGGACATACGATGAGACCT 57.414 47.619 0.00 0.00 35.79 3.85
37 38 3.243569 CCAAGAGGACATACGATGAGACC 60.244 52.174 0.00 0.00 36.89 3.85
38 39 3.243569 CCCAAGAGGACATACGATGAGAC 60.244 52.174 0.00 0.00 38.24 3.36
39 40 2.959030 CCCAAGAGGACATACGATGAGA 59.041 50.000 0.00 0.00 38.24 3.27
40 41 2.036475 CCCCAAGAGGACATACGATGAG 59.964 54.545 0.00 0.00 38.24 2.90
41 42 2.039418 CCCCAAGAGGACATACGATGA 58.961 52.381 0.00 0.00 38.24 2.92
42 43 1.541233 GCCCCAAGAGGACATACGATG 60.541 57.143 0.00 0.00 38.24 3.84
43 44 0.759346 GCCCCAAGAGGACATACGAT 59.241 55.000 0.00 0.00 38.24 3.73
44 45 0.325296 AGCCCCAAGAGGACATACGA 60.325 55.000 0.00 0.00 38.24 3.43
45 46 0.541863 AAGCCCCAAGAGGACATACG 59.458 55.000 0.00 0.00 38.24 3.06
46 47 1.408822 CCAAGCCCCAAGAGGACATAC 60.409 57.143 0.00 0.00 38.24 2.39
47 48 0.918983 CCAAGCCCCAAGAGGACATA 59.081 55.000 0.00 0.00 38.24 2.29
48 49 1.693640 CCAAGCCCCAAGAGGACAT 59.306 57.895 0.00 0.00 38.24 3.06
49 50 2.538141 CCCAAGCCCCAAGAGGACA 61.538 63.158 0.00 0.00 38.24 4.02
50 51 2.356667 CCCAAGCCCCAAGAGGAC 59.643 66.667 0.00 0.00 38.24 3.85
51 52 2.941025 CCCCAAGCCCCAAGAGGA 60.941 66.667 0.00 0.00 38.24 3.71
52 53 2.941025 TCCCCAAGCCCCAAGAGG 60.941 66.667 0.00 0.00 0.00 3.69
53 54 0.914417 TACTCCCCAAGCCCCAAGAG 60.914 60.000 0.00 0.00 0.00 2.85
54 55 0.914417 CTACTCCCCAAGCCCCAAGA 60.914 60.000 0.00 0.00 0.00 3.02
55 56 1.208165 ACTACTCCCCAAGCCCCAAG 61.208 60.000 0.00 0.00 0.00 3.61
56 57 1.151677 ACTACTCCCCAAGCCCCAA 60.152 57.895 0.00 0.00 0.00 4.12
57 58 1.615424 GACTACTCCCCAAGCCCCA 60.615 63.158 0.00 0.00 0.00 4.96
58 59 2.732619 CGACTACTCCCCAAGCCCC 61.733 68.421 0.00 0.00 0.00 5.80
59 60 0.685458 TACGACTACTCCCCAAGCCC 60.685 60.000 0.00 0.00 0.00 5.19
60 61 0.745468 CTACGACTACTCCCCAAGCC 59.255 60.000 0.00 0.00 0.00 4.35
61 62 1.134560 CACTACGACTACTCCCCAAGC 59.865 57.143 0.00 0.00 0.00 4.01
62 63 2.444421 ACACTACGACTACTCCCCAAG 58.556 52.381 0.00 0.00 0.00 3.61
63 64 2.592102 ACACTACGACTACTCCCCAA 57.408 50.000 0.00 0.00 0.00 4.12
64 65 2.305635 TGTACACTACGACTACTCCCCA 59.694 50.000 0.00 0.00 0.00 4.96
65 66 2.991250 TGTACACTACGACTACTCCCC 58.009 52.381 0.00 0.00 0.00 4.81
66 67 4.194640 TCATGTACACTACGACTACTCCC 58.805 47.826 0.00 0.00 0.00 4.30
67 68 4.272991 CCTCATGTACACTACGACTACTCC 59.727 50.000 0.00 0.00 0.00 3.85
68 69 5.114780 TCCTCATGTACACTACGACTACTC 58.885 45.833 0.00 0.00 0.00 2.59
69 70 5.095145 TCCTCATGTACACTACGACTACT 57.905 43.478 0.00 0.00 0.00 2.57
70 71 5.526479 TCATCCTCATGTACACTACGACTAC 59.474 44.000 0.00 0.00 0.00 2.73
71 72 5.677567 TCATCCTCATGTACACTACGACTA 58.322 41.667 0.00 0.00 0.00 2.59
72 73 4.524053 TCATCCTCATGTACACTACGACT 58.476 43.478 0.00 0.00 0.00 4.18
73 74 4.895224 TCATCCTCATGTACACTACGAC 57.105 45.455 0.00 0.00 0.00 4.34
74 75 4.213482 CGATCATCCTCATGTACACTACGA 59.787 45.833 0.00 0.00 0.00 3.43
75 76 4.023963 ACGATCATCCTCATGTACACTACG 60.024 45.833 0.00 0.00 0.00 3.51
76 77 5.440234 ACGATCATCCTCATGTACACTAC 57.560 43.478 0.00 0.00 0.00 2.73
77 78 5.705905 CCTACGATCATCCTCATGTACACTA 59.294 44.000 0.00 0.00 0.00 2.74
78 79 4.520874 CCTACGATCATCCTCATGTACACT 59.479 45.833 0.00 0.00 0.00 3.55
79 80 4.519350 TCCTACGATCATCCTCATGTACAC 59.481 45.833 0.00 0.00 0.00 2.90
80 81 4.725490 TCCTACGATCATCCTCATGTACA 58.275 43.478 0.00 0.00 0.00 2.90
81 82 5.645624 CATCCTACGATCATCCTCATGTAC 58.354 45.833 0.00 0.00 0.00 2.90
82 83 4.158579 GCATCCTACGATCATCCTCATGTA 59.841 45.833 0.00 0.00 0.00 2.29
83 84 3.056250 GCATCCTACGATCATCCTCATGT 60.056 47.826 0.00 0.00 0.00 3.21
84 85 3.195182 AGCATCCTACGATCATCCTCATG 59.805 47.826 0.00 0.00 0.00 3.07
85 86 3.439154 AGCATCCTACGATCATCCTCAT 58.561 45.455 0.00 0.00 0.00 2.90
86 87 2.822561 GAGCATCCTACGATCATCCTCA 59.177 50.000 0.00 0.00 0.00 3.86
87 88 3.502191 GAGCATCCTACGATCATCCTC 57.498 52.381 0.00 0.00 0.00 3.71
105 106 5.998454 AGAATTTGTTATCTGATGCGGAG 57.002 39.130 0.00 0.00 0.00 4.63
231 232 5.385198 GTTCAGGCCCCTTATTATGATGAA 58.615 41.667 0.00 0.00 0.00 2.57
232 233 4.985538 GTTCAGGCCCCTTATTATGATGA 58.014 43.478 0.00 0.00 0.00 2.92
565 566 6.803154 AACAATAAGAGAGGGAAAGAAACG 57.197 37.500 0.00 0.00 0.00 3.60
566 567 9.503399 TTCTAACAATAAGAGAGGGAAAGAAAC 57.497 33.333 0.00 0.00 0.00 2.78
569 570 9.892130 GAATTCTAACAATAAGAGAGGGAAAGA 57.108 33.333 0.00 0.00 0.00 2.52
570 571 9.672673 TGAATTCTAACAATAAGAGAGGGAAAG 57.327 33.333 7.05 0.00 0.00 2.62
571 572 9.449719 GTGAATTCTAACAATAAGAGAGGGAAA 57.550 33.333 7.05 0.00 0.00 3.13
584 586 4.443621 TGTCGTGGTGTGAATTCTAACAA 58.556 39.130 7.05 0.00 0.00 2.83
675 677 2.375766 GCTCGCTGACTCGGTTGTG 61.376 63.158 0.00 0.00 0.00 3.33
716 718 1.001268 TCTTCCGCACTATCAGATCGC 60.001 52.381 0.00 0.00 0.00 4.58
717 719 2.605823 GGTCTTCCGCACTATCAGATCG 60.606 54.545 0.00 0.00 0.00 3.69
751 753 2.879907 GTCGGTCGATCGGTGGAA 59.120 61.111 19.53 0.00 0.00 3.53
788 790 2.294074 TCAGGTTCAAAGTTGTTCGGG 58.706 47.619 0.00 0.00 0.00 5.14
798 800 3.275143 TCAAAGTCGCTTCAGGTTCAAA 58.725 40.909 0.00 0.00 0.00 2.69
916 919 3.495434 TGATCGGTGGTTTGGTTTAGT 57.505 42.857 0.00 0.00 0.00 2.24
917 920 5.385509 AAATGATCGGTGGTTTGGTTTAG 57.614 39.130 0.00 0.00 0.00 1.85
919 922 3.006430 GGAAATGATCGGTGGTTTGGTTT 59.994 43.478 0.00 0.00 0.00 3.27
1043 1057 1.594564 GGGATTACGGAGAAGGCGC 60.595 63.158 0.00 0.00 0.00 6.53
1554 1574 2.956333 TGAGAACAACGAACAGGAGAGA 59.044 45.455 0.00 0.00 0.00 3.10
1586 1606 3.593442 ATGTCCTTCACCCACAAAAGA 57.407 42.857 0.00 0.00 0.00 2.52
1587 1607 5.534654 TCTTTATGTCCTTCACCCACAAAAG 59.465 40.000 0.00 0.00 0.00 2.27
1607 1627 1.080329 AGAGCTTCCTCCCTCCTCTTT 59.920 52.381 0.00 0.00 38.96 2.52
1634 1654 2.935849 CAATGCATGTAGAAGCGTACCA 59.064 45.455 0.00 0.00 0.00 3.25
1648 1668 3.548770 CACTGATGTAGACCCAATGCAT 58.451 45.455 0.00 0.00 0.00 3.96
1696 1717 9.182214 AGCTACATGATAACACAAGATTCAATT 57.818 29.630 0.00 0.00 0.00 2.32
1755 1776 3.635591 GTGGTGGATGATTGGGAAGAAT 58.364 45.455 0.00 0.00 0.00 2.40
1786 1807 1.531677 CGCGTTGGCTGGTATTTCATG 60.532 52.381 0.00 0.00 36.88 3.07
2266 2323 5.128919 AGCCAGAAAGCATTGACTATTAGG 58.871 41.667 0.00 0.00 34.23 2.69
2340 2822 4.486125 TGCATGTTAGGCTGATACAGAA 57.514 40.909 0.00 0.00 32.44 3.02
2342 2824 5.759763 TGTTATGCATGTTAGGCTGATACAG 59.240 40.000 10.16 0.00 34.12 2.74
2426 2908 4.142071 TGCTAGGAGAAGTACATTGCAGAG 60.142 45.833 0.00 0.00 0.00 3.35
2433 2915 6.768861 CACTACTAGTGCTAGGAGAAGTACAT 59.231 42.308 21.66 0.00 45.03 2.29
2631 3113 1.073763 AGCCAATGTGGAGCTACAACA 59.926 47.619 0.00 1.31 40.96 3.33
2680 3162 3.777478 TGACTTCCCACGAAATACGATC 58.223 45.455 0.00 0.00 45.77 3.69
2741 3223 9.095065 CGTATTAAAACTCTAGGCAGTAATTGT 57.905 33.333 0.00 0.00 0.00 2.71
2757 3239 8.813643 ACAGTGGCTATCTATCGTATTAAAAC 57.186 34.615 0.00 0.00 0.00 2.43
3027 3512 7.339466 AGAAAGATCGTTGGCCTTAAATGTTAT 59.661 33.333 3.32 0.00 0.00 1.89
3073 3558 3.181467 CCAGTGAAAACAAGGCAAATCCA 60.181 43.478 0.00 0.00 37.29 3.41
3208 3693 1.201429 ACCCAAAGATGAGCGAGGGT 61.201 55.000 0.00 0.00 44.40 4.34
3262 3747 7.284261 TCAAACTGTGTGATCCAAGTAAATGAA 59.716 33.333 0.00 0.00 0.00 2.57
3279 3764 9.778993 CATCTCCAATTACTAATTCAAACTGTG 57.221 33.333 0.00 0.00 0.00 3.66
3443 3963 8.035394 AGTAAACACTAGTATCACAACTGGATG 58.965 37.037 0.00 0.00 32.68 3.51
3487 4007 3.668447 ACTGTGCTTGACTGATGGTTAG 58.332 45.455 0.00 0.00 0.00 2.34
3500 4021 7.122204 AGGTAAGTTTACTGAAAAACTGTGCTT 59.878 33.333 11.59 0.00 46.40 3.91
3546 4067 9.010029 TCTGTTGAAACAAATATAAGGAAGACC 57.990 33.333 0.00 0.00 38.66 3.85
3616 4137 1.743252 GCTCGCTCAACCTTCCTGG 60.743 63.158 0.00 0.00 42.93 4.45
3624 4145 1.081892 ATGTGACATGCTCGCTCAAC 58.918 50.000 0.00 0.00 0.00 3.18
3736 4260 3.008375 AGAGCAAGATCAAGTAAGTGCCA 59.992 43.478 0.00 0.00 32.38 4.92
3737 4261 3.604582 AGAGCAAGATCAAGTAAGTGCC 58.395 45.455 0.00 0.00 32.38 5.01
3961 4485 6.696148 ACGTTTGTTACACTTCTACTCTCTTG 59.304 38.462 0.00 0.00 0.00 3.02
3983 4507 9.136952 GTTCAAGAGATAACACTAATACAACGT 57.863 33.333 0.00 0.00 0.00 3.99
4005 4529 6.827586 AGGTTTTAAACAACAGACAGTTCA 57.172 33.333 10.14 0.00 38.74 3.18
4011 4535 7.039313 AGATCCAAGGTTTTAAACAACAGAC 57.961 36.000 10.14 0.00 0.00 3.51
4025 4549 8.376270 GCAGTTTATATAGGTAAGATCCAAGGT 58.624 37.037 0.00 0.00 0.00 3.50
4080 4605 7.273164 CGAATCAAATATGCAAACAAACTAGCA 59.727 33.333 0.00 0.00 41.73 3.49
4116 4641 1.155042 CTCGCAGAAGAAAGCAGCTT 58.845 50.000 0.21 0.21 34.09 3.74
4124 4649 1.078214 CATGGCCCTCGCAGAAGAA 60.078 57.895 0.00 0.00 34.09 2.52
4147 5751 4.499188 GGTTTTGCTGTCTTTAGGTTCCAC 60.499 45.833 0.00 0.00 0.00 4.02
4314 5920 6.346477 TCATAGTACATGGTAGGATTCAGC 57.654 41.667 0.00 0.00 0.00 4.26
4527 6134 2.158784 AGAGCCCATCTCAGATTTCAGC 60.159 50.000 0.00 0.00 44.35 4.26
4528 6135 3.842007 AGAGCCCATCTCAGATTTCAG 57.158 47.619 0.00 0.00 44.35 3.02
4529 6136 3.645212 CCTAGAGCCCATCTCAGATTTCA 59.355 47.826 0.00 0.00 44.35 2.69
4530 6137 3.556843 GCCTAGAGCCCATCTCAGATTTC 60.557 52.174 0.00 0.00 44.35 2.17
4531 6138 2.371510 GCCTAGAGCCCATCTCAGATTT 59.628 50.000 0.00 0.00 44.35 2.17
4532 6139 1.977129 GCCTAGAGCCCATCTCAGATT 59.023 52.381 0.00 0.00 44.35 2.40
4533 6140 1.643310 GCCTAGAGCCCATCTCAGAT 58.357 55.000 0.00 0.00 44.35 2.90
4534 6141 3.139810 GCCTAGAGCCCATCTCAGA 57.860 57.895 0.00 0.00 44.35 3.27
4544 6151 2.276732 TTGCAATATGGGCCTAGAGC 57.723 50.000 4.53 3.23 42.60 4.09
4545 6152 5.048224 CAGAAATTGCAATATGGGCCTAGAG 60.048 44.000 13.39 0.00 0.00 2.43
4546 6153 4.828939 CAGAAATTGCAATATGGGCCTAGA 59.171 41.667 13.39 0.00 0.00 2.43
4547 6154 4.828939 TCAGAAATTGCAATATGGGCCTAG 59.171 41.667 13.39 0.00 0.00 3.02
4548 6155 4.802307 TCAGAAATTGCAATATGGGCCTA 58.198 39.130 13.39 0.00 0.00 3.93
4549 6156 3.645434 TCAGAAATTGCAATATGGGCCT 58.355 40.909 13.39 1.29 0.00 5.19
4550 6157 4.405116 TTCAGAAATTGCAATATGGGCC 57.595 40.909 13.39 0.00 0.00 5.80
4551 6158 6.740411 TTTTTCAGAAATTGCAATATGGGC 57.260 33.333 13.39 0.85 0.00 5.36
4552 6159 8.726870 AGATTTTTCAGAAATTGCAATATGGG 57.273 30.769 13.39 3.65 0.00 4.00
4553 6160 9.595823 AGAGATTTTTCAGAAATTGCAATATGG 57.404 29.630 13.39 3.28 0.00 2.74
4557 6164 9.649167 CCTTAGAGATTTTTCAGAAATTGCAAT 57.351 29.630 5.99 5.99 0.00 3.56
4558 6165 8.090214 CCCTTAGAGATTTTTCAGAAATTGCAA 58.910 33.333 0.00 0.00 0.00 4.08
4559 6166 7.605449 CCCTTAGAGATTTTTCAGAAATTGCA 58.395 34.615 0.00 0.00 0.00 4.08
4560 6167 6.533012 GCCCTTAGAGATTTTTCAGAAATTGC 59.467 38.462 0.00 0.00 0.00 3.56
4561 6168 7.038048 GGCCCTTAGAGATTTTTCAGAAATTG 58.962 38.462 0.00 0.00 0.00 2.32
4562 6169 6.155221 GGGCCCTTAGAGATTTTTCAGAAATT 59.845 38.462 17.04 0.00 0.00 1.82
4563 6170 5.658634 GGGCCCTTAGAGATTTTTCAGAAAT 59.341 40.000 17.04 0.00 0.00 2.17
4564 6171 5.016831 GGGCCCTTAGAGATTTTTCAGAAA 58.983 41.667 17.04 0.00 0.00 2.52
4565 6172 4.044065 TGGGCCCTTAGAGATTTTTCAGAA 59.956 41.667 25.70 0.00 0.00 3.02
4566 6173 3.591527 TGGGCCCTTAGAGATTTTTCAGA 59.408 43.478 25.70 0.00 0.00 3.27
4567 6174 3.968265 TGGGCCCTTAGAGATTTTTCAG 58.032 45.455 25.70 0.00 0.00 3.02
4568 6175 4.264352 ACATGGGCCCTTAGAGATTTTTCA 60.264 41.667 25.70 0.00 0.00 2.69
4569 6176 4.098501 CACATGGGCCCTTAGAGATTTTTC 59.901 45.833 25.70 0.00 0.00 2.29
4570 6177 4.026052 CACATGGGCCCTTAGAGATTTTT 58.974 43.478 25.70 0.00 0.00 1.94
4571 6178 3.628257 CCACATGGGCCCTTAGAGATTTT 60.628 47.826 25.70 0.00 0.00 1.82
4572 6179 2.091665 CCACATGGGCCCTTAGAGATTT 60.092 50.000 25.70 0.00 0.00 2.17
4573 6180 1.496429 CCACATGGGCCCTTAGAGATT 59.504 52.381 25.70 0.00 0.00 2.40
4574 6181 1.143813 CCACATGGGCCCTTAGAGAT 58.856 55.000 25.70 3.22 0.00 2.75
4575 6182 2.620234 CCACATGGGCCCTTAGAGA 58.380 57.895 25.70 0.07 0.00 3.10
4586 6193 3.228188 AGTGCCATATAACCCACATGG 57.772 47.619 0.00 0.00 41.85 3.66
4587 6194 4.202461 ACCTAGTGCCATATAACCCACATG 60.202 45.833 0.00 0.00 0.00 3.21
4588 6195 3.980698 ACCTAGTGCCATATAACCCACAT 59.019 43.478 0.00 0.00 0.00 3.21
4589 6196 3.135712 CACCTAGTGCCATATAACCCACA 59.864 47.826 0.00 0.00 0.00 4.17
4590 6197 3.135895 ACACCTAGTGCCATATAACCCAC 59.864 47.826 0.00 0.00 36.98 4.61
4591 6198 3.135712 CACACCTAGTGCCATATAACCCA 59.864 47.826 0.00 0.00 42.15 4.51
4592 6199 3.740115 CACACCTAGTGCCATATAACCC 58.260 50.000 0.00 0.00 42.15 4.11
4604 6211 1.815757 AACTTCCCACCACACCTAGT 58.184 50.000 0.00 0.00 0.00 2.57
4605 6212 2.951229 AAACTTCCCACCACACCTAG 57.049 50.000 0.00 0.00 0.00 3.02
4606 6213 3.320129 ACTAAACTTCCCACCACACCTA 58.680 45.455 0.00 0.00 0.00 3.08
4607 6214 2.105993 GACTAAACTTCCCACCACACCT 59.894 50.000 0.00 0.00 0.00 4.00
4608 6215 2.501261 GACTAAACTTCCCACCACACC 58.499 52.381 0.00 0.00 0.00 4.16
4609 6216 2.501261 GGACTAAACTTCCCACCACAC 58.499 52.381 0.00 0.00 0.00 3.82
4610 6217 2.943036 GGACTAAACTTCCCACCACA 57.057 50.000 0.00 0.00 0.00 4.17
4617 6224 1.066358 CCGGAGTGGGACTAAACTTCC 60.066 57.143 0.00 0.00 0.00 3.46
4618 6225 1.897802 TCCGGAGTGGGACTAAACTTC 59.102 52.381 0.00 0.00 38.76 3.01
4619 6226 2.019807 TCCGGAGTGGGACTAAACTT 57.980 50.000 0.00 0.00 38.76 2.66
4620 6227 1.900486 CTTCCGGAGTGGGACTAAACT 59.100 52.381 3.34 0.00 38.76 2.66
4621 6228 1.622312 ACTTCCGGAGTGGGACTAAAC 59.378 52.381 3.34 0.00 37.17 2.01
4622 6229 2.019807 ACTTCCGGAGTGGGACTAAA 57.980 50.000 3.34 0.00 37.17 1.85
4623 6230 3.780307 ACTTCCGGAGTGGGACTAA 57.220 52.632 3.34 0.00 37.17 2.24
4631 6238 0.114560 TCTCCTTCCACTTCCGGAGT 59.885 55.000 3.34 2.07 42.80 3.85
4632 6239 0.820871 CTCTCCTTCCACTTCCGGAG 59.179 60.000 3.34 1.34 43.44 4.63
4633 6240 0.114560 ACTCTCCTTCCACTTCCGGA 59.885 55.000 0.00 0.00 0.00 5.14
4634 6241 0.977395 AACTCTCCTTCCACTTCCGG 59.023 55.000 0.00 0.00 0.00 5.14
4635 6242 1.338200 CCAACTCTCCTTCCACTTCCG 60.338 57.143 0.00 0.00 0.00 4.30
4636 6243 1.978580 TCCAACTCTCCTTCCACTTCC 59.021 52.381 0.00 0.00 0.00 3.46
4637 6244 2.635427 ACTCCAACTCTCCTTCCACTTC 59.365 50.000 0.00 0.00 0.00 3.01
4638 6245 2.370189 CACTCCAACTCTCCTTCCACTT 59.630 50.000 0.00 0.00 0.00 3.16
4639 6246 1.974236 CACTCCAACTCTCCTTCCACT 59.026 52.381 0.00 0.00 0.00 4.00
4640 6247 1.002544 CCACTCCAACTCTCCTTCCAC 59.997 57.143 0.00 0.00 0.00 4.02
4641 6248 1.352083 CCACTCCAACTCTCCTTCCA 58.648 55.000 0.00 0.00 0.00 3.53
4642 6249 1.353091 ACCACTCCAACTCTCCTTCC 58.647 55.000 0.00 0.00 0.00 3.46
4643 6250 3.493767 AAACCACTCCAACTCTCCTTC 57.506 47.619 0.00 0.00 0.00 3.46
4644 6251 6.296489 CCTTATAAACCACTCCAACTCTCCTT 60.296 42.308 0.00 0.00 0.00 3.36
4645 6252 5.189934 CCTTATAAACCACTCCAACTCTCCT 59.810 44.000 0.00 0.00 0.00 3.69
4646 6253 5.429130 CCTTATAAACCACTCCAACTCTCC 58.571 45.833 0.00 0.00 0.00 3.71
4647 6254 5.045797 ACCCTTATAAACCACTCCAACTCTC 60.046 44.000 0.00 0.00 0.00 3.20
4648 6255 4.850386 ACCCTTATAAACCACTCCAACTCT 59.150 41.667 0.00 0.00 0.00 3.24
4649 6256 5.175388 ACCCTTATAAACCACTCCAACTC 57.825 43.478 0.00 0.00 0.00 3.01
4650 6257 5.594199 AACCCTTATAAACCACTCCAACT 57.406 39.130 0.00 0.00 0.00 3.16
4651 6258 6.008331 AGAAACCCTTATAAACCACTCCAAC 58.992 40.000 0.00 0.00 0.00 3.77
4652 6259 6.045106 AGAGAAACCCTTATAAACCACTCCAA 59.955 38.462 0.00 0.00 0.00 3.53
4653 6260 5.550403 AGAGAAACCCTTATAAACCACTCCA 59.450 40.000 0.00 0.00 0.00 3.86
4654 6261 6.063496 AGAGAAACCCTTATAAACCACTCC 57.937 41.667 0.00 0.00 0.00 3.85
4655 6262 7.395617 AGAAGAGAAACCCTTATAAACCACTC 58.604 38.462 0.00 0.00 0.00 3.51
4656 6263 7.331089 AGAAGAGAAACCCTTATAAACCACT 57.669 36.000 0.00 0.00 0.00 4.00
4657 6264 8.098912 TGTAGAAGAGAAACCCTTATAAACCAC 58.901 37.037 0.00 0.00 0.00 4.16
4658 6265 8.209802 TGTAGAAGAGAAACCCTTATAAACCA 57.790 34.615 0.00 0.00 0.00 3.67
4659 6266 9.110502 CATGTAGAAGAGAAACCCTTATAAACC 57.889 37.037 0.00 0.00 0.00 3.27
4660 6267 8.613482 GCATGTAGAAGAGAAACCCTTATAAAC 58.387 37.037 0.00 0.00 0.00 2.01
4661 6268 8.548877 AGCATGTAGAAGAGAAACCCTTATAAA 58.451 33.333 0.00 0.00 0.00 1.40
4662 6269 8.090788 AGCATGTAGAAGAGAAACCCTTATAA 57.909 34.615 0.00 0.00 0.00 0.98
4663 6270 7.676683 AGCATGTAGAAGAGAAACCCTTATA 57.323 36.000 0.00 0.00 0.00 0.98
4664 6271 6.567602 AGCATGTAGAAGAGAAACCCTTAT 57.432 37.500 0.00 0.00 0.00 1.73
4665 6272 7.676683 ATAGCATGTAGAAGAGAAACCCTTA 57.323 36.000 0.00 0.00 0.00 2.69
4666 6273 4.917906 AGCATGTAGAAGAGAAACCCTT 57.082 40.909 0.00 0.00 0.00 3.95
4667 6274 6.352516 CAATAGCATGTAGAAGAGAAACCCT 58.647 40.000 0.00 0.00 0.00 4.34
4668 6275 5.529060 CCAATAGCATGTAGAAGAGAAACCC 59.471 44.000 0.00 0.00 0.00 4.11
4669 6276 6.349300 TCCAATAGCATGTAGAAGAGAAACC 58.651 40.000 0.00 0.00 0.00 3.27
4670 6277 7.475771 CTCCAATAGCATGTAGAAGAGAAAC 57.524 40.000 0.00 0.00 0.00 2.78
4686 6293 6.219417 TCTTCTCTTCTCAAGCTCCAATAG 57.781 41.667 0.00 0.00 0.00 1.73
4687 6294 5.128499 CCTCTTCTCTTCTCAAGCTCCAATA 59.872 44.000 0.00 0.00 0.00 1.90
4688 6295 4.080975 CCTCTTCTCTTCTCAAGCTCCAAT 60.081 45.833 0.00 0.00 0.00 3.16
4689 6296 3.260380 CCTCTTCTCTTCTCAAGCTCCAA 59.740 47.826 0.00 0.00 0.00 3.53
4690 6297 2.830923 CCTCTTCTCTTCTCAAGCTCCA 59.169 50.000 0.00 0.00 0.00 3.86
4691 6298 2.418609 GCCTCTTCTCTTCTCAAGCTCC 60.419 54.545 0.00 0.00 0.00 4.70
4692 6299 2.418609 GGCCTCTTCTCTTCTCAAGCTC 60.419 54.545 0.00 0.00 0.00 4.09
4693 6300 1.554617 GGCCTCTTCTCTTCTCAAGCT 59.445 52.381 0.00 0.00 0.00 3.74
4694 6301 1.406751 GGGCCTCTTCTCTTCTCAAGC 60.407 57.143 0.84 0.00 0.00 4.01
4695 6302 2.168313 GAGGGCCTCTTCTCTTCTCAAG 59.832 54.545 26.44 0.00 0.00 3.02
4696 6303 2.183679 GAGGGCCTCTTCTCTTCTCAA 58.816 52.381 26.44 0.00 0.00 3.02
4697 6304 1.859302 GAGGGCCTCTTCTCTTCTCA 58.141 55.000 26.44 0.00 0.00 3.27
4698 6305 0.744281 CGAGGGCCTCTTCTCTTCTC 59.256 60.000 29.81 1.86 0.00 2.87
4699 6306 1.326951 GCGAGGGCCTCTTCTCTTCT 61.327 60.000 29.81 0.00 0.00 2.85
4700 6307 1.142965 GCGAGGGCCTCTTCTCTTC 59.857 63.158 29.81 3.42 0.00 2.87
4701 6308 2.716017 CGCGAGGGCCTCTTCTCTT 61.716 63.158 29.81 0.00 35.02 2.85
4702 6309 3.144193 CGCGAGGGCCTCTTCTCT 61.144 66.667 29.81 0.00 35.02 3.10
4703 6310 4.882396 GCGCGAGGGCCTCTTCTC 62.882 72.222 29.81 13.49 35.02 2.87
4713 6320 4.200283 GAGGAGGAGTGCGCGAGG 62.200 72.222 12.10 0.00 0.00 4.63
4714 6321 4.200283 GGAGGAGGAGTGCGCGAG 62.200 72.222 12.10 0.00 0.00 5.03
4749 6356 4.467084 TCGGCTCAATCCCACGGC 62.467 66.667 0.00 0.00 0.00 5.68
4750 6357 2.202932 CTCGGCTCAATCCCACGG 60.203 66.667 0.00 0.00 0.00 4.94
4751 6358 2.892425 GCTCGGCTCAATCCCACG 60.892 66.667 0.00 0.00 0.00 4.94
4752 6359 2.514824 GGCTCGGCTCAATCCCAC 60.515 66.667 0.00 0.00 0.00 4.61
4753 6360 4.161295 CGGCTCGGCTCAATCCCA 62.161 66.667 0.00 0.00 0.00 4.37
4754 6361 3.798954 CTCGGCTCGGCTCAATCCC 62.799 68.421 0.00 0.00 0.00 3.85
4755 6362 2.279784 CTCGGCTCGGCTCAATCC 60.280 66.667 0.00 0.00 0.00 3.01
4756 6363 2.964389 GCTCGGCTCGGCTCAATC 60.964 66.667 0.00 0.00 0.00 2.67
4757 6364 3.465403 AGCTCGGCTCGGCTCAAT 61.465 61.111 5.30 0.00 30.62 2.57
4766 6373 2.701780 CGTAGGTGTGAGCTCGGCT 61.702 63.158 9.64 0.00 43.88 5.52
4767 6374 2.202623 CGTAGGTGTGAGCTCGGC 60.203 66.667 9.64 5.16 0.00 5.54
4768 6375 2.202623 GCGTAGGTGTGAGCTCGG 60.203 66.667 9.64 0.00 0.00 4.63
4769 6376 2.577112 CGCGTAGGTGTGAGCTCG 60.577 66.667 9.64 0.00 0.00 5.03
4770 6377 2.820767 AAGCGCGTAGGTGTGAGCTC 62.821 60.000 8.43 6.82 33.42 4.09
4771 6378 1.592400 TAAGCGCGTAGGTGTGAGCT 61.592 55.000 8.43 0.00 36.40 4.09
4772 6379 0.527817 ATAAGCGCGTAGGTGTGAGC 60.528 55.000 8.43 0.00 0.00 4.26
4773 6380 1.922570 AATAAGCGCGTAGGTGTGAG 58.077 50.000 8.43 0.00 0.00 3.51
4774 6381 2.373540 AAATAAGCGCGTAGGTGTGA 57.626 45.000 8.43 0.00 0.00 3.58
4775 6382 3.160545 CAAAAATAAGCGCGTAGGTGTG 58.839 45.455 8.43 0.89 0.00 3.82
4776 6383 2.413634 GCAAAAATAAGCGCGTAGGTGT 60.414 45.455 8.43 0.00 0.00 4.16
4777 6384 2.173964 GCAAAAATAAGCGCGTAGGTG 58.826 47.619 8.43 5.31 0.00 4.00
4778 6385 1.131693 GGCAAAAATAAGCGCGTAGGT 59.868 47.619 8.43 0.00 0.00 3.08
4779 6386 1.131504 TGGCAAAAATAAGCGCGTAGG 59.868 47.619 8.43 0.00 0.00 3.18
4780 6387 2.159572 ACTGGCAAAAATAAGCGCGTAG 60.160 45.455 8.43 0.00 0.00 3.51
4781 6388 1.807742 ACTGGCAAAAATAAGCGCGTA 59.192 42.857 8.43 5.30 0.00 4.42
4782 6389 0.596082 ACTGGCAAAAATAAGCGCGT 59.404 45.000 8.43 0.00 0.00 6.01
4783 6390 1.259316 GACTGGCAAAAATAAGCGCG 58.741 50.000 0.00 0.00 0.00 6.86
4784 6391 1.985684 GTGACTGGCAAAAATAAGCGC 59.014 47.619 0.00 0.00 0.00 5.92
4785 6392 3.559238 AGTGACTGGCAAAAATAAGCG 57.441 42.857 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.