Multiple sequence alignment - TraesCS6A01G266600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G266600 chr6A 100.000 4570 0 0 1 4570 492279057 492283626 0.000000e+00 8440.0
1 TraesCS6A01G266600 chr6B 88.857 2082 138 42 4 2027 528280965 528283010 0.000000e+00 2473.0
2 TraesCS6A01G266600 chr6B 93.131 990 32 9 2796 3782 528283585 528284541 0.000000e+00 1419.0
3 TraesCS6A01G266600 chr6B 93.638 503 14 11 2036 2521 528283050 528283551 0.000000e+00 736.0
4 TraesCS6A01G266600 chr6B 93.987 449 20 2 4073 4521 528284951 528285392 0.000000e+00 673.0
5 TraesCS6A01G266600 chr6B 97.436 39 0 1 2688 2725 528283554 528283592 1.060000e-06 65.8
6 TraesCS6A01G266600 chr6D 93.977 1544 58 10 387 1919 351142435 351140916 0.000000e+00 2303.0
7 TraesCS6A01G266600 chr6D 96.047 1012 36 3 2778 3788 351139784 351138776 0.000000e+00 1644.0
8 TraesCS6A01G266600 chr6D 88.590 929 31 15 1918 2773 351140754 351139828 0.000000e+00 1059.0
9 TraesCS6A01G266600 chr6D 92.683 451 27 2 4073 4521 351138381 351137935 0.000000e+00 645.0
10 TraesCS6A01G266600 chr6D 87.595 395 38 5 4 389 351143863 351143471 9.020000e-122 448.0
11 TraesCS6A01G266600 chr6D 93.548 62 2 2 2718 2778 289353058 289353118 1.750000e-14 91.6
12 TraesCS6A01G266600 chr2D 85.502 538 75 3 988 1522 5684603 5684066 3.990000e-155 558.0
13 TraesCS6A01G266600 chr2D 85.799 338 44 4 2074 2408 5682570 5682234 5.620000e-94 355.0
14 TraesCS6A01G266600 chr2D 84.058 276 40 4 2129 2402 5709686 5709413 3.510000e-66 263.0
15 TraesCS6A01G266600 chr2A 85.686 510 73 0 1013 1522 4171727 4171218 5.200000e-149 538.0
16 TraesCS6A01G266600 chr2A 86.916 321 38 3 2074 2393 4169596 4169279 1.560000e-94 357.0
17 TraesCS6A01G266600 chr2A 89.850 266 27 0 2093 2358 4204446 4204181 4.380000e-90 342.0
18 TraesCS6A01G266600 chr2A 93.651 63 2 2 2718 2779 78256264 78256325 4.870000e-15 93.5
19 TraesCS6A01G266600 chr2A 90.769 65 4 2 2716 2779 715639668 715639731 8.150000e-13 86.1
20 TraesCS6A01G266600 chr2B 84.544 537 80 1 989 1522 5678101 5678637 3.130000e-146 529.0
21 TraesCS6A01G266600 chr2B 87.850 321 38 1 2074 2393 5680243 5680563 4.320000e-100 375.0
22 TraesCS6A01G266600 chr3D 93.548 62 2 2 2719 2779 174076768 174076828 1.750000e-14 91.6
23 TraesCS6A01G266600 chr7D 93.443 61 2 2 2719 2778 76562728 76562669 6.300000e-14 89.8
24 TraesCS6A01G266600 chr7D 100.000 28 0 0 2778 2805 556782739 556782712 8.000000e-03 52.8
25 TraesCS6A01G266600 chr7B 92.063 63 3 2 2718 2779 1440209 1440270 2.260000e-13 87.9
26 TraesCS6A01G266600 chr5A 90.909 66 4 2 2718 2782 622779363 622779299 2.260000e-13 87.9
27 TraesCS6A01G266600 chr3B 90.769 65 4 2 2719 2782 427579994 427579931 8.150000e-13 86.1
28 TraesCS6A01G266600 chr1D 90.909 55 5 0 26 80 452756929 452756983 1.760000e-09 75.0
29 TraesCS6A01G266600 chr1D 93.023 43 3 0 1666 1708 117969069 117969111 3.820000e-06 63.9
30 TraesCS6A01G266600 chr5D 100.000 29 0 0 2778 2806 98735271 98735243 2.000000e-03 54.7
31 TraesCS6A01G266600 chr4B 100.000 29 0 0 2778 2806 190690822 190690794 2.000000e-03 54.7
32 TraesCS6A01G266600 chr1B 100.000 29 0 0 2778 2806 496560001 496559973 2.000000e-03 54.7
33 TraesCS6A01G266600 chr1A 100.000 28 0 0 2778 2805 13353587 13353614 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G266600 chr6A 492279057 492283626 4569 False 8440.00 8440 100.0000 1 4570 1 chr6A.!!$F1 4569
1 TraesCS6A01G266600 chr6B 528280965 528285392 4427 False 1073.36 2473 93.4098 4 4521 5 chr6B.!!$F1 4517
2 TraesCS6A01G266600 chr6D 351137935 351143863 5928 True 1219.80 2303 91.7784 4 4521 5 chr6D.!!$R1 4517
3 TraesCS6A01G266600 chr2D 5682234 5684603 2369 True 456.50 558 85.6505 988 2408 2 chr2D.!!$R2 1420
4 TraesCS6A01G266600 chr2A 4169279 4171727 2448 True 447.50 538 86.3010 1013 2393 2 chr2A.!!$R2 1380
5 TraesCS6A01G266600 chr2B 5678101 5680563 2462 False 452.00 529 86.1970 989 2393 2 chr2B.!!$F1 1404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.319813 GCAAGCCGTTTCAATGCCTT 60.320 50.000 0.00 0.00 0.00 4.35 F
245 247 0.744414 ACGGGCCATGATTGTCGAAG 60.744 55.000 4.39 0.00 0.00 3.79 F
1826 3508 0.033504 GCTTCGTGGAACCACTCAGA 59.966 55.000 19.61 8.73 44.16 3.27 F
2551 5045 1.064758 ACTGTCACTTGGTTTGGCTCA 60.065 47.619 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1458 2559 0.549950 CACCAGATTCTCCCCATGCT 59.450 55.000 0.00 0.0 0.00 3.79 R
2030 4475 1.131693 GGCACTAACCATTACCAACGC 59.868 52.381 0.00 0.0 0.00 4.84 R
3236 5959 0.034670 AGAGCAAGGCCTCATTGTCC 60.035 55.000 5.23 0.0 34.26 4.02 R
3994 6871 0.035152 TGGCTGTTAGTGAGGCATGG 60.035 55.000 0.00 0.0 40.80 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.805671 CAATAACGCATCTCCGGCATTA 59.194 45.455 0.00 0.00 0.00 1.90
43 44 2.859806 GCATCTCCGGCATTAAACATGC 60.860 50.000 0.00 0.00 43.85 4.06
102 103 1.290009 GCAAGCCGTTTCAATGCCT 59.710 52.632 0.00 0.00 0.00 4.75
103 104 0.319813 GCAAGCCGTTTCAATGCCTT 60.320 50.000 0.00 0.00 0.00 4.35
130 132 5.816258 TCAATGAAAGATCACATCTGCTCTC 59.184 40.000 0.00 0.00 40.13 3.20
131 133 4.134379 TGAAAGATCACATCTGCTCTCC 57.866 45.455 0.00 0.00 40.13 3.71
145 147 2.126071 CTCCGTCGGCGTCAATGT 60.126 61.111 9.28 0.00 36.15 2.71
146 148 2.431771 TCCGTCGGCGTCAATGTG 60.432 61.111 9.28 0.00 36.15 3.21
202 204 5.007921 GCAACTGCTTCAAATGAAAAATGGT 59.992 36.000 0.00 0.00 38.21 3.55
212 214 5.389859 AATGAAAAATGGTGCGAATGAGA 57.610 34.783 0.00 0.00 0.00 3.27
227 229 4.550422 GAATGAGAAAGAGGGTTTTGCAC 58.450 43.478 0.00 0.00 0.00 4.57
229 231 1.266989 GAGAAAGAGGGTTTTGCACGG 59.733 52.381 0.00 0.00 0.00 4.94
245 247 0.744414 ACGGGCCATGATTGTCGAAG 60.744 55.000 4.39 0.00 0.00 3.79
247 249 1.353103 GGCCATGATTGTCGAAGCG 59.647 57.895 0.00 0.00 0.00 4.68
248 250 1.369091 GGCCATGATTGTCGAAGCGT 61.369 55.000 0.00 0.00 0.00 5.07
271 273 3.770040 TGGCATCGGTCCGGACAG 61.770 66.667 34.40 30.52 0.00 3.51
299 306 2.920912 TCTCTCCCCGGTTTGCGT 60.921 61.111 0.00 0.00 0.00 5.24
350 357 2.217750 CGGATGTGGGCGAATTATCAA 58.782 47.619 0.00 0.00 0.00 2.57
358 365 2.582052 GGCGAATTATCAATGGGTGGA 58.418 47.619 0.00 0.00 0.00 4.02
359 366 2.554032 GGCGAATTATCAATGGGTGGAG 59.446 50.000 0.00 0.00 0.00 3.86
390 1442 3.503363 TGCATGAACAAATCCACTGACTC 59.497 43.478 0.00 0.00 0.00 3.36
397 1449 4.253685 ACAAATCCACTGACTCCATAACG 58.746 43.478 0.00 0.00 0.00 3.18
434 1488 3.921677 GTCAGAAGACATACGGGTCAAA 58.078 45.455 6.86 0.00 44.34 2.69
435 1489 4.504858 GTCAGAAGACATACGGGTCAAAT 58.495 43.478 6.86 0.00 44.34 2.32
443 1497 1.448985 TACGGGTCAAATTGCAGAGC 58.551 50.000 0.00 0.00 0.00 4.09
460 1514 2.526120 GCGTGCCGTCTGCCTAATC 61.526 63.158 0.00 0.00 40.16 1.75
464 1518 0.750850 TGCCGTCTGCCTAATCCTAC 59.249 55.000 0.00 0.00 40.16 3.18
491 1545 2.903375 TTTTTAGTGGCCCGGGTTAT 57.097 45.000 24.63 8.66 0.00 1.89
527 1581 2.416372 GAATATGGTGCGAGCGCGTG 62.416 60.000 12.44 0.00 45.51 5.34
571 1625 5.131475 TCCTCCCTAAAGTACAACAGTTGTT 59.869 40.000 23.88 8.80 42.22 2.83
656 1718 3.047877 CACCGGCGAACTCCAACC 61.048 66.667 9.30 0.00 0.00 3.77
729 1791 3.913573 CGCCGCAGTTCGATTCGG 61.914 66.667 6.18 9.76 44.29 4.30
824 1886 1.218047 GCTTTCCCCCAATTTCGGC 59.782 57.895 0.00 0.00 0.00 5.54
853 1915 1.901464 GTTGCGCCCTCCCTTTCAA 60.901 57.895 4.18 0.00 0.00 2.69
860 1922 1.472878 GCCCTCCCTTTCAATTTCGAC 59.527 52.381 0.00 0.00 0.00 4.20
882 1969 4.202695 ACCCTCTGGTCTACTAACAACTCT 60.203 45.833 0.00 0.00 43.06 3.24
987 2085 2.566036 CGTGCGATTTTTCTTTGCGTA 58.434 42.857 0.00 0.00 0.00 4.42
1254 2355 1.733399 GGTGAACAGCGTCGACCTC 60.733 63.158 10.58 1.88 0.00 3.85
1446 2547 2.755103 CAATAACAGGAACAAGGCCCTC 59.245 50.000 0.00 0.00 0.00 4.30
1458 2559 1.377202 GGCCCTCACGCTCATTGAA 60.377 57.895 0.00 0.00 0.00 2.69
1470 2571 2.947243 GCTCATTGAAGCATGGGGAGAA 60.947 50.000 0.00 0.00 42.05 2.87
1617 2718 4.522789 AGATTTGCTAATTTTGTCCCGTGT 59.477 37.500 0.00 0.00 0.00 4.49
1626 2727 2.048127 GTCCCGTGTCAGTGAGGC 60.048 66.667 0.00 0.00 0.00 4.70
1674 2775 2.666317 TCAGCCACGATAATCTCCTCA 58.334 47.619 0.00 0.00 0.00 3.86
1722 2823 7.865706 AAAATAAAGCCACGATAATCTCTGT 57.134 32.000 0.00 0.00 0.00 3.41
1826 3508 0.033504 GCTTCGTGGAACCACTCAGA 59.966 55.000 19.61 8.73 44.16 3.27
1837 3519 4.283722 GGAACCACTCAGACCTCTCTTTAA 59.716 45.833 0.00 0.00 0.00 1.52
1908 4165 6.529125 GTCATTGCTTTATTCATCACCTTGTG 59.471 38.462 0.00 0.00 34.45 3.33
1916 4198 7.615582 TTATTCATCACCTTGTGAATCACTC 57.384 36.000 14.97 0.00 45.96 3.51
1922 4367 6.850752 TCACCTTGTGAATCACTCAGTATA 57.149 37.500 14.97 0.00 39.78 1.47
1935 4380 5.363868 TCACTCAGTATATTTGGTAGCAGCT 59.636 40.000 0.00 0.00 0.00 4.24
1995 4440 4.709397 TCCAAAAGTTGTTTCAGTGTCCAT 59.291 37.500 0.00 0.00 0.00 3.41
2037 4514 3.118038 ACCCATATGATTAGTGCGTTGGT 60.118 43.478 3.65 0.00 0.00 3.67
2060 4537 1.775459 TGGTTAGTGCCTTGGTGGTTA 59.225 47.619 0.00 0.00 38.35 2.85
2521 5015 3.128242 GCTGTTTTGTGCTGCTGATAGAT 59.872 43.478 0.00 0.00 0.00 1.98
2522 5016 4.730035 GCTGTTTTGTGCTGCTGATAGATC 60.730 45.833 0.00 0.00 0.00 2.75
2523 5017 4.325972 TGTTTTGTGCTGCTGATAGATCA 58.674 39.130 0.00 0.00 35.16 2.92
2537 5031 5.941788 TGATAGATCAGGCTAGTACTGTCA 58.058 41.667 5.39 8.66 37.25 3.58
2538 5032 5.765677 TGATAGATCAGGCTAGTACTGTCAC 59.234 44.000 5.39 8.39 37.25 3.67
2539 5033 4.243793 AGATCAGGCTAGTACTGTCACT 57.756 45.455 5.39 9.89 37.25 3.41
2540 5034 4.605183 AGATCAGGCTAGTACTGTCACTT 58.395 43.478 5.39 0.00 37.25 3.16
2541 5035 4.400884 AGATCAGGCTAGTACTGTCACTTG 59.599 45.833 5.39 0.00 37.25 3.16
2542 5036 2.826128 TCAGGCTAGTACTGTCACTTGG 59.174 50.000 5.39 0.00 37.25 3.61
2543 5037 2.563179 CAGGCTAGTACTGTCACTTGGT 59.437 50.000 5.39 0.00 0.00 3.67
2544 5038 3.006967 CAGGCTAGTACTGTCACTTGGTT 59.993 47.826 5.39 0.00 0.00 3.67
2545 5039 3.646637 AGGCTAGTACTGTCACTTGGTTT 59.353 43.478 5.39 0.00 0.00 3.27
2546 5040 3.746492 GGCTAGTACTGTCACTTGGTTTG 59.254 47.826 5.39 0.00 0.00 2.93
2547 5041 3.746492 GCTAGTACTGTCACTTGGTTTGG 59.254 47.826 5.39 0.00 0.00 3.28
2548 5042 2.572290 AGTACTGTCACTTGGTTTGGC 58.428 47.619 0.00 0.00 0.00 4.52
2549 5043 2.172717 AGTACTGTCACTTGGTTTGGCT 59.827 45.455 0.00 0.00 0.00 4.75
2550 5044 1.680338 ACTGTCACTTGGTTTGGCTC 58.320 50.000 0.00 0.00 0.00 4.70
2551 5045 1.064758 ACTGTCACTTGGTTTGGCTCA 60.065 47.619 0.00 0.00 0.00 4.26
2552 5046 2.023673 CTGTCACTTGGTTTGGCTCAA 58.976 47.619 0.00 0.00 0.00 3.02
2553 5047 2.624838 CTGTCACTTGGTTTGGCTCAAT 59.375 45.455 0.00 0.00 0.00 2.57
2554 5048 2.361757 TGTCACTTGGTTTGGCTCAATG 59.638 45.455 0.00 0.00 0.00 2.82
2555 5049 2.362077 GTCACTTGGTTTGGCTCAATGT 59.638 45.455 0.00 0.00 0.00 2.71
2556 5050 3.568007 GTCACTTGGTTTGGCTCAATGTA 59.432 43.478 0.00 0.00 0.00 2.29
2557 5051 4.218417 GTCACTTGGTTTGGCTCAATGTAT 59.782 41.667 0.00 0.00 0.00 2.29
2558 5052 4.218200 TCACTTGGTTTGGCTCAATGTATG 59.782 41.667 0.00 0.00 0.00 2.39
2559 5053 4.218200 CACTTGGTTTGGCTCAATGTATGA 59.782 41.667 0.00 0.00 36.38 2.15
2560 5054 5.018809 ACTTGGTTTGGCTCAATGTATGAT 58.981 37.500 0.00 0.00 37.44 2.45
2561 5055 6.095300 CACTTGGTTTGGCTCAATGTATGATA 59.905 38.462 0.00 0.00 37.44 2.15
2562 5056 6.835488 ACTTGGTTTGGCTCAATGTATGATAT 59.165 34.615 0.00 0.00 37.44 1.63
2563 5057 7.342799 ACTTGGTTTGGCTCAATGTATGATATT 59.657 33.333 0.00 0.00 37.44 1.28
2564 5058 7.658525 TGGTTTGGCTCAATGTATGATATTT 57.341 32.000 0.00 0.00 37.44 1.40
2565 5059 8.076910 TGGTTTGGCTCAATGTATGATATTTT 57.923 30.769 0.00 0.00 37.44 1.82
2566 5060 7.980662 TGGTTTGGCTCAATGTATGATATTTTG 59.019 33.333 0.00 0.00 37.44 2.44
2567 5061 7.439056 GGTTTGGCTCAATGTATGATATTTTGG 59.561 37.037 0.00 0.00 37.44 3.28
2568 5062 7.894753 TTGGCTCAATGTATGATATTTTGGA 57.105 32.000 0.00 0.00 37.44 3.53
2569 5063 8.481492 TTGGCTCAATGTATGATATTTTGGAT 57.519 30.769 0.00 0.00 37.44 3.41
2570 5064 7.888424 TGGCTCAATGTATGATATTTTGGATG 58.112 34.615 0.00 0.00 37.44 3.51
2571 5065 7.724951 TGGCTCAATGTATGATATTTTGGATGA 59.275 33.333 0.00 0.00 37.44 2.92
2572 5066 8.242053 GGCTCAATGTATGATATTTTGGATGAG 58.758 37.037 0.00 0.00 37.44 2.90
2573 5067 9.006839 GCTCAATGTATGATATTTTGGATGAGA 57.993 33.333 0.00 0.00 37.44 3.27
2587 5081 9.857656 ATTTTGGATGAGATATGATTGTGTACT 57.142 29.630 0.00 0.00 0.00 2.73
2588 5082 9.685276 TTTTGGATGAGATATGATTGTGTACTT 57.315 29.630 0.00 0.00 0.00 2.24
2589 5083 9.685276 TTTGGATGAGATATGATTGTGTACTTT 57.315 29.630 0.00 0.00 0.00 2.66
2591 5085 9.987272 TGGATGAGATATGATTGTGTACTTTAG 57.013 33.333 0.00 0.00 0.00 1.85
2592 5086 9.988815 GGATGAGATATGATTGTGTACTTTAGT 57.011 33.333 0.00 0.00 0.00 2.24
2602 5096 9.599866 TGATTGTGTACTTTAGTAATCATGAGG 57.400 33.333 0.09 0.00 31.52 3.86
2603 5097 9.601217 GATTGTGTACTTTAGTAATCATGAGGT 57.399 33.333 0.09 0.00 31.52 3.85
2604 5098 8.771920 TTGTGTACTTTAGTAATCATGAGGTG 57.228 34.615 0.09 0.00 31.52 4.00
2605 5099 8.129496 TGTGTACTTTAGTAATCATGAGGTGA 57.871 34.615 0.09 0.00 42.06 4.02
2607 5101 9.035607 GTGTACTTTAGTAATCATGAGGTGATG 57.964 37.037 0.09 0.00 46.80 3.07
2608 5102 8.758829 TGTACTTTAGTAATCATGAGGTGATGT 58.241 33.333 0.09 0.00 46.80 3.06
2609 5103 9.035607 GTACTTTAGTAATCATGAGGTGATGTG 57.964 37.037 0.09 0.00 46.80 3.21
2610 5104 6.540189 ACTTTAGTAATCATGAGGTGATGTGC 59.460 38.462 0.09 0.00 46.80 4.57
2611 5105 4.492494 AGTAATCATGAGGTGATGTGCA 57.508 40.909 0.09 0.00 46.80 4.57
2612 5106 5.045012 AGTAATCATGAGGTGATGTGCAT 57.955 39.130 0.09 0.00 46.80 3.96
2613 5107 4.820173 AGTAATCATGAGGTGATGTGCATG 59.180 41.667 0.09 0.00 46.80 4.06
2614 5108 2.793288 TCATGAGGTGATGTGCATGT 57.207 45.000 0.00 0.00 39.22 3.21
2615 5109 2.361789 TCATGAGGTGATGTGCATGTG 58.638 47.619 0.00 0.00 39.22 3.21
2616 5110 1.100510 ATGAGGTGATGTGCATGTGC 58.899 50.000 0.00 0.00 42.50 4.57
2631 5125 5.691508 GCATGTGCAGTTCATTGTTATTC 57.308 39.130 0.00 0.00 41.59 1.75
2632 5126 5.404946 GCATGTGCAGTTCATTGTTATTCT 58.595 37.500 0.00 0.00 41.59 2.40
2633 5127 5.865552 GCATGTGCAGTTCATTGTTATTCTT 59.134 36.000 0.00 0.00 41.59 2.52
2634 5128 7.028962 GCATGTGCAGTTCATTGTTATTCTTA 58.971 34.615 0.00 0.00 41.59 2.10
2635 5129 7.541783 GCATGTGCAGTTCATTGTTATTCTTAA 59.458 33.333 0.00 0.00 41.59 1.85
2636 5130 9.409312 CATGTGCAGTTCATTGTTATTCTTAAA 57.591 29.630 0.00 0.00 0.00 1.52
2637 5131 9.979578 ATGTGCAGTTCATTGTTATTCTTAAAA 57.020 25.926 0.00 0.00 0.00 1.52
2638 5132 9.979578 TGTGCAGTTCATTGTTATTCTTAAAAT 57.020 25.926 0.00 0.00 0.00 1.82
2656 5150 8.977505 TCTTAAAATCTGTTGCAAGTATTTTGC 58.022 29.630 23.53 5.00 45.11 3.68
2657 5151 8.885494 TTAAAATCTGTTGCAAGTATTTTGCT 57.115 26.923 23.53 10.36 45.13 3.91
2658 5152 7.412137 AAAATCTGTTGCAAGTATTTTGCTC 57.588 32.000 18.41 6.96 45.13 4.26
2659 5153 5.710513 ATCTGTTGCAAGTATTTTGCTCA 57.289 34.783 0.00 10.36 45.13 4.26
2660 5154 5.710513 TCTGTTGCAAGTATTTTGCTCAT 57.289 34.783 0.00 0.00 45.13 2.90
2661 5155 6.088016 TCTGTTGCAAGTATTTTGCTCATT 57.912 33.333 0.00 0.00 45.13 2.57
2662 5156 6.514947 TCTGTTGCAAGTATTTTGCTCATTT 58.485 32.000 0.00 0.00 45.13 2.32
2663 5157 6.985645 TCTGTTGCAAGTATTTTGCTCATTTT 59.014 30.769 0.00 0.00 45.13 1.82
2664 5158 8.140628 TCTGTTGCAAGTATTTTGCTCATTTTA 58.859 29.630 0.00 0.00 45.13 1.52
2665 5159 8.830201 TGTTGCAAGTATTTTGCTCATTTTAT 57.170 26.923 0.00 0.00 45.13 1.40
2666 5160 9.270640 TGTTGCAAGTATTTTGCTCATTTTATT 57.729 25.926 0.00 0.00 45.13 1.40
2669 5163 9.920133 TGCAAGTATTTTGCTCATTTTATTACA 57.080 25.926 12.45 0.00 45.13 2.41
2673 5167 9.567848 AGTATTTTGCTCATTTTATTACAACGG 57.432 29.630 0.00 0.00 0.00 4.44
2674 5168 7.826260 ATTTTGCTCATTTTATTACAACGGG 57.174 32.000 0.00 0.00 0.00 5.28
2675 5169 5.968528 TTGCTCATTTTATTACAACGGGT 57.031 34.783 0.00 0.00 0.00 5.28
2676 5170 5.303747 TGCTCATTTTATTACAACGGGTG 57.696 39.130 0.00 0.00 0.00 4.61
2677 5171 4.102649 GCTCATTTTATTACAACGGGTGC 58.897 43.478 0.00 0.00 0.00 5.01
2678 5172 4.142469 GCTCATTTTATTACAACGGGTGCT 60.142 41.667 0.00 0.00 0.00 4.40
2679 5173 5.554822 TCATTTTATTACAACGGGTGCTC 57.445 39.130 0.00 0.00 0.00 4.26
2680 5174 5.004448 TCATTTTATTACAACGGGTGCTCA 58.996 37.500 0.00 0.00 0.00 4.26
2681 5175 5.650266 TCATTTTATTACAACGGGTGCTCAT 59.350 36.000 0.00 0.00 0.00 2.90
2682 5176 5.968528 TTTTATTACAACGGGTGCTCATT 57.031 34.783 0.00 0.00 0.00 2.57
2683 5177 5.968528 TTTATTACAACGGGTGCTCATTT 57.031 34.783 0.00 0.00 0.00 2.32
2684 5178 5.968528 TTATTACAACGGGTGCTCATTTT 57.031 34.783 0.00 0.00 0.00 1.82
2685 5179 7.450124 TTTATTACAACGGGTGCTCATTTTA 57.550 32.000 0.00 0.00 0.00 1.52
2686 5180 4.752661 TTACAACGGGTGCTCATTTTAC 57.247 40.909 0.00 0.00 0.00 2.01
2723 5407 3.132467 GGAGTGGGTCTGTAACATACTCC 59.868 52.174 0.00 0.00 46.34 3.85
2724 5408 4.024670 GAGTGGGTCTGTAACATACTCCT 58.975 47.826 0.00 0.00 36.84 3.69
2725 5409 4.024670 AGTGGGTCTGTAACATACTCCTC 58.975 47.826 0.00 0.00 0.00 3.71
2727 5411 3.012502 TGGGTCTGTAACATACTCCTCCT 59.987 47.826 0.00 0.00 0.00 3.69
2728 5412 3.385111 GGGTCTGTAACATACTCCTCCTG 59.615 52.174 0.00 0.00 0.00 3.86
2917 5640 5.820131 TGACATTAACAGCAAGAAACAGTG 58.180 37.500 0.00 0.00 0.00 3.66
2921 5644 7.319646 ACATTAACAGCAAGAAACAGTGAAAA 58.680 30.769 0.00 0.00 0.00 2.29
2926 5649 3.763897 AGCAAGAAACAGTGAAAACCAGT 59.236 39.130 0.00 0.00 0.00 4.00
2930 5653 6.332630 CAAGAAACAGTGAAAACCAGTCATT 58.667 36.000 0.00 0.00 0.00 2.57
3052 5775 6.723298 ATTGGACATGGTTTTAAACTGACA 57.277 33.333 7.79 0.00 0.00 3.58
3076 5799 7.280428 ACAAGAAGCTAGTGATGATTGATTCTG 59.720 37.037 0.00 0.00 34.31 3.02
3148 5871 1.400142 TGTGTTTTGACTGGTTCTGCG 59.600 47.619 0.00 0.00 0.00 5.18
3236 5959 0.598680 GATTCATCGAGACGGCTGGG 60.599 60.000 0.00 0.00 0.00 4.45
3257 5980 1.742268 GACAATGAGGCCTTGCTCTTC 59.258 52.381 6.77 0.00 0.00 2.87
3281 6004 3.084039 GGCCTTGAGTGTGAATGATGAA 58.916 45.455 0.00 0.00 0.00 2.57
3399 6122 0.321653 AGATTCCGTGACTGTTGGCC 60.322 55.000 0.00 0.00 0.00 5.36
3476 6199 6.372981 CGATGATGATATCCTCGATGATCTC 58.627 44.000 6.46 7.66 46.03 2.75
3576 6299 7.270047 TGACCTAATCAACTTCTAAATACCGG 58.730 38.462 0.00 0.00 33.02 5.28
3598 6321 3.744559 GCAAGTTGCGGAGTTCCA 58.255 55.556 12.95 0.00 31.71 3.53
3599 6322 2.257353 GCAAGTTGCGGAGTTCCAT 58.743 52.632 12.95 0.00 31.71 3.41
3729 6455 8.070171 GCTTGTTTATTTGCATACGATGATACT 58.930 33.333 0.00 0.00 0.00 2.12
3735 6461 5.635549 TTGCATACGATGATACTTTGTCG 57.364 39.130 0.00 0.00 39.78 4.35
3740 6466 3.508762 ACGATGATACTTTGTCGTCCAC 58.491 45.455 0.00 0.00 43.01 4.02
3768 6494 4.337836 TGTTCAGTTGATAAGTTGCTGCAA 59.662 37.500 11.69 11.69 0.00 4.08
3776 6502 4.821260 TGATAAGTTGCTGCAAACTTCTCA 59.179 37.500 24.27 24.27 45.10 3.27
3782 6508 2.816087 TGCTGCAAACTTCTCATCTTCC 59.184 45.455 0.00 0.00 0.00 3.46
3783 6509 2.816087 GCTGCAAACTTCTCATCTTCCA 59.184 45.455 0.00 0.00 0.00 3.53
3789 6515 5.218139 CAAACTTCTCATCTTCCAGTTTGC 58.782 41.667 9.47 0.00 44.29 3.68
3790 6516 3.070018 ACTTCTCATCTTCCAGTTTGCG 58.930 45.455 0.00 0.00 0.00 4.85
3791 6517 2.839486 TCTCATCTTCCAGTTTGCGT 57.161 45.000 0.00 0.00 0.00 5.24
3792 6518 3.126001 TCTCATCTTCCAGTTTGCGTT 57.874 42.857 0.00 0.00 0.00 4.84
3793 6519 4.265904 TCTCATCTTCCAGTTTGCGTTA 57.734 40.909 0.00 0.00 0.00 3.18
3794 6520 4.637276 TCTCATCTTCCAGTTTGCGTTAA 58.363 39.130 0.00 0.00 0.00 2.01
3795 6521 5.245531 TCTCATCTTCCAGTTTGCGTTAAT 58.754 37.500 0.00 0.00 0.00 1.40
3798 6524 7.064609 TCTCATCTTCCAGTTTGCGTTAATTAG 59.935 37.037 0.00 0.00 0.00 1.73
3809 6681 2.151924 GCGTTAATTAGGCGTACGTAGC 59.848 50.000 17.90 1.78 34.89 3.58
3814 6686 6.360681 CGTTAATTAGGCGTACGTAGCTATTT 59.639 38.462 17.90 5.37 34.52 1.40
3832 6704 3.698029 TTTGCTTTTCTGTCTGTGCTC 57.302 42.857 0.00 0.00 0.00 4.26
3833 6705 2.330440 TGCTTTTCTGTCTGTGCTCA 57.670 45.000 0.00 0.00 0.00 4.26
3834 6706 1.942657 TGCTTTTCTGTCTGTGCTCAC 59.057 47.619 0.00 0.00 0.00 3.51
3838 6710 2.808523 TTCTGTCTGTGCTCACTCAG 57.191 50.000 1.47 7.54 38.49 3.35
3839 6711 0.964700 TCTGTCTGTGCTCACTCAGG 59.035 55.000 12.42 0.00 37.86 3.86
3840 6712 0.669932 CTGTCTGTGCTCACTCAGGC 60.670 60.000 1.47 0.00 41.34 4.85
3841 6713 1.735920 GTCTGTGCTCACTCAGGCG 60.736 63.158 1.47 0.00 37.86 5.52
3843 6715 1.217511 CTGTGCTCACTCAGGCGAT 59.782 57.895 1.47 0.00 34.46 4.58
3844 6716 0.390866 CTGTGCTCACTCAGGCGATT 60.391 55.000 1.47 0.00 34.46 3.34
3845 6717 0.671472 TGTGCTCACTCAGGCGATTG 60.671 55.000 1.47 0.00 0.00 2.67
3846 6718 1.742880 TGCTCACTCAGGCGATTGC 60.743 57.895 0.00 0.00 41.71 3.56
3847 6719 1.449246 GCTCACTCAGGCGATTGCT 60.449 57.895 4.59 0.00 42.25 3.91
3848 6720 1.023513 GCTCACTCAGGCGATTGCTT 61.024 55.000 4.59 0.00 42.25 3.91
3849 6721 1.740380 GCTCACTCAGGCGATTGCTTA 60.740 52.381 4.59 0.00 42.25 3.09
3850 6722 2.621338 CTCACTCAGGCGATTGCTTAA 58.379 47.619 4.59 0.00 42.25 1.85
3851 6723 2.606725 CTCACTCAGGCGATTGCTTAAG 59.393 50.000 4.59 0.00 42.25 1.85
3852 6724 1.063174 CACTCAGGCGATTGCTTAAGC 59.937 52.381 20.84 20.84 42.25 3.09
3859 6731 1.913317 CGATTGCTTAAGCTTTGGCC 58.087 50.000 26.90 0.00 42.66 5.36
3860 6732 1.202114 CGATTGCTTAAGCTTTGGCCA 59.798 47.619 26.90 0.00 42.66 5.36
3872 6744 2.609002 GCTTTGGCCAAAACAAGTTGAG 59.391 45.455 29.93 16.72 0.00 3.02
3873 6745 2.977772 TTGGCCAAAACAAGTTGAGG 57.022 45.000 17.98 6.93 0.00 3.86
3876 6748 1.269051 GGCCAAAACAAGTTGAGGTCG 60.269 52.381 10.54 0.00 0.00 4.79
3904 6777 7.337480 TGAACCAATCCTGATTAACATCATG 57.663 36.000 0.00 0.00 38.81 3.07
3914 6787 6.016527 CCTGATTAACATCATGATGAACCCAG 60.017 42.308 36.37 29.29 38.81 4.45
3920 6793 5.128205 ACATCATGATGAACCCAGTACATG 58.872 41.667 36.37 11.59 41.20 3.21
3921 6794 4.842531 TCATGATGAACCCAGTACATGT 57.157 40.909 2.69 2.69 35.67 3.21
3922 6795 4.516323 TCATGATGAACCCAGTACATGTG 58.484 43.478 9.11 0.00 35.67 3.21
3923 6796 4.019411 TCATGATGAACCCAGTACATGTGT 60.019 41.667 9.11 0.00 35.67 3.72
3924 6797 3.673902 TGATGAACCCAGTACATGTGTG 58.326 45.455 9.11 5.82 0.00 3.82
3925 6798 2.559698 TGAACCCAGTACATGTGTGG 57.440 50.000 18.10 18.10 0.00 4.17
3926 6799 1.771854 TGAACCCAGTACATGTGTGGT 59.228 47.619 21.50 13.83 0.00 4.16
3927 6800 2.973406 TGAACCCAGTACATGTGTGGTA 59.027 45.455 21.50 7.82 0.00 3.25
3928 6801 3.007506 TGAACCCAGTACATGTGTGGTAG 59.992 47.826 21.50 13.06 0.00 3.18
3929 6802 2.616524 ACCCAGTACATGTGTGGTAGT 58.383 47.619 21.50 13.54 0.00 2.73
3930 6803 2.301870 ACCCAGTACATGTGTGGTAGTG 59.698 50.000 21.50 9.92 40.32 2.74
3932 6805 3.678056 CAGTACATGTGTGGTAGTGGT 57.322 47.619 9.11 0.00 38.12 4.16
3933 6806 3.325870 CAGTACATGTGTGGTAGTGGTG 58.674 50.000 9.11 0.00 38.12 4.17
3936 6809 1.270839 ACATGTGTGGTAGTGGTGCTC 60.271 52.381 0.00 0.00 0.00 4.26
3955 6832 2.302260 TCCTCAATGGAGAGAGTAGCG 58.698 52.381 0.00 0.00 44.26 4.26
3971 6848 6.403878 AGAGTAGCGTACAAAAACATGGTAT 58.596 36.000 0.00 0.00 0.00 2.73
3974 6851 4.328536 AGCGTACAAAAACATGGTATGGA 58.671 39.130 0.00 0.00 33.60 3.41
3979 6856 5.705609 ACAAAAACATGGTATGGACAGAC 57.294 39.130 0.00 0.00 33.60 3.51
3981 6858 5.596361 ACAAAAACATGGTATGGACAGACAA 59.404 36.000 0.00 0.00 33.60 3.18
3982 6859 6.097554 ACAAAAACATGGTATGGACAGACAAA 59.902 34.615 0.00 0.00 33.60 2.83
3983 6860 6.723298 AAAACATGGTATGGACAGACAAAA 57.277 33.333 0.00 0.00 33.60 2.44
3985 6862 4.985538 ACATGGTATGGACAGACAAAACT 58.014 39.130 0.00 0.00 33.60 2.66
3987 6864 5.833131 ACATGGTATGGACAGACAAAACTTT 59.167 36.000 0.00 0.00 33.60 2.66
3988 6865 6.016276 ACATGGTATGGACAGACAAAACTTTC 60.016 38.462 0.00 0.00 33.60 2.62
3989 6866 4.825085 TGGTATGGACAGACAAAACTTTCC 59.175 41.667 0.00 0.00 37.29 3.13
3990 6867 5.070685 GGTATGGACAGACAAAACTTTCCT 58.929 41.667 0.00 0.00 37.56 3.36
3991 6868 5.181433 GGTATGGACAGACAAAACTTTCCTC 59.819 44.000 0.00 0.00 37.56 3.71
3992 6869 3.551846 TGGACAGACAAAACTTTCCTCC 58.448 45.455 0.00 0.00 37.56 4.30
3993 6870 3.202151 TGGACAGACAAAACTTTCCTCCT 59.798 43.478 0.00 0.00 37.56 3.69
3994 6871 3.815962 GGACAGACAAAACTTTCCTCCTC 59.184 47.826 0.00 0.00 34.87 3.71
3995 6872 3.815962 GACAGACAAAACTTTCCTCCTCC 59.184 47.826 0.00 0.00 0.00 4.30
3996 6873 3.202151 ACAGACAAAACTTTCCTCCTCCA 59.798 43.478 0.00 0.00 0.00 3.86
3997 6874 4.141158 ACAGACAAAACTTTCCTCCTCCAT 60.141 41.667 0.00 0.00 0.00 3.41
3998 6875 4.217118 CAGACAAAACTTTCCTCCTCCATG 59.783 45.833 0.00 0.00 0.00 3.66
3999 6876 2.893489 ACAAAACTTTCCTCCTCCATGC 59.107 45.455 0.00 0.00 0.00 4.06
4000 6877 2.222227 AAACTTTCCTCCTCCATGCC 57.778 50.000 0.00 0.00 0.00 4.40
4001 6878 1.376649 AACTTTCCTCCTCCATGCCT 58.623 50.000 0.00 0.00 0.00 4.75
4002 6879 0.915364 ACTTTCCTCCTCCATGCCTC 59.085 55.000 0.00 0.00 0.00 4.70
4003 6880 0.914644 CTTTCCTCCTCCATGCCTCA 59.085 55.000 0.00 0.00 0.00 3.86
4004 6881 0.620556 TTTCCTCCTCCATGCCTCAC 59.379 55.000 0.00 0.00 0.00 3.51
4005 6882 0.252881 TTCCTCCTCCATGCCTCACT 60.253 55.000 0.00 0.00 0.00 3.41
4006 6883 0.636647 TCCTCCTCCATGCCTCACTA 59.363 55.000 0.00 0.00 0.00 2.74
4007 6884 1.008327 TCCTCCTCCATGCCTCACTAA 59.992 52.381 0.00 0.00 0.00 2.24
4008 6885 1.139853 CCTCCTCCATGCCTCACTAAC 59.860 57.143 0.00 0.00 0.00 2.34
4009 6886 1.833630 CTCCTCCATGCCTCACTAACA 59.166 52.381 0.00 0.00 0.00 2.41
4010 6887 1.833630 TCCTCCATGCCTCACTAACAG 59.166 52.381 0.00 0.00 0.00 3.16
4011 6888 1.661341 CTCCATGCCTCACTAACAGC 58.339 55.000 0.00 0.00 0.00 4.40
4012 6889 0.253044 TCCATGCCTCACTAACAGCC 59.747 55.000 0.00 0.00 0.00 4.85
4013 6890 0.035152 CCATGCCTCACTAACAGCCA 60.035 55.000 0.00 0.00 0.00 4.75
4014 6891 1.089920 CATGCCTCACTAACAGCCAC 58.910 55.000 0.00 0.00 0.00 5.01
4015 6892 0.692476 ATGCCTCACTAACAGCCACA 59.308 50.000 0.00 0.00 0.00 4.17
4016 6893 0.035317 TGCCTCACTAACAGCCACAG 59.965 55.000 0.00 0.00 0.00 3.66
4017 6894 0.674895 GCCTCACTAACAGCCACAGG 60.675 60.000 0.00 0.00 0.00 4.00
4027 6904 4.110493 GCCACAGGCGATACACTC 57.890 61.111 0.00 0.00 39.62 3.51
4028 6905 1.521681 GCCACAGGCGATACACTCC 60.522 63.158 0.00 0.00 39.62 3.85
4029 6906 1.226974 CCACAGGCGATACACTCCG 60.227 63.158 0.00 0.00 0.00 4.63
4047 6924 2.159338 TCCGCGTGGTACTACAATCTTC 60.159 50.000 16.01 0.00 36.30 2.87
4060 6937 8.999431 GTACTACAATCTTCCAAATGACAAAGA 58.001 33.333 0.00 0.00 32.69 2.52
4061 6938 8.463930 ACTACAATCTTCCAAATGACAAAGAA 57.536 30.769 0.00 0.00 31.98 2.52
4065 6942 3.253188 TCTTCCAAATGACAAAGAAGGCG 59.747 43.478 0.00 0.00 35.68 5.52
4091 7027 5.376625 ACATGTATATCTTGGAATTGCCGT 58.623 37.500 0.00 0.00 40.66 5.68
4097 7033 1.644786 CTTGGAATTGCCGTCCGTCC 61.645 60.000 0.00 0.00 40.66 4.79
4116 7052 4.475944 GTCCAAAAATGACGTCTTGGATG 58.524 43.478 29.05 17.64 46.69 3.51
4117 7053 4.023193 GTCCAAAAATGACGTCTTGGATGT 60.023 41.667 29.05 5.53 46.69 3.06
4118 7054 5.180492 GTCCAAAAATGACGTCTTGGATGTA 59.820 40.000 29.05 12.54 46.69 2.29
4122 7058 7.094975 CCAAAAATGACGTCTTGGATGTAGTAA 60.095 37.037 23.18 0.00 40.72 2.24
4157 7098 4.131088 GTGACGGGGGAGACGAGC 62.131 72.222 0.00 0.00 34.93 5.03
4196 7137 2.028130 CTCAGTATCTTCCCTGACGCT 58.972 52.381 0.00 0.00 34.20 5.07
4273 7214 4.749598 CACCTGAAAATTGGCAAACTAACC 59.250 41.667 3.01 0.00 0.00 2.85
4277 7218 3.378911 AAATTGGCAAACTAACCGTGG 57.621 42.857 3.01 0.00 0.00 4.94
4302 7243 1.621301 GATGGCCGATCGATTCAGCG 61.621 60.000 18.66 0.00 0.00 5.18
4383 7324 3.187699 CTCCTCGGCGATGTCGGAG 62.188 68.421 23.09 23.09 40.23 4.63
4453 7394 1.134610 CCTTTTGCCTGCCATCCATTC 60.135 52.381 0.00 0.00 0.00 2.67
4454 7395 1.551430 CTTTTGCCTGCCATCCATTCA 59.449 47.619 0.00 0.00 0.00 2.57
4455 7396 1.868713 TTTGCCTGCCATCCATTCAT 58.131 45.000 0.00 0.00 0.00 2.57
4456 7397 1.868713 TTGCCTGCCATCCATTCATT 58.131 45.000 0.00 0.00 0.00 2.57
4480 7421 1.351683 ACGCACCCAGTTTATTACCCA 59.648 47.619 0.00 0.00 0.00 4.51
4482 7423 2.375146 GCACCCAGTTTATTACCCAGG 58.625 52.381 0.00 0.00 0.00 4.45
4500 7441 1.625818 AGGCCAGTTCGATCTTGTTCT 59.374 47.619 5.01 0.00 0.00 3.01
4504 7445 3.498397 GCCAGTTCGATCTTGTTCTTGAA 59.502 43.478 0.00 0.00 0.00 2.69
4521 7462 5.610398 TCTTGAAGCTGAACAAGTGATGTA 58.390 37.500 20.21 5.45 42.99 2.29
4522 7463 5.466728 TCTTGAAGCTGAACAAGTGATGTAC 59.533 40.000 20.21 0.00 42.99 2.90
4523 7464 4.960938 TGAAGCTGAACAAGTGATGTACT 58.039 39.130 0.00 0.00 42.99 2.73
4537 7478 8.539770 AAGTGATGTACTTGAAGACATTACTG 57.460 34.615 22.59 0.00 46.38 2.74
4538 7479 7.896811 AGTGATGTACTTGAAGACATTACTGA 58.103 34.615 21.89 0.00 45.75 3.41
4539 7480 8.031864 AGTGATGTACTTGAAGACATTACTGAG 58.968 37.037 21.89 0.00 45.75 3.35
4540 7481 8.029522 GTGATGTACTTGAAGACATTACTGAGA 58.970 37.037 17.12 0.00 38.71 3.27
4541 7482 8.753133 TGATGTACTTGAAGACATTACTGAGAT 58.247 33.333 0.00 0.00 36.42 2.75
4542 7483 8.939201 ATGTACTTGAAGACATTACTGAGATG 57.061 34.615 0.00 0.00 32.27 2.90
4543 7484 8.122472 TGTACTTGAAGACATTACTGAGATGA 57.878 34.615 0.00 0.00 0.00 2.92
4544 7485 8.753133 TGTACTTGAAGACATTACTGAGATGAT 58.247 33.333 0.00 0.00 0.00 2.45
4547 7488 8.976353 ACTTGAAGACATTACTGAGATGATAGT 58.024 33.333 0.00 0.00 0.00 2.12
4548 7489 9.814899 CTTGAAGACATTACTGAGATGATAGTT 57.185 33.333 0.00 0.00 0.00 2.24
4549 7490 9.591792 TTGAAGACATTACTGAGATGATAGTTG 57.408 33.333 0.00 0.00 0.00 3.16
4550 7491 8.753133 TGAAGACATTACTGAGATGATAGTTGT 58.247 33.333 0.00 0.00 0.00 3.32
4551 7492 9.243637 GAAGACATTACTGAGATGATAGTTGTC 57.756 37.037 0.00 0.00 36.01 3.18
4552 7493 8.532186 AGACATTACTGAGATGATAGTTGTCT 57.468 34.615 0.00 0.00 38.88 3.41
4553 7494 8.976353 AGACATTACTGAGATGATAGTTGTCTT 58.024 33.333 0.00 0.00 39.87 3.01
4556 7497 9.175060 CATTACTGAGATGATAGTTGTCTTACG 57.825 37.037 0.00 0.00 0.00 3.18
4557 7498 6.137794 ACTGAGATGATAGTTGTCTTACGG 57.862 41.667 0.00 0.00 0.00 4.02
4558 7499 5.067936 ACTGAGATGATAGTTGTCTTACGGG 59.932 44.000 0.00 0.00 0.00 5.28
4559 7500 5.198207 TGAGATGATAGTTGTCTTACGGGA 58.802 41.667 0.00 0.00 0.00 5.14
4560 7501 5.067413 TGAGATGATAGTTGTCTTACGGGAC 59.933 44.000 0.00 0.00 36.81 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.722295 CGGTGTCCGCGCATGTTT 61.722 61.111 8.75 0.00 41.17 2.83
80 81 0.171007 CATTGAAACGGCTTGCCGAT 59.829 50.000 35.96 24.38 36.94 4.18
81 82 1.578926 CATTGAAACGGCTTGCCGA 59.421 52.632 35.96 16.86 36.94 5.54
92 93 6.995364 TCTTTCATTGATGAAGGCATTGAAA 58.005 32.000 10.07 0.00 46.34 2.69
99 100 5.571784 TGTGATCTTTCATTGATGAAGGC 57.428 39.130 10.07 0.55 46.34 4.35
102 103 6.602009 AGCAGATGTGATCTTTCATTGATGAA 59.398 34.615 2.39 2.39 44.42 2.57
103 104 6.120220 AGCAGATGTGATCTTTCATTGATGA 58.880 36.000 0.00 0.00 37.58 2.92
130 132 3.487202 CCACATTGACGCCGACGG 61.487 66.667 10.29 10.29 46.04 4.79
145 147 0.818296 GCTCTAGAGCGGAAACTCCA 59.182 55.000 28.04 0.00 45.29 3.86
146 148 3.652292 GCTCTAGAGCGGAAACTCC 57.348 57.895 28.04 0.70 45.29 3.85
191 193 5.389859 TTCTCATTCGCACCATTTTTCAT 57.610 34.783 0.00 0.00 0.00 2.57
202 204 2.859165 AACCCTCTTTCTCATTCGCA 57.141 45.000 0.00 0.00 0.00 5.10
212 214 1.744320 GCCCGTGCAAAACCCTCTTT 61.744 55.000 0.00 0.00 37.47 2.52
227 229 2.016961 CTTCGACAATCATGGCCCG 58.983 57.895 0.00 0.00 0.00 6.13
229 231 1.353103 CGCTTCGACAATCATGGCC 59.647 57.895 0.00 0.00 0.00 5.36
247 249 3.788766 GACCGATGCCACGCACAC 61.789 66.667 0.00 0.00 43.04 3.82
271 273 1.756430 GGGGAGAGACATTTTGCTCC 58.244 55.000 0.00 0.00 44.84 4.70
280 282 2.747686 GCAAACCGGGGAGAGACA 59.252 61.111 6.32 0.00 0.00 3.41
350 357 1.481871 CACGGTAGTACTCCACCCAT 58.518 55.000 8.90 0.00 0.00 4.00
358 365 3.671008 TTGTTCATGCACGGTAGTACT 57.329 42.857 0.00 0.00 0.00 2.73
359 366 4.201783 GGATTTGTTCATGCACGGTAGTAC 60.202 45.833 0.00 0.00 0.00 2.73
390 1442 5.815740 ACTTGGTACTGATAAAGCGTTATGG 59.184 40.000 9.74 5.27 29.69 2.74
397 1449 6.311690 GTCTTCTGACTTGGTACTGATAAAGC 59.688 42.308 0.00 0.00 39.94 3.51
527 1581 3.327626 GAGTCGTCTTTTCCTTCCTTCC 58.672 50.000 0.00 0.00 0.00 3.46
528 1582 3.007074 AGGAGTCGTCTTTTCCTTCCTTC 59.993 47.826 0.00 0.00 38.13 3.46
529 1583 2.973406 AGGAGTCGTCTTTTCCTTCCTT 59.027 45.455 0.00 0.00 38.13 3.36
530 1584 2.563620 GAGGAGTCGTCTTTTCCTTCCT 59.436 50.000 5.58 0.00 41.32 3.36
571 1625 3.225798 GCCAAGTGCCAAGTGCCA 61.226 61.111 0.00 0.00 40.16 4.92
572 1626 3.216944 CTGCCAAGTGCCAAGTGCC 62.217 63.158 0.00 0.00 40.16 5.01
573 1627 2.337532 CTGCCAAGTGCCAAGTGC 59.662 61.111 0.00 0.00 40.16 4.40
574 1628 2.337532 GCTGCCAAGTGCCAAGTG 59.662 61.111 0.00 0.00 40.16 3.16
575 1629 3.289834 CGCTGCCAAGTGCCAAGT 61.290 61.111 0.00 0.00 40.16 3.16
576 1630 4.047059 CCGCTGCCAAGTGCCAAG 62.047 66.667 0.00 0.00 40.16 3.61
608 1662 0.036875 AGGTCTCCTTCGGCTTTTGG 59.963 55.000 0.00 0.00 0.00 3.28
656 1718 4.639171 GCCCCGCGTGGTTTGTTG 62.639 66.667 15.14 0.00 0.00 3.33
680 1742 1.977594 GCGTGGTGGCGTAGATTTGG 61.978 60.000 0.00 0.00 0.00 3.28
860 1922 4.345854 AGAGTTGTTAGTAGACCAGAGGG 58.654 47.826 0.00 0.00 41.29 4.30
906 1993 3.420799 CGAACGAACGAACGAGCAATTTA 60.421 43.478 11.97 0.00 37.03 1.40
987 2085 0.179156 CGCTCATTTTCGCTGCCAAT 60.179 50.000 0.00 0.00 0.00 3.16
1254 2355 1.502163 GCTTCTTGATCCCGCGGATG 61.502 60.000 30.73 11.63 43.27 3.51
1458 2559 0.549950 CACCAGATTCTCCCCATGCT 59.450 55.000 0.00 0.00 0.00 3.79
1617 2718 4.079253 GGTTGGAAAATTAGCCTCACTGA 58.921 43.478 0.00 0.00 0.00 3.41
1661 2762 7.359598 CGAAAGCCTATTTTGAGGAGATTATCG 60.360 40.741 0.00 0.00 39.15 2.92
1698 2799 7.865706 ACAGAGATTATCGTGGCTTTATTTT 57.134 32.000 3.38 0.00 0.00 1.82
1722 2823 3.030291 CCTTGCTTACATAATGGGGCAA 58.970 45.455 0.00 0.00 37.92 4.52
1774 2876 1.881324 TGCTAACGGCTAAAACAACCC 59.119 47.619 0.00 0.00 42.39 4.11
1902 4159 7.554118 ACCAAATATACTGAGTGATTCACAAGG 59.446 37.037 18.57 9.74 36.74 3.61
1908 4165 7.095439 GCTGCTACCAAATATACTGAGTGATTC 60.095 40.741 0.00 0.00 0.00 2.52
1916 4198 5.514279 GCAAAGCTGCTACCAAATATACTG 58.486 41.667 0.90 0.00 45.74 2.74
1935 4380 3.067461 AGCACAACTGAATAAACGGCAAA 59.933 39.130 0.00 0.00 0.00 3.68
2027 4472 3.071479 CACTAACCATTACCAACGCACT 58.929 45.455 0.00 0.00 0.00 4.40
2028 4473 2.413634 GCACTAACCATTACCAACGCAC 60.414 50.000 0.00 0.00 0.00 5.34
2030 4475 1.131693 GGCACTAACCATTACCAACGC 59.868 52.381 0.00 0.00 0.00 4.84
2032 4477 3.192633 CCAAGGCACTAACCATTACCAAC 59.807 47.826 0.00 0.00 38.49 3.77
2037 4514 2.377193 ACCACCAAGGCACTAACCATTA 59.623 45.455 0.00 0.00 43.14 1.90
2425 4911 7.168302 CCGATCTCACACATAGAAACTGTTATC 59.832 40.741 0.00 0.00 0.00 1.75
2426 4912 6.980978 CCGATCTCACACATAGAAACTGTTAT 59.019 38.462 0.00 0.00 0.00 1.89
2427 4913 6.071560 ACCGATCTCACACATAGAAACTGTTA 60.072 38.462 0.00 0.00 0.00 2.41
2429 4915 4.220821 ACCGATCTCACACATAGAAACTGT 59.779 41.667 0.00 0.00 0.00 3.55
2430 4916 4.748892 ACCGATCTCACACATAGAAACTG 58.251 43.478 0.00 0.00 0.00 3.16
2431 4917 5.407407 AACCGATCTCACACATAGAAACT 57.593 39.130 0.00 0.00 0.00 2.66
2475 4969 8.682710 AGCAACAAGTACAGAAAGAAATTGTTA 58.317 29.630 0.00 0.00 37.31 2.41
2521 5015 2.826128 CCAAGTGACAGTACTAGCCTGA 59.174 50.000 15.00 0.00 34.04 3.86
2522 5016 2.563179 ACCAAGTGACAGTACTAGCCTG 59.437 50.000 0.00 8.15 36.01 4.85
2523 5017 2.890814 ACCAAGTGACAGTACTAGCCT 58.109 47.619 0.00 0.00 0.00 4.58
2524 5018 3.679824 AACCAAGTGACAGTACTAGCC 57.320 47.619 0.00 0.00 0.00 3.93
2525 5019 3.746492 CCAAACCAAGTGACAGTACTAGC 59.254 47.826 0.00 0.00 0.00 3.42
2526 5020 3.746492 GCCAAACCAAGTGACAGTACTAG 59.254 47.826 0.00 0.00 0.00 2.57
2527 5021 3.389983 AGCCAAACCAAGTGACAGTACTA 59.610 43.478 0.00 0.00 0.00 1.82
2528 5022 2.172717 AGCCAAACCAAGTGACAGTACT 59.827 45.455 0.00 0.00 0.00 2.73
2529 5023 2.548480 GAGCCAAACCAAGTGACAGTAC 59.452 50.000 0.00 0.00 0.00 2.73
2530 5024 2.171659 TGAGCCAAACCAAGTGACAGTA 59.828 45.455 0.00 0.00 0.00 2.74
2531 5025 1.064758 TGAGCCAAACCAAGTGACAGT 60.065 47.619 0.00 0.00 0.00 3.55
2532 5026 1.679139 TGAGCCAAACCAAGTGACAG 58.321 50.000 0.00 0.00 0.00 3.51
2533 5027 2.136298 TTGAGCCAAACCAAGTGACA 57.864 45.000 0.00 0.00 0.00 3.58
2534 5028 2.362077 ACATTGAGCCAAACCAAGTGAC 59.638 45.455 0.00 0.00 0.00 3.67
2535 5029 2.665165 ACATTGAGCCAAACCAAGTGA 58.335 42.857 0.00 0.00 0.00 3.41
2536 5030 4.218200 TCATACATTGAGCCAAACCAAGTG 59.782 41.667 0.00 0.00 0.00 3.16
2537 5031 4.406456 TCATACATTGAGCCAAACCAAGT 58.594 39.130 0.00 0.00 0.00 3.16
2538 5032 5.587388 ATCATACATTGAGCCAAACCAAG 57.413 39.130 0.00 0.00 37.89 3.61
2539 5033 7.658525 AATATCATACATTGAGCCAAACCAA 57.341 32.000 0.00 0.00 37.89 3.67
2540 5034 7.658525 AAATATCATACATTGAGCCAAACCA 57.341 32.000 0.00 0.00 37.89 3.67
2541 5035 7.439056 CCAAAATATCATACATTGAGCCAAACC 59.561 37.037 0.00 0.00 37.89 3.27
2542 5036 8.196771 TCCAAAATATCATACATTGAGCCAAAC 58.803 33.333 0.00 0.00 37.89 2.93
2543 5037 8.303780 TCCAAAATATCATACATTGAGCCAAA 57.696 30.769 0.00 0.00 37.89 3.28
2544 5038 7.894753 TCCAAAATATCATACATTGAGCCAA 57.105 32.000 0.00 0.00 37.89 4.52
2545 5039 7.724951 TCATCCAAAATATCATACATTGAGCCA 59.275 33.333 0.00 0.00 37.89 4.75
2546 5040 8.114331 TCATCCAAAATATCATACATTGAGCC 57.886 34.615 0.00 0.00 37.89 4.70
2547 5041 9.006839 TCTCATCCAAAATATCATACATTGAGC 57.993 33.333 0.00 0.00 37.89 4.26
2561 5055 9.857656 AGTACACAATCATATCTCATCCAAAAT 57.142 29.630 0.00 0.00 0.00 1.82
2562 5056 9.685276 AAGTACACAATCATATCTCATCCAAAA 57.315 29.630 0.00 0.00 0.00 2.44
2563 5057 9.685276 AAAGTACACAATCATATCTCATCCAAA 57.315 29.630 0.00 0.00 0.00 3.28
2565 5059 9.987272 CTAAAGTACACAATCATATCTCATCCA 57.013 33.333 0.00 0.00 0.00 3.41
2566 5060 9.988815 ACTAAAGTACACAATCATATCTCATCC 57.011 33.333 0.00 0.00 0.00 3.51
2576 5070 9.599866 CCTCATGATTACTAAAGTACACAATCA 57.400 33.333 0.00 7.95 35.23 2.57
2577 5071 9.601217 ACCTCATGATTACTAAAGTACACAATC 57.399 33.333 0.00 0.00 0.00 2.67
2578 5072 9.383519 CACCTCATGATTACTAAAGTACACAAT 57.616 33.333 0.00 0.00 0.00 2.71
2579 5073 8.590204 TCACCTCATGATTACTAAAGTACACAA 58.410 33.333 0.00 0.00 29.99 3.33
2580 5074 8.129496 TCACCTCATGATTACTAAAGTACACA 57.871 34.615 0.00 0.00 29.99 3.72
2581 5075 9.035607 CATCACCTCATGATTACTAAAGTACAC 57.964 37.037 0.00 0.00 46.54 2.90
2582 5076 8.758829 ACATCACCTCATGATTACTAAAGTACA 58.241 33.333 0.00 0.00 46.54 2.90
2583 5077 9.035607 CACATCACCTCATGATTACTAAAGTAC 57.964 37.037 0.00 0.00 46.54 2.73
2584 5078 7.710907 GCACATCACCTCATGATTACTAAAGTA 59.289 37.037 0.00 0.00 46.54 2.24
2585 5079 6.540189 GCACATCACCTCATGATTACTAAAGT 59.460 38.462 0.00 0.00 46.54 2.66
2586 5080 6.539826 TGCACATCACCTCATGATTACTAAAG 59.460 38.462 0.00 0.00 46.54 1.85
2587 5081 6.413892 TGCACATCACCTCATGATTACTAAA 58.586 36.000 0.00 0.00 46.54 1.85
2588 5082 5.988287 TGCACATCACCTCATGATTACTAA 58.012 37.500 0.00 0.00 46.54 2.24
2589 5083 5.612725 TGCACATCACCTCATGATTACTA 57.387 39.130 0.00 0.00 46.54 1.82
2590 5084 4.492494 TGCACATCACCTCATGATTACT 57.508 40.909 0.00 0.00 46.54 2.24
2591 5085 4.577693 ACATGCACATCACCTCATGATTAC 59.422 41.667 0.00 0.00 46.54 1.89
2592 5086 4.577283 CACATGCACATCACCTCATGATTA 59.423 41.667 0.00 0.00 46.54 1.75
2593 5087 3.380320 CACATGCACATCACCTCATGATT 59.620 43.478 0.00 0.00 46.54 2.57
2594 5088 4.797785 GCACATGCACATCACCTCATGAT 61.798 47.826 0.00 0.00 44.33 2.45
2595 5089 2.361789 CACATGCACATCACCTCATGA 58.638 47.619 7.90 0.00 43.13 3.07
2596 5090 1.202256 GCACATGCACATCACCTCATG 60.202 52.381 0.00 0.00 41.35 3.07
2597 5091 1.100510 GCACATGCACATCACCTCAT 58.899 50.000 0.00 0.00 41.59 2.90
2598 5092 2.558617 GCACATGCACATCACCTCA 58.441 52.632 0.00 0.00 41.59 3.86
2609 5103 5.404946 AGAATAACAATGAACTGCACATGC 58.595 37.500 0.00 0.00 42.50 4.06
2610 5104 8.969121 TTAAGAATAACAATGAACTGCACATG 57.031 30.769 0.00 0.00 0.00 3.21
2611 5105 9.979578 TTTTAAGAATAACAATGAACTGCACAT 57.020 25.926 0.00 0.00 0.00 3.21
2612 5106 9.979578 ATTTTAAGAATAACAATGAACTGCACA 57.020 25.926 0.00 0.00 0.00 4.57
2630 5124 8.977505 GCAAAATACTTGCAACAGATTTTAAGA 58.022 29.630 15.56 0.00 44.34 2.10
2647 5141 9.567848 CCGTTGTAATAAAATGAGCAAAATACT 57.432 29.630 0.00 0.00 0.00 2.12
2648 5142 8.803799 CCCGTTGTAATAAAATGAGCAAAATAC 58.196 33.333 0.00 0.00 0.00 1.89
2649 5143 8.524487 ACCCGTTGTAATAAAATGAGCAAAATA 58.476 29.630 0.00 0.00 0.00 1.40
2650 5144 7.330700 CACCCGTTGTAATAAAATGAGCAAAAT 59.669 33.333 0.00 0.00 0.00 1.82
2651 5145 6.642950 CACCCGTTGTAATAAAATGAGCAAAA 59.357 34.615 0.00 0.00 0.00 2.44
2652 5146 6.153067 CACCCGTTGTAATAAAATGAGCAAA 58.847 36.000 0.00 0.00 0.00 3.68
2653 5147 5.704888 CACCCGTTGTAATAAAATGAGCAA 58.295 37.500 0.00 0.00 0.00 3.91
2654 5148 4.380023 GCACCCGTTGTAATAAAATGAGCA 60.380 41.667 0.00 0.00 0.00 4.26
2655 5149 4.102649 GCACCCGTTGTAATAAAATGAGC 58.897 43.478 0.00 0.00 0.00 4.26
2656 5150 5.123186 TGAGCACCCGTTGTAATAAAATGAG 59.877 40.000 0.00 0.00 0.00 2.90
2657 5151 5.004448 TGAGCACCCGTTGTAATAAAATGA 58.996 37.500 0.00 0.00 0.00 2.57
2658 5152 5.303747 TGAGCACCCGTTGTAATAAAATG 57.696 39.130 0.00 0.00 0.00 2.32
2659 5153 6.524101 AATGAGCACCCGTTGTAATAAAAT 57.476 33.333 0.00 0.00 0.00 1.82
2660 5154 5.968528 AATGAGCACCCGTTGTAATAAAA 57.031 34.783 0.00 0.00 0.00 1.52
2661 5155 5.968528 AAATGAGCACCCGTTGTAATAAA 57.031 34.783 0.00 0.00 0.00 1.40
2662 5156 5.968528 AAAATGAGCACCCGTTGTAATAA 57.031 34.783 0.00 0.00 0.00 1.40
2663 5157 6.174760 AGTAAAATGAGCACCCGTTGTAATA 58.825 36.000 0.00 0.00 0.00 0.98
2664 5158 5.007682 AGTAAAATGAGCACCCGTTGTAAT 58.992 37.500 0.00 0.00 0.00 1.89
2665 5159 4.391155 AGTAAAATGAGCACCCGTTGTAA 58.609 39.130 0.00 0.00 0.00 2.41
2666 5160 3.998341 GAGTAAAATGAGCACCCGTTGTA 59.002 43.478 0.00 0.00 0.00 2.41
2667 5161 2.812011 GAGTAAAATGAGCACCCGTTGT 59.188 45.455 0.00 0.00 0.00 3.32
2668 5162 3.074412 AGAGTAAAATGAGCACCCGTTG 58.926 45.455 0.00 0.00 0.00 4.10
2669 5163 3.074412 CAGAGTAAAATGAGCACCCGTT 58.926 45.455 0.00 0.00 0.00 4.44
2670 5164 2.038557 ACAGAGTAAAATGAGCACCCGT 59.961 45.455 0.00 0.00 0.00 5.28
2671 5165 2.699954 ACAGAGTAAAATGAGCACCCG 58.300 47.619 0.00 0.00 0.00 5.28
2672 5166 3.821033 ACAACAGAGTAAAATGAGCACCC 59.179 43.478 0.00 0.00 0.00 4.61
2673 5167 4.083271 GGACAACAGAGTAAAATGAGCACC 60.083 45.833 0.00 0.00 0.00 5.01
2674 5168 4.757149 AGGACAACAGAGTAAAATGAGCAC 59.243 41.667 0.00 0.00 0.00 4.40
2675 5169 4.756642 CAGGACAACAGAGTAAAATGAGCA 59.243 41.667 0.00 0.00 0.00 4.26
2676 5170 4.997395 TCAGGACAACAGAGTAAAATGAGC 59.003 41.667 0.00 0.00 0.00 4.26
2677 5171 6.093219 CCATCAGGACAACAGAGTAAAATGAG 59.907 42.308 0.00 0.00 36.89 2.90
2678 5172 5.939883 CCATCAGGACAACAGAGTAAAATGA 59.060 40.000 0.00 0.00 36.89 2.57
2679 5173 5.939883 TCCATCAGGACAACAGAGTAAAATG 59.060 40.000 0.00 0.00 39.61 2.32
2680 5174 6.126863 TCCATCAGGACAACAGAGTAAAAT 57.873 37.500 0.00 0.00 39.61 1.82
2681 5175 5.071788 ACTCCATCAGGACAACAGAGTAAAA 59.928 40.000 0.00 0.00 39.61 1.52
2682 5176 4.593206 ACTCCATCAGGACAACAGAGTAAA 59.407 41.667 0.00 0.00 39.61 2.01
2683 5177 4.021104 CACTCCATCAGGACAACAGAGTAA 60.021 45.833 0.00 0.00 39.61 2.24
2684 5178 3.511540 CACTCCATCAGGACAACAGAGTA 59.488 47.826 0.00 0.00 39.61 2.59
2685 5179 2.301296 CACTCCATCAGGACAACAGAGT 59.699 50.000 0.00 0.00 39.61 3.24
2686 5180 2.354503 CCACTCCATCAGGACAACAGAG 60.355 54.545 0.00 0.00 39.61 3.35
2770 5454 3.828451 CCCTCCGTTCCTAAATCCGTATA 59.172 47.826 0.00 0.00 0.00 1.47
2773 5457 0.828677 CCCTCCGTTCCTAAATCCGT 59.171 55.000 0.00 0.00 0.00 4.69
2774 5458 1.068741 CTCCCTCCGTTCCTAAATCCG 59.931 57.143 0.00 0.00 0.00 4.18
2775 5459 2.117051 ACTCCCTCCGTTCCTAAATCC 58.883 52.381 0.00 0.00 0.00 3.01
3052 5775 7.337167 ACAGAATCAATCATCACTAGCTTCTT 58.663 34.615 0.00 0.00 0.00 2.52
3148 5871 4.894784 TGTTAAGTCATCCTGTGGAAGTC 58.105 43.478 0.00 0.00 34.34 3.01
3236 5959 0.034670 AGAGCAAGGCCTCATTGTCC 60.035 55.000 5.23 0.00 34.26 4.02
3257 5980 1.081892 CATTCACACTCAAGGCCTCG 58.918 55.000 5.23 0.00 0.00 4.63
3281 6004 4.640771 TTTGGATAGCACTTTCAGGACT 57.359 40.909 0.00 0.00 0.00 3.85
3329 6052 1.731613 CTGTTCTGTACGCGCCGAA 60.732 57.895 5.73 0.34 0.00 4.30
3399 6122 0.179026 CTGACCAGGGCATCCTCATG 60.179 60.000 0.00 0.00 42.67 3.07
3435 6158 2.437359 GCCGCCTGACATTGCTCT 60.437 61.111 0.00 0.00 0.00 4.09
3476 6199 6.348295 CCTTCTTGCCAAATATCATCTCATCG 60.348 42.308 0.00 0.00 0.00 3.84
3576 6299 3.741476 CTCCGCAACTTGCTGGGC 61.741 66.667 18.51 0.00 42.25 5.36
3598 6321 4.965814 CAGACATGCTGTGTATCCCTAAT 58.034 43.478 8.46 0.00 42.36 1.73
3599 6322 4.406648 CAGACATGCTGTGTATCCCTAA 57.593 45.455 8.46 0.00 42.36 2.69
3625 6348 6.311445 ACAGACATCGTTCAGCAGTATAAAAG 59.689 38.462 0.00 0.00 0.00 2.27
3729 6455 3.075148 TGAACAAACTGTGGACGACAAA 58.925 40.909 0.00 0.00 32.80 2.83
3735 6461 4.900635 ATCAACTGAACAAACTGTGGAC 57.099 40.909 0.00 0.00 0.00 4.02
3740 6466 6.415867 CAGCAACTTATCAACTGAACAAACTG 59.584 38.462 0.00 0.00 0.00 3.16
3768 6494 3.499918 CGCAAACTGGAAGATGAGAAGTT 59.500 43.478 0.00 0.00 37.43 2.66
3776 6502 5.163652 GCCTAATTAACGCAAACTGGAAGAT 60.164 40.000 0.42 0.00 37.43 2.40
3782 6508 3.465122 ACGCCTAATTAACGCAAACTG 57.535 42.857 7.31 0.00 0.00 3.16
3783 6509 3.061161 CGTACGCCTAATTAACGCAAACT 59.939 43.478 0.52 0.00 0.00 2.66
3788 6514 2.151924 GCTACGTACGCCTAATTAACGC 59.848 50.000 16.72 1.25 37.07 4.84
3789 6515 3.621794 AGCTACGTACGCCTAATTAACG 58.378 45.455 16.72 5.35 39.37 3.18
3790 6516 7.496584 CAAATAGCTACGTACGCCTAATTAAC 58.503 38.462 16.72 0.00 0.00 2.01
3791 6517 6.144402 GCAAATAGCTACGTACGCCTAATTAA 59.856 38.462 16.72 0.00 41.15 1.40
3792 6518 5.630680 GCAAATAGCTACGTACGCCTAATTA 59.369 40.000 16.72 1.31 41.15 1.40
3793 6519 4.446719 GCAAATAGCTACGTACGCCTAATT 59.553 41.667 16.72 9.93 41.15 1.40
3794 6520 3.985925 GCAAATAGCTACGTACGCCTAAT 59.014 43.478 16.72 4.19 41.15 1.73
3795 6521 3.374745 GCAAATAGCTACGTACGCCTAA 58.625 45.455 16.72 0.00 41.15 2.69
3809 6681 5.049198 TGAGCACAGACAGAAAAGCAAATAG 60.049 40.000 0.00 0.00 0.00 1.73
3814 6686 1.942657 GTGAGCACAGACAGAAAAGCA 59.057 47.619 0.00 0.00 0.00 3.91
3817 6689 3.461061 CTGAGTGAGCACAGACAGAAAA 58.539 45.455 10.40 0.00 35.72 2.29
3818 6690 2.224137 CCTGAGTGAGCACAGACAGAAA 60.224 50.000 15.27 0.00 35.72 2.52
3819 6691 1.342496 CCTGAGTGAGCACAGACAGAA 59.658 52.381 15.27 0.00 35.72 3.02
3820 6692 0.964700 CCTGAGTGAGCACAGACAGA 59.035 55.000 15.27 0.00 35.72 3.41
3821 6693 0.669932 GCCTGAGTGAGCACAGACAG 60.670 60.000 3.19 8.84 35.72 3.51
3822 6694 1.368950 GCCTGAGTGAGCACAGACA 59.631 57.895 3.19 0.19 35.72 3.41
3823 6695 1.735920 CGCCTGAGTGAGCACAGAC 60.736 63.158 3.19 0.00 35.72 3.51
3825 6697 0.390866 AATCGCCTGAGTGAGCACAG 60.391 55.000 3.19 0.00 35.57 3.66
3826 6698 0.671472 CAATCGCCTGAGTGAGCACA 60.671 55.000 3.19 0.00 42.67 4.57
3827 6699 1.975363 GCAATCGCCTGAGTGAGCAC 61.975 60.000 0.00 0.00 42.67 4.40
3832 6704 1.063174 GCTTAAGCAATCGCCTGAGTG 59.937 52.381 22.59 0.00 42.91 3.51
3833 6705 1.065854 AGCTTAAGCAATCGCCTGAGT 60.066 47.619 28.39 0.79 45.16 3.41
3834 6706 1.661341 AGCTTAAGCAATCGCCTGAG 58.339 50.000 28.39 0.00 45.16 3.35
3838 6710 1.913317 CCAAAGCTTAAGCAATCGCC 58.087 50.000 28.39 0.00 45.16 5.54
3839 6711 1.271876 GCCAAAGCTTAAGCAATCGC 58.728 50.000 28.39 19.32 45.16 4.58
3840 6712 1.202114 TGGCCAAAGCTTAAGCAATCG 59.798 47.619 28.39 14.01 45.16 3.34
3841 6713 3.317603 TTGGCCAAAGCTTAAGCAATC 57.682 42.857 28.39 12.32 45.16 2.67
3843 6715 3.202097 GTTTTGGCCAAAGCTTAAGCAA 58.798 40.909 31.13 12.78 45.16 3.91
3844 6716 2.169352 TGTTTTGGCCAAAGCTTAAGCA 59.831 40.909 35.40 19.36 45.16 3.91
3845 6717 2.832563 TGTTTTGGCCAAAGCTTAAGC 58.167 42.857 35.40 20.09 39.73 3.09
3846 6718 4.441792 ACTTGTTTTGGCCAAAGCTTAAG 58.558 39.130 35.40 31.58 39.73 1.85
3847 6719 4.479786 ACTTGTTTTGGCCAAAGCTTAA 57.520 36.364 35.40 24.80 39.73 1.85
3848 6720 4.081420 TCAACTTGTTTTGGCCAAAGCTTA 60.081 37.500 35.40 25.08 39.73 3.09
3849 6721 3.009026 CAACTTGTTTTGGCCAAAGCTT 58.991 40.909 35.40 23.49 39.73 3.74
3850 6722 2.235898 TCAACTTGTTTTGGCCAAAGCT 59.764 40.909 35.40 19.72 39.73 3.74
3851 6723 2.609002 CTCAACTTGTTTTGGCCAAAGC 59.391 45.455 31.56 31.56 38.76 3.51
3852 6724 3.197265 CCTCAACTTGTTTTGGCCAAAG 58.803 45.455 28.79 20.43 0.00 2.77
3859 6731 5.577835 TCATTTCGACCTCAACTTGTTTTG 58.422 37.500 0.00 0.00 0.00 2.44
3860 6732 5.828299 TCATTTCGACCTCAACTTGTTTT 57.172 34.783 0.00 0.00 0.00 2.43
3872 6744 3.343617 TCAGGATTGGTTCATTTCGACC 58.656 45.455 0.00 0.00 36.45 4.79
3873 6745 5.567138 AATCAGGATTGGTTCATTTCGAC 57.433 39.130 0.00 0.00 0.00 4.20
3876 6748 8.469200 TGATGTTAATCAGGATTGGTTCATTTC 58.531 33.333 4.81 0.00 37.91 2.17
3904 6777 3.009723 CCACACATGTACTGGGTTCATC 58.990 50.000 12.24 0.00 38.83 2.92
3914 6787 2.073816 GCACCACTACCACACATGTAC 58.926 52.381 0.00 0.00 0.00 2.90
3920 6793 0.037232 GAGGAGCACCACTACCACAC 60.037 60.000 2.07 0.00 38.94 3.82
3921 6794 0.471022 TGAGGAGCACCACTACCACA 60.471 55.000 2.07 0.00 38.94 4.17
3922 6795 0.685097 TTGAGGAGCACCACTACCAC 59.315 55.000 2.07 0.00 38.94 4.16
3923 6796 1.278985 CATTGAGGAGCACCACTACCA 59.721 52.381 2.07 0.00 38.94 3.25
3924 6797 1.407437 CCATTGAGGAGCACCACTACC 60.407 57.143 2.07 0.00 41.22 3.18
3925 6798 1.555075 TCCATTGAGGAGCACCACTAC 59.445 52.381 2.07 0.00 43.07 2.73
3926 6799 1.951209 TCCATTGAGGAGCACCACTA 58.049 50.000 2.07 0.00 43.07 2.74
3927 6800 2.777536 TCCATTGAGGAGCACCACT 58.222 52.632 2.07 0.00 43.07 4.00
3936 6809 2.028130 ACGCTACTCTCTCCATTGAGG 58.972 52.381 0.00 0.00 39.23 3.86
3955 6832 6.205853 TGTCTGTCCATACCATGTTTTTGTAC 59.794 38.462 0.00 0.00 0.00 2.90
3971 6848 3.202151 AGGAGGAAAGTTTTGTCTGTCCA 59.798 43.478 5.82 0.00 42.63 4.02
3974 6851 3.202151 TGGAGGAGGAAAGTTTTGTCTGT 59.798 43.478 0.00 0.00 0.00 3.41
3979 6856 2.232208 GGCATGGAGGAGGAAAGTTTTG 59.768 50.000 0.00 0.00 0.00 2.44
3981 6858 1.713078 AGGCATGGAGGAGGAAAGTTT 59.287 47.619 0.00 0.00 0.00 2.66
3982 6859 1.283321 GAGGCATGGAGGAGGAAAGTT 59.717 52.381 0.00 0.00 0.00 2.66
3983 6860 0.915364 GAGGCATGGAGGAGGAAAGT 59.085 55.000 0.00 0.00 0.00 2.66
3985 6862 0.620556 GTGAGGCATGGAGGAGGAAA 59.379 55.000 0.00 0.00 0.00 3.13
3987 6864 0.636647 TAGTGAGGCATGGAGGAGGA 59.363 55.000 0.00 0.00 0.00 3.71
3988 6865 1.139853 GTTAGTGAGGCATGGAGGAGG 59.860 57.143 0.00 0.00 0.00 4.30
3989 6866 1.833630 TGTTAGTGAGGCATGGAGGAG 59.166 52.381 0.00 0.00 0.00 3.69
3990 6867 1.833630 CTGTTAGTGAGGCATGGAGGA 59.166 52.381 0.00 0.00 0.00 3.71
3991 6868 1.745141 GCTGTTAGTGAGGCATGGAGG 60.745 57.143 0.00 0.00 0.00 4.30
3992 6869 1.661341 GCTGTTAGTGAGGCATGGAG 58.339 55.000 0.00 0.00 0.00 3.86
3993 6870 0.253044 GGCTGTTAGTGAGGCATGGA 59.747 55.000 0.00 0.00 36.06 3.41
3994 6871 0.035152 TGGCTGTTAGTGAGGCATGG 60.035 55.000 0.00 0.00 40.80 3.66
3995 6872 1.089920 GTGGCTGTTAGTGAGGCATG 58.910 55.000 0.00 0.00 46.52 4.06
3996 6873 0.692476 TGTGGCTGTTAGTGAGGCAT 59.308 50.000 0.00 0.00 46.52 4.40
3997 6874 0.035317 CTGTGGCTGTTAGTGAGGCA 59.965 55.000 0.00 0.00 43.23 4.75
3998 6875 0.674895 CCTGTGGCTGTTAGTGAGGC 60.675 60.000 0.00 0.00 36.55 4.70
3999 6876 0.674895 GCCTGTGGCTGTTAGTGAGG 60.675 60.000 0.73 0.00 46.69 3.86
4000 6877 2.846371 GCCTGTGGCTGTTAGTGAG 58.154 57.895 0.73 0.00 46.69 3.51
4010 6887 1.521681 GGAGTGTATCGCCTGTGGC 60.522 63.158 0.00 0.00 46.75 5.01
4011 6888 1.226974 CGGAGTGTATCGCCTGTGG 60.227 63.158 0.00 0.00 33.77 4.17
4012 6889 1.878522 GCGGAGTGTATCGCCTGTG 60.879 63.158 0.00 0.00 45.42 3.66
4013 6890 2.494918 GCGGAGTGTATCGCCTGT 59.505 61.111 0.00 0.00 45.42 4.00
4024 6901 1.133790 GATTGTAGTACCACGCGGAGT 59.866 52.381 12.47 10.07 35.59 3.85
4025 6902 1.404391 AGATTGTAGTACCACGCGGAG 59.596 52.381 12.47 2.99 35.59 4.63
4026 6903 1.466856 AGATTGTAGTACCACGCGGA 58.533 50.000 12.47 0.00 35.59 5.54
4027 6904 2.190981 GAAGATTGTAGTACCACGCGG 58.809 52.381 12.47 0.00 38.77 6.46
4028 6905 2.190981 GGAAGATTGTAGTACCACGCG 58.809 52.381 3.53 3.53 0.00 6.01
4029 6906 3.241067 TGGAAGATTGTAGTACCACGC 57.759 47.619 0.00 0.00 0.00 5.34
4030 6907 5.872617 TCATTTGGAAGATTGTAGTACCACG 59.127 40.000 0.00 0.00 0.00 4.94
4031 6908 6.653320 TGTCATTTGGAAGATTGTAGTACCAC 59.347 38.462 0.00 0.00 0.00 4.16
4032 6909 6.774673 TGTCATTTGGAAGATTGTAGTACCA 58.225 36.000 0.00 0.00 0.00 3.25
4033 6910 7.681939 TTGTCATTTGGAAGATTGTAGTACC 57.318 36.000 0.00 0.00 0.00 3.34
4034 6911 8.999431 TCTTTGTCATTTGGAAGATTGTAGTAC 58.001 33.333 0.00 0.00 0.00 2.73
4035 6912 9.567776 TTCTTTGTCATTTGGAAGATTGTAGTA 57.432 29.630 0.00 0.00 0.00 1.82
4036 6913 8.463930 TTCTTTGTCATTTGGAAGATTGTAGT 57.536 30.769 0.00 0.00 0.00 2.73
4037 6914 8.025445 CCTTCTTTGTCATTTGGAAGATTGTAG 58.975 37.037 0.00 0.00 36.48 2.74
4047 6924 3.641437 TTCGCCTTCTTTGTCATTTGG 57.359 42.857 0.00 0.00 0.00 3.28
4060 6937 5.680619 TCCAAGATATACATGTTTCGCCTT 58.319 37.500 2.30 0.00 0.00 4.35
4061 6938 5.290493 TCCAAGATATACATGTTTCGCCT 57.710 39.130 2.30 0.00 0.00 5.52
4065 6942 6.857964 CGGCAATTCCAAGATATACATGTTTC 59.142 38.462 2.30 0.00 34.01 2.78
4097 7033 6.241207 ACTACATCCAAGACGTCATTTTTG 57.759 37.500 19.50 12.91 0.00 2.44
4116 7052 7.488471 CACTGCCTGAACAACTACTATTACTAC 59.512 40.741 0.00 0.00 0.00 2.73
4117 7053 7.395206 TCACTGCCTGAACAACTACTATTACTA 59.605 37.037 0.00 0.00 0.00 1.82
4118 7054 6.210784 TCACTGCCTGAACAACTACTATTACT 59.789 38.462 0.00 0.00 0.00 2.24
4122 7058 4.618460 CGTCACTGCCTGAACAACTACTAT 60.618 45.833 0.00 0.00 0.00 2.12
4157 7098 1.278699 AGGAAAGAGCTCAGAGCCAAG 59.721 52.381 19.40 0.00 43.77 3.61
4196 7137 1.224315 CCATGCGATCCCCAAGTCA 59.776 57.895 0.00 0.00 0.00 3.41
4273 7214 2.021068 ATCGGCCATCTCTGACCACG 62.021 60.000 2.24 0.00 0.00 4.94
4277 7218 0.600557 ATCGATCGGCCATCTCTGAC 59.399 55.000 16.41 0.00 0.00 3.51
4302 7243 1.002544 AGCAGCTACAGAACCTTGGTC 59.997 52.381 0.00 0.00 0.00 4.02
4453 7394 4.695217 ATAAACTGGGTGCGTGTAAATG 57.305 40.909 0.00 0.00 0.00 2.32
4454 7395 5.124297 GGTAATAAACTGGGTGCGTGTAAAT 59.876 40.000 0.00 0.00 0.00 1.40
4455 7396 4.455190 GGTAATAAACTGGGTGCGTGTAAA 59.545 41.667 0.00 0.00 0.00 2.01
4456 7397 4.002316 GGTAATAAACTGGGTGCGTGTAA 58.998 43.478 0.00 0.00 0.00 2.41
4480 7421 1.625818 AGAACAAGATCGAACTGGCCT 59.374 47.619 3.32 0.00 0.00 5.19
4482 7423 3.067106 TCAAGAACAAGATCGAACTGGC 58.933 45.455 0.00 0.00 0.00 4.85
4500 7441 5.368145 AGTACATCACTTGTTCAGCTTCAA 58.632 37.500 0.00 0.00 39.87 2.69
4521 7462 8.976353 ACTATCATCTCAGTAATGTCTTCAAGT 58.024 33.333 0.00 0.00 0.00 3.16
4522 7463 9.814899 AACTATCATCTCAGTAATGTCTTCAAG 57.185 33.333 0.00 0.00 0.00 3.02
4523 7464 9.591792 CAACTATCATCTCAGTAATGTCTTCAA 57.408 33.333 0.00 0.00 0.00 2.69
4524 7465 8.753133 ACAACTATCATCTCAGTAATGTCTTCA 58.247 33.333 0.00 0.00 0.00 3.02
4525 7466 9.243637 GACAACTATCATCTCAGTAATGTCTTC 57.756 37.037 0.00 0.00 33.05 2.87
4526 7467 8.976353 AGACAACTATCATCTCAGTAATGTCTT 58.024 33.333 0.00 0.00 38.68 3.01
4527 7468 8.532186 AGACAACTATCATCTCAGTAATGTCT 57.468 34.615 0.00 0.00 37.74 3.41
4530 7471 9.175060 CGTAAGACAACTATCATCTCAGTAATG 57.825 37.037 0.00 0.00 43.02 1.90
4531 7472 8.353684 CCGTAAGACAACTATCATCTCAGTAAT 58.646 37.037 0.00 0.00 43.02 1.89
4532 7473 7.201794 CCCGTAAGACAACTATCATCTCAGTAA 60.202 40.741 0.00 0.00 43.02 2.24
4533 7474 6.262496 CCCGTAAGACAACTATCATCTCAGTA 59.738 42.308 0.00 0.00 43.02 2.74
4534 7475 5.067936 CCCGTAAGACAACTATCATCTCAGT 59.932 44.000 0.00 0.00 43.02 3.41
4535 7476 5.299531 TCCCGTAAGACAACTATCATCTCAG 59.700 44.000 0.00 0.00 43.02 3.35
4536 7477 5.067413 GTCCCGTAAGACAACTATCATCTCA 59.933 44.000 0.00 0.00 43.02 3.27
4537 7478 5.521544 GTCCCGTAAGACAACTATCATCTC 58.478 45.833 0.00 0.00 43.02 2.75
4538 7479 4.036498 CGTCCCGTAAGACAACTATCATCT 59.964 45.833 0.00 0.00 43.02 2.90
4539 7480 4.036027 TCGTCCCGTAAGACAACTATCATC 59.964 45.833 0.00 0.00 43.02 2.92
4540 7481 3.949754 TCGTCCCGTAAGACAACTATCAT 59.050 43.478 0.00 0.00 43.02 2.45
4541 7482 3.127548 GTCGTCCCGTAAGACAACTATCA 59.872 47.826 0.00 0.00 36.68 2.15
4542 7483 3.689346 GTCGTCCCGTAAGACAACTATC 58.311 50.000 0.00 0.00 36.68 2.08
4543 7484 2.096496 CGTCGTCCCGTAAGACAACTAT 59.904 50.000 0.00 0.00 36.49 2.12
4544 7485 1.464608 CGTCGTCCCGTAAGACAACTA 59.535 52.381 0.00 0.00 36.49 2.24
4545 7486 0.239347 CGTCGTCCCGTAAGACAACT 59.761 55.000 0.00 0.00 36.49 3.16
4546 7487 0.730494 CCGTCGTCCCGTAAGACAAC 60.730 60.000 0.00 0.00 36.49 3.32
4547 7488 1.580942 CCGTCGTCCCGTAAGACAA 59.419 57.895 0.00 0.00 36.49 3.18
4548 7489 2.981560 GCCGTCGTCCCGTAAGACA 61.982 63.158 0.00 0.00 36.49 3.41
4549 7490 2.202531 GCCGTCGTCCCGTAAGAC 60.203 66.667 0.00 0.00 43.02 3.01
4550 7491 3.803082 CGCCGTCGTCCCGTAAGA 61.803 66.667 0.00 0.00 43.02 2.10
4551 7492 4.842091 CCGCCGTCGTCCCGTAAG 62.842 72.222 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.