Multiple sequence alignment - TraesCS6A01G266400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G266400 chr6A 100.000 6344 0 0 1 6344 491913869 491920212 0.000000e+00 11716.0
1 TraesCS6A01G266400 chr6D 93.262 3384 143 39 2826 6196 351412172 351408861 0.000000e+00 4907.0
2 TraesCS6A01G266400 chr6D 93.210 2651 94 35 193 2786 351415081 351412460 0.000000e+00 3819.0
3 TraesCS6A01G266400 chr6D 94.393 107 6 0 1 107 351415281 351415175 1.410000e-36 165.0
4 TraesCS6A01G266400 chr6B 93.640 3003 125 32 3213 6196 527931283 527934238 0.000000e+00 4427.0
5 TraesCS6A01G266400 chr6B 91.876 2585 94 52 686 3218 527928640 527931160 0.000000e+00 3504.0
6 TraesCS6A01G266400 chr6B 92.461 451 27 4 190 633 527927881 527928331 6.940000e-179 638.0
7 TraesCS6A01G266400 chr5D 81.053 475 46 25 2936 3402 370748250 370747812 7.880000e-89 339.0
8 TraesCS6A01G266400 chr5D 82.132 319 19 17 4828 5125 370746695 370746394 8.220000e-59 239.0
9 TraesCS6A01G266400 chr5D 84.038 213 14 14 5412 5615 370746300 370746099 3.020000e-43 187.0
10 TraesCS6A01G266400 chr5A 86.029 272 25 8 3133 3402 473331657 473331397 4.840000e-71 279.0
11 TraesCS6A01G266400 chr5A 85.446 213 13 9 5412 5615 473324068 473323865 8.340000e-49 206.0
12 TraesCS6A01G266400 chr7B 81.201 383 32 21 5431 5789 147727469 147727835 8.100000e-69 272.0
13 TraesCS6A01G266400 chr7B 87.243 243 9 9 4003 4229 147724334 147724570 2.270000e-64 257.0
14 TraesCS6A01G266400 chr7B 79.930 284 23 19 5943 6196 147728730 147729009 1.820000e-40 178.0
15 TraesCS6A01G266400 chr7B 78.855 227 24 11 3751 3962 147723840 147724057 1.440000e-26 132.0
16 TraesCS6A01G266400 chr7B 86.957 69 2 2 5835 5899 147727857 147727922 3.170000e-08 71.3
17 TraesCS6A01G266400 chr3A 98.667 150 2 0 6195 6344 54576400 54576549 3.770000e-67 267.0
18 TraesCS6A01G266400 chr2A 97.368 152 4 0 6193 6344 298985161 298985010 6.310000e-65 259.0
19 TraesCS6A01G266400 chr4A 96.689 151 5 0 6194 6344 4473546 4473396 1.060000e-62 252.0
20 TraesCS6A01G266400 chr4A 94.737 152 1 2 6193 6344 684393100 684393244 4.950000e-56 230.0
21 TraesCS6A01G266400 chr4A 93.333 150 3 3 6195 6344 626382835 626382977 1.390000e-51 215.0
22 TraesCS6A01G266400 chr1A 94.667 150 1 2 6195 6344 113901914 113901772 6.400000e-55 226.0
23 TraesCS6A01G266400 chr7A 94.000 150 2 2 6195 6344 112480879 112480737 2.980000e-53 220.0
24 TraesCS6A01G266400 chr7A 94.000 150 2 2 6195 6344 674877612 674877470 2.980000e-53 220.0
25 TraesCS6A01G266400 chr7A 93.377 151 3 3 6194 6344 78395479 78395336 3.850000e-52 217.0
26 TraesCS6A01G266400 chr5B 86.385 213 13 7 5412 5615 440023427 440023222 1.070000e-52 219.0
27 TraesCS6A01G266400 chr5B 85.167 209 15 8 5416 5615 440024054 440023853 3.880000e-47 200.0
28 TraesCS6A01G266400 chr5B 79.128 321 22 25 4828 5125 440025112 440024814 5.050000e-41 180.0
29 TraesCS6A01G266400 chr5B 82.488 217 13 10 5988 6196 440022253 440022054 3.930000e-37 167.0
30 TraesCS6A01G266400 chr5B 79.167 264 16 15 5731 5978 440022630 440022390 5.130000e-31 147.0
31 TraesCS6A01G266400 chr1B 90.566 53 3 2 217 269 17639654 17639604 1.140000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G266400 chr6A 491913869 491920212 6343 False 11716.000000 11716 100.000000 1 6344 1 chr6A.!!$F1 6343
1 TraesCS6A01G266400 chr6D 351408861 351415281 6420 True 2963.666667 4907 93.621667 1 6196 3 chr6D.!!$R1 6195
2 TraesCS6A01G266400 chr6B 527927881 527934238 6357 False 2856.333333 4427 92.659000 190 6196 3 chr6B.!!$F1 6006
3 TraesCS6A01G266400 chr5D 370746099 370748250 2151 True 255.000000 339 82.407667 2936 5615 3 chr5D.!!$R1 2679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 391 0.103390 TCAAGGCGTCACTCGAAACA 59.897 50.0 0.00 0.0 42.86 2.83 F
856 1183 0.178990 GAGCTCCTCCTCTCCTCCTC 60.179 65.0 0.87 0.0 0.00 3.71 F
2334 2707 0.108945 CTTTACCACGACGGGAGGAC 60.109 60.0 0.00 0.0 40.22 3.85 F
2746 3133 0.168348 CGTCTCGTAGACCACCACTG 59.832 60.0 8.73 0.0 42.12 3.66 F
2751 3138 0.667487 CGTAGACCACCACTGCACAG 60.667 60.0 0.00 0.0 0.00 3.66 F
4414 5315 0.673333 TCTGCACGGCCAACTGTATG 60.673 55.0 2.24 0.0 32.71 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 2578 1.134521 TCTTACATGCATGACCGACCC 60.135 52.381 32.75 0.00 0.00 4.46 R
2724 3111 0.675837 TGGTGGTCTACGAGACGGAG 60.676 60.000 0.00 0.00 45.96 4.63 R
3347 4130 0.606401 CCGGTGCACTGGAAACTGAT 60.606 55.000 37.13 0.00 45.36 2.90 R
4506 5413 0.385473 GTGCGCACAACCACATACAC 60.385 55.000 34.52 2.48 32.37 2.90 R
4693 5608 1.573829 TAGGGAACAAAGCGCGCAAG 61.574 55.000 35.10 23.70 43.44 4.01 R
5685 7139 0.251033 AGCTTGTTGCATGCTCCTGA 60.251 50.000 20.33 0.00 40.06 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.597614 CACAGACAGAAGAGCAACTATTTTC 58.402 40.000 0.00 0.00 0.00 2.29
45 46 2.738321 GCAACTATTTTCCGCCATTGGG 60.738 50.000 4.53 0.00 37.18 4.12
98 99 2.519377 ACCGAGAAACGAACACATCA 57.481 45.000 0.00 0.00 45.77 3.07
106 107 5.538118 AGAAACGAACACATCAGACATACA 58.462 37.500 0.00 0.00 0.00 2.29
107 108 6.166279 AGAAACGAACACATCAGACATACAT 58.834 36.000 0.00 0.00 0.00 2.29
108 109 7.320399 AGAAACGAACACATCAGACATACATA 58.680 34.615 0.00 0.00 0.00 2.29
109 110 7.489435 AGAAACGAACACATCAGACATACATAG 59.511 37.037 0.00 0.00 0.00 2.23
110 111 5.592054 ACGAACACATCAGACATACATAGG 58.408 41.667 0.00 0.00 0.00 2.57
111 112 4.984785 CGAACACATCAGACATACATAGGG 59.015 45.833 0.00 0.00 0.00 3.53
112 113 5.451937 CGAACACATCAGACATACATAGGGT 60.452 44.000 0.00 0.00 0.00 4.34
113 114 5.957771 ACACATCAGACATACATAGGGTT 57.042 39.130 0.00 0.00 0.00 4.11
114 115 7.432148 AACACATCAGACATACATAGGGTTA 57.568 36.000 0.00 0.00 0.00 2.85
115 116 6.817184 ACACATCAGACATACATAGGGTTAC 58.183 40.000 0.00 0.00 0.00 2.50
116 117 6.611642 ACACATCAGACATACATAGGGTTACT 59.388 38.462 0.00 0.00 0.00 2.24
117 118 7.783119 ACACATCAGACATACATAGGGTTACTA 59.217 37.037 0.00 0.00 35.80 1.82
118 119 8.638873 CACATCAGACATACATAGGGTTACTAA 58.361 37.037 0.00 0.00 34.79 2.24
119 120 9.209048 ACATCAGACATACATAGGGTTACTAAA 57.791 33.333 0.00 0.00 34.79 1.85
173 174 2.290916 CGGACATACATAGAGCGTGAGT 59.709 50.000 0.00 0.00 0.00 3.41
299 361 0.555769 TCCCAAACAAGGTTGCCTCT 59.444 50.000 0.00 0.00 30.89 3.69
309 371 7.775053 AACAAGGTTGCCTCTCAATTTATTA 57.225 32.000 0.00 0.00 36.99 0.98
311 373 8.000780 ACAAGGTTGCCTCTCAATTTATTATC 57.999 34.615 0.00 0.00 36.99 1.75
312 374 7.615365 ACAAGGTTGCCTCTCAATTTATTATCA 59.385 33.333 0.00 0.00 36.99 2.15
323 385 7.224753 TCTCAATTTATTATCAAGGCGTCACTC 59.775 37.037 0.00 0.00 0.00 3.51
325 387 4.642445 TTATTATCAAGGCGTCACTCGA 57.358 40.909 0.00 0.00 42.86 4.04
328 390 1.429463 ATCAAGGCGTCACTCGAAAC 58.571 50.000 0.00 0.00 42.86 2.78
329 391 0.103390 TCAAGGCGTCACTCGAAACA 59.897 50.000 0.00 0.00 42.86 2.83
333 395 1.531149 AGGCGTCACTCGAAACAAATG 59.469 47.619 0.00 0.00 42.86 2.32
334 396 1.263217 GGCGTCACTCGAAACAAATGT 59.737 47.619 0.00 0.00 42.86 2.71
356 421 5.889289 TGTATAAAACCCAGCCAGTAAATCC 59.111 40.000 0.00 0.00 0.00 3.01
361 426 3.041946 ACCCAGCCAGTAAATCCTCTAG 58.958 50.000 0.00 0.00 0.00 2.43
368 433 7.775561 CCAGCCAGTAAATCCTCTAGTTTTTAT 59.224 37.037 0.00 0.00 0.00 1.40
412 477 2.981859 TCTGGAATTCCGAACTAGGC 57.018 50.000 19.57 0.00 39.43 3.93
443 512 3.751698 GTCCATAAGAACACCAACCTGAC 59.248 47.826 0.00 0.00 0.00 3.51
637 708 7.721842 GGAATAAAAAGGGGAGGAGATAAAGAG 59.278 40.741 0.00 0.00 0.00 2.85
640 711 1.224381 AGGGGAGGAGATAAAGAGGGG 59.776 57.143 0.00 0.00 0.00 4.79
836 1163 1.152139 CTCTCCTCCTCCCATCCCC 60.152 68.421 0.00 0.00 0.00 4.81
837 1164 2.525381 CTCCTCCTCCCATCCCCG 60.525 72.222 0.00 0.00 0.00 5.73
847 1174 2.123077 CATCCCCGAGCTCCTCCT 60.123 66.667 8.47 0.00 0.00 3.69
852 1179 2.600731 CCGAGCTCCTCCTCTCCT 59.399 66.667 8.47 0.00 0.00 3.69
855 1182 1.930520 GAGCTCCTCCTCTCCTCCT 59.069 63.158 0.87 0.00 0.00 3.69
856 1183 0.178990 GAGCTCCTCCTCTCCTCCTC 60.179 65.000 0.87 0.00 0.00 3.71
857 1184 1.152546 GCTCCTCCTCTCCTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
858 1185 1.541672 CTCCTCCTCTCCTCCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
891 1218 4.279169 CAGCAAGAAATCTTCCAAGTTCCA 59.721 41.667 0.00 0.00 33.11 3.53
910 1237 0.988832 ACACCTCAATTCCGCCCTAA 59.011 50.000 0.00 0.00 0.00 2.69
914 1241 0.546598 CTCAATTCCGCCCTAACCCT 59.453 55.000 0.00 0.00 0.00 4.34
915 1242 0.996583 TCAATTCCGCCCTAACCCTT 59.003 50.000 0.00 0.00 0.00 3.95
916 1243 1.356398 TCAATTCCGCCCTAACCCTTT 59.644 47.619 0.00 0.00 0.00 3.11
917 1244 2.176045 CAATTCCGCCCTAACCCTTTT 58.824 47.619 0.00 0.00 0.00 2.27
947 1295 0.530744 TAGCTAGCCACAAGTCCACG 59.469 55.000 12.13 0.00 0.00 4.94
948 1296 2.391389 GCTAGCCACAAGTCCACGC 61.391 63.158 2.29 0.00 0.00 5.34
970 1318 2.584608 GGCCGATAGCACACCACT 59.415 61.111 0.00 0.00 46.50 4.00
978 1326 2.169832 TAGCACACCACTTTGCTCTC 57.830 50.000 0.00 0.00 46.31 3.20
1622 1982 1.548973 CTCGCGCGTTCAAGTGTTCT 61.549 55.000 30.98 0.00 0.00 3.01
1671 2031 1.852895 CGTTAGCAGCCGTTAGATGAC 59.147 52.381 0.00 0.00 0.00 3.06
1673 2033 3.242969 CGTTAGCAGCCGTTAGATGACTA 60.243 47.826 0.00 0.00 0.00 2.59
1677 2037 4.372656 AGCAGCCGTTAGATGACTATTTC 58.627 43.478 0.00 0.00 0.00 2.17
1687 2051 7.593273 CGTTAGATGACTATTTCCTTCTAGCTG 59.407 40.741 0.00 0.00 0.00 4.24
1798 2162 7.704472 GGCATAGTACAAGCTAAGCTCTATATG 59.296 40.741 0.00 0.00 38.25 1.78
1829 2193 8.357402 GGTGAAGGAATTATTGTGTACTGTTTT 58.643 33.333 0.00 0.00 0.00 2.43
1832 2196 9.612620 GAAGGAATTATTGTGTACTGTTTTCTG 57.387 33.333 0.00 0.00 0.00 3.02
1995 2359 9.914834 TGGTTAGCTCATTGGTTATACTATTTT 57.085 29.630 0.00 0.00 0.00 1.82
2068 2434 7.687383 TCTACTACCACTTCAGATACTCCTA 57.313 40.000 0.00 0.00 0.00 2.94
2121 2490 1.654105 GAATTCTACGTGCACCACTCG 59.346 52.381 12.15 0.95 40.98 4.18
2122 2491 0.885879 ATTCTACGTGCACCACTCGA 59.114 50.000 12.15 0.00 38.60 4.04
2123 2492 0.885879 TTCTACGTGCACCACTCGAT 59.114 50.000 12.15 0.00 38.60 3.59
2124 2493 0.450583 TCTACGTGCACCACTCGATC 59.549 55.000 12.15 0.00 38.60 3.69
2147 2516 7.979444 TCGACCTTTAACTCATCATTTCTTT 57.021 32.000 0.00 0.00 0.00 2.52
2148 2517 8.391075 TCGACCTTTAACTCATCATTTCTTTT 57.609 30.769 0.00 0.00 0.00 2.27
2149 2518 8.504005 TCGACCTTTAACTCATCATTTCTTTTC 58.496 33.333 0.00 0.00 0.00 2.29
2150 2519 8.507249 CGACCTTTAACTCATCATTTCTTTTCT 58.493 33.333 0.00 0.00 0.00 2.52
2158 2527 4.281435 TCATCATTTCTTTTCTTGCTGCCA 59.719 37.500 0.00 0.00 0.00 4.92
2175 2547 6.464222 TGCTGCCAGAACAATATATAGTACC 58.536 40.000 0.00 0.00 0.00 3.34
2179 2551 8.029782 TGCCAGAACAATATATAGTACCAGTT 57.970 34.615 0.00 0.00 0.00 3.16
2268 2641 2.691409 TCTGAGCAGTAAATTCCCCG 57.309 50.000 0.00 0.00 0.00 5.73
2291 2664 0.396001 GCTCGTACCTCCTCCCTCTT 60.396 60.000 0.00 0.00 0.00 2.85
2303 2676 4.325719 TCCTCCCTCTTTCTCTATCCCTA 58.674 47.826 0.00 0.00 0.00 3.53
2330 2703 0.813184 CTAGCTTTACCACGACGGGA 59.187 55.000 0.00 0.00 40.22 5.14
2331 2704 0.813184 TAGCTTTACCACGACGGGAG 59.187 55.000 0.00 0.00 40.22 4.30
2334 2707 0.108945 CTTTACCACGACGGGAGGAC 60.109 60.000 0.00 0.00 40.22 3.85
2335 2708 1.535204 TTTACCACGACGGGAGGACC 61.535 60.000 0.00 0.00 40.22 4.46
2508 2891 4.240103 AGTGCACACAGGAGCGCA 62.240 61.111 21.04 0.00 42.55 6.09
2515 2902 2.588877 ACAGGAGCGCACACACAC 60.589 61.111 11.47 0.00 0.00 3.82
2516 2903 2.588596 CAGGAGCGCACACACACA 60.589 61.111 11.47 0.00 0.00 3.72
2600 2987 3.124921 CCGGCCGGCAAGTACAAG 61.125 66.667 34.96 3.26 0.00 3.16
2675 3062 3.584250 GATCGCGCCATCAATGCCG 62.584 63.158 10.32 0.00 0.00 5.69
2724 3111 2.299867 CCCTGCCACCCATATTTATTGC 59.700 50.000 0.00 0.00 0.00 3.56
2746 3133 0.168348 CGTCTCGTAGACCACCACTG 59.832 60.000 8.73 0.00 42.12 3.66
2751 3138 0.667487 CGTAGACCACCACTGCACAG 60.667 60.000 0.00 0.00 0.00 3.66
2755 3142 1.510480 GACCACCACTGCACAGCTTC 61.510 60.000 0.00 0.00 0.00 3.86
2767 3154 3.682858 TGCACAGCTTCGACTTTAATACC 59.317 43.478 0.00 0.00 0.00 2.73
2768 3155 3.241995 GCACAGCTTCGACTTTAATACCG 60.242 47.826 0.00 0.00 0.00 4.02
2779 3169 4.181578 ACTTTAATACCGCTACACTGCTG 58.818 43.478 0.00 0.00 0.00 4.41
2781 3171 2.295253 AATACCGCTACACTGCTGAC 57.705 50.000 0.00 0.00 0.00 3.51
2786 3176 0.747255 CGCTACACTGCTGACCCTAT 59.253 55.000 0.00 0.00 0.00 2.57
2788 3436 1.757118 GCTACACTGCTGACCCTATCA 59.243 52.381 0.00 0.00 35.45 2.15
2804 3452 8.585881 TGACCCTATCATTATTTAGTCAGCTAC 58.414 37.037 0.00 0.00 29.99 3.58
2805 3453 7.603651 ACCCTATCATTATTTAGTCAGCTACG 58.396 38.462 0.00 0.00 0.00 3.51
2806 3454 7.450634 ACCCTATCATTATTTAGTCAGCTACGA 59.549 37.037 0.00 0.00 0.00 3.43
2807 3455 7.971168 CCCTATCATTATTTAGTCAGCTACGAG 59.029 40.741 0.00 0.00 0.00 4.18
2811 3459 8.217131 TCATTATTTAGTCAGCTACGAGTACA 57.783 34.615 0.00 0.00 0.00 2.90
2812 3460 8.847196 TCATTATTTAGTCAGCTACGAGTACAT 58.153 33.333 0.00 0.00 0.00 2.29
2818 3466 8.899427 TTAGTCAGCTACGAGTACATATACTT 57.101 34.615 0.00 0.00 41.98 2.24
2819 3467 9.987272 TTAGTCAGCTACGAGTACATATACTTA 57.013 33.333 0.00 0.00 41.98 2.24
2847 3495 4.655762 ATGCTTTCTAGTGTATCAGCGA 57.344 40.909 0.00 0.00 0.00 4.93
2851 3499 4.971220 GCTTTCTAGTGTATCAGCGAGTAC 59.029 45.833 0.00 0.00 0.00 2.73
2853 3501 5.736486 TTCTAGTGTATCAGCGAGTACTG 57.264 43.478 0.00 0.00 39.12 2.74
2914 3562 1.455383 CCACTGACCACAAACCAGCC 61.455 60.000 0.00 0.00 0.00 4.85
2968 3616 4.742417 TCAGCTCTCGAGAAAGAAATCAG 58.258 43.478 17.36 2.32 0.00 2.90
2978 3626 5.482908 GAGAAAGAAATCAGACTACTGGCA 58.517 41.667 0.00 0.00 43.60 4.92
2984 3632 2.420058 TCAGACTACTGGCATCTCGA 57.580 50.000 0.00 0.00 43.60 4.04
2985 3633 2.017782 TCAGACTACTGGCATCTCGAC 58.982 52.381 0.00 0.00 43.60 4.20
3003 3651 0.979665 ACATCCCAGTGACAGACAGG 59.020 55.000 0.00 0.00 0.00 4.00
3012 3660 2.462456 TGACAGACAGGCACAGATTC 57.538 50.000 0.00 0.00 0.00 2.52
3018 3669 1.400846 GACAGGCACAGATTCAGCATG 59.599 52.381 8.27 8.27 44.69 4.06
3039 3690 5.282055 TGGGATTAGCAGTGAGTAGAATG 57.718 43.478 0.00 0.00 0.00 2.67
3219 4001 5.186409 TCCTCCAGGTAACAACATACTACAC 59.814 44.000 0.00 0.00 41.41 2.90
3231 4013 4.069304 ACATACTACACACAACGCCATTT 58.931 39.130 0.00 0.00 0.00 2.32
3235 4017 4.575885 ACTACACACAACGCCATTTCTAT 58.424 39.130 0.00 0.00 0.00 1.98
3236 4018 5.726397 ACTACACACAACGCCATTTCTATA 58.274 37.500 0.00 0.00 0.00 1.31
3244 4026 4.181309 ACGCCATTTCTATAGCTAGCTC 57.819 45.455 23.26 1.18 0.00 4.09
3282 4064 4.647611 TCGTTTTGTATTCTGGTGGATGT 58.352 39.130 0.00 0.00 0.00 3.06
3288 4070 6.493189 TTGTATTCTGGTGGATGTATGCTA 57.507 37.500 0.00 0.00 0.00 3.49
3291 4073 4.672587 TTCTGGTGGATGTATGCTACTC 57.327 45.455 0.00 0.00 0.00 2.59
3311 4094 6.159299 ACTCCATATCACATGAGAGAACAG 57.841 41.667 0.00 0.00 0.00 3.16
3326 4109 2.038952 AGAACAGCACAGCACCTAATCA 59.961 45.455 0.00 0.00 0.00 2.57
3332 4115 3.055167 AGCACAGCACCTAATCATACACA 60.055 43.478 0.00 0.00 0.00 3.72
3333 4116 3.689161 GCACAGCACCTAATCATACACAA 59.311 43.478 0.00 0.00 0.00 3.33
3334 4117 4.155826 GCACAGCACCTAATCATACACAAA 59.844 41.667 0.00 0.00 0.00 2.83
3337 4120 7.633621 CACAGCACCTAATCATACACAAATAG 58.366 38.462 0.00 0.00 0.00 1.73
3340 4123 8.765219 CAGCACCTAATCATACACAAATAGTAC 58.235 37.037 0.00 0.00 0.00 2.73
3355 4138 9.559958 CACAAATAGTACAATTCCATCAGTTTC 57.440 33.333 0.00 0.00 0.00 2.78
3386 4171 3.126858 CGGTGATGATCGGTTTGAATTGT 59.873 43.478 0.00 0.00 0.00 2.71
3387 4172 4.331443 CGGTGATGATCGGTTTGAATTGTA 59.669 41.667 0.00 0.00 0.00 2.41
3388 4173 5.007626 CGGTGATGATCGGTTTGAATTGTAT 59.992 40.000 0.00 0.00 0.00 2.29
3389 4174 6.201997 CGGTGATGATCGGTTTGAATTGTATA 59.798 38.462 0.00 0.00 0.00 1.47
3391 4176 8.070171 GGTGATGATCGGTTTGAATTGTATAAG 58.930 37.037 0.00 0.00 0.00 1.73
3392 4177 8.612619 GTGATGATCGGTTTGAATTGTATAAGT 58.387 33.333 0.00 0.00 0.00 2.24
3393 4178 9.825109 TGATGATCGGTTTGAATTGTATAAGTA 57.175 29.630 0.00 0.00 0.00 2.24
3500 4285 5.749462 AGTGGGCTATTAATGGATATCAGC 58.251 41.667 4.83 2.83 0.00 4.26
3607 4392 1.045911 AGAGGGGCACAGCTAGCTAC 61.046 60.000 18.86 9.95 0.00 3.58
3831 4720 6.525578 TGTACAGGTATTCGTCAAGAATCT 57.474 37.500 0.00 0.00 45.95 2.40
3845 4734 6.021390 CGTCAAGAATCTACAGTCACATTACG 60.021 42.308 0.00 0.00 0.00 3.18
4187 5086 8.556194 CGACTACAATTAATTAAGCAGGCAATA 58.444 33.333 0.00 0.00 0.00 1.90
4247 5148 4.395231 ACATCTCAGAAGCAACATGACATG 59.605 41.667 14.02 14.02 0.00 3.21
4257 5158 8.424133 AGAAGCAACATGACATGTATATAGTGA 58.576 33.333 21.10 0.00 44.07 3.41
4310 5211 3.067721 CGTAGCTAGCTCTTGTACACC 57.932 52.381 23.26 0.00 0.00 4.16
4414 5315 0.673333 TCTGCACGGCCAACTGTATG 60.673 55.000 2.24 0.00 32.71 2.39
4506 5413 6.484643 AGAAAATGACCGGAGAACATATGATG 59.515 38.462 9.46 0.00 0.00 3.07
4515 5422 5.406477 CGGAGAACATATGATGTGTATGTGG 59.594 44.000 10.38 0.00 44.07 4.17
4516 5423 6.291377 GGAGAACATATGATGTGTATGTGGT 58.709 40.000 10.38 0.00 44.07 4.16
4522 5429 1.803555 TGATGTGTATGTGGTTGTGCG 59.196 47.619 0.00 0.00 0.00 5.34
4629 5536 5.242838 CCAATTACACAGCTTTTTACCTCCA 59.757 40.000 0.00 0.00 0.00 3.86
4669 5584 2.037136 AGCTGCTCGCCATTGACAC 61.037 57.895 0.00 0.00 40.39 3.67
4693 5608 6.039382 ACCATCTTAACAGTGAAAAGTTGGAC 59.961 38.462 27.49 0.00 40.32 4.02
4743 6117 1.003355 CCTCTCCCGTGTTGCATGT 60.003 57.895 0.00 0.00 0.00 3.21
4770 6145 4.844085 TGGACTCCCACTGAAGAAAAGATA 59.156 41.667 0.00 0.00 37.58 1.98
4871 6287 8.712228 ACTTAATTCAATTCCTTCCTTTGTCT 57.288 30.769 0.00 0.00 0.00 3.41
5022 6450 4.104102 TCATCATTACCACCTCCAATACCC 59.896 45.833 0.00 0.00 0.00 3.69
5162 6603 6.806739 CAGCATGCATTTCCTGTTATGATATG 59.193 38.462 21.98 0.00 0.00 1.78
5302 6743 3.506096 CGGAGCTAGTCGTCGGCA 61.506 66.667 0.00 0.00 0.00 5.69
5412 6857 4.739195 GCTAGCTAGCTATATGTGACCAC 58.261 47.826 33.71 4.16 45.62 4.16
5413 6858 4.381079 GCTAGCTAGCTATATGTGACCACC 60.381 50.000 33.71 3.53 45.62 4.61
5496 6941 1.076632 GAAGCGGAGGAGGAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
5502 6947 0.753848 GGAGGAGGAGGAGAGAACCG 60.754 65.000 0.00 0.00 34.73 4.44
5759 7214 4.285851 TGCACAACACACACACGA 57.714 50.000 0.00 0.00 0.00 4.35
5760 7215 2.774044 TGCACAACACACACACGAT 58.226 47.368 0.00 0.00 0.00 3.73
5761 7216 0.376502 TGCACAACACACACACGATG 59.623 50.000 0.00 0.00 0.00 3.84
5762 7217 0.376852 GCACAACACACACACGATGT 59.623 50.000 0.00 0.00 44.81 3.06
5794 7263 0.384230 GTGTGTATGTGTGCGTGCAC 60.384 55.000 17.72 17.72 44.16 4.57
5795 7264 0.531753 TGTGTATGTGTGCGTGCACT 60.532 50.000 23.86 8.32 44.20 4.40
5796 7265 0.586319 GTGTATGTGTGCGTGCACTT 59.414 50.000 23.86 12.30 46.30 3.16
5797 7266 0.865111 TGTATGTGTGCGTGCACTTC 59.135 50.000 23.86 17.01 46.30 3.01
5798 7267 0.865111 GTATGTGTGCGTGCACTTCA 59.135 50.000 23.86 21.16 46.30 3.02
5799 7268 1.464608 GTATGTGTGCGTGCACTTCAT 59.535 47.619 23.86 25.00 46.30 2.57
5800 7269 0.239082 ATGTGTGCGTGCACTTCATG 59.761 50.000 23.86 0.00 46.30 3.07
5801 7270 1.081906 GTGTGCGTGCACTTCATGG 60.082 57.895 23.86 0.00 46.30 3.66
5802 7271 2.126734 GTGCGTGCACTTCATGGC 60.127 61.111 17.32 10.22 43.12 4.40
5803 7272 2.594013 TGCGTGCACTTCATGGCA 60.594 55.556 16.19 12.90 37.77 4.92
5912 7382 8.373256 GCTTATGTTACATATATGCGTGTGTAG 58.627 37.037 12.79 4.92 0.00 2.74
5975 7445 1.408702 CTGTCTTGCTCTCTCCTAGCC 59.591 57.143 0.00 0.00 39.30 3.93
6121 7591 6.633500 TCAACAAAAGGAGTATTTGGAGTG 57.367 37.500 4.29 0.44 41.08 3.51
6157 7627 3.111853 TGTCTACCAAGTTGACTGCAG 57.888 47.619 13.48 13.48 38.64 4.41
6165 7635 5.238583 ACCAAGTTGACTGCAGTATACTTC 58.761 41.667 29.35 15.72 32.74 3.01
6196 7666 6.091849 CCACATCGATGGATCAGTCAATAATC 59.908 42.308 28.09 0.00 43.02 1.75
6197 7667 6.872547 CACATCGATGGATCAGTCAATAATCT 59.127 38.462 28.09 0.00 0.00 2.40
6198 7668 7.387122 CACATCGATGGATCAGTCAATAATCTT 59.613 37.037 28.09 0.00 0.00 2.40
6199 7669 7.601886 ACATCGATGGATCAGTCAATAATCTTC 59.398 37.037 28.09 0.00 0.00 2.87
6200 7670 7.295322 TCGATGGATCAGTCAATAATCTTCT 57.705 36.000 0.00 0.00 0.00 2.85
6201 7671 8.409358 TCGATGGATCAGTCAATAATCTTCTA 57.591 34.615 0.00 0.00 0.00 2.10
6202 7672 9.029368 TCGATGGATCAGTCAATAATCTTCTAT 57.971 33.333 0.00 0.00 0.00 1.98
6220 7690 8.770010 TCTTCTATATCTAAATAGCTAGCCCC 57.230 38.462 12.13 0.00 30.79 5.80
6221 7691 7.785506 TCTTCTATATCTAAATAGCTAGCCCCC 59.214 40.741 12.13 0.00 30.79 5.40
6222 7692 6.993408 TCTATATCTAAATAGCTAGCCCCCA 58.007 40.000 12.13 0.00 30.79 4.96
6223 7693 5.959583 ATATCTAAATAGCTAGCCCCCAC 57.040 43.478 12.13 0.00 0.00 4.61
6224 7694 3.346146 TCTAAATAGCTAGCCCCCACT 57.654 47.619 12.13 0.00 0.00 4.00
6225 7695 4.480777 TCTAAATAGCTAGCCCCCACTA 57.519 45.455 12.13 0.00 0.00 2.74
6226 7696 4.823107 TCTAAATAGCTAGCCCCCACTAA 58.177 43.478 12.13 0.00 0.00 2.24
6227 7697 3.859061 AAATAGCTAGCCCCCACTAAC 57.141 47.619 12.13 0.00 0.00 2.34
6228 7698 2.489528 ATAGCTAGCCCCCACTAACA 57.510 50.000 12.13 0.00 0.00 2.41
6229 7699 2.489528 TAGCTAGCCCCCACTAACAT 57.510 50.000 12.13 0.00 0.00 2.71
6230 7700 2.489528 AGCTAGCCCCCACTAACATA 57.510 50.000 12.13 0.00 0.00 2.29
6231 7701 2.991580 AGCTAGCCCCCACTAACATAT 58.008 47.619 12.13 0.00 0.00 1.78
6232 7702 3.327439 AGCTAGCCCCCACTAACATATT 58.673 45.455 12.13 0.00 0.00 1.28
6233 7703 3.722101 AGCTAGCCCCCACTAACATATTT 59.278 43.478 12.13 0.00 0.00 1.40
6234 7704 4.072839 GCTAGCCCCCACTAACATATTTC 58.927 47.826 2.29 0.00 0.00 2.17
6235 7705 4.202472 GCTAGCCCCCACTAACATATTTCT 60.202 45.833 2.29 0.00 0.00 2.52
6236 7706 4.439253 AGCCCCCACTAACATATTTCTC 57.561 45.455 0.00 0.00 0.00 2.87
6237 7707 4.047883 AGCCCCCACTAACATATTTCTCT 58.952 43.478 0.00 0.00 0.00 3.10
6238 7708 4.103311 AGCCCCCACTAACATATTTCTCTC 59.897 45.833 0.00 0.00 0.00 3.20
6239 7709 4.141482 GCCCCCACTAACATATTTCTCTCA 60.141 45.833 0.00 0.00 0.00 3.27
6240 7710 5.631481 GCCCCCACTAACATATTTCTCTCAA 60.631 44.000 0.00 0.00 0.00 3.02
6241 7711 5.823045 CCCCCACTAACATATTTCTCTCAAC 59.177 44.000 0.00 0.00 0.00 3.18
6242 7712 6.414732 CCCCACTAACATATTTCTCTCAACA 58.585 40.000 0.00 0.00 0.00 3.33
6243 7713 7.056635 CCCCACTAACATATTTCTCTCAACAT 58.943 38.462 0.00 0.00 0.00 2.71
6244 7714 7.012704 CCCCACTAACATATTTCTCTCAACATG 59.987 40.741 0.00 0.00 0.00 3.21
6245 7715 7.412853 CCACTAACATATTTCTCTCAACATGC 58.587 38.462 0.00 0.00 0.00 4.06
6246 7716 7.066163 CCACTAACATATTTCTCTCAACATGCA 59.934 37.037 0.00 0.00 0.00 3.96
6247 7717 8.453320 CACTAACATATTTCTCTCAACATGCAA 58.547 33.333 0.00 0.00 0.00 4.08
6248 7718 8.671921 ACTAACATATTTCTCTCAACATGCAAG 58.328 33.333 0.00 0.00 0.00 4.01
6249 7719 5.888105 ACATATTTCTCTCAACATGCAAGC 58.112 37.500 0.00 0.00 0.00 4.01
6250 7720 5.416639 ACATATTTCTCTCAACATGCAAGCA 59.583 36.000 0.00 0.00 0.00 3.91
6251 7721 6.096423 ACATATTTCTCTCAACATGCAAGCAT 59.904 34.615 0.86 0.86 37.08 3.79
6264 7734 2.951457 CAAGCATGCCACATCATCAA 57.049 45.000 15.66 0.00 0.00 2.57
6265 7735 2.809446 CAAGCATGCCACATCATCAAG 58.191 47.619 15.66 0.00 0.00 3.02
6266 7736 0.744874 AGCATGCCACATCATCAAGC 59.255 50.000 15.66 0.00 0.00 4.01
6267 7737 0.458260 GCATGCCACATCATCAAGCA 59.542 50.000 6.36 0.00 37.94 3.91
6268 7738 1.134936 GCATGCCACATCATCAAGCAA 60.135 47.619 6.36 0.00 36.95 3.91
6269 7739 2.536365 CATGCCACATCATCAAGCAAC 58.464 47.619 0.00 0.00 36.95 4.17
6270 7740 1.618487 TGCCACATCATCAAGCAACA 58.382 45.000 0.00 0.00 0.00 3.33
6271 7741 2.172679 TGCCACATCATCAAGCAACAT 58.827 42.857 0.00 0.00 0.00 2.71
6272 7742 2.094442 TGCCACATCATCAAGCAACATG 60.094 45.455 0.00 0.00 0.00 3.21
6273 7743 2.536365 CCACATCATCAAGCAACATGC 58.464 47.619 0.00 0.00 45.46 4.06
6284 7754 1.798283 GCAACATGCATGGCAAAAGA 58.202 45.000 29.41 0.00 43.62 2.52
6285 7755 1.461897 GCAACATGCATGGCAAAAGAC 59.538 47.619 29.41 7.21 43.62 3.01
6286 7756 2.070783 CAACATGCATGGCAAAAGACC 58.929 47.619 29.41 0.00 43.62 3.85
6287 7757 0.609662 ACATGCATGGCAAAAGACCC 59.390 50.000 29.41 0.00 43.62 4.46
6288 7758 0.609151 CATGCATGGCAAAAGACCCA 59.391 50.000 19.40 0.00 43.62 4.51
6289 7759 1.208535 CATGCATGGCAAAAGACCCAT 59.791 47.619 19.40 0.00 43.62 4.00
6290 7760 0.896923 TGCATGGCAAAAGACCCATC 59.103 50.000 0.00 0.00 39.76 3.51
6291 7761 0.896923 GCATGGCAAAAGACCCATCA 59.103 50.000 0.00 0.00 39.76 3.07
6292 7762 1.404583 GCATGGCAAAAGACCCATCAC 60.405 52.381 0.00 0.00 39.76 3.06
6293 7763 1.894466 CATGGCAAAAGACCCATCACA 59.106 47.619 0.00 0.00 39.76 3.58
6294 7764 2.079170 TGGCAAAAGACCCATCACAA 57.921 45.000 0.00 0.00 0.00 3.33
6295 7765 2.607499 TGGCAAAAGACCCATCACAAT 58.393 42.857 0.00 0.00 0.00 2.71
6296 7766 2.971330 TGGCAAAAGACCCATCACAATT 59.029 40.909 0.00 0.00 0.00 2.32
6297 7767 3.006752 TGGCAAAAGACCCATCACAATTC 59.993 43.478 0.00 0.00 0.00 2.17
6298 7768 3.006752 GGCAAAAGACCCATCACAATTCA 59.993 43.478 0.00 0.00 0.00 2.57
6299 7769 3.989817 GCAAAAGACCCATCACAATTCAC 59.010 43.478 0.00 0.00 0.00 3.18
6300 7770 4.501229 GCAAAAGACCCATCACAATTCACA 60.501 41.667 0.00 0.00 0.00 3.58
6301 7771 5.599732 CAAAAGACCCATCACAATTCACAA 58.400 37.500 0.00 0.00 0.00 3.33
6302 7772 4.853924 AAGACCCATCACAATTCACAAC 57.146 40.909 0.00 0.00 0.00 3.32
6303 7773 3.831323 AGACCCATCACAATTCACAACA 58.169 40.909 0.00 0.00 0.00 3.33
6304 7774 4.410099 AGACCCATCACAATTCACAACAT 58.590 39.130 0.00 0.00 0.00 2.71
6305 7775 4.219070 AGACCCATCACAATTCACAACATG 59.781 41.667 0.00 0.00 0.00 3.21
6306 7776 3.255725 CCCATCACAATTCACAACATGC 58.744 45.455 0.00 0.00 0.00 4.06
6307 7777 3.306156 CCCATCACAATTCACAACATGCA 60.306 43.478 0.00 0.00 0.00 3.96
6308 7778 4.500127 CCATCACAATTCACAACATGCAT 58.500 39.130 0.00 0.00 0.00 3.96
6309 7779 4.932799 CCATCACAATTCACAACATGCATT 59.067 37.500 0.00 0.00 0.00 3.56
6310 7780 5.062934 CCATCACAATTCACAACATGCATTC 59.937 40.000 0.00 0.00 0.00 2.67
6311 7781 5.197682 TCACAATTCACAACATGCATTCA 57.802 34.783 0.00 0.00 0.00 2.57
6312 7782 5.785243 TCACAATTCACAACATGCATTCAT 58.215 33.333 0.00 0.00 0.00 2.57
6330 7800 4.177165 TCATGCACATGAAAATGTCCAC 57.823 40.909 10.82 0.00 44.14 4.02
6331 7801 3.056678 TCATGCACATGAAAATGTCCACC 60.057 43.478 10.82 0.00 44.14 4.61
6332 7802 2.596346 TGCACATGAAAATGTCCACCT 58.404 42.857 0.00 0.00 31.37 4.00
6333 7803 2.557924 TGCACATGAAAATGTCCACCTC 59.442 45.455 0.00 0.00 31.37 3.85
6334 7804 2.557924 GCACATGAAAATGTCCACCTCA 59.442 45.455 0.00 0.00 31.37 3.86
6335 7805 3.005684 GCACATGAAAATGTCCACCTCAA 59.994 43.478 0.00 0.00 31.37 3.02
6336 7806 4.549458 CACATGAAAATGTCCACCTCAAC 58.451 43.478 0.00 0.00 31.37 3.18
6337 7807 4.037803 CACATGAAAATGTCCACCTCAACA 59.962 41.667 0.00 0.00 31.37 3.33
6338 7808 4.834496 ACATGAAAATGTCCACCTCAACAT 59.166 37.500 0.00 0.00 37.71 2.71
6339 7809 4.852134 TGAAAATGTCCACCTCAACATG 57.148 40.909 0.00 0.00 36.28 3.21
6340 7810 3.005684 TGAAAATGTCCACCTCAACATGC 59.994 43.478 0.00 0.00 36.28 4.06
6341 7811 2.291209 AATGTCCACCTCAACATGCA 57.709 45.000 0.00 0.00 36.28 3.96
6342 7812 2.291209 ATGTCCACCTCAACATGCAA 57.709 45.000 0.00 0.00 34.88 4.08
6343 7813 2.064434 TGTCCACCTCAACATGCAAA 57.936 45.000 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.348050 GGAAAATAGTTGCTCTTCTGTCTGTG 60.348 42.308 0.00 0.00 0.00 3.66
45 46 0.827507 TTGTCTTTTCTGGGCCAGGC 60.828 55.000 32.23 10.70 31.51 4.85
56 57 6.643360 GGTTGTGTGTGTTTAAGTTGTCTTTT 59.357 34.615 0.00 0.00 35.36 2.27
59 60 4.142773 CGGTTGTGTGTGTTTAAGTTGTCT 60.143 41.667 0.00 0.00 0.00 3.41
143 144 5.527582 GCTCTATGTATGTCCGATGGTTTTT 59.472 40.000 0.00 0.00 0.00 1.94
144 145 5.057149 GCTCTATGTATGTCCGATGGTTTT 58.943 41.667 0.00 0.00 0.00 2.43
145 146 4.632153 GCTCTATGTATGTCCGATGGTTT 58.368 43.478 0.00 0.00 0.00 3.27
146 147 3.305403 CGCTCTATGTATGTCCGATGGTT 60.305 47.826 0.00 0.00 0.00 3.67
147 148 2.229062 CGCTCTATGTATGTCCGATGGT 59.771 50.000 0.00 0.00 0.00 3.55
148 149 2.229062 ACGCTCTATGTATGTCCGATGG 59.771 50.000 0.00 0.00 0.00 3.51
149 150 3.058224 TCACGCTCTATGTATGTCCGATG 60.058 47.826 0.00 0.00 0.00 3.84
150 151 3.146847 TCACGCTCTATGTATGTCCGAT 58.853 45.455 0.00 0.00 0.00 4.18
151 152 2.548480 CTCACGCTCTATGTATGTCCGA 59.452 50.000 0.00 0.00 0.00 4.55
152 153 2.290916 ACTCACGCTCTATGTATGTCCG 59.709 50.000 0.00 0.00 0.00 4.79
153 154 3.315470 TCACTCACGCTCTATGTATGTCC 59.685 47.826 0.00 0.00 0.00 4.02
154 155 4.201920 TGTCACTCACGCTCTATGTATGTC 60.202 45.833 0.00 0.00 0.00 3.06
155 156 3.694566 TGTCACTCACGCTCTATGTATGT 59.305 43.478 0.00 0.00 0.00 2.29
156 157 4.292977 TGTCACTCACGCTCTATGTATG 57.707 45.455 0.00 0.00 0.00 2.39
157 158 4.399618 AGTTGTCACTCACGCTCTATGTAT 59.600 41.667 0.00 0.00 0.00 2.29
158 159 3.756963 AGTTGTCACTCACGCTCTATGTA 59.243 43.478 0.00 0.00 0.00 2.29
173 174 6.585695 AACTTACTTATCGGAGAGTTGTCA 57.414 37.500 2.68 0.00 43.63 3.58
184 185 6.036083 CACCACAGGATCAAACTTACTTATCG 59.964 42.308 0.00 0.00 0.00 2.92
191 253 4.288366 TCCATCACCACAGGATCAAACTTA 59.712 41.667 0.00 0.00 0.00 2.24
238 300 7.064371 CGGATTTGCTAAATCTCATCTAGATGG 59.936 40.741 28.30 19.83 44.56 3.51
299 361 6.019075 CGAGTGACGCCTTGATAATAAATTGA 60.019 38.462 0.00 0.00 34.51 2.57
309 371 1.270094 TGTTTCGAGTGACGCCTTGAT 60.270 47.619 0.00 0.00 42.26 2.57
311 373 0.934496 TTGTTTCGAGTGACGCCTTG 59.066 50.000 0.00 0.00 42.26 3.61
312 374 1.658994 TTTGTTTCGAGTGACGCCTT 58.341 45.000 0.00 0.00 42.26 4.35
323 385 5.575218 GGCTGGGTTTTATACATTTGTTTCG 59.425 40.000 0.00 0.00 0.00 3.46
325 387 6.042666 ACTGGCTGGGTTTTATACATTTGTTT 59.957 34.615 0.00 0.00 0.00 2.83
328 390 5.659440 ACTGGCTGGGTTTTATACATTTG 57.341 39.130 0.00 0.00 0.00 2.32
329 391 7.784470 TTTACTGGCTGGGTTTTATACATTT 57.216 32.000 0.00 0.00 0.00 2.32
333 395 6.127101 AGGATTTACTGGCTGGGTTTTATAC 58.873 40.000 0.00 0.00 0.00 1.47
334 396 6.159751 AGAGGATTTACTGGCTGGGTTTTATA 59.840 38.462 0.00 0.00 0.00 0.98
356 421 7.713750 TCGTCATGTAGGGATAAAAACTAGAG 58.286 38.462 0.00 0.00 0.00 2.43
361 426 5.220529 CGGTTCGTCATGTAGGGATAAAAAC 60.221 44.000 0.00 0.00 0.00 2.43
368 433 1.324740 CCCGGTTCGTCATGTAGGGA 61.325 60.000 0.00 0.00 39.71 4.20
412 477 5.047306 TGGTGTTCTTATGGACAGACTACAG 60.047 44.000 0.00 0.00 0.00 2.74
519 588 2.358247 TCGCGGGAAGGCAAGAAC 60.358 61.111 6.13 0.00 0.00 3.01
648 719 3.202906 CCTTTCACTTTCGTTCCTCACA 58.797 45.455 0.00 0.00 0.00 3.58
650 721 2.486548 CCCCTTTCACTTTCGTTCCTCA 60.487 50.000 0.00 0.00 0.00 3.86
673 744 1.087202 TTCGTCCATACACCATGCGC 61.087 55.000 0.00 0.00 32.84 6.09
836 1163 1.528309 GGAGGAGAGGAGGAGCTCG 60.528 68.421 7.83 0.00 31.95 5.03
837 1164 0.178990 GAGGAGGAGAGGAGGAGCTC 60.179 65.000 4.71 4.71 0.00 4.09
847 1174 0.996762 GAGAGAGGGGGAGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
852 1179 2.204624 TGGGAGAGAGGGGGAGGA 60.205 66.667 0.00 0.00 0.00 3.71
855 1182 2.829639 CTTGCTGGGAGAGAGGGGGA 62.830 65.000 0.00 0.00 0.00 4.81
856 1183 2.285668 TTGCTGGGAGAGAGGGGG 60.286 66.667 0.00 0.00 0.00 5.40
857 1184 0.911525 TTCTTGCTGGGAGAGAGGGG 60.912 60.000 0.00 0.00 0.00 4.79
858 1185 0.987294 TTTCTTGCTGGGAGAGAGGG 59.013 55.000 0.00 0.00 0.00 4.30
891 1218 0.988832 TTAGGGCGGAATTGAGGTGT 59.011 50.000 0.00 0.00 0.00 4.16
910 1237 4.027437 AGCTAGAGAGATCGAAAAAGGGT 58.973 43.478 0.00 0.00 0.00 4.34
914 1241 4.645136 TGGCTAGCTAGAGAGATCGAAAAA 59.355 41.667 25.15 0.00 0.00 1.94
915 1242 4.036971 GTGGCTAGCTAGAGAGATCGAAAA 59.963 45.833 25.15 0.00 0.00 2.29
916 1243 3.566322 GTGGCTAGCTAGAGAGATCGAAA 59.434 47.826 25.15 0.00 0.00 3.46
917 1244 3.142951 GTGGCTAGCTAGAGAGATCGAA 58.857 50.000 25.15 0.00 0.00 3.71
953 1301 0.676782 AAAGTGGTGTGCTATCGGCC 60.677 55.000 0.00 0.00 40.92 6.13
956 1304 3.975992 GCAAAGTGGTGTGCTATCG 57.024 52.632 0.00 0.00 37.78 2.92
961 1309 1.845809 CGGAGAGCAAAGTGGTGTGC 61.846 60.000 0.00 0.00 41.22 4.57
982 1330 2.636830 CATTGATCCCTCTCGCAAGTT 58.363 47.619 0.00 0.00 39.48 2.66
984 1332 1.139654 TCCATTGATCCCTCTCGCAAG 59.860 52.381 0.00 0.00 0.00 4.01
1622 1982 9.807649 CAAGAAAATTCAGGAGAAGAAGAAAAA 57.192 29.630 0.00 0.00 37.14 1.94
1671 2031 5.189180 ACTTTGCCAGCTAGAAGGAAATAG 58.811 41.667 5.18 4.48 0.00 1.73
1673 2033 4.039603 ACTTTGCCAGCTAGAAGGAAAT 57.960 40.909 5.18 0.00 0.00 2.17
1677 2037 2.911484 CCTACTTTGCCAGCTAGAAGG 58.089 52.381 0.00 0.00 0.00 3.46
1687 2051 1.839424 ACAGGATTGCCTACTTTGCC 58.161 50.000 0.00 0.00 44.80 4.52
1783 2147 5.363868 TCACCAACACATATAGAGCTTAGCT 59.636 40.000 6.37 6.37 43.88 3.32
1798 2162 6.084326 ACACAATAATTCCTTCACCAACAC 57.916 37.500 0.00 0.00 0.00 3.32
1829 2193 2.092375 TCGCAAGAGAGGGAGTATCAGA 60.092 50.000 0.00 0.00 45.01 3.27
1995 2359 5.474532 AGCACAAGTGATCAAAGCTCAATTA 59.525 36.000 4.04 0.00 30.49 1.40
2121 2490 7.778470 AGAAATGATGAGTTAAAGGTCGATC 57.222 36.000 0.00 0.00 0.00 3.69
2122 2491 8.567285 AAAGAAATGATGAGTTAAAGGTCGAT 57.433 30.769 0.00 0.00 0.00 3.59
2123 2492 7.979444 AAAGAAATGATGAGTTAAAGGTCGA 57.021 32.000 0.00 0.00 0.00 4.20
2124 2493 8.507249 AGAAAAGAAATGATGAGTTAAAGGTCG 58.493 33.333 0.00 0.00 0.00 4.79
2147 2516 7.282585 ACTATATATTGTTCTGGCAGCAAGAA 58.717 34.615 8.30 8.30 0.00 2.52
2148 2517 6.830912 ACTATATATTGTTCTGGCAGCAAGA 58.169 36.000 10.34 7.13 0.00 3.02
2149 2518 7.118390 GGTACTATATATTGTTCTGGCAGCAAG 59.882 40.741 10.34 0.00 0.00 4.01
2150 2519 6.934645 GGTACTATATATTGTTCTGGCAGCAA 59.065 38.462 10.34 9.84 0.00 3.91
2151 2520 6.042666 TGGTACTATATATTGTTCTGGCAGCA 59.957 38.462 10.34 0.00 0.00 4.41
2192 2564 2.026641 CCGACCCAAGATGCATCAAAT 58.973 47.619 27.81 11.30 0.00 2.32
2206 2578 1.134521 TCTTACATGCATGACCGACCC 60.135 52.381 32.75 0.00 0.00 4.46
2268 2641 1.142097 GGAGGAGGTACGAGCAAGC 59.858 63.158 0.00 0.00 0.00 4.01
2291 2664 5.192923 GCTAGAGGGAGATAGGGATAGAGAA 59.807 48.000 0.00 0.00 0.00 2.87
2303 2676 2.959707 CGTGGTAAAGCTAGAGGGAGAT 59.040 50.000 0.00 0.00 0.00 2.75
2341 2714 2.767496 CTGCCCTCCTCCCCTCTG 60.767 72.222 0.00 0.00 0.00 3.35
2508 2891 8.735692 TCATATTCATATCAATGTGTGTGTGT 57.264 30.769 0.00 0.00 34.50 3.72
2562 2949 1.676635 GTCTGCTCTTGGGCATGCA 60.677 57.895 21.36 0.00 41.63 3.96
2563 2950 2.758089 CGTCTGCTCTTGGGCATGC 61.758 63.158 9.90 9.90 41.63 4.06
2564 2951 2.110967 CCGTCTGCTCTTGGGCATG 61.111 63.158 0.00 0.00 41.63 4.06
2565 2952 2.270205 CCGTCTGCTCTTGGGCAT 59.730 61.111 0.00 0.00 41.63 4.40
2585 2972 3.440415 GGCTTGTACTTGCCGGCC 61.440 66.667 26.77 8.57 39.71 6.13
2600 2987 7.597743 CCTTAATTATTGAGAAATGATGCAGGC 59.402 37.037 0.00 0.00 0.00 4.85
2714 3101 6.380190 GTCTACGAGACGGAGCAATAAATAT 58.620 40.000 0.00 0.00 37.78 1.28
2724 3111 0.675837 TGGTGGTCTACGAGACGGAG 60.676 60.000 0.00 0.00 45.96 4.63
2746 3133 3.241995 CGGTATTAAAGTCGAAGCTGTGC 60.242 47.826 0.00 0.00 0.00 4.57
2751 3138 4.027050 GTGTAGCGGTATTAAAGTCGAAGC 60.027 45.833 0.00 0.00 0.00 3.86
2755 3142 3.242248 GCAGTGTAGCGGTATTAAAGTCG 59.758 47.826 0.00 0.00 0.00 4.18
2767 3154 0.747255 ATAGGGTCAGCAGTGTAGCG 59.253 55.000 0.00 0.00 40.15 4.26
2768 3155 1.757118 TGATAGGGTCAGCAGTGTAGC 59.243 52.381 0.00 0.00 31.80 3.58
2779 3169 7.755822 CGTAGCTGACTAAATAATGATAGGGTC 59.244 40.741 0.00 0.00 0.00 4.46
2781 3171 7.827701 TCGTAGCTGACTAAATAATGATAGGG 58.172 38.462 0.00 0.00 0.00 3.53
2786 3176 8.217131 TGTACTCGTAGCTGACTAAATAATGA 57.783 34.615 0.00 0.00 0.00 2.57
2821 3469 8.523658 TCGCTGATACACTAGAAAGCATATAAT 58.476 33.333 0.00 0.00 0.00 1.28
2822 3470 7.882179 TCGCTGATACACTAGAAAGCATATAA 58.118 34.615 0.00 0.00 0.00 0.98
2823 3471 7.175119 ACTCGCTGATACACTAGAAAGCATATA 59.825 37.037 0.00 0.00 0.00 0.86
2824 3472 6.015856 ACTCGCTGATACACTAGAAAGCATAT 60.016 38.462 0.00 0.00 0.00 1.78
2828 3476 4.035278 ACTCGCTGATACACTAGAAAGC 57.965 45.455 0.00 0.00 0.00 3.51
2830 3478 5.878669 TCAGTACTCGCTGATACACTAGAAA 59.121 40.000 0.00 0.00 40.23 2.52
2831 3479 5.425630 TCAGTACTCGCTGATACACTAGAA 58.574 41.667 0.00 0.00 40.23 2.10
2851 3499 5.163844 CTGCAAGACAATCAACTGAGATCAG 60.164 44.000 8.30 8.30 43.28 2.90
2853 3501 4.934001 TCTGCAAGACAATCAACTGAGATC 59.066 41.667 0.00 0.00 38.67 2.75
2855 3503 4.341366 TCTGCAAGACAATCAACTGAGA 57.659 40.909 0.00 0.00 38.67 3.27
2968 3616 2.287909 GGATGTCGAGATGCCAGTAGTC 60.288 54.545 0.00 0.00 0.00 2.59
2978 3626 1.753649 CTGTCACTGGGATGTCGAGAT 59.246 52.381 0.00 0.00 0.00 2.75
2984 3632 0.979665 CCTGTCTGTCACTGGGATGT 59.020 55.000 0.00 0.00 39.86 3.06
2985 3633 0.392193 GCCTGTCTGTCACTGGGATG 60.392 60.000 0.50 0.00 43.04 3.51
3003 3651 1.688772 ATCCCATGCTGAATCTGTGC 58.311 50.000 0.00 0.00 0.00 4.57
3011 3659 1.839354 TCACTGCTAATCCCATGCTGA 59.161 47.619 0.00 0.00 0.00 4.26
3012 3660 2.219458 CTCACTGCTAATCCCATGCTG 58.781 52.381 0.00 0.00 0.00 4.41
3018 3669 5.283457 ACATTCTACTCACTGCTAATCCC 57.717 43.478 0.00 0.00 0.00 3.85
3219 4001 4.084328 GCTAGCTATAGAAATGGCGTTGTG 60.084 45.833 7.70 0.00 43.90 3.33
3231 4013 2.953284 ACACGGGAGCTAGCTATAGA 57.047 50.000 19.38 0.00 0.00 1.98
3235 4017 2.431954 ACTAACACGGGAGCTAGCTA 57.568 50.000 19.38 0.00 0.00 3.32
3236 4018 2.022934 GTACTAACACGGGAGCTAGCT 58.977 52.381 19.45 19.45 0.00 3.32
3244 4026 1.457346 ACGAGGAGTACTAACACGGG 58.543 55.000 16.85 0.00 0.00 5.28
3282 4064 7.177878 TCTCTCATGTGATATGGAGTAGCATA 58.822 38.462 0.00 0.00 30.31 3.14
3288 4070 5.453057 GCTGTTCTCTCATGTGATATGGAGT 60.453 44.000 0.00 0.00 0.00 3.85
3291 4073 4.510711 GTGCTGTTCTCTCATGTGATATGG 59.489 45.833 0.00 0.00 0.00 2.74
3311 4094 3.270027 TGTGTATGATTAGGTGCTGTGC 58.730 45.455 0.00 0.00 0.00 4.57
3326 4109 9.905713 ACTGATGGAATTGTACTATTTGTGTAT 57.094 29.630 4.03 0.00 0.00 2.29
3332 4115 8.877864 TGGAAACTGATGGAATTGTACTATTT 57.122 30.769 4.03 0.00 0.00 1.40
3333 4116 8.109634 ACTGGAAACTGATGGAATTGTACTATT 58.890 33.333 2.00 2.00 0.00 1.73
3334 4117 7.554118 CACTGGAAACTGATGGAATTGTACTAT 59.446 37.037 0.00 0.00 0.00 2.12
3337 4120 5.619981 GCACTGGAAACTGATGGAATTGTAC 60.620 44.000 0.00 0.00 0.00 2.90
3340 4123 3.256383 TGCACTGGAAACTGATGGAATTG 59.744 43.478 0.00 0.00 0.00 2.32
3347 4130 0.606401 CCGGTGCACTGGAAACTGAT 60.606 55.000 37.13 0.00 45.36 2.90
3421 4206 4.415512 CCATAATTGTAGGAAGGGAAGGGA 59.584 45.833 0.00 0.00 0.00 4.20
3528 4313 4.511527 CAGCAGTGTGGAGTAATTCTGAT 58.488 43.478 0.00 0.00 0.00 2.90
3607 4392 9.645059 TCTCACAAGAATGTTTAGATAGACTTG 57.355 33.333 0.00 0.00 37.82 3.16
3691 4571 3.134804 AGCGCTCTACAGGAAATTACCAT 59.865 43.478 2.64 0.00 0.00 3.55
3876 4766 9.736414 ACCCTCTTCAGATCAATTATATCATTG 57.264 33.333 3.60 3.60 35.73 2.82
4187 5086 8.535335 CAAGATTCCATGGTAGTGCTACTATAT 58.465 37.037 12.58 0.13 35.47 0.86
4188 5087 7.728532 TCAAGATTCCATGGTAGTGCTACTATA 59.271 37.037 12.58 0.00 35.47 1.31
4257 5158 8.982685 CACGCAAGAGAGATTAATTGTGTATAT 58.017 33.333 3.01 0.00 42.66 0.86
4310 5211 8.917415 ATGCGATTGTACATACATACAGATAG 57.083 34.615 0.00 0.00 36.45 2.08
4383 5284 0.458543 CGTGCAGAGTCCGCAAGTAT 60.459 55.000 1.75 0.00 41.97 2.12
4442 5349 2.315176 CTCACTCCTCTCCTACATGGG 58.685 57.143 0.00 0.00 36.20 4.00
4484 5391 5.528690 CACATCATATGTTCTCCGGTCATTT 59.471 40.000 0.00 0.00 42.70 2.32
4506 5413 0.385473 GTGCGCACAACCACATACAC 60.385 55.000 34.52 2.48 32.37 2.90
4606 5513 6.325919 TGGAGGTAAAAAGCTGTGTAATTG 57.674 37.500 0.00 0.00 0.00 2.32
4629 5536 5.449553 CTGGCTTTATCAGAGGGGTTAATT 58.550 41.667 0.00 0.00 34.36 1.40
4669 5584 6.263168 AGTCCAACTTTTCACTGTTAAGATGG 59.737 38.462 13.00 13.00 40.92 3.51
4693 5608 1.573829 TAGGGAACAAAGCGCGCAAG 61.574 55.000 35.10 23.70 43.44 4.01
4743 6117 5.576563 TTTCTTCAGTGGGAGTCCATTTA 57.423 39.130 12.30 0.00 46.09 1.40
4871 6287 2.158971 GCACCAGCAAAAGGAAGGAAAA 60.159 45.455 0.00 0.00 41.58 2.29
5162 6603 7.356641 TCAGATTAAATAGATTGCGATCTGC 57.643 36.000 24.39 6.74 42.55 4.26
5198 6639 1.195900 GCACGTCCTGCGATTGTAAAA 59.804 47.619 0.00 0.00 44.77 1.52
5260 6701 1.079405 GGAACGGAGCCGACATCAA 60.079 57.895 16.83 0.00 42.83 2.57
5292 6733 0.878961 GTTTCTTGGTGCCGACGACT 60.879 55.000 0.00 0.00 0.00 4.18
5302 6743 2.372172 AGTCCAGATTCGGTTTCTTGGT 59.628 45.455 0.00 0.00 0.00 3.67
5365 6810 0.828022 ATATCTTCCGTTGCCGTCCA 59.172 50.000 0.00 0.00 0.00 4.02
5368 6813 1.151777 CGCATATCTTCCGTTGCCGT 61.152 55.000 0.00 0.00 0.00 5.68
5411 6856 8.685427 CATCTGATGATTAATCTCTAGATCGGT 58.315 37.037 16.24 4.64 36.15 4.69
5412 6857 7.648908 GCATCTGATGATTAATCTCTAGATCGG 59.351 40.741 21.30 13.94 36.15 4.18
5413 6858 8.189460 TGCATCTGATGATTAATCTCTAGATCG 58.811 37.037 21.30 14.37 36.15 3.69
5496 6941 1.215673 TCATCTCCTAGCTCCGGTTCT 59.784 52.381 0.00 2.02 0.00 3.01
5502 6947 2.697751 TGCTTTCTCATCTCCTAGCTCC 59.302 50.000 0.00 0.00 0.00 4.70
5685 7139 0.251033 AGCTTGTTGCATGCTCCTGA 60.251 50.000 20.33 0.00 40.06 3.86
5758 7213 4.310769 ACACACACTCTTCAAGCTACATC 58.689 43.478 0.00 0.00 0.00 3.06
5759 7214 4.342862 ACACACACTCTTCAAGCTACAT 57.657 40.909 0.00 0.00 0.00 2.29
5760 7215 3.819564 ACACACACTCTTCAAGCTACA 57.180 42.857 0.00 0.00 0.00 2.74
5761 7216 5.119279 CACATACACACACTCTTCAAGCTAC 59.881 44.000 0.00 0.00 0.00 3.58
5762 7217 5.221441 ACACATACACACACTCTTCAAGCTA 60.221 40.000 0.00 0.00 0.00 3.32
5802 7271 1.300481 CTGTCTCATCAGGCAGCATG 58.700 55.000 0.00 0.00 45.37 4.06
5803 7272 3.782632 CTGTCTCATCAGGCAGCAT 57.217 52.632 0.00 0.00 45.37 3.79
5912 7382 2.303163 TGCATGGTCCATACGTACAC 57.697 50.000 3.38 0.00 0.00 2.90
5975 7445 4.009675 CAGCTAGCTAGGAGATAGGAGTG 58.990 52.174 18.86 0.00 34.92 3.51
6121 7591 8.902540 TTGGTAGACATATGATCAAACATACC 57.097 34.615 10.38 8.60 35.91 2.73
6157 7627 3.251729 TCGATGTGGCGGTAGAAGTATAC 59.748 47.826 0.00 0.00 0.00 1.47
6165 7635 0.318441 ATCCATCGATGTGGCGGTAG 59.682 55.000 23.27 6.20 39.19 3.18
6196 7666 7.565398 TGGGGGCTAGCTATTTAGATATAGAAG 59.435 40.741 15.72 0.00 31.10 2.85
6197 7667 7.344871 GTGGGGGCTAGCTATTTAGATATAGAA 59.655 40.741 15.72 0.00 31.10 2.10
6198 7668 6.839657 GTGGGGGCTAGCTATTTAGATATAGA 59.160 42.308 15.72 0.00 31.10 1.98
6199 7669 6.841755 AGTGGGGGCTAGCTATTTAGATATAG 59.158 42.308 15.72 0.00 0.00 1.31
6200 7670 6.753134 AGTGGGGGCTAGCTATTTAGATATA 58.247 40.000 15.72 0.00 0.00 0.86
6201 7671 5.604752 AGTGGGGGCTAGCTATTTAGATAT 58.395 41.667 15.72 0.00 0.00 1.63
6202 7672 5.024803 AGTGGGGGCTAGCTATTTAGATA 57.975 43.478 15.72 0.00 0.00 1.98
6203 7673 3.875571 AGTGGGGGCTAGCTATTTAGAT 58.124 45.455 15.72 0.00 0.00 1.98
6204 7674 3.346146 AGTGGGGGCTAGCTATTTAGA 57.654 47.619 15.72 0.00 0.00 2.10
6205 7675 4.347000 TGTTAGTGGGGGCTAGCTATTTAG 59.653 45.833 15.72 0.00 0.00 1.85
6206 7676 4.300345 TGTTAGTGGGGGCTAGCTATTTA 58.700 43.478 15.72 0.00 0.00 1.40
6207 7677 3.120108 TGTTAGTGGGGGCTAGCTATTT 58.880 45.455 15.72 0.00 0.00 1.40
6208 7678 2.771688 TGTTAGTGGGGGCTAGCTATT 58.228 47.619 15.72 0.00 0.00 1.73
6209 7679 2.489528 TGTTAGTGGGGGCTAGCTAT 57.510 50.000 15.72 0.00 0.00 2.97
6210 7680 2.489528 ATGTTAGTGGGGGCTAGCTA 57.510 50.000 15.72 0.00 0.00 3.32
6211 7681 2.489528 TATGTTAGTGGGGGCTAGCT 57.510 50.000 15.72 0.00 0.00 3.32
6212 7682 3.790089 AATATGTTAGTGGGGGCTAGC 57.210 47.619 6.04 6.04 0.00 3.42
6213 7683 5.308237 AGAGAAATATGTTAGTGGGGGCTAG 59.692 44.000 0.00 0.00 0.00 3.42
6214 7684 5.224441 AGAGAAATATGTTAGTGGGGGCTA 58.776 41.667 0.00 0.00 0.00 3.93
6215 7685 4.047883 AGAGAAATATGTTAGTGGGGGCT 58.952 43.478 0.00 0.00 0.00 5.19
6216 7686 4.141482 TGAGAGAAATATGTTAGTGGGGGC 60.141 45.833 0.00 0.00 0.00 5.80
6217 7687 5.630415 TGAGAGAAATATGTTAGTGGGGG 57.370 43.478 0.00 0.00 0.00 5.40
6218 7688 6.414732 TGTTGAGAGAAATATGTTAGTGGGG 58.585 40.000 0.00 0.00 0.00 4.96
6219 7689 7.467811 GCATGTTGAGAGAAATATGTTAGTGGG 60.468 40.741 0.00 0.00 32.83 4.61
6220 7690 7.066163 TGCATGTTGAGAGAAATATGTTAGTGG 59.934 37.037 0.00 0.00 32.83 4.00
6221 7691 7.977904 TGCATGTTGAGAGAAATATGTTAGTG 58.022 34.615 0.00 0.00 32.83 2.74
6222 7692 8.565896 TTGCATGTTGAGAGAAATATGTTAGT 57.434 30.769 0.00 0.00 32.83 2.24
6223 7693 7.642978 GCTTGCATGTTGAGAGAAATATGTTAG 59.357 37.037 1.14 0.00 32.83 2.34
6224 7694 7.121020 TGCTTGCATGTTGAGAGAAATATGTTA 59.879 33.333 1.14 0.00 32.83 2.41
6225 7695 6.071784 TGCTTGCATGTTGAGAGAAATATGTT 60.072 34.615 1.14 0.00 32.83 2.71
6226 7696 5.416639 TGCTTGCATGTTGAGAGAAATATGT 59.583 36.000 1.14 0.00 32.83 2.29
6227 7697 5.886992 TGCTTGCATGTTGAGAGAAATATG 58.113 37.500 1.14 0.00 33.25 1.78
6228 7698 6.504398 CATGCTTGCATGTTGAGAGAAATAT 58.496 36.000 23.00 0.00 0.00 1.28
6229 7699 5.886992 CATGCTTGCATGTTGAGAGAAATA 58.113 37.500 23.00 0.00 0.00 1.40
6230 7700 4.744570 CATGCTTGCATGTTGAGAGAAAT 58.255 39.130 23.00 0.00 0.00 2.17
6231 7701 4.168922 CATGCTTGCATGTTGAGAGAAA 57.831 40.909 23.00 0.00 0.00 2.52
6232 7702 3.842732 CATGCTTGCATGTTGAGAGAA 57.157 42.857 23.00 0.00 0.00 2.87
6245 7715 2.809446 CTTGATGATGTGGCATGCTTG 58.191 47.619 18.92 0.00 0.00 4.01
6246 7716 1.136305 GCTTGATGATGTGGCATGCTT 59.864 47.619 18.92 0.00 32.10 3.91
6247 7717 0.744874 GCTTGATGATGTGGCATGCT 59.255 50.000 18.92 0.00 32.10 3.79
6248 7718 0.458260 TGCTTGATGATGTGGCATGC 59.542 50.000 9.90 9.90 34.46 4.06
6249 7719 2.094442 TGTTGCTTGATGATGTGGCATG 60.094 45.455 0.00 0.00 32.87 4.06
6250 7720 2.172679 TGTTGCTTGATGATGTGGCAT 58.827 42.857 0.00 0.00 32.87 4.40
6251 7721 1.618487 TGTTGCTTGATGATGTGGCA 58.382 45.000 0.00 0.00 0.00 4.92
6252 7722 2.536365 CATGTTGCTTGATGATGTGGC 58.464 47.619 0.00 0.00 0.00 5.01
6253 7723 2.094442 TGCATGTTGCTTGATGATGTGG 60.094 45.455 0.75 0.00 45.31 4.17
6254 7724 3.224884 TGCATGTTGCTTGATGATGTG 57.775 42.857 0.75 0.00 45.31 3.21
6262 7732 1.514003 TTTGCCATGCATGTTGCTTG 58.486 45.000 24.58 9.73 45.31 4.01
6263 7733 2.147958 CTTTTGCCATGCATGTTGCTT 58.852 42.857 24.58 0.00 45.31 3.91
6264 7734 1.345089 TCTTTTGCCATGCATGTTGCT 59.655 42.857 24.58 0.00 45.31 3.91
6265 7735 1.461897 GTCTTTTGCCATGCATGTTGC 59.538 47.619 24.58 20.96 45.29 4.17
6266 7736 2.070783 GGTCTTTTGCCATGCATGTTG 58.929 47.619 24.58 11.90 38.76 3.33
6267 7737 1.002315 GGGTCTTTTGCCATGCATGTT 59.998 47.619 24.58 0.00 38.76 2.71
6268 7738 0.609662 GGGTCTTTTGCCATGCATGT 59.390 50.000 24.58 0.00 38.76 3.21
6269 7739 0.609151 TGGGTCTTTTGCCATGCATG 59.391 50.000 20.19 20.19 38.76 4.06
6270 7740 1.483415 GATGGGTCTTTTGCCATGCAT 59.517 47.619 0.00 0.00 38.76 3.96
6271 7741 0.896923 GATGGGTCTTTTGCCATGCA 59.103 50.000 0.00 0.00 36.47 3.96
6272 7742 0.896923 TGATGGGTCTTTTGCCATGC 59.103 50.000 0.00 0.00 0.00 4.06
6273 7743 1.894466 TGTGATGGGTCTTTTGCCATG 59.106 47.619 0.00 0.00 0.00 3.66
6274 7744 2.307496 TGTGATGGGTCTTTTGCCAT 57.693 45.000 0.00 0.00 0.00 4.40
6275 7745 2.079170 TTGTGATGGGTCTTTTGCCA 57.921 45.000 0.00 0.00 0.00 4.92
6276 7746 3.006752 TGAATTGTGATGGGTCTTTTGCC 59.993 43.478 0.00 0.00 0.00 4.52
6277 7747 3.989817 GTGAATTGTGATGGGTCTTTTGC 59.010 43.478 0.00 0.00 0.00 3.68
6278 7748 5.199024 TGTGAATTGTGATGGGTCTTTTG 57.801 39.130 0.00 0.00 0.00 2.44
6279 7749 5.128499 TGTTGTGAATTGTGATGGGTCTTTT 59.872 36.000 0.00 0.00 0.00 2.27
6280 7750 4.648762 TGTTGTGAATTGTGATGGGTCTTT 59.351 37.500 0.00 0.00 0.00 2.52
6281 7751 4.214310 TGTTGTGAATTGTGATGGGTCTT 58.786 39.130 0.00 0.00 0.00 3.01
6282 7752 3.831323 TGTTGTGAATTGTGATGGGTCT 58.169 40.909 0.00 0.00 0.00 3.85
6283 7753 4.487948 CATGTTGTGAATTGTGATGGGTC 58.512 43.478 0.00 0.00 0.00 4.46
6284 7754 3.306225 GCATGTTGTGAATTGTGATGGGT 60.306 43.478 0.00 0.00 0.00 4.51
6285 7755 3.255725 GCATGTTGTGAATTGTGATGGG 58.744 45.455 0.00 0.00 0.00 4.00
6286 7756 3.915536 TGCATGTTGTGAATTGTGATGG 58.084 40.909 0.00 0.00 0.00 3.51
6287 7757 5.635700 TGAATGCATGTTGTGAATTGTGATG 59.364 36.000 0.00 0.00 36.14 3.07
6288 7758 5.785243 TGAATGCATGTTGTGAATTGTGAT 58.215 33.333 0.00 0.00 36.14 3.06
6289 7759 5.197682 TGAATGCATGTTGTGAATTGTGA 57.802 34.783 0.00 0.00 36.14 3.58
6290 7760 5.853081 CATGAATGCATGTTGTGAATTGTG 58.147 37.500 5.39 0.00 45.41 3.33
6314 7784 4.037803 TGTTGAGGTGGACATTTTCATGTG 59.962 41.667 0.00 0.00 44.22 3.21
6316 7786 4.852134 TGTTGAGGTGGACATTTTCATG 57.148 40.909 0.00 0.00 36.34 3.07
6317 7787 4.322198 GCATGTTGAGGTGGACATTTTCAT 60.322 41.667 0.00 0.00 34.42 2.57
6318 7788 3.005684 GCATGTTGAGGTGGACATTTTCA 59.994 43.478 0.00 0.00 34.42 2.69
6319 7789 3.005684 TGCATGTTGAGGTGGACATTTTC 59.994 43.478 0.00 0.00 34.42 2.29
6320 7790 2.964464 TGCATGTTGAGGTGGACATTTT 59.036 40.909 0.00 0.00 34.42 1.82
6321 7791 2.596346 TGCATGTTGAGGTGGACATTT 58.404 42.857 0.00 0.00 34.42 2.32
6322 7792 2.291209 TGCATGTTGAGGTGGACATT 57.709 45.000 0.00 0.00 34.42 2.71
6323 7793 2.291209 TTGCATGTTGAGGTGGACAT 57.709 45.000 0.00 0.00 36.97 3.06
6324 7794 2.064434 TTTGCATGTTGAGGTGGACA 57.936 45.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.