Multiple sequence alignment - TraesCS6A01G265800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G265800 chr6A 100.000 7606 0 0 1 7606 490501170 490493565 0.000000e+00 14046.0
1 TraesCS6A01G265800 chr6A 82.063 1299 184 32 5343 6620 490837621 490836351 0.000000e+00 1062.0
2 TraesCS6A01G265800 chr6A 90.385 520 50 0 998 1517 490840957 490840438 0.000000e+00 684.0
3 TraesCS6A01G265800 chr6A 93.846 130 8 0 1613 1742 490840336 490840207 6.020000e-46 196.0
4 TraesCS6A01G265800 chr6D 95.148 3071 99 20 4492 7543 352354446 352357485 0.000000e+00 4800.0
5 TraesCS6A01G265800 chr6D 92.308 2418 109 29 347 2730 352350861 352353235 0.000000e+00 3363.0
6 TraesCS6A01G265800 chr6D 80.936 2030 314 57 4609 6620 352152107 352154081 0.000000e+00 1537.0
7 TraesCS6A01G265800 chr6D 91.325 830 50 11 2928 3748 352353242 352354058 0.000000e+00 1114.0
8 TraesCS6A01G265800 chr6D 90.170 529 43 4 998 1517 352149382 352149910 0.000000e+00 680.0
9 TraesCS6A01G265800 chr6D 76.812 483 75 16 144 594 428482798 428483275 3.550000e-58 237.0
10 TraesCS6A01G265800 chr6D 93.750 160 3 2 4066 4225 352354181 352354333 4.590000e-57 233.0
11 TraesCS6A01G265800 chr6D 95.070 142 7 0 1 142 128262773 128262914 2.760000e-54 224.0
12 TraesCS6A01G265800 chr6D 84.158 202 28 4 1613 1812 352149980 352150179 7.790000e-45 193.0
13 TraesCS6A01G265800 chr6D 92.958 71 3 2 3898 3967 352354057 352354126 1.350000e-17 102.0
14 TraesCS6A01G265800 chr6D 100.000 44 0 0 7559 7602 352357479 352357522 1.760000e-11 82.4
15 TraesCS6A01G265800 chr6D 84.615 65 1 1 4008 4072 352354121 352354176 1.000000e-03 56.5
16 TraesCS6A01G265800 chr6B 94.373 3110 116 20 4518 7606 526721684 526718613 0.000000e+00 4719.0
17 TraesCS6A01G265800 chr6B 89.573 1592 105 32 1853 3416 526724275 526722717 0.000000e+00 1964.0
18 TraesCS6A01G265800 chr6B 93.509 1217 55 14 608 1814 526725479 526724277 0.000000e+00 1788.0
19 TraesCS6A01G265800 chr6B 81.263 1996 298 44 4640 6613 526738541 526736600 0.000000e+00 1544.0
20 TraesCS6A01G265800 chr6B 86.016 758 82 18 998 1742 526742218 526741472 0.000000e+00 791.0
21 TraesCS6A01G265800 chr6B 88.168 524 28 10 3710 4225 526722323 526721826 1.830000e-165 593.0
22 TraesCS6A01G265800 chr6B 84.829 468 55 5 143 594 526728259 526727792 2.500000e-124 457.0
23 TraesCS6A01G265800 chr6B 94.595 148 7 1 1 148 649715073 649714927 2.140000e-55 228.0
24 TraesCS6A01G265800 chr6B 95.105 143 7 0 1 143 222699861 222700003 7.680000e-55 226.0
25 TraesCS6A01G265800 chr6B 90.076 131 12 1 3477 3606 526722473 526722343 1.310000e-37 169.0
26 TraesCS6A01G265800 chr2A 88.479 2222 188 34 4525 6718 763367281 763369462 0.000000e+00 2623.0
27 TraesCS6A01G265800 chr2A 87.019 701 68 16 1057 1740 763364621 763365315 0.000000e+00 769.0
28 TraesCS6A01G265800 chr2A 80.043 466 76 10 143 594 146346963 146347425 5.690000e-86 329.0
29 TraesCS6A01G265800 chr2A 80.526 190 35 2 5697 5885 694633024 694633212 2.210000e-30 145.0
30 TraesCS6A01G265800 chr2A 87.500 96 12 0 1630 1725 694631624 694631719 2.240000e-20 111.0
31 TraesCS6A01G265800 chr2B 87.523 2220 211 39 4523 6718 797625318 797627495 0.000000e+00 2505.0
32 TraesCS6A01G265800 chr2B 91.880 468 38 0 1050 1517 797622792 797623259 0.000000e+00 654.0
33 TraesCS6A01G265800 chr2B 93.333 150 9 1 1 150 750363416 750363564 3.570000e-53 220.0
34 TraesCS6A01G265800 chrUn 85.455 1375 153 29 5343 6683 84016286 84014925 0.000000e+00 1387.0
35 TraesCS6A01G265800 chrUn 85.486 689 87 7 4558 5237 84017086 84016402 0.000000e+00 706.0
36 TraesCS6A01G265800 chr7D 85.672 1347 150 25 5343 6657 59733574 59732239 0.000000e+00 1378.0
37 TraesCS6A01G265800 chr7D 88.087 596 69 2 4643 5237 59734284 59733690 0.000000e+00 706.0
38 TraesCS6A01G265800 chr7D 90.549 455 29 8 1063 1516 59738521 59738080 2.360000e-164 590.0
39 TraesCS6A01G265800 chr7D 78.282 419 62 13 143 538 136598178 136597766 7.630000e-60 243.0
40 TraesCS6A01G265800 chr7D 94.444 108 6 0 1630 1737 59737966 59737859 4.720000e-37 167.0
41 TraesCS6A01G265800 chr7A 84.755 715 95 5 4528 5236 63874515 63875221 0.000000e+00 704.0
42 TraesCS6A01G265800 chr7A 90.497 463 29 6 1063 1524 63872419 63872867 1.410000e-166 597.0
43 TraesCS6A01G265800 chr2D 79.872 467 77 9 143 594 154611948 154611484 7.360000e-85 326.0
44 TraesCS6A01G265800 chr2D 95.775 142 6 0 1 142 78008422 78008563 5.940000e-56 230.0
45 TraesCS6A01G265800 chr2D 85.859 99 14 0 1627 1725 554475783 554475881 1.040000e-18 106.0
46 TraesCS6A01G265800 chr3A 91.515 165 12 2 1 164 450034323 450034486 7.680000e-55 226.0
47 TraesCS6A01G265800 chr1D 95.070 142 7 0 1 142 285438436 285438577 2.760000e-54 224.0
48 TraesCS6A01G265800 chr1D 93.878 147 9 0 1 147 98939983 98940129 9.930000e-54 222.0
49 TraesCS6A01G265800 chr1B 93.919 148 8 1 1 148 589523707 589523561 9.930000e-54 222.0
50 TraesCS6A01G265800 chr1B 77.064 436 65 14 187 589 309386382 309385949 1.290000e-52 219.0
51 TraesCS6A01G265800 chr7B 79.608 255 45 6 144 394 692335844 692335593 7.840000e-40 176.0
52 TraesCS6A01G265800 chr4A 77.778 117 26 0 479 595 617358447 617358331 1.060000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G265800 chr6A 490493565 490501170 7605 True 14046.000000 14046 100.000000 1 7606 1 chr6A.!!$R1 7605
1 TraesCS6A01G265800 chr6A 490836351 490840957 4606 True 647.333333 1062 88.764667 998 6620 3 chr6A.!!$R2 5622
2 TraesCS6A01G265800 chr6D 352350861 352357522 6661 False 1392.985714 4800 92.872000 347 7602 7 chr6D.!!$F4 7255
3 TraesCS6A01G265800 chr6D 352149382 352154081 4699 False 803.333333 1537 85.088000 998 6620 3 chr6D.!!$F3 5622
4 TraesCS6A01G265800 chr6B 526718613 526728259 9646 True 1615.000000 4719 90.088000 143 7606 6 chr6B.!!$R2 7463
5 TraesCS6A01G265800 chr6B 526736600 526742218 5618 True 1167.500000 1544 83.639500 998 6613 2 chr6B.!!$R3 5615
6 TraesCS6A01G265800 chr2A 763364621 763369462 4841 False 1696.000000 2623 87.749000 1057 6718 2 chr2A.!!$F3 5661
7 TraesCS6A01G265800 chr2B 797622792 797627495 4703 False 1579.500000 2505 89.701500 1050 6718 2 chr2B.!!$F2 5668
8 TraesCS6A01G265800 chrUn 84014925 84017086 2161 True 1046.500000 1387 85.470500 4558 6683 2 chrUn.!!$R1 2125
9 TraesCS6A01G265800 chr7D 59732239 59738521 6282 True 710.250000 1378 89.688000 1063 6657 4 chr7D.!!$R2 5594
10 TraesCS6A01G265800 chr7A 63872419 63875221 2802 False 650.500000 704 87.626000 1063 5236 2 chr7A.!!$F1 4173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.179097 GGCAGACCGAAGACCTCATC 60.179 60.0 0.00 0.0 0.00 2.92 F
382 1610 0.249996 GCAGCAGGGTGTTTTGCAAT 60.250 50.0 0.00 0.0 42.67 3.56 F
2112 5210 0.518636 AAGTTGCGTATGCTGCTGTG 59.481 50.0 8.69 0.0 43.34 3.66 F
2426 6373 0.250038 GCGGATGGATAAGCTGCTGA 60.250 55.0 1.35 0.0 0.00 4.26 F
3637 10222 0.101939 GGTCCGTCGTCAACCTATCC 59.898 60.0 0.00 0.0 0.00 2.59 F
4351 12043 0.170339 GGTAAACAGCCGTGATTGCC 59.830 55.0 0.00 0.0 34.79 4.52 F
4354 12046 0.598065 AAACAGCCGTGATTGCCTTC 59.402 50.0 0.00 0.0 0.00 3.46 F
4921 13453 0.972471 TCTTCAGCCCGCTCATCTCA 60.972 55.0 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 5237 0.815213 GGAGCCAATCATACGCAGCA 60.815 55.000 0.00 0.00 0.00 4.41 R
2261 6207 0.169230 GTCAGTGTCTCGCGAGATGT 59.831 55.000 38.52 23.90 39.97 3.06 R
3274 9365 0.034089 AAGATGGGGCCTTGTGCTAC 60.034 55.000 0.84 0.00 40.92 3.58 R
4331 12023 0.170339 GCAATCACGGCTGTTTACCC 59.830 55.000 0.00 0.00 0.00 3.69 R
5621 14189 3.565307 AGCAGGACAAATGGAGAAACAA 58.435 40.909 0.00 0.00 0.00 2.83 R
5657 14228 4.222810 AGGCTTTTGGTCAGTTTTTCTTGT 59.777 37.500 0.00 0.00 0.00 3.16 R
5676 14263 4.834496 TCTGTCCATCAAATTTGAAAGGCT 59.166 37.500 26.42 10.66 41.13 4.58 R
6727 15358 3.434309 AGAAGCTTTGCTCTCTCTCTCT 58.566 45.455 0.00 0.00 38.25 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.542534 GACACGGTATTTGTTTATGTATCCA 57.457 36.000 0.00 0.00 0.00 3.41
25 26 7.311364 ACACGGTATTTGTTTATGTATCCAC 57.689 36.000 0.00 0.00 0.00 4.02
26 27 6.879993 ACACGGTATTTGTTTATGTATCCACA 59.120 34.615 0.00 0.00 39.52 4.17
27 28 7.148373 ACACGGTATTTGTTTATGTATCCACAC 60.148 37.037 0.00 0.00 37.54 3.82
28 29 6.879993 ACGGTATTTGTTTATGTATCCACACA 59.120 34.615 0.00 0.00 37.54 3.72
29 30 7.554835 ACGGTATTTGTTTATGTATCCACACAT 59.445 33.333 0.00 0.00 41.88 3.21
30 31 8.402472 CGGTATTTGTTTATGTATCCACACATT 58.598 33.333 0.00 0.00 39.77 2.71
45 46 8.940768 ATCCACACATTTATTTAAATTTCCGG 57.059 30.769 5.91 0.00 33.88 5.14
46 47 7.897864 TCCACACATTTATTTAAATTTCCGGT 58.102 30.769 5.91 0.00 33.88 5.28
47 48 8.030106 TCCACACATTTATTTAAATTTCCGGTC 58.970 33.333 5.91 0.00 33.88 4.79
48 49 7.815068 CCACACATTTATTTAAATTTCCGGTCA 59.185 33.333 5.91 0.00 33.88 4.02
49 50 9.197694 CACACATTTATTTAAATTTCCGGTCAA 57.802 29.630 5.91 0.00 33.88 3.18
50 51 9.936759 ACACATTTATTTAAATTTCCGGTCAAT 57.063 25.926 5.91 0.00 33.88 2.57
61 62 6.619801 ATTTCCGGTCAATACAATTCTAGC 57.380 37.500 0.00 0.00 0.00 3.42
62 63 4.746535 TCCGGTCAATACAATTCTAGCA 57.253 40.909 0.00 0.00 0.00 3.49
63 64 5.290493 TCCGGTCAATACAATTCTAGCAT 57.710 39.130 0.00 0.00 0.00 3.79
64 65 5.056480 TCCGGTCAATACAATTCTAGCATG 58.944 41.667 0.00 0.00 0.00 4.06
65 66 5.056480 CCGGTCAATACAATTCTAGCATGA 58.944 41.667 0.00 0.00 0.00 3.07
66 67 5.527214 CCGGTCAATACAATTCTAGCATGAA 59.473 40.000 0.00 0.00 0.00 2.57
67 68 6.205464 CCGGTCAATACAATTCTAGCATGAAT 59.795 38.462 0.00 0.00 38.19 2.57
68 69 7.387673 CCGGTCAATACAATTCTAGCATGAATA 59.612 37.037 0.00 0.00 35.82 1.75
69 70 8.773645 CGGTCAATACAATTCTAGCATGAATAA 58.226 33.333 0.00 0.00 35.82 1.40
130 131 8.561738 ACCATTTTATTATTGTCTATAGGGCG 57.438 34.615 0.00 0.00 0.00 6.13
131 132 8.161425 ACCATTTTATTATTGTCTATAGGGCGT 58.839 33.333 0.00 0.00 0.00 5.68
132 133 9.661563 CCATTTTATTATTGTCTATAGGGCGTA 57.338 33.333 0.00 0.00 0.00 4.42
137 138 9.880157 TTATTATTGTCTATAGGGCGTATTTCC 57.120 33.333 4.88 0.00 0.00 3.13
138 139 5.818678 ATTGTCTATAGGGCGTATTTCCA 57.181 39.130 4.88 0.00 0.00 3.53
139 140 5.818678 TTGTCTATAGGGCGTATTTCCAT 57.181 39.130 4.88 0.00 0.00 3.41
140 141 5.401531 TGTCTATAGGGCGTATTTCCATC 57.598 43.478 4.88 0.00 0.00 3.51
141 142 4.836175 TGTCTATAGGGCGTATTTCCATCA 59.164 41.667 4.88 0.00 0.00 3.07
142 143 5.169295 GTCTATAGGGCGTATTTCCATCAC 58.831 45.833 4.88 0.00 0.00 3.06
143 144 2.519377 TAGGGCGTATTTCCATCACG 57.481 50.000 0.00 0.00 38.66 4.35
144 145 0.828022 AGGGCGTATTTCCATCACGA 59.172 50.000 0.00 0.00 37.89 4.35
145 146 0.935196 GGGCGTATTTCCATCACGAC 59.065 55.000 0.00 0.00 42.98 4.34
146 147 0.935196 GGCGTATTTCCATCACGACC 59.065 55.000 0.00 0.00 37.74 4.79
147 148 0.935196 GCGTATTTCCATCACGACCC 59.065 55.000 0.00 0.00 37.89 4.46
148 149 1.472728 GCGTATTTCCATCACGACCCT 60.473 52.381 0.00 0.00 37.89 4.34
149 150 2.470821 CGTATTTCCATCACGACCCTC 58.529 52.381 0.00 0.00 37.89 4.30
150 151 2.100916 CGTATTTCCATCACGACCCTCT 59.899 50.000 0.00 0.00 37.89 3.69
151 152 2.990066 ATTTCCATCACGACCCTCTC 57.010 50.000 0.00 0.00 0.00 3.20
152 153 1.938585 TTTCCATCACGACCCTCTCT 58.061 50.000 0.00 0.00 0.00 3.10
153 154 1.475403 TTCCATCACGACCCTCTCTC 58.525 55.000 0.00 0.00 0.00 3.20
154 155 0.748367 TCCATCACGACCCTCTCTCG 60.748 60.000 0.00 0.00 37.17 4.04
170 171 0.534412 CTCGTGCTCCATCTCCTTGT 59.466 55.000 0.00 0.00 0.00 3.16
194 195 3.838271 GTCGCCTCTCCATCGGCA 61.838 66.667 0.00 0.00 46.62 5.69
196 197 3.531207 CGCCTCTCCATCGGCAGA 61.531 66.667 0.00 0.00 46.62 4.26
210 211 0.179097 GGCAGACCGAAGACCTCATC 60.179 60.000 0.00 0.00 0.00 2.92
211 212 0.179097 GCAGACCGAAGACCTCATCC 60.179 60.000 0.00 0.00 0.00 3.51
217 218 1.066587 GAAGACCTCATCCGAGCCG 59.933 63.158 0.00 0.00 38.00 5.52
221 222 4.292178 CCTCATCCGAGCCGCCTC 62.292 72.222 0.00 0.00 38.00 4.70
222 223 4.292178 CTCATCCGAGCCGCCTCC 62.292 72.222 0.00 0.00 34.49 4.30
234 235 2.279069 CGCCTCCCGCCAGATCTAT 61.279 63.158 0.00 0.00 0.00 1.98
238 239 2.047844 CCCGCCAGATCTATGCCG 60.048 66.667 10.02 4.80 0.00 5.69
277 278 2.811410 TGCATTGCCTTTTCATCCTCT 58.189 42.857 6.12 0.00 0.00 3.69
283 284 0.396278 CCTTTTCATCCTCTGCCCCC 60.396 60.000 0.00 0.00 0.00 5.40
311 313 4.148825 GACCTCGCCCGCATCTGT 62.149 66.667 0.00 0.00 0.00 3.41
366 1592 6.418819 CCACACTTGATTTTTGTCTTAAGCAG 59.581 38.462 0.00 0.00 0.00 4.24
369 1595 6.143438 CACTTGATTTTTGTCTTAAGCAGCAG 59.857 38.462 0.00 0.00 0.00 4.24
380 1608 1.329171 AAGCAGCAGGGTGTTTTGCA 61.329 50.000 0.00 0.00 42.67 4.08
382 1610 0.249996 GCAGCAGGGTGTTTTGCAAT 60.250 50.000 0.00 0.00 42.67 3.56
476 1714 7.045416 TGTAACTAGACTTCTGTTGCAAAAGA 58.955 34.615 15.62 15.62 34.44 2.52
479 1717 7.659652 ACTAGACTTCTGTTGCAAAAGATAC 57.340 36.000 20.00 13.48 0.00 2.24
546 1784 2.151202 CACACGGCCATCTACAACTTT 58.849 47.619 2.24 0.00 0.00 2.66
565 1803 5.892348 ACTTTATCCAATGGTCAAAGAGGT 58.108 37.500 24.35 9.25 32.86 3.85
576 1814 2.489722 GTCAAAGAGGTGGCCAATCTTC 59.510 50.000 26.61 14.42 32.21 2.87
598 1860 5.916318 TCTAATTTTATCCGTCGGCCTTTA 58.084 37.500 6.34 0.00 0.00 1.85
601 1863 5.684550 ATTTTATCCGTCGGCCTTTATTC 57.315 39.130 6.34 0.00 0.00 1.75
649 2974 7.270047 TGGGTATAAGTATCCTGAACGAAAAG 58.730 38.462 0.00 0.00 31.89 2.27
656 2981 2.073816 TCCTGAACGAAAAGGATTCGC 58.926 47.619 10.20 0.00 44.98 4.70
657 2982 1.130561 CCTGAACGAAAAGGATTCGCC 59.869 52.381 10.20 4.09 44.98 5.54
660 2985 2.619177 TGAACGAAAAGGATTCGCCAAA 59.381 40.909 10.20 0.00 44.98 3.28
665 2990 4.202070 ACGAAAAGGATTCGCCAAAAAGAA 60.202 37.500 10.20 0.00 44.98 2.52
674 2999 4.844998 TCGCCAAAAAGAATGATTCACA 57.155 36.364 8.03 0.00 0.00 3.58
716 3046 5.809001 ACAGCAAGATTCCTGTCAGATTTA 58.191 37.500 0.00 0.00 37.77 1.40
719 3049 7.231317 ACAGCAAGATTCCTGTCAGATTTAAAA 59.769 33.333 0.00 0.00 37.77 1.52
750 3080 5.319453 AGATTCCCGTCTTACGTATATCCA 58.681 41.667 0.00 0.00 40.58 3.41
752 3082 3.415212 TCCCGTCTTACGTATATCCAGG 58.585 50.000 0.00 0.00 40.58 4.45
757 3087 5.182570 CCGTCTTACGTATATCCAGGAATCA 59.817 44.000 0.00 0.00 40.58 2.57
825 3155 1.539827 CCCAAACAATCCGGACAGAAC 59.460 52.381 6.12 0.00 0.00 3.01
951 3284 2.881352 GCAGAGCACGCGTAGTCC 60.881 66.667 13.44 1.21 0.00 3.85
1610 3969 1.683011 CCCGATTTTCTCACCTGGCAT 60.683 52.381 0.00 0.00 0.00 4.40
1611 3970 1.672881 CCGATTTTCTCACCTGGCATC 59.327 52.381 0.00 0.00 0.00 3.91
1850 4411 3.673746 TGCATCGATTTGTTCCGATTC 57.326 42.857 0.00 0.00 42.79 2.52
1876 4437 6.486657 TGGTTGGCATGCTACTAGATTTATTC 59.513 38.462 18.92 0.00 0.00 1.75
1946 4868 3.726291 ACAATTTCACCCGTTTCTTGG 57.274 42.857 0.00 0.00 0.00 3.61
2082 5052 3.378339 GGTGAACCCGATACATAGAACG 58.622 50.000 0.00 0.00 0.00 3.95
2105 5203 4.319549 GGCCTAGAAATAAGTTGCGTATGC 60.320 45.833 0.00 0.00 43.20 3.14
2108 5206 4.278678 AGAAATAAGTTGCGTATGCTGC 57.721 40.909 8.69 0.00 43.34 5.25
2112 5210 0.518636 AAGTTGCGTATGCTGCTGTG 59.481 50.000 8.69 0.00 43.34 3.66
2126 5234 2.919859 CTGCTGTGTTATCACTCGTCAG 59.080 50.000 5.57 4.07 44.14 3.51
2129 5237 3.515630 CTGTGTTATCACTCGTCAGCAT 58.484 45.455 5.57 0.00 44.14 3.79
2131 5239 2.029728 GTGTTATCACTCGTCAGCATGC 59.970 50.000 10.51 10.51 40.98 4.06
2250 6196 5.431420 AATCTGACGAGCATGAGTACTAG 57.569 43.478 0.00 0.00 0.00 2.57
2253 6199 4.809958 TCTGACGAGCATGAGTACTAGTAC 59.190 45.833 23.03 23.03 36.35 2.73
2255 6201 5.910614 TGACGAGCATGAGTACTAGTACTA 58.089 41.667 30.80 20.25 45.63 1.82
2256 6202 6.522946 TGACGAGCATGAGTACTAGTACTAT 58.477 40.000 30.80 21.30 45.63 2.12
2257 6203 6.990939 TGACGAGCATGAGTACTAGTACTATT 59.009 38.462 30.80 19.82 45.63 1.73
2258 6204 8.146412 TGACGAGCATGAGTACTAGTACTATTA 58.854 37.037 30.80 21.21 45.63 0.98
2259 6205 8.309163 ACGAGCATGAGTACTAGTACTATTAC 57.691 38.462 30.80 20.21 45.63 1.89
2260 6206 8.149647 ACGAGCATGAGTACTAGTACTATTACT 58.850 37.037 30.80 25.04 45.63 2.24
2261 6207 9.636879 CGAGCATGAGTACTAGTACTATTACTA 57.363 37.037 30.80 15.58 45.63 1.82
2425 6372 1.233285 GGCGGATGGATAAGCTGCTG 61.233 60.000 1.35 0.00 34.43 4.41
2426 6373 0.250038 GCGGATGGATAAGCTGCTGA 60.250 55.000 1.35 0.00 0.00 4.26
2429 6382 2.289257 CGGATGGATAAGCTGCTGATGA 60.289 50.000 3.68 0.00 0.00 2.92
2446 6399 5.516339 GCTGATGATGATTTAAACCCAAACG 59.484 40.000 0.00 0.00 0.00 3.60
2495 6449 5.460646 TGCAGAAAAATAGTGCTTAGTTGC 58.539 37.500 0.00 0.00 38.09 4.17
2512 6830 1.378531 TGCGCCACTTGGATTATGTC 58.621 50.000 4.18 0.00 37.39 3.06
2535 6853 2.920912 TTTCCGAGCACCGAGGGT 60.921 61.111 0.00 0.00 41.76 4.34
2556 6951 6.532302 AGGGTACGTTTTGTTTTGCTTTTTAG 59.468 34.615 0.00 0.00 0.00 1.85
2559 6954 7.274033 GGTACGTTTTGTTTTGCTTTTTAGACT 59.726 33.333 0.00 0.00 0.00 3.24
2567 6962 8.200364 TGTTTTGCTTTTTAGACTACGTACTT 57.800 30.769 0.00 0.00 0.00 2.24
2637 7039 4.649618 GGCGTTATCTAGGCCGAC 57.350 61.111 0.00 0.00 46.81 4.79
2638 7040 2.039509 GGCGTTATCTAGGCCGACT 58.960 57.895 0.00 0.00 46.81 4.18
2639 7041 0.318784 GGCGTTATCTAGGCCGACTG 60.319 60.000 0.00 0.00 46.81 3.51
2640 7042 0.666913 GCGTTATCTAGGCCGACTGA 59.333 55.000 0.00 0.00 0.00 3.41
2641 7043 1.066605 GCGTTATCTAGGCCGACTGAA 59.933 52.381 0.00 0.00 0.00 3.02
2642 7044 2.288273 GCGTTATCTAGGCCGACTGAAT 60.288 50.000 0.00 0.00 0.00 2.57
2676 7078 0.255890 ACGCATGGGTGGAAAGCTAT 59.744 50.000 15.49 0.00 0.00 2.97
2677 7079 1.488812 ACGCATGGGTGGAAAGCTATA 59.511 47.619 15.49 0.00 0.00 1.31
2740 7142 8.336235 TCCACTCCAAGGATTTATTTGATTAGT 58.664 33.333 0.00 0.00 0.00 2.24
2780 7182 3.740044 AAATTTGATCGTAGTGCCACG 57.260 42.857 0.00 0.00 43.28 4.94
2814 7216 2.851195 CCCTCCAATTATCGAAGGGTG 58.149 52.381 7.79 0.00 41.56 4.61
2815 7217 2.438021 CCCTCCAATTATCGAAGGGTGA 59.562 50.000 7.79 0.00 41.56 4.02
2840 7242 6.756542 ACTTCGGTTCAAAAGATTTTCAAAGG 59.243 34.615 0.00 0.00 0.00 3.11
2858 7260 8.760980 TTCAAAGGAATTTTAGAGGAACTTCA 57.239 30.769 0.00 0.00 41.55 3.02
2861 7263 8.796475 CAAAGGAATTTTAGAGGAACTTCATCA 58.204 33.333 6.24 0.00 41.55 3.07
2875 7277 8.462016 AGGAACTTCATCATTAAGAAATTTCCG 58.538 33.333 14.61 0.00 39.11 4.30
2904 7306 5.725110 AGTTGTCTGATTTGTATGATCGC 57.275 39.130 0.00 0.00 0.00 4.58
2905 7307 4.268644 AGTTGTCTGATTTGTATGATCGCG 59.731 41.667 0.00 0.00 0.00 5.87
2910 7312 4.851558 TCTGATTTGTATGATCGCGATACG 59.148 41.667 23.76 3.25 45.62 3.06
2995 7411 7.227910 TCAAACCCTATTTGAATAATCCTACGC 59.772 37.037 0.00 0.00 35.69 4.42
3088 7509 3.360758 CGTGTCTTTTCCTTTTTATGCGC 59.639 43.478 0.00 0.00 0.00 6.09
3096 7835 5.446143 TTCCTTTTTATGCGCTTTGAGAA 57.554 34.783 9.73 0.00 0.00 2.87
3097 7836 5.643379 TCCTTTTTATGCGCTTTGAGAAT 57.357 34.783 9.73 0.00 0.00 2.40
3098 7837 6.751514 TCCTTTTTATGCGCTTTGAGAATA 57.248 33.333 9.73 0.00 0.00 1.75
3099 7838 6.551736 TCCTTTTTATGCGCTTTGAGAATAC 58.448 36.000 9.73 0.00 0.00 1.89
3107 7846 3.837838 GCGCTTTGAGAATACGTGAATCG 60.838 47.826 0.00 0.00 46.00 3.34
3114 7853 4.033932 TGAGAATACGTGAATCGCAAATGG 59.966 41.667 0.00 0.00 44.19 3.16
3148 7892 4.216257 AGGTTGATGTCGAGGTTTGATTTG 59.784 41.667 0.00 0.00 0.00 2.32
3162 7906 1.273048 TGATTTGGACCAATGCAGTGC 59.727 47.619 9.04 8.58 0.00 4.40
3245 9336 0.459585 CTTTGCCTGCCATGATGCAC 60.460 55.000 0.00 0.00 36.04 4.57
3359 9732 2.239654 CACCTACCATTCACACCCAGAT 59.760 50.000 0.00 0.00 0.00 2.90
3391 9772 2.874709 GCTGAATCTAGTCGGCGTC 58.125 57.895 6.85 0.00 39.98 5.19
3392 9773 0.382515 GCTGAATCTAGTCGGCGTCT 59.617 55.000 11.93 11.93 39.98 4.18
3410 9791 2.033151 GTCTCGTTTAATATGTGGCGCC 60.033 50.000 22.73 22.73 0.00 6.53
3430 10010 3.003173 CCTCCTTGCCTCCACCGA 61.003 66.667 0.00 0.00 0.00 4.69
3433 10013 1.051812 CTCCTTGCCTCCACCGATAT 58.948 55.000 0.00 0.00 0.00 1.63
3459 10039 5.382664 TGTTTCTTTTCCCACTTAGAGGT 57.617 39.130 0.00 0.00 0.00 3.85
3460 10040 5.762279 TGTTTCTTTTCCCACTTAGAGGTT 58.238 37.500 0.00 0.00 0.00 3.50
3461 10041 5.826208 TGTTTCTTTTCCCACTTAGAGGTTC 59.174 40.000 0.00 0.00 0.00 3.62
3462 10042 4.267349 TCTTTTCCCACTTAGAGGTTCG 57.733 45.455 0.00 0.00 0.00 3.95
3469 10049 2.482142 CCACTTAGAGGTTCGGATCAGC 60.482 54.545 0.00 0.00 0.00 4.26
3474 10054 1.910580 GAGGTTCGGATCAGCCCCAA 61.911 60.000 0.00 0.00 0.00 4.12
3475 10055 1.001393 GGTTCGGATCAGCCCCAAA 60.001 57.895 0.00 0.00 0.00 3.28
3533 10113 1.159713 TGACAAGTGACAGCCTTGCG 61.160 55.000 5.87 0.00 42.41 4.85
3555 10139 3.676873 GCTTCAACGGCATCATTCCAAAT 60.677 43.478 0.00 0.00 0.00 2.32
3561 10146 2.799207 CGGCATCATTCCAAATTTCCGG 60.799 50.000 0.00 0.00 0.00 5.14
3570 10155 1.379843 AAATTTCCGGCGGCATCCT 60.380 52.632 23.83 1.97 0.00 3.24
3637 10222 0.101939 GGTCCGTCGTCAACCTATCC 59.898 60.000 0.00 0.00 0.00 2.59
3652 10237 8.519526 GTCAACCTATCCTAGACTAATGATCAG 58.480 40.741 0.09 0.00 0.00 2.90
3706 10291 3.806316 AACCGAATGAAAACACTAGCG 57.194 42.857 0.00 0.00 0.00 4.26
3751 10336 0.668706 CAGTTGGGAGCACGTCTCAG 60.669 60.000 14.26 0.00 43.70 3.35
3753 10338 3.573772 TTGGGAGCACGTCTCAGCG 62.574 63.158 14.26 0.00 43.70 5.18
3920 10521 3.566523 GGAAGTCGTCGTATGATGGATC 58.433 50.000 4.32 1.38 0.00 3.36
4026 10709 3.141398 CACTGCACAGTATTGACACCTT 58.859 45.455 2.38 0.00 40.20 3.50
4105 11070 2.923035 CGTGGTCCAGGTCCAGGT 60.923 66.667 15.22 0.00 36.48 4.00
4225 11917 5.786392 GTCATGCAACGATGACTTAGTTAC 58.214 41.667 10.29 0.00 45.98 2.50
4228 11920 7.435488 GTCATGCAACGATGACTTAGTTACTAT 59.565 37.037 10.29 0.00 45.98 2.12
4239 11931 9.710818 ATGACTTAGTTACTATTACTTCCTCCA 57.289 33.333 0.00 0.00 0.00 3.86
4240 11932 9.710818 TGACTTAGTTACTATTACTTCCTCCAT 57.289 33.333 0.00 0.00 0.00 3.41
4242 11934 9.939424 ACTTAGTTACTATTACTTCCTCCATCT 57.061 33.333 0.00 0.00 0.00 2.90
4244 11936 9.931698 TTAGTTACTATTACTTCCTCCATCTCA 57.068 33.333 0.00 0.00 0.00 3.27
4245 11937 8.840200 AGTTACTATTACTTCCTCCATCTCAA 57.160 34.615 0.00 0.00 0.00 3.02
4249 11941 8.970859 ACTATTACTTCCTCCATCTCAAAATG 57.029 34.615 0.00 0.00 0.00 2.32
4253 11945 9.753674 ATTACTTCCTCCATCTCAAAATGTAAA 57.246 29.630 0.00 0.00 0.00 2.01
4255 11947 7.886338 ACTTCCTCCATCTCAAAATGTAAAAC 58.114 34.615 0.00 0.00 0.00 2.43
4256 11948 6.494893 TCCTCCATCTCAAAATGTAAAACG 57.505 37.500 0.00 0.00 0.00 3.60
4257 11949 6.234920 TCCTCCATCTCAAAATGTAAAACGA 58.765 36.000 0.00 0.00 0.00 3.85
4259 11951 8.044309 TCCTCCATCTCAAAATGTAAAACGATA 58.956 33.333 0.00 0.00 0.00 2.92
4260 11952 8.338259 CCTCCATCTCAAAATGTAAAACGATAG 58.662 37.037 0.00 0.00 46.19 2.08
4279 11971 7.202315 CGATAGTACCAAAGAAACGTCTTAC 57.798 40.000 0.00 0.00 43.59 2.34
4280 11972 6.803320 CGATAGTACCAAAGAAACGTCTTACA 59.197 38.462 0.00 0.00 43.59 2.41
4287 11979 7.193595 ACCAAAGAAACGTCTTACATTTTGAG 58.806 34.615 0.00 0.00 43.59 3.02
4292 11984 9.490379 AAGAAACGTCTTACATTTTGAGACTAT 57.510 29.630 0.00 0.00 42.53 2.12
4309 12001 7.606132 GAGACTATAATAGTGTCGGAAAACG 57.394 40.000 0.00 0.00 38.96 3.60
4315 12007 7.746526 ATAATAGTGTCGGAAAACGTCTTAC 57.253 36.000 0.00 0.00 44.69 2.34
4319 12011 4.446719 AGTGTCGGAAAACGTCTTACATTC 59.553 41.667 0.00 0.00 44.69 2.67
4320 12012 3.742369 TGTCGGAAAACGTCTTACATTCC 59.258 43.478 0.00 0.00 44.69 3.01
4324 12016 3.370061 GGAAAACGTCTTACATTCCGAGG 59.630 47.826 0.00 0.00 31.14 4.63
4328 12020 1.134367 CGTCTTACATTCCGAGGCAGA 59.866 52.381 0.00 0.00 0.00 4.26
4331 12023 0.830648 TTACATTCCGAGGCAGAGGG 59.169 55.000 0.00 0.00 0.00 4.30
4344 12036 1.538135 AGAGGGGGTAAACAGCCGT 60.538 57.895 0.00 0.00 0.00 5.68
4347 12039 1.205460 AGGGGGTAAACAGCCGTGAT 61.205 55.000 0.00 0.00 0.00 3.06
4348 12040 0.323087 GGGGGTAAACAGCCGTGATT 60.323 55.000 0.00 0.00 0.00 2.57
4351 12043 0.170339 GGTAAACAGCCGTGATTGCC 59.830 55.000 0.00 0.00 34.79 4.52
4352 12044 1.165270 GTAAACAGCCGTGATTGCCT 58.835 50.000 0.00 0.00 0.00 4.75
4354 12046 0.598065 AAACAGCCGTGATTGCCTTC 59.402 50.000 0.00 0.00 0.00 3.46
4356 12048 1.741401 CAGCCGTGATTGCCTTCGA 60.741 57.895 0.00 0.00 0.00 3.71
4358 12050 1.134694 GCCGTGATTGCCTTCGAAC 59.865 57.895 0.00 0.00 0.00 3.95
4359 12051 1.298859 GCCGTGATTGCCTTCGAACT 61.299 55.000 0.00 0.00 0.00 3.01
4360 12052 1.156736 CCGTGATTGCCTTCGAACTT 58.843 50.000 0.00 0.00 0.00 2.66
4361 12053 1.128692 CCGTGATTGCCTTCGAACTTC 59.871 52.381 0.00 0.00 0.00 3.01
4411 12633 5.238214 GCTTCCAGTTCTGGCTTATTATCTG 59.762 44.000 13.44 0.00 0.00 2.90
4412 12634 6.560003 TTCCAGTTCTGGCTTATTATCTGA 57.440 37.500 13.44 0.00 0.00 3.27
4413 12635 5.918608 TCCAGTTCTGGCTTATTATCTGAC 58.081 41.667 13.44 0.00 0.00 3.51
4414 12636 5.059833 CCAGTTCTGGCTTATTATCTGACC 58.940 45.833 5.89 0.00 0.00 4.02
4449 12671 5.894807 GATGTAATCCACACTTTTCATGGG 58.105 41.667 0.00 0.00 40.86 4.00
4450 12672 4.085733 TGTAATCCACACTTTTCATGGGG 58.914 43.478 0.00 0.00 42.55 4.96
4453 12675 3.320610 TCCACACTTTTCATGGGGAAA 57.679 42.857 0.00 0.00 46.94 3.13
4454 12676 3.647636 TCCACACTTTTCATGGGGAAAA 58.352 40.909 0.00 2.67 46.94 2.29
4468 12690 8.615878 TCATGGGGAAAAAGTATTGTATATCG 57.384 34.615 0.00 0.00 0.00 2.92
4470 12692 5.766174 TGGGGAAAAAGTATTGTATATCGGC 59.234 40.000 0.00 0.00 0.00 5.54
4509 12731 5.184671 AGGCCGTTTATGTATAGGCTAGTAC 59.815 44.000 0.00 4.11 46.44 2.73
4536 13036 5.451381 CCATCAATGGTGAACTGATGAATGG 60.451 44.000 11.81 0.00 46.14 3.16
4921 13453 0.972471 TCTTCAGCCCGCTCATCTCA 60.972 55.000 0.00 0.00 0.00 3.27
4978 13510 4.006319 ACTTCTGCTTCCTTTATGTGCTC 58.994 43.478 0.00 0.00 0.00 4.26
5290 13850 4.155462 CAGCTCAGCTTTGAATACATGTGT 59.845 41.667 9.11 0.00 36.40 3.72
5619 14187 8.646900 ACCAGGCAAGTTTATTTCAGAATTTTA 58.353 29.630 0.00 0.00 0.00 1.52
5653 14224 5.450137 CCATTTGTCCTGCTCTTTCATGATC 60.450 44.000 0.00 0.00 0.00 2.92
5657 14228 4.958581 TGTCCTGCTCTTTCATGATCTCTA 59.041 41.667 0.00 0.00 0.00 2.43
5676 14263 7.931578 TCTCTACAAGAAAAACTGACCAAAA 57.068 32.000 0.00 0.00 0.00 2.44
5683 14270 5.419542 AGAAAAACTGACCAAAAGCCTTTC 58.580 37.500 0.00 0.00 0.00 2.62
5738 14329 0.107214 CACTGAATACGCCATGGGGT 60.107 55.000 33.84 33.84 43.68 4.95
5907 14504 8.736244 GGTAATTAAACCACTAAATCTGCTCAA 58.264 33.333 0.00 0.00 39.50 3.02
5933 14538 8.044908 AGTTGTAACTTGTAAACAAAGGAGAGA 58.955 33.333 0.00 0.00 35.21 3.10
6622 15241 8.150945 TGTGTTCTAAGCTAAATCTCTTTCACT 58.849 33.333 0.00 0.00 0.00 3.41
6659 15290 7.660617 AGCTACAAGATTAGTCATGATCCATTG 59.339 37.037 0.00 3.02 0.00 2.82
6726 15357 4.085733 TCTCCACCAAAAGAGAGAGAGAG 58.914 47.826 0.00 0.00 34.23 3.20
6727 15358 4.085733 CTCCACCAAAAGAGAGAGAGAGA 58.914 47.826 0.00 0.00 31.43 3.10
6728 15359 4.085733 TCCACCAAAAGAGAGAGAGAGAG 58.914 47.826 0.00 0.00 0.00 3.20
6771 15402 4.890088 AGATGCGTGTAAACTGTAAAGGA 58.110 39.130 0.00 0.00 0.00 3.36
6864 15495 4.548494 CAACACAAATGCATGCTAGTTCA 58.452 39.130 20.33 0.00 0.00 3.18
6881 15519 8.935844 TGCTAGTTCATATAAACTTTGACACTG 58.064 33.333 0.00 0.00 40.01 3.66
6899 15538 5.356426 ACACTGGTTGCAAAAATACCTTTC 58.644 37.500 0.00 0.00 33.05 2.62
6909 15548 6.086871 GCAAAAATACCTTTCAGAGCAGTAC 58.913 40.000 0.00 0.00 0.00 2.73
6910 15549 6.072452 GCAAAAATACCTTTCAGAGCAGTACT 60.072 38.462 0.00 0.00 0.00 2.73
6911 15550 7.301054 CAAAAATACCTTTCAGAGCAGTACTG 58.699 38.462 18.93 18.93 36.80 2.74
6913 15552 5.746990 ATACCTTTCAGAGCAGTACTGTT 57.253 39.130 23.44 18.44 36.81 3.16
6914 15553 3.996480 ACCTTTCAGAGCAGTACTGTTC 58.004 45.455 26.97 26.97 40.50 3.18
6915 15554 3.388024 ACCTTTCAGAGCAGTACTGTTCA 59.612 43.478 32.84 16.67 42.28 3.18
6916 15555 4.040952 ACCTTTCAGAGCAGTACTGTTCAT 59.959 41.667 32.84 19.41 42.28 2.57
6917 15556 4.629200 CCTTTCAGAGCAGTACTGTTCATC 59.371 45.833 32.84 21.04 42.28 2.92
6920 15559 4.082125 TCAGAGCAGTACTGTTCATCTCA 58.918 43.478 32.84 13.68 42.28 3.27
6921 15560 4.524328 TCAGAGCAGTACTGTTCATCTCAA 59.476 41.667 32.84 16.23 42.28 3.02
6922 15561 5.186603 TCAGAGCAGTACTGTTCATCTCAAT 59.813 40.000 32.84 14.14 42.28 2.57
6923 15562 5.873712 CAGAGCAGTACTGTTCATCTCAATT 59.126 40.000 32.84 13.51 42.28 2.32
6924 15563 5.873712 AGAGCAGTACTGTTCATCTCAATTG 59.126 40.000 32.84 0.00 42.28 2.32
6977 15620 5.970317 TTCATCAACAGCATTCAGTGATT 57.030 34.783 0.00 0.00 0.00 2.57
6983 15626 4.325028 ACAGCATTCAGTGATTGCAAAA 57.675 36.364 31.11 2.11 40.15 2.44
6985 15628 5.302360 ACAGCATTCAGTGATTGCAAAATT 58.698 33.333 31.11 14.90 40.15 1.82
7000 15643 5.505286 TGCAAAATTAAACGCACAATTTGG 58.495 33.333 0.78 2.06 35.19 3.28
7001 15644 5.294306 TGCAAAATTAAACGCACAATTTGGA 59.706 32.000 0.78 0.00 35.19 3.53
7002 15645 6.017605 TGCAAAATTAAACGCACAATTTGGAT 60.018 30.769 0.78 0.00 35.19 3.41
7029 15672 5.387279 TGGCGACAATTTTCGTTTCTTATC 58.613 37.500 14.89 0.00 41.26 1.75
7079 15722 4.045104 GTGCATACATAGAGGAACGACTG 58.955 47.826 0.00 0.00 0.00 3.51
7083 15726 1.115467 CATAGAGGAACGACTGGGCT 58.885 55.000 0.00 0.00 0.00 5.19
7086 15729 4.379243 AGGAACGACTGGGCTGCG 62.379 66.667 0.00 0.00 0.00 5.18
7211 15854 0.105401 GAGGAGGTTAGGGCTAGGCT 60.105 60.000 16.80 4.94 0.00 4.58
7213 15856 1.465200 GGAGGTTAGGGCTAGGCTCG 61.465 65.000 16.80 0.00 32.17 5.03
7233 15876 1.483004 GTTCCTTGCTCTCTAGGGGAC 59.517 57.143 0.00 0.00 36.14 4.46
7503 16146 4.856801 CTTCGCCATCCCCCACCG 62.857 72.222 0.00 0.00 0.00 4.94
7549 16198 0.179121 ATGTATCGCGCTGGAACGAA 60.179 50.000 5.56 0.00 42.31 3.85
7551 16200 0.024619 GTATCGCGCTGGAACGAAAC 59.975 55.000 5.56 0.00 42.31 2.78
7554 16203 4.736631 GCGCTGGAACGAAACGCC 62.737 66.667 0.00 0.00 43.58 5.68
7555 16204 4.424430 CGCTGGAACGAAACGCCG 62.424 66.667 0.00 0.00 34.06 6.46
7579 16231 4.504916 CTGTCGCGGCTGGAGGAG 62.505 72.222 13.81 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.542534 TGGATACATAAACAAATACCGTGTC 57.457 36.000 0.00 0.00 46.17 3.67
20 21 8.536175 ACCGGAAATTTAAATAAATGTGTGGAT 58.464 29.630 9.46 0.00 36.14 3.41
21 22 7.897864 ACCGGAAATTTAAATAAATGTGTGGA 58.102 30.769 9.46 0.00 36.14 4.02
22 23 7.815068 TGACCGGAAATTTAAATAAATGTGTGG 59.185 33.333 9.46 1.78 36.14 4.17
23 24 8.749841 TGACCGGAAATTTAAATAAATGTGTG 57.250 30.769 9.46 0.00 36.14 3.82
24 25 9.936759 ATTGACCGGAAATTTAAATAAATGTGT 57.063 25.926 9.46 0.00 36.14 3.72
35 36 8.617809 GCTAGAATTGTATTGACCGGAAATTTA 58.382 33.333 9.46 0.00 0.00 1.40
36 37 7.122055 TGCTAGAATTGTATTGACCGGAAATTT 59.878 33.333 9.46 0.00 0.00 1.82
37 38 6.601613 TGCTAGAATTGTATTGACCGGAAATT 59.398 34.615 9.46 2.31 0.00 1.82
38 39 6.119536 TGCTAGAATTGTATTGACCGGAAAT 58.880 36.000 9.46 10.53 0.00 2.17
39 40 5.492895 TGCTAGAATTGTATTGACCGGAAA 58.507 37.500 9.46 1.81 0.00 3.13
40 41 5.092554 TGCTAGAATTGTATTGACCGGAA 57.907 39.130 9.46 0.00 0.00 4.30
41 42 4.746535 TGCTAGAATTGTATTGACCGGA 57.253 40.909 9.46 0.00 0.00 5.14
42 43 5.056480 TCATGCTAGAATTGTATTGACCGG 58.944 41.667 0.00 0.00 0.00 5.28
43 44 6.603237 TTCATGCTAGAATTGTATTGACCG 57.397 37.500 0.00 0.00 0.00 4.79
104 105 9.010029 CGCCCTATAGACAATAATAAAATGGTT 57.990 33.333 0.00 0.00 0.00 3.67
105 106 8.161425 ACGCCCTATAGACAATAATAAAATGGT 58.839 33.333 0.00 0.00 0.00 3.55
106 107 8.561738 ACGCCCTATAGACAATAATAAAATGG 57.438 34.615 0.00 0.00 0.00 3.16
111 112 9.880157 GGAAATACGCCCTATAGACAATAATAA 57.120 33.333 0.00 0.00 0.00 1.40
112 113 9.038072 TGGAAATACGCCCTATAGACAATAATA 57.962 33.333 0.00 0.00 0.00 0.98
113 114 7.913789 TGGAAATACGCCCTATAGACAATAAT 58.086 34.615 0.00 0.00 0.00 1.28
114 115 7.305813 TGGAAATACGCCCTATAGACAATAA 57.694 36.000 0.00 0.00 0.00 1.40
115 116 6.921486 TGGAAATACGCCCTATAGACAATA 57.079 37.500 0.00 0.00 0.00 1.90
116 117 5.818678 TGGAAATACGCCCTATAGACAAT 57.181 39.130 0.00 0.00 0.00 2.71
117 118 5.305902 TGATGGAAATACGCCCTATAGACAA 59.694 40.000 0.00 0.00 0.00 3.18
118 119 4.836175 TGATGGAAATACGCCCTATAGACA 59.164 41.667 0.00 0.00 0.00 3.41
119 120 5.169295 GTGATGGAAATACGCCCTATAGAC 58.831 45.833 0.00 0.00 0.00 2.59
120 121 4.082408 CGTGATGGAAATACGCCCTATAGA 60.082 45.833 0.00 0.00 0.00 1.98
121 122 4.082408 TCGTGATGGAAATACGCCCTATAG 60.082 45.833 0.00 0.00 37.70 1.31
122 123 3.827876 TCGTGATGGAAATACGCCCTATA 59.172 43.478 0.00 0.00 37.70 1.31
123 124 2.631062 TCGTGATGGAAATACGCCCTAT 59.369 45.455 0.00 0.00 37.70 2.57
124 125 2.033372 TCGTGATGGAAATACGCCCTA 58.967 47.619 0.00 0.00 37.70 3.53
125 126 0.828022 TCGTGATGGAAATACGCCCT 59.172 50.000 0.00 0.00 37.70 5.19
126 127 0.935196 GTCGTGATGGAAATACGCCC 59.065 55.000 0.00 0.00 37.70 6.13
127 128 0.935196 GGTCGTGATGGAAATACGCC 59.065 55.000 0.00 0.00 37.70 5.68
128 129 0.935196 GGGTCGTGATGGAAATACGC 59.065 55.000 0.00 0.00 37.70 4.42
129 130 2.100916 AGAGGGTCGTGATGGAAATACG 59.899 50.000 0.00 0.00 39.04 3.06
130 131 3.385111 AGAGAGGGTCGTGATGGAAATAC 59.615 47.826 0.00 0.00 0.00 1.89
131 132 3.637229 GAGAGAGGGTCGTGATGGAAATA 59.363 47.826 0.00 0.00 0.00 1.40
132 133 2.432510 GAGAGAGGGTCGTGATGGAAAT 59.567 50.000 0.00 0.00 0.00 2.17
133 134 1.825474 GAGAGAGGGTCGTGATGGAAA 59.175 52.381 0.00 0.00 0.00 3.13
134 135 1.475403 GAGAGAGGGTCGTGATGGAA 58.525 55.000 0.00 0.00 0.00 3.53
135 136 0.748367 CGAGAGAGGGTCGTGATGGA 60.748 60.000 0.00 0.00 32.62 3.41
136 137 1.730487 CGAGAGAGGGTCGTGATGG 59.270 63.158 0.00 0.00 32.62 3.51
142 143 2.766400 GGAGCACGAGAGAGGGTCG 61.766 68.421 0.00 0.00 43.25 4.79
143 144 1.040339 ATGGAGCACGAGAGAGGGTC 61.040 60.000 0.00 0.00 36.35 4.46
144 145 1.000993 ATGGAGCACGAGAGAGGGT 59.999 57.895 0.00 0.00 0.00 4.34
145 146 0.754957 AGATGGAGCACGAGAGAGGG 60.755 60.000 0.00 0.00 0.00 4.30
146 147 0.667993 GAGATGGAGCACGAGAGAGG 59.332 60.000 0.00 0.00 0.00 3.69
147 148 0.667993 GGAGATGGAGCACGAGAGAG 59.332 60.000 0.00 0.00 0.00 3.20
148 149 0.257328 AGGAGATGGAGCACGAGAGA 59.743 55.000 0.00 0.00 0.00 3.10
149 150 1.110442 AAGGAGATGGAGCACGAGAG 58.890 55.000 0.00 0.00 0.00 3.20
150 151 0.820226 CAAGGAGATGGAGCACGAGA 59.180 55.000 0.00 0.00 0.00 4.04
151 152 0.534412 ACAAGGAGATGGAGCACGAG 59.466 55.000 0.00 0.00 0.00 4.18
152 153 0.532573 GACAAGGAGATGGAGCACGA 59.467 55.000 0.00 0.00 0.00 4.35
153 154 0.460987 GGACAAGGAGATGGAGCACG 60.461 60.000 0.00 0.00 0.00 5.34
154 155 0.460987 CGGACAAGGAGATGGAGCAC 60.461 60.000 0.00 0.00 0.00 4.40
194 195 0.034380 TCGGATGAGGTCTTCGGTCT 60.034 55.000 0.00 0.00 0.00 3.85
196 197 1.668101 GCTCGGATGAGGTCTTCGGT 61.668 60.000 0.00 0.00 42.79 4.69
199 200 1.066587 CGGCTCGGATGAGGTCTTC 59.933 63.158 0.00 0.00 42.79 2.87
202 203 4.593864 GGCGGCTCGGATGAGGTC 62.594 72.222 0.00 0.00 42.79 3.85
204 205 4.292178 GAGGCGGCTCGGATGAGG 62.292 72.222 24.18 0.00 42.79 3.86
225 226 1.080230 CGGAGCGGCATAGATCTGG 60.080 63.158 5.18 0.00 29.89 3.86
238 239 4.965858 CGTCGATCTCGCCGGAGC 62.966 72.222 5.05 0.00 40.26 4.70
256 257 3.056393 CAGAGGATGAAAAGGCAATGCAA 60.056 43.478 7.79 0.00 0.00 4.08
257 258 2.494471 CAGAGGATGAAAAGGCAATGCA 59.506 45.455 7.79 0.00 0.00 3.96
258 259 2.737679 GCAGAGGATGAAAAGGCAATGC 60.738 50.000 0.00 0.00 0.00 3.56
366 1592 3.005791 AGTCTTATTGCAAAACACCCTGC 59.994 43.478 1.71 0.00 39.09 4.85
369 1595 5.221244 ACAAGAGTCTTATTGCAAAACACCC 60.221 40.000 1.71 0.00 0.00 4.61
380 1608 7.254795 CGAACCTGTTTCAACAAGAGTCTTATT 60.255 37.037 4.74 0.00 38.66 1.40
382 1610 5.522460 CGAACCTGTTTCAACAAGAGTCTTA 59.478 40.000 4.74 0.00 38.66 2.10
546 1784 3.624707 GCCACCTCTTTGACCATTGGATA 60.625 47.826 10.37 0.00 0.00 2.59
565 1803 6.126409 ACGGATAAAATTAGAAGATTGGCCA 58.874 36.000 0.00 0.00 0.00 5.36
570 1808 5.469084 GGCCGACGGATAAAATTAGAAGATT 59.531 40.000 20.50 0.00 0.00 2.40
576 1814 6.796705 ATAAAGGCCGACGGATAAAATTAG 57.203 37.500 20.50 0.00 0.00 1.73
649 2974 5.289434 GTGAATCATTCTTTTTGGCGAATCC 59.711 40.000 0.00 0.00 0.00 3.01
665 2990 9.983804 CTACGTACGTATATGTATGTGAATCAT 57.016 33.333 28.70 11.35 42.82 2.45
674 2999 5.934043 TGCTGTCCTACGTACGTATATGTAT 59.066 40.000 26.98 2.16 33.28 2.29
719 3049 6.178239 CGTAAGACGGGAATCTTGATTTTT 57.822 37.500 0.00 0.00 39.33 1.94
750 3080 7.106239 CCACTTGAAGTTGTATACTGATTCCT 58.894 38.462 4.17 0.00 37.12 3.36
752 3082 6.371548 TGCCACTTGAAGTTGTATACTGATTC 59.628 38.462 4.17 6.09 37.12 2.52
757 3087 4.003648 GCTGCCACTTGAAGTTGTATACT 58.996 43.478 4.17 0.00 39.32 2.12
930 3263 2.430751 TACGCGTGCTCTGCTGTG 60.431 61.111 24.59 0.00 0.00 3.66
1041 3374 1.074850 CTCCTCCTCCTCCCCCTTC 60.075 68.421 0.00 0.00 0.00 3.46
1326 3671 2.266055 GGGTTGAGGCTCCACTCG 59.734 66.667 17.16 0.00 40.39 4.18
1561 3912 5.496133 AGCAATGAAGCAGCTAGTAATTG 57.504 39.130 0.00 5.23 36.73 2.32
1610 3969 4.901849 ACCTAGATCCATTTGATTCCGAGA 59.098 41.667 0.00 0.00 32.41 4.04
1611 3970 4.993584 CACCTAGATCCATTTGATTCCGAG 59.006 45.833 0.00 0.00 32.41 4.63
1823 4384 8.690445 ATCGGAACAAATCGATGCATGTATGC 62.690 42.308 2.46 9.82 44.14 3.14
1825 4386 4.126437 TCGGAACAAATCGATGCATGTAT 58.874 39.130 2.46 0.00 0.00 2.29
1850 4411 2.988010 TCTAGTAGCATGCCAACCAG 57.012 50.000 15.66 11.67 0.00 4.00
2082 5052 4.319549 GCATACGCAACTTATTTCTAGGCC 60.320 45.833 0.00 0.00 38.36 5.19
2112 5210 2.283617 CAGCATGCTGACGAGTGATAAC 59.716 50.000 38.90 0.00 46.30 1.89
2129 5237 0.815213 GGAGCCAATCATACGCAGCA 60.815 55.000 0.00 0.00 0.00 4.41
2131 5239 1.202568 TCTGGAGCCAATCATACGCAG 60.203 52.381 0.00 0.00 0.00 5.18
2135 5243 3.216800 TGCAATCTGGAGCCAATCATAC 58.783 45.455 0.00 0.00 0.00 2.39
2139 5248 2.048444 TCTGCAATCTGGAGCCAATC 57.952 50.000 0.00 0.00 35.65 2.67
2250 6196 6.145209 TGTCTCGCGAGATGTAGTAATAGTAC 59.855 42.308 38.52 21.96 39.97 2.73
2253 6199 5.177881 AGTGTCTCGCGAGATGTAGTAATAG 59.822 44.000 38.52 9.47 39.97 1.73
2254 6200 5.050295 CAGTGTCTCGCGAGATGTAGTAATA 60.050 44.000 38.52 12.37 39.97 0.98
2255 6201 3.878103 AGTGTCTCGCGAGATGTAGTAAT 59.122 43.478 38.52 18.26 39.97 1.89
2256 6202 3.063588 CAGTGTCTCGCGAGATGTAGTAA 59.936 47.826 38.52 13.93 39.97 2.24
2257 6203 2.608090 CAGTGTCTCGCGAGATGTAGTA 59.392 50.000 38.52 19.06 39.97 1.82
2258 6204 1.398739 CAGTGTCTCGCGAGATGTAGT 59.601 52.381 38.52 26.38 39.97 2.73
2259 6205 1.666189 TCAGTGTCTCGCGAGATGTAG 59.334 52.381 38.52 27.41 39.97 2.74
2260 6206 1.397343 GTCAGTGTCTCGCGAGATGTA 59.603 52.381 38.52 25.30 39.97 2.29
2261 6207 0.169230 GTCAGTGTCTCGCGAGATGT 59.831 55.000 38.52 23.90 39.97 3.06
2405 6352 2.320587 GCAGCTTATCCATCCGCCG 61.321 63.158 0.00 0.00 0.00 6.46
2408 6355 2.074576 CATCAGCAGCTTATCCATCCG 58.925 52.381 0.00 0.00 0.00 4.18
2425 6372 6.033966 GGTCGTTTGGGTTTAAATCATCATC 58.966 40.000 0.00 0.00 0.00 2.92
2426 6373 5.478679 TGGTCGTTTGGGTTTAAATCATCAT 59.521 36.000 0.00 0.00 0.00 2.45
2429 6382 5.993748 ATGGTCGTTTGGGTTTAAATCAT 57.006 34.783 0.00 0.00 0.00 2.45
2446 6399 2.486203 TGCATTGGACAACGTAATGGTC 59.514 45.455 9.41 5.79 33.54 4.02
2495 6449 1.942657 CCAGACATAATCCAAGTGGCG 59.057 52.381 0.00 0.00 34.44 5.69
2512 6830 2.747855 GGTGCTCGGAAAGGCCAG 60.748 66.667 5.01 0.00 35.94 4.85
2535 6853 9.276397 GTAGTCTAAAAAGCAAAACAAAACGTA 57.724 29.630 0.00 0.00 0.00 3.57
2559 6954 3.915536 TGCAATGCACTACAAGTACGTA 58.084 40.909 2.72 0.00 31.71 3.57
2636 7038 2.009774 GCGCCACAATCAGTATTCAGT 58.990 47.619 0.00 0.00 0.00 3.41
2637 7039 2.009051 TGCGCCACAATCAGTATTCAG 58.991 47.619 4.18 0.00 0.00 3.02
2638 7040 1.737236 GTGCGCCACAATCAGTATTCA 59.263 47.619 4.18 0.00 34.08 2.57
2639 7041 1.267532 CGTGCGCCACAATCAGTATTC 60.268 52.381 4.18 0.00 33.40 1.75
2640 7042 0.726827 CGTGCGCCACAATCAGTATT 59.273 50.000 4.18 0.00 33.40 1.89
2641 7043 1.705337 GCGTGCGCCACAATCAGTAT 61.705 55.000 4.18 0.00 33.40 2.12
2642 7044 2.387445 GCGTGCGCCACAATCAGTA 61.387 57.895 4.18 0.00 33.40 2.74
2676 7078 1.758280 CACCCATAACCTACCACGCTA 59.242 52.381 0.00 0.00 0.00 4.26
2677 7079 0.539986 CACCCATAACCTACCACGCT 59.460 55.000 0.00 0.00 0.00 5.07
2755 7157 5.353123 GTGGCACTACGATCAAATTTTCCTA 59.647 40.000 11.13 0.00 0.00 2.94
2764 7166 0.108992 GGACGTGGCACTACGATCAA 60.109 55.000 16.72 0.00 46.46 2.57
2780 7182 1.513622 GAGGGCGAGAACTCAGGAC 59.486 63.158 2.78 0.00 33.95 3.85
2814 7216 7.043391 CCTTTGAAAATCTTTTGAACCGAAGTC 60.043 37.037 0.00 0.00 0.00 3.01
2815 7217 6.756542 CCTTTGAAAATCTTTTGAACCGAAGT 59.243 34.615 0.00 0.00 0.00 3.01
2819 7221 7.713764 ATTCCTTTGAAAATCTTTTGAACCG 57.286 32.000 0.00 0.00 33.32 4.44
2873 7275 6.721571 ACAAATCAGACAACTAATGTACGG 57.278 37.500 0.00 0.00 44.12 4.02
2923 7325 6.966534 AATCTGATACAAATGAATCCCCAC 57.033 37.500 0.00 0.00 0.00 4.61
2995 7411 4.448732 GCTGTTTGGTTATGCAAGGAAAAG 59.551 41.667 0.00 0.00 0.00 2.27
3088 7509 4.840401 TGCGATTCACGTATTCTCAAAG 57.160 40.909 0.00 0.00 44.60 2.77
3096 7835 2.013400 TGCCATTTGCGATTCACGTAT 58.987 42.857 0.00 0.00 45.60 3.06
3097 7836 1.129624 GTGCCATTTGCGATTCACGTA 59.870 47.619 0.00 0.00 45.60 3.57
3098 7837 0.109781 GTGCCATTTGCGATTCACGT 60.110 50.000 0.00 0.00 45.60 4.49
3099 7838 0.168788 AGTGCCATTTGCGATTCACG 59.831 50.000 0.00 0.00 45.60 4.35
3107 7846 4.257267 ACCTTTTCTTAGTGCCATTTGC 57.743 40.909 0.00 0.00 41.77 3.68
3114 7853 4.451096 TCGACATCAACCTTTTCTTAGTGC 59.549 41.667 0.00 0.00 0.00 4.40
3162 7906 9.819267 ATATCTGTCATCATAGTATCATGCAAG 57.181 33.333 0.00 0.00 0.00 4.01
3192 7939 0.613853 AGGGCCTGACTAGTGCGTTA 60.614 55.000 4.50 0.00 0.00 3.18
3196 7943 0.461961 CTGTAGGGCCTGACTAGTGC 59.538 60.000 18.53 0.00 0.00 4.40
3272 9363 0.837272 GATGGGGCCTTGTGCTACTA 59.163 55.000 0.84 0.00 40.92 1.82
3273 9364 0.916358 AGATGGGGCCTTGTGCTACT 60.916 55.000 0.84 0.00 40.92 2.57
3274 9365 0.034089 AAGATGGGGCCTTGTGCTAC 60.034 55.000 0.84 0.00 40.92 3.58
3359 9732 4.215908 AGATTCAGCCGTTCTGGTATCTA 58.784 43.478 13.41 0.00 43.06 1.98
3389 9770 2.033151 GGCGCCACATATTAAACGAGAC 60.033 50.000 24.80 0.00 0.00 3.36
3391 9772 1.937223 TGGCGCCACATATTAAACGAG 59.063 47.619 29.03 0.00 0.00 4.18
3392 9773 1.937223 CTGGCGCCACATATTAAACGA 59.063 47.619 29.03 0.00 0.00 3.85
3417 9798 3.244215 ACATGTATATCGGTGGAGGCAAG 60.244 47.826 0.00 0.00 0.00 4.01
3433 10013 6.940298 CCTCTAAGTGGGAAAAGAAACATGTA 59.060 38.462 0.00 0.00 0.00 2.29
3459 10039 2.230130 AATTTTGGGGCTGATCCGAA 57.770 45.000 0.00 0.00 34.94 4.30
3460 10040 2.099405 GAAATTTTGGGGCTGATCCGA 58.901 47.619 0.00 0.00 34.94 4.55
3461 10041 1.824230 TGAAATTTTGGGGCTGATCCG 59.176 47.619 0.00 0.00 34.94 4.18
3462 10042 3.451902 TGATGAAATTTTGGGGCTGATCC 59.548 43.478 0.00 0.00 0.00 3.36
3469 10049 5.477984 TCTCAGTTCTGATGAAATTTTGGGG 59.522 40.000 2.89 0.00 33.52 4.96
3474 10054 7.884877 TGGTGTATCTCAGTTCTGATGAAATTT 59.115 33.333 2.89 0.00 33.52 1.82
3475 10055 7.397221 TGGTGTATCTCAGTTCTGATGAAATT 58.603 34.615 2.89 0.00 33.52 1.82
3533 10113 0.810648 TGGAATGATGCCGTTGAAGC 59.189 50.000 0.00 0.00 0.00 3.86
3570 10155 6.769512 ACTATTTCTACTTGAACCAAGAGCA 58.230 36.000 13.00 0.00 43.42 4.26
3629 10214 7.178274 CAGCTGATCATTAGTCTAGGATAGGTT 59.822 40.741 8.42 0.00 39.78 3.50
3637 10222 3.613671 CGGCCAGCTGATCATTAGTCTAG 60.614 52.174 17.39 0.00 0.00 2.43
3669 10254 2.602217 CGGTTTCTTCGAGCTGTTTTGG 60.602 50.000 0.00 0.00 0.00 3.28
3706 10291 4.116878 GCTACTGCTACTGCTGCC 57.883 61.111 0.00 0.00 41.07 4.85
3751 10336 2.545946 GGAATCTAAATCTGCTGACCGC 59.454 50.000 0.00 0.00 39.77 5.68
3753 10338 3.798202 ACGGAATCTAAATCTGCTGACC 58.202 45.455 0.00 0.00 0.00 4.02
3810 10406 1.083015 CGAAGACAAAACACGCCCG 60.083 57.895 0.00 0.00 0.00 6.13
3932 10533 3.474806 CGTTCACATCACGCCCTC 58.525 61.111 0.00 0.00 0.00 4.30
4026 10709 2.795973 CGCGTCGTACCTCCATCA 59.204 61.111 0.00 0.00 0.00 3.07
4039 10725 1.843344 GCAAATTTCAAACGCGCGT 59.157 47.368 32.73 32.73 0.00 6.01
4105 11070 1.323271 TTTTGTGGGCGCAACTTGGA 61.323 50.000 10.83 0.00 0.00 3.53
4216 11908 9.939424 AGATGGAGGAAGTAATAGTAACTAAGT 57.061 33.333 0.00 0.00 0.00 2.24
4225 11917 8.970859 ACATTTTGAGATGGAGGAAGTAATAG 57.029 34.615 0.00 0.00 0.00 1.73
4228 11920 9.581289 TTTTACATTTTGAGATGGAGGAAGTAA 57.419 29.630 0.00 0.00 0.00 2.24
4239 11931 9.661563 TGGTACTATCGTTTTACATTTTGAGAT 57.338 29.630 0.00 0.00 0.00 2.75
4240 11932 9.491675 TTGGTACTATCGTTTTACATTTTGAGA 57.508 29.630 0.00 0.00 0.00 3.27
4249 11941 7.787084 ACGTTTCTTTGGTACTATCGTTTTAC 58.213 34.615 0.00 0.00 0.00 2.01
4252 11944 6.218746 AGACGTTTCTTTGGTACTATCGTTT 58.781 36.000 0.00 0.00 0.00 3.60
4253 11945 5.776744 AGACGTTTCTTTGGTACTATCGTT 58.223 37.500 0.00 0.00 0.00 3.85
4255 11947 6.803320 TGTAAGACGTTTCTTTGGTACTATCG 59.197 38.462 0.00 0.00 39.17 2.92
4256 11948 8.699283 ATGTAAGACGTTTCTTTGGTACTATC 57.301 34.615 0.00 0.00 39.17 2.08
4257 11949 9.498176 AAATGTAAGACGTTTCTTTGGTACTAT 57.502 29.630 0.00 0.00 39.17 2.12
4259 11951 7.797038 AAATGTAAGACGTTTCTTTGGTACT 57.203 32.000 0.00 0.00 39.17 2.73
4260 11952 8.124199 TCAAAATGTAAGACGTTTCTTTGGTAC 58.876 33.333 0.00 0.00 39.17 3.34
4261 11953 8.211116 TCAAAATGTAAGACGTTTCTTTGGTA 57.789 30.769 0.00 0.00 39.17 3.25
4262 11954 7.066525 TCTCAAAATGTAAGACGTTTCTTTGGT 59.933 33.333 0.00 0.00 39.17 3.67
4263 11955 7.376072 GTCTCAAAATGTAAGACGTTTCTTTGG 59.624 37.037 0.00 0.00 39.17 3.28
4264 11956 8.122952 AGTCTCAAAATGTAAGACGTTTCTTTG 58.877 33.333 0.00 0.00 43.30 2.77
4265 11957 8.209917 AGTCTCAAAATGTAAGACGTTTCTTT 57.790 30.769 0.00 0.00 43.30 2.52
4266 11958 7.787725 AGTCTCAAAATGTAAGACGTTTCTT 57.212 32.000 0.00 0.00 43.30 2.52
4277 11969 9.961265 CCGACACTATTATAGTCTCAAAATGTA 57.039 33.333 1.33 0.00 36.76 2.29
4278 11970 8.692710 TCCGACACTATTATAGTCTCAAAATGT 58.307 33.333 1.33 0.00 36.76 2.71
4279 11971 9.529325 TTCCGACACTATTATAGTCTCAAAATG 57.471 33.333 1.33 0.00 36.76 2.32
4287 11979 7.192232 AGACGTTTTCCGACACTATTATAGTC 58.808 38.462 1.33 0.00 40.70 2.59
4292 11984 6.676950 TGTAAGACGTTTTCCGACACTATTA 58.323 36.000 0.00 0.00 40.70 0.98
4294 11986 5.125100 TGTAAGACGTTTTCCGACACTAT 57.875 39.130 0.00 0.00 40.70 2.12
4298 11990 3.742369 GGAATGTAAGACGTTTTCCGACA 59.258 43.478 0.00 0.00 40.70 4.35
4302 11994 3.370061 CCTCGGAATGTAAGACGTTTTCC 59.630 47.826 0.00 0.00 33.93 3.13
4303 11995 3.181523 GCCTCGGAATGTAAGACGTTTTC 60.182 47.826 0.00 0.00 0.00 2.29
4307 11999 0.892755 TGCCTCGGAATGTAAGACGT 59.107 50.000 0.00 0.00 0.00 4.34
4308 12000 1.134367 TCTGCCTCGGAATGTAAGACG 59.866 52.381 0.00 0.00 0.00 4.18
4309 12001 2.482142 CCTCTGCCTCGGAATGTAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
4315 12007 2.507944 CCCCTCTGCCTCGGAATG 59.492 66.667 0.00 0.00 0.00 2.67
4319 12011 1.993391 TTTACCCCCTCTGCCTCGG 60.993 63.158 0.00 0.00 0.00 4.63
4320 12012 1.221021 GTTTACCCCCTCTGCCTCG 59.779 63.158 0.00 0.00 0.00 4.63
4324 12016 1.378646 GGCTGTTTACCCCCTCTGC 60.379 63.158 0.00 0.00 0.00 4.26
4328 12020 1.205460 ATCACGGCTGTTTACCCCCT 61.205 55.000 0.00 0.00 0.00 4.79
4331 12023 0.170339 GCAATCACGGCTGTTTACCC 59.830 55.000 0.00 0.00 0.00 3.69
4344 12036 2.448926 TCGAAGTTCGAAGGCAATCA 57.551 45.000 24.97 0.00 46.90 2.57
4354 12046 4.084952 TGTTTACCATTTCGTCGAAGTTCG 60.085 41.667 19.23 19.23 42.10 3.95
4356 12048 5.277634 CCTTGTTTACCATTTCGTCGAAGTT 60.278 40.000 7.86 0.00 0.00 2.66
4358 12050 4.212636 ACCTTGTTTACCATTTCGTCGAAG 59.787 41.667 7.86 0.00 0.00 3.79
4359 12051 4.024725 CACCTTGTTTACCATTTCGTCGAA 60.025 41.667 2.90 2.90 0.00 3.71
4360 12052 3.495377 CACCTTGTTTACCATTTCGTCGA 59.505 43.478 0.00 0.00 0.00 4.20
4361 12053 3.805823 CACCTTGTTTACCATTTCGTCG 58.194 45.455 0.00 0.00 0.00 5.12
4363 12055 2.031508 CGCACCTTGTTTACCATTTCGT 60.032 45.455 0.00 0.00 0.00 3.85
4366 12058 2.035321 CACCGCACCTTGTTTACCATTT 59.965 45.455 0.00 0.00 0.00 2.32
4370 12062 1.170290 AGCACCGCACCTTGTTTACC 61.170 55.000 0.00 0.00 0.00 2.85
4371 12063 0.666374 AAGCACCGCACCTTGTTTAC 59.334 50.000 0.00 0.00 0.00 2.01
4429 12651 4.340617 TCCCCATGAAAAGTGTGGATTAC 58.659 43.478 0.00 0.00 34.94 1.89
4442 12664 9.062524 CGATATACAATACTTTTTCCCCATGAA 57.937 33.333 0.00 0.00 0.00 2.57
4443 12665 7.663905 CCGATATACAATACTTTTTCCCCATGA 59.336 37.037 0.00 0.00 0.00 3.07
4445 12667 6.433093 GCCGATATACAATACTTTTTCCCCAT 59.567 38.462 0.00 0.00 0.00 4.00
4447 12669 5.766174 TGCCGATATACAATACTTTTTCCCC 59.234 40.000 0.00 0.00 0.00 4.81
4448 12670 6.870971 TGCCGATATACAATACTTTTTCCC 57.129 37.500 0.00 0.00 0.00 3.97
4449 12671 8.403236 AGTTTGCCGATATACAATACTTTTTCC 58.597 33.333 0.00 0.00 0.00 3.13
4463 12685 8.314751 GGCCTGATATATATAGTTTGCCGATAT 58.685 37.037 0.00 0.00 0.00 1.63
4465 12687 6.525629 GGCCTGATATATATAGTTTGCCGAT 58.474 40.000 0.00 0.00 0.00 4.18
4468 12690 5.671493 ACGGCCTGATATATATAGTTTGCC 58.329 41.667 0.00 12.68 0.00 4.52
4477 12699 8.582437 GCCTATACATAAACGGCCTGATATATA 58.418 37.037 0.00 0.00 34.75 0.86
4556 13056 5.866633 GGATTCGAATTGTTGCCATGTAAAA 59.133 36.000 12.81 0.00 0.00 1.52
4921 13453 4.699522 GCGGTGGCGAAGAAGGGT 62.700 66.667 0.00 0.00 0.00 4.34
5309 13869 5.927689 TGTCCAATTGCAGATGTGAATTTTC 59.072 36.000 0.00 0.00 0.00 2.29
5619 14187 4.590222 AGCAGGACAAATGGAGAAACAATT 59.410 37.500 0.00 0.00 0.00 2.32
5621 14189 3.565307 AGCAGGACAAATGGAGAAACAA 58.435 40.909 0.00 0.00 0.00 2.83
5653 14224 6.693113 GCTTTTGGTCAGTTTTTCTTGTAGAG 59.307 38.462 0.00 0.00 0.00 2.43
5657 14228 4.222810 AGGCTTTTGGTCAGTTTTTCTTGT 59.777 37.500 0.00 0.00 0.00 3.16
5676 14263 4.834496 TCTGTCCATCAAATTTGAAAGGCT 59.166 37.500 26.42 10.66 41.13 4.58
5907 14504 8.044908 TCTCTCCTTTGTTTACAAGTTACAACT 58.955 33.333 0.00 0.00 42.04 3.16
5922 14527 5.087323 TCTTCCTACATGTCTCTCCTTTGT 58.913 41.667 0.00 0.00 0.00 2.83
6622 15241 6.663953 ACTAATCTTGTAGCTGTACCTTGAGA 59.336 38.462 0.00 0.00 0.00 3.27
6659 15290 7.544622 TCATACTATTACACTCACACAACTCC 58.455 38.462 0.00 0.00 0.00 3.85
6690 15321 7.921786 TTTGGTGGAGAGTACAATAGAAATG 57.078 36.000 0.00 0.00 0.00 2.32
6726 15357 3.445096 AGAAGCTTTGCTCTCTCTCTCTC 59.555 47.826 0.00 0.00 38.25 3.20
6727 15358 3.434309 AGAAGCTTTGCTCTCTCTCTCT 58.566 45.455 0.00 0.00 38.25 3.10
6728 15359 3.874392 AGAAGCTTTGCTCTCTCTCTC 57.126 47.619 0.00 0.00 38.25 3.20
6864 15495 6.892658 TGCAACCAGTGTCAAAGTTTATAT 57.107 33.333 0.00 0.00 0.00 0.86
6881 15519 4.686091 GCTCTGAAAGGTATTTTTGCAACC 59.314 41.667 0.00 0.00 0.00 3.77
6899 15538 4.446994 TGAGATGAACAGTACTGCTCTG 57.553 45.455 22.90 0.00 38.68 3.35
6920 15559 8.859090 TGTTACTGTTCTCCAATTCAATCAATT 58.141 29.630 0.00 0.00 34.79 2.32
6921 15560 8.299570 GTGTTACTGTTCTCCAATTCAATCAAT 58.700 33.333 0.00 0.00 0.00 2.57
6922 15561 7.284261 TGTGTTACTGTTCTCCAATTCAATCAA 59.716 33.333 0.00 0.00 0.00 2.57
6923 15562 6.770303 TGTGTTACTGTTCTCCAATTCAATCA 59.230 34.615 0.00 0.00 0.00 2.57
6924 15563 7.202016 TGTGTTACTGTTCTCCAATTCAATC 57.798 36.000 0.00 0.00 0.00 2.67
6977 15620 5.294306 TCCAAATTGTGCGTTTAATTTTGCA 59.706 32.000 0.00 0.00 35.07 4.08
6983 15626 6.313411 CCATGAATCCAAATTGTGCGTTTAAT 59.687 34.615 0.00 0.00 0.00 1.40
6985 15628 5.167121 CCATGAATCCAAATTGTGCGTTTA 58.833 37.500 0.00 0.00 0.00 2.01
7000 15643 3.758300 ACGAAAATTGTCGCCATGAATC 58.242 40.909 17.96 0.00 45.00 2.52
7001 15644 3.848272 ACGAAAATTGTCGCCATGAAT 57.152 38.095 17.96 0.00 45.00 2.57
7002 15645 3.634568 AACGAAAATTGTCGCCATGAA 57.365 38.095 17.96 0.00 45.00 2.57
7029 15672 4.466567 TCATAAATATGTTGCGAAGCCG 57.533 40.909 0.68 0.00 43.48 5.52
7079 15722 0.532115 ATTGAAACAATCCGCAGCCC 59.468 50.000 0.00 0.00 0.00 5.19
7083 15726 4.313277 TGTTCAATTGAAACAATCCGCA 57.687 36.364 22.07 10.58 35.58 5.69
7086 15729 6.857451 GCCATTTTGTTCAATTGAAACAATCC 59.143 34.615 22.07 9.53 35.58 3.01
7129 15772 5.846994 GCTCGAGTCGATTGTAATGTAGTAG 59.153 44.000 16.94 0.00 34.61 2.57
7170 15813 2.502633 GGTACCTCGTCTCTTCCCC 58.497 63.158 4.06 0.00 0.00 4.81
7211 15854 1.475403 CCCTAGAGAGCAAGGAACGA 58.525 55.000 0.00 0.00 34.58 3.85
7213 15856 1.483004 GTCCCCTAGAGAGCAAGGAAC 59.517 57.143 0.00 0.00 34.58 3.62
7274 15917 1.617947 AACATCCAGGACCTCCTCGC 61.618 60.000 0.00 0.00 46.65 5.03
7530 16179 0.179121 TTCGTTCCAGCGCGATACAT 60.179 50.000 12.10 0.00 36.97 2.29
7579 16231 2.768344 TCCCTTCCGCCTCCATCC 60.768 66.667 0.00 0.00 0.00 3.51
7580 16232 2.825264 CTCCCTTCCGCCTCCATC 59.175 66.667 0.00 0.00 0.00 3.51
7581 16233 3.483869 GCTCCCTTCCGCCTCCAT 61.484 66.667 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.