Multiple sequence alignment - TraesCS6A01G264800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G264800 chr6A 100.000 6383 0 0 1001 7383 489220024 489226406 0.000000e+00 11788.0
1 TraesCS6A01G264800 chr6A 100.000 346 0 0 1 346 489219024 489219369 2.250000e-179 640.0
2 TraesCS6A01G264800 chr6D 96.344 2188 43 9 3871 6026 353355965 353353783 0.000000e+00 3563.0
3 TraesCS6A01G264800 chr6D 96.729 1437 35 3 2326 3758 353357392 353355964 0.000000e+00 2383.0
4 TraesCS6A01G264800 chr6D 93.180 1349 59 7 6054 7383 353353783 353352449 0.000000e+00 1951.0
5 TraesCS6A01G264800 chr6D 93.018 1332 59 5 1002 2300 353358721 353357391 0.000000e+00 1914.0
6 TraesCS6A01G264800 chr6D 95.690 116 5 0 3757 3872 307327729 307327614 3.520000e-43 187.0
7 TraesCS6A01G264800 chr6D 94.828 116 6 0 3757 3872 287026013 287025898 1.640000e-41 182.0
8 TraesCS6A01G264800 chr6B 93.819 2362 91 18 3871 6197 525108619 525110960 0.000000e+00 3502.0
9 TraesCS6A01G264800 chr6B 94.756 2212 98 8 1559 3758 525106415 525108620 0.000000e+00 3426.0
10 TraesCS6A01G264800 chr6B 92.857 938 40 14 6470 7383 525111041 525111975 0.000000e+00 1336.0
11 TraesCS6A01G264800 chr6B 86.634 606 46 16 1002 1574 525105644 525106247 8.080000e-179 638.0
12 TraesCS6A01G264800 chr6B 84.326 319 47 3 21 338 525102656 525102972 7.190000e-80 309.0
13 TraesCS6A01G264800 chr2D 82.927 369 63 0 7002 7370 611898498 611898130 4.270000e-87 333.0
14 TraesCS6A01G264800 chr2D 81.572 369 68 0 7002 7370 413951727 413952095 9.310000e-79 305.0
15 TraesCS6A01G264800 chr2B 82.385 369 65 0 7002 7370 746322873 746322505 9.240000e-84 322.0
16 TraesCS6A01G264800 chr2A 82.114 369 66 0 7002 7370 581164291 581164659 4.300000e-82 316.0
17 TraesCS6A01G264800 chr2A 81.572 369 68 0 7002 7370 744331931 744331563 9.310000e-79 305.0
18 TraesCS6A01G264800 chr2A 95.902 122 5 0 3757 3878 78848936 78848815 1.620000e-46 198.0
19 TraesCS6A01G264800 chr1D 80.936 299 53 4 6929 7225 66096620 66096324 4.450000e-57 233.0
20 TraesCS6A01G264800 chr1A 81.206 282 51 2 6929 7209 64599776 64599496 7.450000e-55 226.0
21 TraesCS6A01G264800 chr1A 93.388 121 8 0 3752 3872 385891789 385891909 5.890000e-41 180.0
22 TraesCS6A01G264800 chr4A 95.041 121 5 1 3752 3872 187572227 187572346 9.780000e-44 189.0
23 TraesCS6A01G264800 chr5D 92.424 132 7 3 3750 3879 138565547 138565677 1.260000e-42 185.0
24 TraesCS6A01G264800 chr5D 90.909 132 9 3 3750 3879 312934223 312934353 2.740000e-39 174.0
25 TraesCS6A01G264800 chr5B 90.370 135 13 0 3742 3876 386151882 386151748 2.120000e-40 178.0
26 TraesCS6A01G264800 chr7A 89.630 135 14 0 3742 3876 613709489 613709355 9.850000e-39 172.0
27 TraesCS6A01G264800 chr3B 100.000 29 0 0 6400 6428 188436212 188436184 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G264800 chr6A 489219024 489226406 7382 False 6214.00 11788 100.00000 1 7383 2 chr6A.!!$F1 7382
1 TraesCS6A01G264800 chr6D 353352449 353358721 6272 True 2452.75 3563 94.81775 1002 7383 4 chr6D.!!$R3 6381
2 TraesCS6A01G264800 chr6B 525102656 525111975 9319 False 1842.20 3502 90.47840 21 7383 5 chr6B.!!$F1 7362

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.033894 GAAGACGACCCTCCTCCTCT 60.034 60.000 0.00 0.00 0.00 3.69 F
255 256 0.179174 CCGCACGTGATTAAAAGGGC 60.179 55.000 22.23 0.00 0.00 5.19 F
1381 3410 0.655733 CGATTTGGTTAATCCGCGCT 59.344 50.000 5.56 0.00 39.63 5.92 F
1645 3889 1.561643 TTTCAGGGCGACATCTCTCT 58.438 50.000 0.00 0.00 0.00 3.10 F
1710 3954 1.973281 ATGTGCCAACCGCTTCAGG 60.973 57.895 0.00 0.00 38.78 3.86 F
3212 5468 0.548031 CCCCAGTCAGTGGTATGCAT 59.452 55.000 3.79 3.79 46.37 3.96 F
4072 6329 0.113190 CCCAAGTCAAAGGGGAAGCT 59.887 55.000 0.00 0.00 45.08 3.74 F
5683 7974 1.135575 CATCTGCACGAAGAAAAGGCC 60.136 52.381 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 3391 0.655733 AGCGCGGATTAACCAAATCG 59.344 50.0 8.83 0.0 44.32 3.34 R
1837 4088 2.026822 AGGAGCACAAACACTATCCCAG 60.027 50.0 0.00 0.0 0.00 4.45 R
2304 4556 0.035056 ATTCCCTGGAGAAAGCCACG 60.035 55.0 0.00 0.0 33.52 4.94 R
2726 4978 0.324943 GGGTTCTGACTGCTGCCTTA 59.675 55.0 0.00 0.0 0.00 2.69 R
3707 5964 1.631405 TCAAGGTGCAAAATCAGGGG 58.369 50.0 0.00 0.0 0.00 4.79 R
4649 6908 0.877071 AGCCAGAATGCTCAACAACG 59.123 50.0 0.00 0.0 36.75 4.10 R
6040 8333 0.183492 TCAACTGTGGGCTGCTCTTT 59.817 50.0 0.00 0.0 0.00 2.52 R
6502 8835 0.319297 GCCCAAGCTGTTCTTTGCTG 60.319 55.0 0.00 0.0 39.71 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.757099 TCTTCTCGATCCTTTAAAGGGTT 57.243 39.130 29.72 19.39 46.47 4.11
35 36 3.501385 CCTTTAAAGGGTTCATGGGTGGA 60.501 47.826 24.39 0.00 42.66 4.02
47 48 2.187946 GGTGGATCCAGCCTGTCG 59.812 66.667 29.98 0.00 38.38 4.35
54 55 2.564553 ATCCAGCCTGTCGAGCGAAC 62.565 60.000 0.00 0.00 34.64 3.95
59 60 3.470567 CTGTCGAGCGAACGTGGC 61.471 66.667 3.80 3.80 34.70 5.01
63 64 2.507102 CGAGCGAACGTGGCAGAT 60.507 61.111 13.53 0.00 0.00 2.90
66 67 0.807667 GAGCGAACGTGGCAGATGAT 60.808 55.000 13.53 0.00 0.00 2.45
73 74 1.689243 CGTGGCAGATGATCCCCTCA 61.689 60.000 0.00 0.00 38.53 3.86
104 105 0.258194 TAGGAAGACGACCCTCCTCC 59.742 60.000 8.96 0.00 34.11 4.30
105 106 1.000612 GGAAGACGACCCTCCTCCT 59.999 63.158 0.00 0.00 0.00 3.69
107 108 0.033894 GAAGACGACCCTCCTCCTCT 60.034 60.000 0.00 0.00 0.00 3.69
182 183 3.560105 AGAAGAGCCTATTCAAATGCCC 58.440 45.455 1.44 0.00 0.00 5.36
183 184 2.371658 AGAGCCTATTCAAATGCCCC 57.628 50.000 0.00 0.00 0.00 5.80
185 186 0.468029 AGCCTATTCAAATGCCCCGG 60.468 55.000 0.00 0.00 0.00 5.73
219 220 1.089481 ATATGTGTCGTGCCTTGCGG 61.089 55.000 0.00 0.00 0.00 5.69
232 233 0.319469 CTTGCGGGCCGACAATTTTT 60.319 50.000 33.44 0.00 0.00 1.94
237 238 1.375396 GGCCGACAATTTTTGCCCC 60.375 57.895 0.00 0.00 36.07 5.80
238 239 1.736282 GCCGACAATTTTTGCCCCG 60.736 57.895 0.00 0.00 0.00 5.73
242 243 1.281566 GACAATTTTTGCCCCGCACG 61.282 55.000 0.00 0.00 38.71 5.34
255 256 0.179174 CCGCACGTGATTAAAAGGGC 60.179 55.000 22.23 0.00 0.00 5.19
258 259 1.810151 GCACGTGATTAAAAGGGCTGA 59.190 47.619 22.23 0.00 0.00 4.26
261 262 2.817844 ACGTGATTAAAAGGGCTGAACC 59.182 45.455 0.00 0.00 37.93 3.62
305 306 3.373565 GCGACCCCAAAAGCCAGG 61.374 66.667 0.00 0.00 0.00 4.45
306 307 3.373565 CGACCCCAAAAGCCAGGC 61.374 66.667 1.84 1.84 0.00 4.85
307 308 3.373565 GACCCCAAAAGCCAGGCG 61.374 66.667 5.55 0.00 0.00 5.52
309 310 3.683937 CCCCAAAAGCCAGGCGTG 61.684 66.667 5.55 5.80 0.00 5.34
311 312 2.498056 CCCAAAAGCCAGGCGTGTT 61.498 57.895 5.55 0.00 0.00 3.32
313 314 1.732917 CAAAAGCCAGGCGTGTTGA 59.267 52.632 15.96 0.00 0.00 3.18
320 321 2.279918 AGGCGTGTTGACGGTCAC 60.280 61.111 10.97 7.02 46.20 3.67
338 339 2.616376 TCACGACACAACCCTTTTGATG 59.384 45.455 0.00 0.00 0.00 3.07
339 340 2.616376 CACGACACAACCCTTTTGATGA 59.384 45.455 0.00 0.00 0.00 2.92
340 341 2.616842 ACGACACAACCCTTTTGATGAC 59.383 45.455 0.00 0.00 0.00 3.06
1180 3194 1.218047 CCCGCGAAGGTGAGATTCA 59.782 57.895 8.23 0.00 38.74 2.57
1196 3210 2.570415 TTCAATTGCCCGGTCTGTTA 57.430 45.000 0.00 0.00 0.00 2.41
1213 3227 6.134061 GTCTGTTAGTTTCGGTGTTTGATTC 58.866 40.000 0.00 0.00 0.00 2.52
1222 3236 1.196127 GGTGTTTGATTCGTTCGGGAC 59.804 52.381 0.00 0.00 0.00 4.46
1236 3250 2.739132 GGACTTCGAACACCCCGT 59.261 61.111 0.00 0.00 0.00 5.28
1237 3251 1.666872 GGACTTCGAACACCCCGTG 60.667 63.158 0.00 0.00 39.75 4.94
1238 3252 1.364901 GACTTCGAACACCCCGTGA 59.635 57.895 0.00 0.00 36.96 4.35
1243 3258 1.039068 TCGAACACCCCGTGAAAGTA 58.961 50.000 0.00 0.00 36.96 2.24
1351 3367 3.918328 AATCCCCGTCGGAGTGGGT 62.918 63.158 14.39 0.00 46.60 4.51
1354 3370 3.760035 CCCGTCGGAGTGGGTCTG 61.760 72.222 14.39 0.00 38.96 3.51
1355 3371 2.675423 CCGTCGGAGTGGGTCTGA 60.675 66.667 4.91 0.00 38.34 3.27
1362 3391 0.833949 GGAGTGGGTCTGAGAATCCC 59.166 60.000 1.30 1.30 41.41 3.85
1381 3410 0.655733 CGATTTGGTTAATCCGCGCT 59.344 50.000 5.56 0.00 39.63 5.92
1408 3455 4.907879 TTTTACTAGCTAGTAGACGGCC 57.092 45.455 27.86 0.00 39.69 6.13
1494 3556 3.740832 TGCGCGAATTAGAATGGTGATAG 59.259 43.478 12.10 0.00 0.00 2.08
1502 3564 8.458843 CGAATTAGAATGGTGATAGTTTTGGTT 58.541 33.333 0.00 0.00 0.00 3.67
1513 3575 8.033038 GGTGATAGTTTTGGTTTCCCTTTAATC 58.967 37.037 0.00 0.00 0.00 1.75
1525 3587 2.092914 CCCTTTAATCCGAGCCTTCTGT 60.093 50.000 0.00 0.00 0.00 3.41
1539 3601 2.493278 CCTTCTGTTGTGCCCTATTTGG 59.507 50.000 0.00 0.00 0.00 3.28
1615 3859 4.471904 AAATGCAGATCTGACGGTAAGA 57.528 40.909 27.04 0.00 0.00 2.10
1645 3889 1.561643 TTTCAGGGCGACATCTCTCT 58.438 50.000 0.00 0.00 0.00 3.10
1710 3954 1.973281 ATGTGCCAACCGCTTCAGG 60.973 57.895 0.00 0.00 38.78 3.86
1837 4088 7.088589 TGCTTAACAGAGCTATTCAAATTCC 57.911 36.000 0.00 0.00 43.11 3.01
1846 4097 6.331307 AGAGCTATTCAAATTCCTGGGATAGT 59.669 38.462 0.00 0.00 0.00 2.12
2096 4348 7.543520 CAGGCCTTTATTCAAGAGTTTGATTTC 59.456 37.037 0.00 0.00 42.60 2.17
2097 4349 6.528072 GGCCTTTATTCAAGAGTTTGATTTCG 59.472 38.462 0.00 0.00 42.60 3.46
2360 4612 6.128486 TGCCTCATTTTCTGCCATCTATTAA 58.872 36.000 0.00 0.00 0.00 1.40
2473 4725 4.209288 CACACTGGAACTTTCTGTAACTCG 59.791 45.833 0.00 0.00 0.00 4.18
2508 4760 9.529325 ACAAGCCTTTTATCTAAAAACAGTTTC 57.471 29.630 0.00 0.00 35.04 2.78
2537 4789 7.437862 TGAATTTTGGCAATTCACAAGACTTAC 59.562 33.333 11.24 0.00 40.53 2.34
2566 4818 4.081697 GTGCTGCCAAAACCTATTACCATT 60.082 41.667 0.00 0.00 0.00 3.16
2726 4978 2.092212 CAGGTGTGCTAGATGGGGAAAT 60.092 50.000 0.00 0.00 0.00 2.17
2892 5144 8.183104 TGTGGTTGGAATATGTTTGTCAAATA 57.817 30.769 0.40 0.00 0.00 1.40
3111 5367 6.751514 TTGTTTGTGACAATTGTACTGACT 57.248 33.333 11.95 0.00 43.13 3.41
3212 5468 0.548031 CCCCAGTCAGTGGTATGCAT 59.452 55.000 3.79 3.79 46.37 3.96
3257 5513 6.374053 TGATATGGTAGTGTCATGTTTTGGTG 59.626 38.462 0.00 0.00 0.00 4.17
3360 5616 6.654582 TCTTAAATGCAACTCTTCAGTGCATA 59.345 34.615 10.48 0.00 42.06 3.14
3605 5862 1.142870 TGGAGCTGTTTTAGTGCCAGT 59.857 47.619 0.00 0.00 31.22 4.00
3657 5914 5.376854 TTTGCTTTTGAGTTCTATGCCTC 57.623 39.130 0.00 0.00 0.00 4.70
3707 5964 4.707030 TGTCAGCATTCATGGTCATTTC 57.293 40.909 0.00 0.00 36.17 2.17
3723 5980 2.397044 TTTCCCCTGATTTTGCACCT 57.603 45.000 0.00 0.00 0.00 4.00
3758 6015 9.657121 GCATGCTTTCTCTTGACTTTATATTAC 57.343 33.333 11.37 0.00 0.00 1.89
3761 6018 9.601217 TGCTTTCTCTTGACTTTATATTACTCC 57.399 33.333 0.00 0.00 0.00 3.85
3762 6019 9.047371 GCTTTCTCTTGACTTTATATTACTCCC 57.953 37.037 0.00 0.00 0.00 4.30
3765 6022 9.716556 TTCTCTTGACTTTATATTACTCCCTCT 57.283 33.333 0.00 0.00 0.00 3.69
3766 6023 9.137459 TCTCTTGACTTTATATTACTCCCTCTG 57.863 37.037 0.00 0.00 0.00 3.35
3767 6024 8.840200 TCTTGACTTTATATTACTCCCTCTGT 57.160 34.615 0.00 0.00 0.00 3.41
3768 6025 8.915036 TCTTGACTTTATATTACTCCCTCTGTC 58.085 37.037 0.00 0.00 0.00 3.51
3769 6026 8.840200 TTGACTTTATATTACTCCCTCTGTCT 57.160 34.615 0.00 0.00 0.00 3.41
3770 6027 8.239038 TGACTTTATATTACTCCCTCTGTCTG 57.761 38.462 0.00 0.00 0.00 3.51
3771 6028 8.059461 TGACTTTATATTACTCCCTCTGTCTGA 58.941 37.037 0.00 0.00 0.00 3.27
3772 6029 8.840200 ACTTTATATTACTCCCTCTGTCTGAA 57.160 34.615 0.00 0.00 0.00 3.02
3773 6030 9.268282 ACTTTATATTACTCCCTCTGTCTGAAA 57.732 33.333 0.00 0.00 0.00 2.69
3778 6035 7.741554 ATTACTCCCTCTGTCTGAAAATACT 57.258 36.000 0.00 0.00 0.00 2.12
3779 6036 7.554959 TTACTCCCTCTGTCTGAAAATACTT 57.445 36.000 0.00 0.00 0.00 2.24
3780 6037 5.799213 ACTCCCTCTGTCTGAAAATACTTG 58.201 41.667 0.00 0.00 0.00 3.16
3781 6038 5.308237 ACTCCCTCTGTCTGAAAATACTTGT 59.692 40.000 0.00 0.00 0.00 3.16
3782 6039 6.497259 ACTCCCTCTGTCTGAAAATACTTGTA 59.503 38.462 0.00 0.00 0.00 2.41
3783 6040 7.181125 ACTCCCTCTGTCTGAAAATACTTGTAT 59.819 37.037 0.00 0.00 0.00 2.29
3784 6041 7.918076 TCCCTCTGTCTGAAAATACTTGTATT 58.082 34.615 0.60 0.60 0.00 1.89
3785 6042 9.042450 TCCCTCTGTCTGAAAATACTTGTATTA 57.958 33.333 6.46 0.00 0.00 0.98
3786 6043 9.319143 CCCTCTGTCTGAAAATACTTGTATTAG 57.681 37.037 6.46 2.07 0.00 1.73
3847 6104 8.697507 ACATCCATTTTATCCATTTCTAGGAC 57.302 34.615 0.00 0.00 38.13 3.85
3848 6105 8.281531 ACATCCATTTTATCCATTTCTAGGACA 58.718 33.333 0.00 0.00 38.13 4.02
3849 6106 9.135189 CATCCATTTTATCCATTTCTAGGACAA 57.865 33.333 0.00 0.00 38.13 3.18
3850 6107 8.752005 TCCATTTTATCCATTTCTAGGACAAG 57.248 34.615 0.00 0.00 38.13 3.16
3851 6108 8.336235 TCCATTTTATCCATTTCTAGGACAAGT 58.664 33.333 0.00 0.00 38.13 3.16
3852 6109 9.627123 CCATTTTATCCATTTCTAGGACAAGTA 57.373 33.333 0.00 0.00 38.13 2.24
3858 6115 8.970859 ATCCATTTCTAGGACAAGTATTTCTG 57.029 34.615 0.00 0.00 38.13 3.02
3859 6116 7.338710 TCCATTTCTAGGACAAGTATTTCTGG 58.661 38.462 0.00 0.00 0.00 3.86
3860 6117 7.182026 TCCATTTCTAGGACAAGTATTTCTGGA 59.818 37.037 0.00 0.00 0.00 3.86
3861 6118 7.281100 CCATTTCTAGGACAAGTATTTCTGGAC 59.719 40.741 0.00 0.00 0.00 4.02
3862 6119 5.578005 TCTAGGACAAGTATTTCTGGACG 57.422 43.478 0.00 0.00 0.00 4.79
3863 6120 3.611766 AGGACAAGTATTTCTGGACGG 57.388 47.619 0.00 0.00 0.00 4.79
3864 6121 3.170717 AGGACAAGTATTTCTGGACGGA 58.829 45.455 0.00 0.00 0.00 4.69
3865 6122 3.195825 AGGACAAGTATTTCTGGACGGAG 59.804 47.826 0.00 0.00 0.00 4.63
3866 6123 3.522553 GACAAGTATTTCTGGACGGAGG 58.477 50.000 0.00 0.00 0.00 4.30
3867 6124 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3868 6125 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
3869 6126 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
3870 6127 2.108970 GTATTTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
3871 6128 2.544844 ATTTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
3913 6170 7.624360 ACTATTCGAAGTATTGCCATTTTGA 57.376 32.000 3.35 0.00 0.00 2.69
3947 6204 7.983484 GCTATGAATTTTGTTGGATTCCTTGAT 59.017 33.333 3.95 0.00 32.57 2.57
3951 6208 8.209584 TGAATTTTGTTGGATTCCTTGATGAAA 58.790 29.630 3.95 0.00 32.57 2.69
4025 6282 1.195674 GAGTTCCTTCGTTGCTTGCTC 59.804 52.381 0.00 0.00 0.00 4.26
4031 6288 2.609459 CCTTCGTTGCTTGCTCGATAAT 59.391 45.455 11.97 0.00 33.72 1.28
4072 6329 0.113190 CCCAAGTCAAAGGGGAAGCT 59.887 55.000 0.00 0.00 45.08 3.74
4160 6417 7.870509 ATGTACTCTGTCATTGCATATTTGT 57.129 32.000 0.00 0.00 0.00 2.83
4174 6431 6.815089 TGCATATTTGTTTTCTCTTTGTGGT 58.185 32.000 0.00 0.00 0.00 4.16
4427 6684 5.163581 GCTTGATAAAGCACCTGATGTCATT 60.164 40.000 10.16 0.00 44.85 2.57
4559 6816 6.431234 CAGACAAGGAGGTTAGTTTTATGCTT 59.569 38.462 0.00 0.00 0.00 3.91
4649 6908 8.725148 CAGGAACTAATGTATGATCTTTATGGC 58.275 37.037 0.00 0.00 36.02 4.40
4739 6998 3.340928 CTGGCACTTGATGAATGACTCA 58.659 45.455 0.00 0.00 38.81 3.41
4751 7010 4.650734 TGAATGACTCAAATGTAGGTGCA 58.349 39.130 0.00 0.00 0.00 4.57
4997 7258 5.941555 CTTCCAGTAATAGAAGTCCTGGT 57.058 43.478 0.00 0.00 42.63 4.00
5048 7309 2.867624 TGCAAAACATCTCTCCTTGCT 58.132 42.857 6.64 0.00 42.24 3.91
5292 7568 7.419204 TGGTAAGGTTTTATTTTCAACGACAG 58.581 34.615 0.00 0.00 0.00 3.51
5359 7635 2.954318 CTGGTGCATCCTCAATTTAGGG 59.046 50.000 5.84 0.00 37.24 3.53
5363 7639 3.879892 GTGCATCCTCAATTTAGGGTCTC 59.120 47.826 5.84 0.00 37.24 3.36
5637 7928 1.611977 GGCCCTAGTGTGGACAAAAAC 59.388 52.381 0.00 0.00 0.00 2.43
5683 7974 1.135575 CATCTGCACGAAGAAAAGGCC 60.136 52.381 0.00 0.00 0.00 5.19
5869 8161 2.601763 GCTGTACGTAGTTTCCAATCCG 59.398 50.000 0.00 0.00 37.78 4.18
5949 8241 9.905171 AAGATTTTCTTTTCTGCTTTCTGATAC 57.095 29.630 0.00 0.00 31.57 2.24
6046 8339 3.503998 GGGATTCCCAGGAAAGAGC 57.496 57.895 17.36 0.00 44.65 4.09
6050 8343 0.033699 ATTCCCAGGAAAGAGCAGCC 60.034 55.000 2.65 0.00 37.69 4.85
6090 8385 0.893270 TCCAGGCCCACGTCATTTTG 60.893 55.000 0.00 0.00 0.00 2.44
6108 8403 3.969117 TTGTAGCAGCTTGTTTGACAG 57.031 42.857 0.00 0.00 0.00 3.51
6130 8425 9.639424 GACAGAGTCAATCCTGTACTGACAGTC 62.639 48.148 12.39 12.57 43.02 3.51
6161 8456 1.375908 CACATACAGGCTGCACCGT 60.376 57.895 15.89 3.92 46.52 4.83
6164 8459 1.209504 ACATACAGGCTGCACCGTTAT 59.790 47.619 15.89 0.47 46.52 1.89
6206 8501 6.404734 CCTGGACAAAAATACTGATTACTGGC 60.405 42.308 0.00 0.00 0.00 4.85
6217 8512 4.691216 ACTGATTACTGGCGAAAAAGAGAC 59.309 41.667 0.00 0.00 0.00 3.36
6235 8530 7.391148 AAGAGACAAGTAGCAAAGAACAAAA 57.609 32.000 0.00 0.00 0.00 2.44
6282 8577 7.465353 TTCTGCATCCAATCAAGTTTATTCA 57.535 32.000 0.00 0.00 0.00 2.57
6286 8581 5.394443 GCATCCAATCAAGTTTATTCAGGCA 60.394 40.000 0.00 0.00 0.00 4.75
6296 8591 3.921119 TTATTCAGGCAGTTTGCTGTG 57.079 42.857 0.67 0.08 44.28 3.66
6382 8678 9.640952 TTATATTTTCCCCTCTCTATGTTTTGG 57.359 33.333 0.00 0.00 0.00 3.28
6502 8835 4.414337 AGTATTTCCAGATGGAGTGAGC 57.586 45.455 1.13 0.00 46.36 4.26
6514 8847 1.534595 GGAGTGAGCAGCAAAGAACAG 59.465 52.381 0.00 0.00 0.00 3.16
6604 8938 3.313526 GGGGCTGCGATGCTATATAATTG 59.686 47.826 0.00 0.00 0.00 2.32
6632 8966 5.391312 AACTTTTATCACCCAGCAACATC 57.609 39.130 0.00 0.00 0.00 3.06
6791 9134 4.002982 AGCACAGCTTTTACATTCGATGA 58.997 39.130 0.00 0.00 33.89 2.92
7007 9367 1.730593 CGTCGGCGTTCTTGATCGTC 61.731 60.000 6.85 0.23 0.00 4.20
7034 9394 2.112928 TGCGCCACCATCACTGTT 59.887 55.556 4.18 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.831526 CCACCCATGAACCCTTTAAAGG 59.168 50.000 25.02 25.02 46.06 3.11
14 15 3.773560 TCCACCCATGAACCCTTTAAAG 58.226 45.455 8.32 8.32 0.00 1.85
15 16 3.905493 TCCACCCATGAACCCTTTAAA 57.095 42.857 0.00 0.00 0.00 1.52
16 17 3.309556 GGATCCACCCATGAACCCTTTAA 60.310 47.826 6.95 0.00 0.00 1.52
17 18 2.243736 GGATCCACCCATGAACCCTTTA 59.756 50.000 6.95 0.00 0.00 1.85
18 19 1.007118 GGATCCACCCATGAACCCTTT 59.993 52.381 6.95 0.00 0.00 3.11
19 20 0.631212 GGATCCACCCATGAACCCTT 59.369 55.000 6.95 0.00 0.00 3.95
25 26 1.308128 AGGCTGGATCCACCCATGA 60.308 57.895 25.17 0.00 38.00 3.07
35 36 2.351244 TTCGCTCGACAGGCTGGAT 61.351 57.895 20.34 0.00 0.00 3.41
42 43 3.470567 GCCACGTTCGCTCGACAG 61.471 66.667 6.13 0.00 34.70 3.51
47 48 0.807667 ATCATCTGCCACGTTCGCTC 60.808 55.000 6.00 0.00 0.00 5.03
54 55 1.070445 GAGGGGATCATCTGCCACG 59.930 63.158 0.00 0.00 37.00 4.94
63 64 4.418395 AAAAGGGAAAATGAGGGGATCA 57.582 40.909 0.00 0.00 43.70 2.92
66 67 4.358614 TCCTAAAAAGGGAAAATGAGGGGA 59.641 41.667 0.00 0.00 0.00 4.81
73 74 5.475909 GGTCGTCTTCCTAAAAAGGGAAAAT 59.524 40.000 0.00 0.00 41.58 1.82
74 75 4.823442 GGTCGTCTTCCTAAAAAGGGAAAA 59.177 41.667 0.00 0.00 41.58 2.29
105 106 7.406916 AGACTCTCTTACAACTCTAATGGAGA 58.593 38.462 0.00 0.00 44.45 3.71
107 108 8.423906 AAAGACTCTCTTACAACTCTAATGGA 57.576 34.615 0.00 0.00 35.27 3.41
118 119 6.183360 TGTGTGGATCAAAAGACTCTCTTACA 60.183 38.462 0.00 0.00 35.27 2.41
122 123 4.963318 TGTGTGGATCAAAAGACTCTCT 57.037 40.909 0.00 0.00 0.00 3.10
123 124 6.566197 AATTGTGTGGATCAAAAGACTCTC 57.434 37.500 0.00 0.00 0.00 3.20
160 161 4.446311 GGGGCATTTGAATAGGCTCTTCTA 60.446 45.833 13.02 3.74 0.00 2.10
162 163 2.625314 GGGGCATTTGAATAGGCTCTTC 59.375 50.000 5.73 5.73 0.00 2.87
163 164 2.670939 GGGGCATTTGAATAGGCTCTT 58.329 47.619 0.00 0.00 0.00 2.85
214 215 0.598680 CAAAAATTGTCGGCCCGCAA 60.599 50.000 13.78 13.78 0.00 4.85
215 216 1.006805 CAAAAATTGTCGGCCCGCA 60.007 52.632 0.00 0.00 0.00 5.69
219 220 1.375396 GGGGCAAAAATTGTCGGCC 60.375 57.895 0.00 0.00 43.86 6.13
222 223 1.006805 TGCGGGGCAAAAATTGTCG 60.007 52.632 0.00 0.00 35.72 4.35
232 233 0.889638 TTTTAATCACGTGCGGGGCA 60.890 50.000 11.67 0.00 35.60 5.36
237 238 0.802494 AGCCCTTTTAATCACGTGCG 59.198 50.000 11.67 0.00 0.00 5.34
238 239 1.810151 TCAGCCCTTTTAATCACGTGC 59.190 47.619 11.67 0.00 0.00 5.34
242 243 2.163613 CCGGTTCAGCCCTTTTAATCAC 59.836 50.000 0.00 0.00 0.00 3.06
268 269 4.196778 TTGTTCTGTGGCGGGGCA 62.197 61.111 0.00 0.00 0.00 5.36
270 271 2.672996 CCTTGTTCTGTGGCGGGG 60.673 66.667 0.00 0.00 0.00 5.73
295 296 0.594796 GTCAACACGCCTGGCTTTTG 60.595 55.000 17.92 15.72 0.00 2.44
299 300 4.988598 CCGTCAACACGCCTGGCT 62.989 66.667 17.92 0.55 45.29 4.75
302 303 2.279851 TGACCGTCAACACGCCTG 60.280 61.111 0.00 0.00 45.29 4.85
303 304 2.279918 GTGACCGTCAACACGCCT 60.280 61.111 1.88 0.00 45.29 5.52
307 308 0.802994 TGTGTCGTGACCGTCAACAC 60.803 55.000 21.87 21.87 38.85 3.32
309 310 0.299597 GTTGTGTCGTGACCGTCAAC 59.700 55.000 1.88 0.00 34.08 3.18
311 312 1.227031 GGTTGTGTCGTGACCGTCA 60.227 57.895 0.00 0.00 35.01 4.35
313 314 1.963464 AAGGGTTGTGTCGTGACCGT 61.963 55.000 0.00 0.00 34.22 4.83
315 316 1.064952 CAAAAGGGTTGTGTCGTGACC 59.935 52.381 0.00 0.00 0.00 4.02
320 321 2.349438 CGTCATCAAAAGGGTTGTGTCG 60.349 50.000 0.00 0.00 0.00 4.35
1000 1001 1.135083 TCGGAAGGCGAGAGATTGTTC 60.135 52.381 0.00 0.00 0.00 3.18
1009 3018 1.523938 GGGGAAATCGGAAGGCGAG 60.524 63.158 0.00 0.00 0.00 5.03
1042 3052 2.122189 GAGATGGGGGAGAGGGGG 60.122 72.222 0.00 0.00 0.00 5.40
1105 3119 2.110967 CCATCAGTCGGGCAGCAAG 61.111 63.158 0.00 0.00 0.00 4.01
1180 3194 2.579410 AACTAACAGACCGGGCAATT 57.421 45.000 11.69 5.50 0.00 2.32
1196 3210 3.302870 CGAACGAATCAAACACCGAAACT 60.303 43.478 0.00 0.00 0.00 2.66
1222 3236 0.865769 CTTTCACGGGGTGTTCGAAG 59.134 55.000 0.00 0.00 34.79 3.79
1230 3244 3.448301 TGATTACGATACTTTCACGGGGT 59.552 43.478 0.00 0.00 0.00 4.95
1236 3250 8.038944 AGGTAAAAGCTGATTACGATACTTTCA 58.961 33.333 13.54 0.00 34.74 2.69
1237 3251 8.421673 AGGTAAAAGCTGATTACGATACTTTC 57.578 34.615 13.54 1.97 34.74 2.62
1238 3252 7.222224 CGAGGTAAAAGCTGATTACGATACTTT 59.778 37.037 13.54 0.00 34.74 2.66
1243 3258 3.802685 GCGAGGTAAAAGCTGATTACGAT 59.197 43.478 13.54 7.33 34.74 3.73
1351 3367 5.429681 TTAACCAAATCGGGATTCTCAGA 57.570 39.130 0.00 0.00 40.22 3.27
1352 3368 5.239525 GGATTAACCAAATCGGGATTCTCAG 59.760 44.000 0.00 0.00 44.32 3.35
1354 3370 4.213482 CGGATTAACCAAATCGGGATTCTC 59.787 45.833 0.00 0.00 44.32 2.87
1355 3371 4.134563 CGGATTAACCAAATCGGGATTCT 58.865 43.478 0.00 0.00 44.32 2.40
1362 3391 0.655733 AGCGCGGATTAACCAAATCG 59.344 50.000 8.83 0.00 44.32 3.34
1381 3410 6.270815 CGTCTACTAGCTAGTAAAAATGGCA 58.729 40.000 28.85 10.37 38.24 4.92
1502 3564 2.844348 AGAAGGCTCGGATTAAAGGGAA 59.156 45.455 0.00 0.00 0.00 3.97
1513 3575 2.328099 GGCACAACAGAAGGCTCGG 61.328 63.158 0.00 0.00 0.00 4.63
1539 3601 6.463995 TGAAAGGTATTCACATATTTGCCC 57.536 37.500 0.00 0.00 0.00 5.36
1585 3829 5.695363 CGTCAGATCTGCATTTAGATGACAT 59.305 40.000 18.36 0.00 36.90 3.06
1592 3836 5.592054 TCTTACCGTCAGATCTGCATTTAG 58.408 41.667 18.36 10.28 0.00 1.85
1645 3889 7.339466 GCTTACTTTTCTCATCCCCATTTTCTA 59.661 37.037 0.00 0.00 0.00 2.10
1771 4022 6.015010 TGACCAAATTAGGGTTTTGTGTATGG 60.015 38.462 3.45 0.00 39.19 2.74
1837 4088 2.026822 AGGAGCACAAACACTATCCCAG 60.027 50.000 0.00 0.00 0.00 4.45
1867 4118 2.945668 GCTCACAGTTTGACAAGGTTCT 59.054 45.455 0.00 0.00 0.00 3.01
1902 4153 7.814107 CACACATTTGCACTAAATATGAAGGTT 59.186 33.333 0.00 0.00 35.64 3.50
2304 4556 0.035056 ATTCCCTGGAGAAAGCCACG 60.035 55.000 0.00 0.00 33.52 4.94
2360 4612 8.046294 TGTACACAACTGTTACAAGTTTCAAT 57.954 30.769 0.00 0.00 38.34 2.57
2473 4725 1.338107 AAAAGGCTTGTAAGTGGCCC 58.662 50.000 0.00 0.00 46.31 5.80
2508 4760 4.005487 TGTGAATTGCCAAAATTCAGGG 57.995 40.909 12.49 0.00 44.46 4.45
2566 4818 2.651382 ATTGCATATGAGCTGGCTGA 57.349 45.000 6.97 0.00 34.99 4.26
2609 4861 4.201950 GCAGGAATGCCACATACAACTAAG 60.202 45.833 0.00 0.00 36.29 2.18
2726 4978 0.324943 GGGTTCTGACTGCTGCCTTA 59.675 55.000 0.00 0.00 0.00 2.69
2783 5035 6.154534 AGGTAGAAATGCAGATGTACACAGTA 59.845 38.462 0.00 0.00 0.00 2.74
3239 5495 8.132362 TGAATAAACACCAAAACATGACACTAC 58.868 33.333 0.00 0.00 0.00 2.73
3360 5616 7.514721 TCTTAAAAAGTGGGACAGTATGAGTT 58.485 34.615 0.00 0.00 43.84 3.01
3488 5744 8.757982 AAGGTAGCAATAGAATGAATCATGTT 57.242 30.769 0.00 0.00 0.00 2.71
3605 5862 8.635765 ACTGCTTAAATTATCTTTGAACCTCA 57.364 30.769 0.00 0.00 0.00 3.86
3707 5964 1.631405 TCAAGGTGCAAAATCAGGGG 58.369 50.000 0.00 0.00 0.00 4.79
3723 5980 4.859304 AGAGAAAGCATGCACATTTCAA 57.141 36.364 24.48 0.00 35.79 2.69
3758 6015 5.799213 ACAAGTATTTTCAGACAGAGGGAG 58.201 41.667 0.00 0.00 0.00 4.30
3759 6016 5.825593 ACAAGTATTTTCAGACAGAGGGA 57.174 39.130 0.00 0.00 0.00 4.20
3760 6017 9.319143 CTAATACAAGTATTTTCAGACAGAGGG 57.681 37.037 10.41 0.00 37.07 4.30
3821 6078 9.793259 GTCCTAGAAATGGATAAAATGGATGTA 57.207 33.333 0.00 0.00 35.87 2.29
3822 6079 8.281531 TGTCCTAGAAATGGATAAAATGGATGT 58.718 33.333 0.00 0.00 35.87 3.06
3823 6080 8.696043 TGTCCTAGAAATGGATAAAATGGATG 57.304 34.615 0.00 0.00 35.87 3.51
3824 6081 9.359653 CTTGTCCTAGAAATGGATAAAATGGAT 57.640 33.333 0.00 0.00 34.98 3.41
3825 6082 8.336235 ACTTGTCCTAGAAATGGATAAAATGGA 58.664 33.333 0.00 0.00 34.98 3.41
3826 6083 8.525290 ACTTGTCCTAGAAATGGATAAAATGG 57.475 34.615 0.00 0.00 34.98 3.16
3833 6090 7.995488 CCAGAAATACTTGTCCTAGAAATGGAT 59.005 37.037 0.00 0.00 35.87 3.41
3834 6091 7.182026 TCCAGAAATACTTGTCCTAGAAATGGA 59.818 37.037 0.00 0.00 0.00 3.41
3835 6092 7.281100 GTCCAGAAATACTTGTCCTAGAAATGG 59.719 40.741 0.00 0.00 0.00 3.16
3836 6093 7.010552 CGTCCAGAAATACTTGTCCTAGAAATG 59.989 40.741 0.00 0.00 0.00 2.32
3837 6094 7.042335 CGTCCAGAAATACTTGTCCTAGAAAT 58.958 38.462 0.00 0.00 0.00 2.17
3838 6095 6.395629 CGTCCAGAAATACTTGTCCTAGAAA 58.604 40.000 0.00 0.00 0.00 2.52
3839 6096 5.105473 CCGTCCAGAAATACTTGTCCTAGAA 60.105 44.000 0.00 0.00 0.00 2.10
3840 6097 4.401519 CCGTCCAGAAATACTTGTCCTAGA 59.598 45.833 0.00 0.00 0.00 2.43
3841 6098 4.401519 TCCGTCCAGAAATACTTGTCCTAG 59.598 45.833 0.00 0.00 0.00 3.02
3842 6099 4.346730 TCCGTCCAGAAATACTTGTCCTA 58.653 43.478 0.00 0.00 0.00 2.94
3843 6100 3.170717 TCCGTCCAGAAATACTTGTCCT 58.829 45.455 0.00 0.00 0.00 3.85
3844 6101 3.522553 CTCCGTCCAGAAATACTTGTCC 58.477 50.000 0.00 0.00 0.00 4.02
3845 6102 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
3846 6103 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
3847 6104 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
3848 6105 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
3849 6106 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
3850 6107 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
3851 6108 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
3852 6109 2.544844 TACTCCCTCCGTCCAGAAAT 57.455 50.000 0.00 0.00 0.00 2.17
3853 6110 2.314071 TTACTCCCTCCGTCCAGAAA 57.686 50.000 0.00 0.00 0.00 2.52
3854 6111 2.314071 TTTACTCCCTCCGTCCAGAA 57.686 50.000 0.00 0.00 0.00 3.02
3855 6112 2.544844 ATTTACTCCCTCCGTCCAGA 57.455 50.000 0.00 0.00 0.00 3.86
3856 6113 2.766828 AGAATTTACTCCCTCCGTCCAG 59.233 50.000 0.00 0.00 0.00 3.86
3857 6114 2.829023 AGAATTTACTCCCTCCGTCCA 58.171 47.619 0.00 0.00 0.00 4.02
3858 6115 3.908643 AAGAATTTACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
3859 6116 5.334724 TGTAAGAATTTACTCCCTCCGTC 57.665 43.478 0.00 0.00 39.90 4.79
3860 6117 5.661759 AGATGTAAGAATTTACTCCCTCCGT 59.338 40.000 0.00 0.00 39.90 4.69
3861 6118 6.163135 AGATGTAAGAATTTACTCCCTCCG 57.837 41.667 0.00 0.00 39.90 4.63
3862 6119 6.261158 GCAAGATGTAAGAATTTACTCCCTCC 59.739 42.308 0.00 0.00 39.90 4.30
3863 6120 7.051000 AGCAAGATGTAAGAATTTACTCCCTC 58.949 38.462 0.00 0.00 39.90 4.30
3864 6121 6.963322 AGCAAGATGTAAGAATTTACTCCCT 58.037 36.000 0.00 0.00 39.90 4.20
3865 6122 7.988028 AGTAGCAAGATGTAAGAATTTACTCCC 59.012 37.037 0.00 0.00 39.90 4.30
3866 6123 8.950208 AGTAGCAAGATGTAAGAATTTACTCC 57.050 34.615 0.00 0.00 39.90 3.85
3871 6128 9.817809 TCGAATAGTAGCAAGATGTAAGAATTT 57.182 29.630 0.00 0.00 0.00 1.82
3913 6170 5.863397 CCAACAAAATTCATAGCATTGTCGT 59.137 36.000 0.00 0.00 33.39 4.34
3947 6204 5.471797 TGACGATAATTCTGGCAAGTTTTCA 59.528 36.000 0.00 0.00 0.00 2.69
3951 6208 4.832248 TCTGACGATAATTCTGGCAAGTT 58.168 39.130 0.00 0.00 0.00 2.66
4132 6389 4.817318 TGCAATGACAGAGTACATACCA 57.183 40.909 0.00 0.00 0.00 3.25
4160 6417 6.987386 TGAAAGACAAACCACAAAGAGAAAA 58.013 32.000 0.00 0.00 0.00 2.29
4427 6684 0.953727 AGCGCTTGAGTTGAAATGCA 59.046 45.000 2.64 0.00 0.00 3.96
4559 6816 2.236395 GGTAAGCCTACCAGCAGAGAAA 59.764 50.000 6.64 0.00 46.23 2.52
4603 6860 7.230849 TCCTGAAGCATGTGAAAATACAATT 57.769 32.000 0.00 0.00 33.69 2.32
4604 6861 6.839124 TCCTGAAGCATGTGAAAATACAAT 57.161 33.333 0.00 0.00 33.69 2.71
4649 6908 0.877071 AGCCAGAATGCTCAACAACG 59.123 50.000 0.00 0.00 36.75 4.10
4751 7010 8.239998 GTCTCATAAAAGCAAGAGCAACTAATT 58.760 33.333 0.00 0.00 45.49 1.40
4997 7258 7.815840 TGTTTCACCAATCTCAAACTTATCA 57.184 32.000 0.00 0.00 31.29 2.15
5048 7309 5.780282 TGAAGATCTCTTAGTTGGTTCCTCA 59.220 40.000 0.00 0.00 36.11 3.86
5292 7568 7.751732 TGTTTGCATAACATAAGACAGATGAC 58.248 34.615 9.46 0.00 0.00 3.06
5570 7861 2.846193 CCTTCGGTTTCTTCACCTTCA 58.154 47.619 0.00 0.00 34.22 3.02
5637 7928 1.497278 CCTCATCAACCGTGTTGCG 59.503 57.895 10.74 6.02 40.95 4.85
6039 8332 0.595095 CAACTGTGGGCTGCTCTTTC 59.405 55.000 0.00 0.00 0.00 2.62
6040 8333 0.183492 TCAACTGTGGGCTGCTCTTT 59.817 50.000 0.00 0.00 0.00 2.52
6046 8339 3.573967 AGGTTAAATTCAACTGTGGGCTG 59.426 43.478 0.00 0.00 0.00 4.85
6050 8343 4.022329 GGACCAGGTTAAATTCAACTGTGG 60.022 45.833 10.33 10.33 37.94 4.17
6081 8374 3.542712 ACAAGCTGCTACAAAATGACG 57.457 42.857 0.90 0.00 0.00 4.35
6090 8385 3.134458 ACTCTGTCAAACAAGCTGCTAC 58.866 45.455 0.90 0.00 0.00 3.58
6130 8425 5.050490 GCCTGTATGTGACTGGTGTATTAG 58.950 45.833 3.05 0.00 46.40 1.73
6164 8459 7.469537 TGTCCAGGAAAAGAAACAAAGTTTA 57.530 32.000 0.00 0.00 0.00 2.01
6186 8481 6.811253 TTCGCCAGTAATCAGTATTTTTGT 57.189 33.333 0.00 0.00 0.00 2.83
6206 8501 6.287107 TCTTTGCTACTTGTCTCTTTTTCG 57.713 37.500 0.00 0.00 0.00 3.46
6217 8512 5.650543 ACAGGTTTTGTTCTTTGCTACTTG 58.349 37.500 0.00 0.00 36.31 3.16
6235 8530 8.109634 AGAAATTCTGTAATATGGTGAACAGGT 58.890 33.333 0.00 0.00 39.80 4.00
6269 8564 5.244626 AGCAAACTGCCTGAATAAACTTGAT 59.755 36.000 0.00 0.00 46.52 2.57
6286 8581 1.473258 TTCAGCAACCACAGCAAACT 58.527 45.000 0.00 0.00 0.00 2.66
6334 8630 5.822132 ACAGCAGCATAGAATCCTAGAAT 57.178 39.130 0.00 0.00 0.00 2.40
6336 8632 6.924913 ATAACAGCAGCATAGAATCCTAGA 57.075 37.500 0.00 0.00 0.00 2.43
6382 8678 6.036517 CCATCAAGTATCTTACAGACAACTGC 59.963 42.308 0.00 0.00 46.95 4.40
6475 8808 6.070021 TCACTCCATCTGGAAATACTTGTCAT 60.070 38.462 0.00 0.00 44.91 3.06
6502 8835 0.319297 GCCCAAGCTGTTCTTTGCTG 60.319 55.000 0.00 0.00 39.71 4.41
6546 8880 8.963130 CAATTGAAGCAAGTTATAAACGTTTCA 58.037 29.630 18.42 3.82 36.23 2.69
6548 8882 9.522804 TTCAATTGAAGCAAGTTATAAACGTTT 57.477 25.926 18.90 18.90 36.23 3.60
6558 8892 4.039488 TGCTCCATTCAATTGAAGCAAGTT 59.961 37.500 23.70 6.93 37.48 2.66
6562 8896 2.494471 CCTGCTCCATTCAATTGAAGCA 59.506 45.455 24.09 24.09 37.48 3.91
6791 9134 1.075659 GCTGGGCTTCCCTCAAGTT 59.924 57.895 3.27 0.00 45.70 2.66
7031 9391 2.489971 GTGATGAAGAACCGGACAACA 58.510 47.619 9.46 6.72 0.00 3.33
7034 9394 0.323629 GGGTGATGAAGAACCGGACA 59.676 55.000 9.46 0.02 37.33 4.02
7076 9436 3.735029 GACGTGGAGTCGGAGCGT 61.735 66.667 0.00 0.00 40.43 5.07
7307 9667 6.566187 CGACGATCTACGAAAACATCCTCTAT 60.566 42.308 0.00 0.00 45.77 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.