Multiple sequence alignment - TraesCS6A01G264500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G264500 chr6A 100.000 2848 0 0 1 2848 488604045 488606892 0.000000e+00 5260
1 TraesCS6A01G264500 chr6A 92.929 198 11 1 526 723 578932463 578932657 4.640000e-73 285
2 TraesCS6A01G264500 chr6D 88.867 2021 76 34 734 2689 353651371 353649435 0.000000e+00 2348
3 TraesCS6A01G264500 chr6D 85.797 521 31 21 1 489 353651901 353651392 1.960000e-141 512
4 TraesCS6A01G264500 chr6B 90.993 1299 49 21 734 2013 524962771 524964020 0.000000e+00 1688
5 TraesCS6A01G264500 chr6B 86.278 634 41 25 2072 2689 524964027 524964630 0.000000e+00 647
6 TraesCS6A01G264500 chr6B 86.888 511 31 15 1 484 524962245 524962746 8.980000e-150 540
7 TraesCS6A01G264500 chr4A 93.069 202 10 2 526 726 689648887 689648689 2.780000e-75 292
8 TraesCS6A01G264500 chr4A 87.854 247 22 6 482 724 542919509 542919267 1.670000e-72 283
9 TraesCS6A01G264500 chr5A 93.035 201 11 1 526 726 347015919 347015722 9.980000e-75 291
10 TraesCS6A01G264500 chr5A 92.079 202 13 1 525 726 421861667 421861469 6.010000e-72 281
11 TraesCS6A01G264500 chr5A 87.029 239 23 6 490 723 3423641 3423876 2.180000e-66 263
12 TraesCS6A01G264500 chr3A 92.929 198 11 1 526 723 690072280 690072474 4.640000e-73 285
13 TraesCS6A01G264500 chr3A 90.865 208 16 3 526 733 537514818 537515022 2.790000e-70 276
14 TraesCS6A01G264500 chr1A 92.040 201 13 1 526 726 571583308 571583111 2.160000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G264500 chr6A 488604045 488606892 2847 False 5260.000000 5260 100.000 1 2848 1 chr6A.!!$F1 2847
1 TraesCS6A01G264500 chr6D 353649435 353651901 2466 True 1430.000000 2348 87.332 1 2689 2 chr6D.!!$R1 2688
2 TraesCS6A01G264500 chr6B 524962245 524964630 2385 False 958.333333 1688 88.053 1 2689 3 chr6B.!!$F1 2688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
412 450 0.104304 GCCTTATCTTTCGAGCCCGA 59.896 55.0 0.0 0.0 43.96 5.14 F
1084 1143 0.041312 GAGAGAGCGAGCGAGTCATC 60.041 60.0 0.0 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 1904 0.036010 CCAGATCACAGGCTTTCGGT 60.036 55.0 0.0 0.0 0.0 4.69 R
2168 2229 0.179111 ATGATAGTGGTGCCGTCGTG 60.179 55.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 193 1.836383 CTCCCGTGCGTGTAGAATAC 58.164 55.000 0.00 0.00 43.42 1.89
163 194 1.404391 CTCCCGTGCGTGTAGAATACT 59.596 52.381 0.00 0.00 43.54 2.12
164 195 2.615447 CTCCCGTGCGTGTAGAATACTA 59.385 50.000 0.00 0.00 43.54 1.82
182 213 4.644044 ACTAGACGCGATAACTACGATC 57.356 45.455 15.93 0.00 0.00 3.69
188 219 0.385098 CGATAACTACGATCCGCGCA 60.385 55.000 8.75 0.00 46.04 6.09
219 250 2.244436 CTGCGAGATTGCAACCGGTG 62.244 60.000 8.52 3.35 45.74 4.94
220 251 2.032634 GCGAGATTGCAACCGGTGA 61.033 57.895 8.52 0.00 34.15 4.02
221 252 1.787847 CGAGATTGCAACCGGTGAC 59.212 57.895 8.52 3.46 0.00 3.67
222 253 0.670546 CGAGATTGCAACCGGTGACT 60.671 55.000 8.52 1.15 0.00 3.41
223 254 1.079503 GAGATTGCAACCGGTGACTC 58.920 55.000 8.52 7.48 0.00 3.36
224 255 0.687354 AGATTGCAACCGGTGACTCT 59.313 50.000 8.52 3.57 0.00 3.24
225 256 0.798776 GATTGCAACCGGTGACTCTG 59.201 55.000 8.52 2.59 0.00 3.35
226 257 1.237285 ATTGCAACCGGTGACTCTGC 61.237 55.000 19.11 19.11 0.00 4.26
227 258 2.280797 GCAACCGGTGACTCTGCA 60.281 61.111 20.61 0.00 33.19 4.41
228 259 2.320587 GCAACCGGTGACTCTGCAG 61.321 63.158 20.61 7.63 33.19 4.41
322 360 2.648102 GTCTCGGTCGCATCGTCG 60.648 66.667 0.00 0.00 0.00 5.12
356 394 1.153229 GCCCATCGTAACTGACCCC 60.153 63.158 0.00 0.00 0.00 4.95
409 447 0.940833 GCAGCCTTATCTTTCGAGCC 59.059 55.000 0.00 0.00 0.00 4.70
411 449 0.105039 AGCCTTATCTTTCGAGCCCG 59.895 55.000 0.00 0.00 37.07 6.13
412 450 0.104304 GCCTTATCTTTCGAGCCCGA 59.896 55.000 0.00 0.00 43.96 5.14
413 451 1.870167 GCCTTATCTTTCGAGCCCGAG 60.870 57.143 0.00 0.00 46.39 4.63
469 507 0.737367 CTCGCCGTTGCTCAGAATCA 60.737 55.000 0.00 0.00 34.43 2.57
472 510 1.005340 GCCGTTGCTCAGAATCAGAG 58.995 55.000 0.00 0.00 36.21 3.35
484 522 5.485620 TCAGAATCAGAGTGGAGATTTGTG 58.514 41.667 0.00 0.00 34.79 3.33
485 523 4.094590 CAGAATCAGAGTGGAGATTTGTGC 59.905 45.833 0.00 0.00 34.79 4.57
486 524 3.996921 ATCAGAGTGGAGATTTGTGCT 57.003 42.857 0.00 0.00 0.00 4.40
487 525 5.188555 AGAATCAGAGTGGAGATTTGTGCTA 59.811 40.000 0.00 0.00 34.79 3.49
488 526 4.462508 TCAGAGTGGAGATTTGTGCTAG 57.537 45.455 0.00 0.00 0.00 3.42
489 527 3.834813 TCAGAGTGGAGATTTGTGCTAGT 59.165 43.478 0.00 0.00 0.00 2.57
491 529 5.105716 TCAGAGTGGAGATTTGTGCTAGTAC 60.106 44.000 3.70 3.70 0.00 2.73
492 530 5.020132 AGAGTGGAGATTTGTGCTAGTACT 58.980 41.667 12.42 0.00 0.00 2.73
493 531 5.126384 AGAGTGGAGATTTGTGCTAGTACTC 59.874 44.000 12.42 1.80 0.00 2.59
494 532 4.160626 AGTGGAGATTTGTGCTAGTACTCC 59.839 45.833 12.42 10.31 41.61 3.85
496 534 4.402793 TGGAGATTTGTGCTAGTACTCCTC 59.597 45.833 12.42 11.58 41.73 3.71
499 537 1.471119 TTGTGCTAGTACTCCTCCGG 58.529 55.000 12.42 0.00 0.00 5.14
501 539 1.023502 GTGCTAGTACTCCTCCGGTC 58.976 60.000 0.00 0.00 0.00 4.79
502 540 0.622136 TGCTAGTACTCCTCCGGTCA 59.378 55.000 0.00 0.00 0.00 4.02
503 541 1.214673 TGCTAGTACTCCTCCGGTCAT 59.785 52.381 0.00 0.00 0.00 3.06
504 542 2.308690 GCTAGTACTCCTCCGGTCATT 58.691 52.381 0.00 0.00 0.00 2.57
505 543 2.694109 GCTAGTACTCCTCCGGTCATTT 59.306 50.000 0.00 0.00 0.00 2.32
507 545 4.382793 GCTAGTACTCCTCCGGTCATTTTT 60.383 45.833 0.00 0.00 0.00 1.94
508 546 5.163478 GCTAGTACTCCTCCGGTCATTTTTA 60.163 44.000 0.00 0.00 0.00 1.52
509 547 5.952347 AGTACTCCTCCGGTCATTTTTAT 57.048 39.130 0.00 0.00 0.00 1.40
510 548 6.309389 AGTACTCCTCCGGTCATTTTTATT 57.691 37.500 0.00 0.00 0.00 1.40
511 549 6.346896 AGTACTCCTCCGGTCATTTTTATTC 58.653 40.000 0.00 0.00 0.00 1.75
512 550 5.437191 ACTCCTCCGGTCATTTTTATTCT 57.563 39.130 0.00 0.00 0.00 2.40
513 551 5.186198 ACTCCTCCGGTCATTTTTATTCTG 58.814 41.667 0.00 0.00 0.00 3.02
514 552 3.945285 TCCTCCGGTCATTTTTATTCTGC 59.055 43.478 0.00 0.00 0.00 4.26
515 553 3.694072 CCTCCGGTCATTTTTATTCTGCA 59.306 43.478 0.00 0.00 0.00 4.41
516 554 4.339247 CCTCCGGTCATTTTTATTCTGCAT 59.661 41.667 0.00 0.00 0.00 3.96
517 555 5.530915 CCTCCGGTCATTTTTATTCTGCATA 59.469 40.000 0.00 0.00 0.00 3.14
518 556 6.207417 CCTCCGGTCATTTTTATTCTGCATAT 59.793 38.462 0.00 0.00 0.00 1.78
519 557 7.255590 CCTCCGGTCATTTTTATTCTGCATATT 60.256 37.037 0.00 0.00 0.00 1.28
520 558 8.684386 TCCGGTCATTTTTATTCTGCATATTA 57.316 30.769 0.00 0.00 0.00 0.98
521 559 8.783093 TCCGGTCATTTTTATTCTGCATATTAG 58.217 33.333 0.00 0.00 0.00 1.73
522 560 8.783093 CCGGTCATTTTTATTCTGCATATTAGA 58.217 33.333 0.00 0.00 0.00 2.10
523 561 9.817365 CGGTCATTTTTATTCTGCATATTAGAG 57.183 33.333 0.00 0.00 0.00 2.43
565 603 8.657074 ATGAAAAATTATCAACATCTGCCATG 57.343 30.769 0.00 0.00 0.00 3.66
566 604 6.535865 TGAAAAATTATCAACATCTGCCATGC 59.464 34.615 0.00 0.00 0.00 4.06
567 605 5.864418 AAATTATCAACATCTGCCATGCT 57.136 34.783 0.00 0.00 0.00 3.79
568 606 6.964807 AAATTATCAACATCTGCCATGCTA 57.035 33.333 0.00 0.00 0.00 3.49
569 607 6.964807 AATTATCAACATCTGCCATGCTAA 57.035 33.333 0.00 0.00 0.00 3.09
570 608 6.964807 ATTATCAACATCTGCCATGCTAAA 57.035 33.333 0.00 0.00 0.00 1.85
571 609 4.913335 ATCAACATCTGCCATGCTAAAG 57.087 40.909 0.00 0.00 0.00 1.85
572 610 3.689347 TCAACATCTGCCATGCTAAAGT 58.311 40.909 0.00 0.00 0.00 2.66
573 611 4.081406 TCAACATCTGCCATGCTAAAGTT 58.919 39.130 0.00 0.00 0.00 2.66
574 612 5.252547 TCAACATCTGCCATGCTAAAGTTA 58.747 37.500 0.00 0.00 0.00 2.24
575 613 5.887598 TCAACATCTGCCATGCTAAAGTTAT 59.112 36.000 0.00 0.00 0.00 1.89
576 614 7.053498 TCAACATCTGCCATGCTAAAGTTATA 58.947 34.615 0.00 0.00 0.00 0.98
577 615 6.867662 ACATCTGCCATGCTAAAGTTATAC 57.132 37.500 0.00 0.00 0.00 1.47
578 616 6.356556 ACATCTGCCATGCTAAAGTTATACA 58.643 36.000 0.00 0.00 0.00 2.29
579 617 6.828273 ACATCTGCCATGCTAAAGTTATACAA 59.172 34.615 0.00 0.00 0.00 2.41
580 618 7.503566 ACATCTGCCATGCTAAAGTTATACAAT 59.496 33.333 0.00 0.00 0.00 2.71
581 619 9.002600 CATCTGCCATGCTAAAGTTATACAATA 57.997 33.333 0.00 0.00 0.00 1.90
582 620 8.378172 TCTGCCATGCTAAAGTTATACAATAC 57.622 34.615 0.00 0.00 0.00 1.89
583 621 8.210946 TCTGCCATGCTAAAGTTATACAATACT 58.789 33.333 0.00 0.00 0.00 2.12
584 622 9.489084 CTGCCATGCTAAAGTTATACAATACTA 57.511 33.333 0.00 0.00 0.00 1.82
606 644 8.902540 ACTATGAAACTTTAAGTCATGACACA 57.097 30.769 27.02 11.66 34.01 3.72
607 645 9.507329 ACTATGAAACTTTAAGTCATGACACAT 57.493 29.630 27.02 14.99 34.01 3.21
608 646 9.979270 CTATGAAACTTTAAGTCATGACACATC 57.021 33.333 27.02 13.13 34.01 3.06
609 647 8.627208 ATGAAACTTTAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
610 648 8.450578 TGAAACTTTAAGTCATGACACATCTT 57.549 30.769 27.02 14.49 0.00 2.40
611 649 8.902806 TGAAACTTTAAGTCATGACACATCTTT 58.097 29.630 27.02 15.54 0.00 2.52
612 650 9.736023 GAAACTTTAAGTCATGACACATCTTTT 57.264 29.630 27.02 17.52 0.00 2.27
678 716 6.937436 AAATTGGTCAAACTTTACGAGACT 57.063 33.333 0.00 0.00 0.00 3.24
679 717 6.937436 AATTGGTCAAACTTTACGAGACTT 57.063 33.333 0.00 0.00 0.00 3.01
680 718 5.728351 TTGGTCAAACTTTACGAGACTTG 57.272 39.130 0.00 0.00 0.00 3.16
681 719 5.013568 TGGTCAAACTTTACGAGACTTGA 57.986 39.130 0.00 0.00 32.31 3.02
682 720 4.807304 TGGTCAAACTTTACGAGACTTGAC 59.193 41.667 0.00 12.80 43.34 3.18
683 721 5.048507 GGTCAAACTTTACGAGACTTGACT 58.951 41.667 17.00 0.00 43.45 3.41
684 722 5.522824 GGTCAAACTTTACGAGACTTGACTT 59.477 40.000 17.00 0.00 43.45 3.01
685 723 6.292221 GGTCAAACTTTACGAGACTTGACTTC 60.292 42.308 17.00 6.26 43.45 3.01
686 724 6.255020 GTCAAACTTTACGAGACTTGACTTCA 59.745 38.462 0.00 0.00 42.23 3.02
687 725 6.475727 TCAAACTTTACGAGACTTGACTTCAG 59.524 38.462 0.00 0.00 30.89 3.02
688 726 5.517322 ACTTTACGAGACTTGACTTCAGT 57.483 39.130 0.00 0.00 0.00 3.41
689 727 5.521544 ACTTTACGAGACTTGACTTCAGTC 58.478 41.667 0.00 0.00 44.97 3.51
704 742 7.700322 GACTTCAGTCAAATCTTATATGCGA 57.300 36.000 1.86 0.00 44.18 5.10
705 743 8.131455 GACTTCAGTCAAATCTTATATGCGAA 57.869 34.615 1.86 0.00 44.18 4.70
706 744 7.910304 ACTTCAGTCAAATCTTATATGCGAAC 58.090 34.615 0.00 0.00 0.00 3.95
707 745 7.766278 ACTTCAGTCAAATCTTATATGCGAACT 59.234 33.333 0.00 0.00 0.00 3.01
708 746 9.249457 CTTCAGTCAAATCTTATATGCGAACTA 57.751 33.333 0.00 0.00 0.00 2.24
709 747 9.594478 TTCAGTCAAATCTTATATGCGAACTAA 57.406 29.630 0.00 0.00 0.00 2.24
710 748 9.594478 TCAGTCAAATCTTATATGCGAACTAAA 57.406 29.630 0.00 0.00 0.00 1.85
715 753 8.958043 CAAATCTTATATGCGAACTAAAAAGGC 58.042 33.333 0.00 0.00 0.00 4.35
716 754 6.613755 TCTTATATGCGAACTAAAAAGGCC 57.386 37.500 0.00 0.00 0.00 5.19
717 755 5.529800 TCTTATATGCGAACTAAAAAGGCCC 59.470 40.000 0.00 0.00 0.00 5.80
718 756 0.808755 ATGCGAACTAAAAAGGCCCG 59.191 50.000 0.00 0.00 0.00 6.13
719 757 1.238625 TGCGAACTAAAAAGGCCCGG 61.239 55.000 0.00 0.00 0.00 5.73
720 758 0.956902 GCGAACTAAAAAGGCCCGGA 60.957 55.000 0.73 0.00 0.00 5.14
721 759 1.084289 CGAACTAAAAAGGCCCGGAG 58.916 55.000 0.73 0.00 0.00 4.63
750 788 4.385825 AGTACAAACAAATCGGAAGCTGA 58.614 39.130 0.00 0.00 0.00 4.26
764 802 3.126686 GGAAGCTGATTCTTTGCTCAGTC 59.873 47.826 5.56 0.00 40.80 3.51
765 803 3.413846 AGCTGATTCTTTGCTCAGTCA 57.586 42.857 0.00 0.00 40.80 3.41
766 804 3.336468 AGCTGATTCTTTGCTCAGTCAG 58.664 45.455 0.00 0.00 40.80 3.51
770 808 4.903054 TGATTCTTTGCTCAGTCAGATGT 58.097 39.130 0.00 0.00 0.00 3.06
772 810 3.758755 TCTTTGCTCAGTCAGATGTGT 57.241 42.857 0.00 0.00 0.00 3.72
773 811 3.396560 TCTTTGCTCAGTCAGATGTGTG 58.603 45.455 0.00 0.00 0.00 3.82
774 812 3.070015 TCTTTGCTCAGTCAGATGTGTGA 59.930 43.478 0.00 0.00 0.00 3.58
796 834 1.854743 CTACACGTCCTGAATGATGCG 59.145 52.381 0.00 0.00 0.00 4.73
799 837 1.078709 ACGTCCTGAATGATGCGTTG 58.921 50.000 0.00 0.00 0.00 4.10
809 847 2.087501 TGATGCGTTGTCATACGGTT 57.912 45.000 0.00 0.00 41.65 4.44
810 848 1.996898 TGATGCGTTGTCATACGGTTC 59.003 47.619 0.00 0.00 41.65 3.62
812 850 3.119424 TGATGCGTTGTCATACGGTTCTA 60.119 43.478 0.00 0.00 41.65 2.10
813 851 2.871133 TGCGTTGTCATACGGTTCTAG 58.129 47.619 0.00 0.00 41.65 2.43
817 855 4.201851 GCGTTGTCATACGGTTCTAGTAGA 60.202 45.833 0.00 0.00 41.65 2.59
821 859 7.042187 CGTTGTCATACGGTTCTAGTAGACTAT 60.042 40.741 0.00 0.00 37.86 2.12
825 863 7.601886 GTCATACGGTTCTAGTAGACTATAGCA 59.398 40.741 0.00 0.00 0.00 3.49
888 926 3.031417 GCTGTACCCGATGGCACCT 62.031 63.158 0.00 0.00 33.59 4.00
903 941 0.368907 CACCTTCGTGAATAACCGCG 59.631 55.000 0.00 0.00 43.14 6.46
1064 1123 2.435805 GAGGCAGAGAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
1066 1125 2.435805 GGCAGAGAGAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
1068 1127 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
1070 1129 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
1071 1130 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
1072 1131 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
1073 1132 2.363680 AGAGAGAGAGAGAGAGAGAGCG 59.636 54.545 0.00 0.00 0.00 5.03
1074 1133 2.362397 GAGAGAGAGAGAGAGAGAGCGA 59.638 54.545 0.00 0.00 0.00 4.93
1075 1134 2.363680 AGAGAGAGAGAGAGAGAGCGAG 59.636 54.545 0.00 0.00 0.00 5.03
1076 1135 1.202580 AGAGAGAGAGAGAGAGCGAGC 60.203 57.143 0.00 0.00 0.00 5.03
1077 1136 0.530650 AGAGAGAGAGAGAGCGAGCG 60.531 60.000 0.00 0.00 0.00 5.03
1078 1137 0.529773 GAGAGAGAGAGAGCGAGCGA 60.530 60.000 0.00 0.00 0.00 4.93
1079 1138 0.530650 AGAGAGAGAGAGCGAGCGAG 60.531 60.000 0.00 0.00 0.00 5.03
1080 1139 0.810031 GAGAGAGAGAGCGAGCGAGT 60.810 60.000 0.00 0.00 0.00 4.18
1081 1140 0.810031 AGAGAGAGAGCGAGCGAGTC 60.810 60.000 0.00 0.00 0.00 3.36
1082 1141 1.078778 AGAGAGAGCGAGCGAGTCA 60.079 57.895 0.00 0.00 0.00 3.41
1083 1142 0.463654 AGAGAGAGCGAGCGAGTCAT 60.464 55.000 0.00 0.00 0.00 3.06
1084 1143 0.041312 GAGAGAGCGAGCGAGTCATC 60.041 60.000 0.00 0.00 0.00 2.92
1104 1163 4.717629 CGAGAGCAACCGCACGGA 62.718 66.667 17.40 0.00 42.27 4.69
1105 1164 2.811317 GAGAGCAACCGCACGGAG 60.811 66.667 17.40 8.92 42.27 4.63
1106 1165 4.379243 AGAGCAACCGCACGGAGG 62.379 66.667 17.40 8.18 42.27 4.30
1500 1559 3.003173 CCTCTGCCAAGGACGGGA 61.003 66.667 0.00 0.00 38.87 5.14
1562 1621 2.752238 AGGTCCAGCTCGGTCTCG 60.752 66.667 0.00 0.00 35.57 4.04
1728 1788 0.618968 ACCAGTGGGGGATCTGTCTC 60.619 60.000 15.21 0.00 42.91 3.36
1729 1789 0.326048 CCAGTGGGGGATCTGTCTCT 60.326 60.000 0.00 0.00 0.00 3.10
1730 1790 1.577736 CAGTGGGGGATCTGTCTCTT 58.422 55.000 0.00 0.00 0.00 2.85
1731 1791 1.209019 CAGTGGGGGATCTGTCTCTTG 59.791 57.143 0.00 0.00 0.00 3.02
1732 1792 0.107459 GTGGGGGATCTGTCTCTTGC 60.107 60.000 0.00 0.00 0.00 4.01
1733 1793 0.252881 TGGGGGATCTGTCTCTTGCT 60.253 55.000 0.00 0.00 0.00 3.91
1736 1796 2.637947 GGGGATCTGTCTCTTGCTTTC 58.362 52.381 0.00 0.00 0.00 2.62
1819 1879 1.809619 GGCTCGCGTGCTAATGTGA 60.810 57.895 29.41 0.00 0.00 3.58
1822 1882 1.190323 GCTCGCGTGCTAATGTGATAC 59.810 52.381 24.65 0.00 31.54 2.24
1860 1920 3.643159 AAAAACCGAAAGCCTGTGATC 57.357 42.857 0.00 0.00 0.00 2.92
1907 1967 2.125106 GCGGCGTCATTTCCTCCT 60.125 61.111 9.37 0.00 0.00 3.69
1924 1984 2.294512 CTCCTTGCTTTTGTTGTCCCTC 59.705 50.000 0.00 0.00 0.00 4.30
1969 2030 2.376109 CTCCACCGTGTAGTACCATCT 58.624 52.381 0.00 0.00 0.00 2.90
2009 2070 0.861837 CCGATTTGATCTGCGCTACC 59.138 55.000 9.73 0.00 0.00 3.18
2026 2087 2.683211 ACCTTCTTTCCAGCACCATT 57.317 45.000 0.00 0.00 0.00 3.16
2066 2127 3.513680 TGCATTGCATCCTTGATTGTC 57.486 42.857 7.38 0.00 31.71 3.18
2109 2170 6.156256 AGGATAAAAATTAGAAAACCCAGGCC 59.844 38.462 0.00 0.00 0.00 5.19
2136 2197 5.010314 TGAGACAGTTAAACACGATGGTACT 59.990 40.000 0.00 0.00 0.00 2.73
2137 2198 6.207221 TGAGACAGTTAAACACGATGGTACTA 59.793 38.462 0.00 0.00 0.00 1.82
2138 2199 6.385033 AGACAGTTAAACACGATGGTACTAC 58.615 40.000 0.00 0.00 0.00 2.73
2167 2228 3.193263 ACATCGATCAGCAGTTAAGCAG 58.807 45.455 0.00 0.00 36.85 4.24
2168 2229 1.645034 TCGATCAGCAGTTAAGCAGC 58.355 50.000 0.00 0.00 36.85 5.25
2169 2230 1.066929 TCGATCAGCAGTTAAGCAGCA 60.067 47.619 0.00 0.00 36.85 4.41
2194 2255 2.135933 GGCACCACTATCATTAGCGTC 58.864 52.381 0.00 0.00 0.00 5.19
2195 2256 1.787155 GCACCACTATCATTAGCGTCG 59.213 52.381 0.00 0.00 0.00 5.12
2198 2259 3.914966 CACCACTATCATTAGCGTCGATC 59.085 47.826 0.00 0.00 0.00 3.69
2262 2326 8.896744 TCCATTTATCTAGAGCTTTTCATGTTG 58.103 33.333 0.00 0.00 0.00 3.33
2272 2349 4.455877 AGCTTTTCATGTTGTGTACTAGGC 59.544 41.667 0.00 0.00 0.00 3.93
2275 2358 4.465632 TTCATGTTGTGTACTAGGCGAT 57.534 40.909 0.00 0.00 0.00 4.58
2309 2392 2.416836 GGATAGCAGCTTGTGTGTCGTA 60.417 50.000 0.00 0.00 0.00 3.43
2363 2446 3.964031 AGCAGGTTCAGGACTAGGAATAG 59.036 47.826 0.00 0.00 0.00 1.73
2451 2534 0.322008 GCAAGTGGTGAAGGAGAGGG 60.322 60.000 0.00 0.00 0.00 4.30
2468 2551 1.153549 GGCCCTTCGCTCAGTACTG 60.154 63.158 17.17 17.17 37.74 2.74
2571 2671 3.884693 TCTTCACGTTGTGGTCTAGTACA 59.115 43.478 0.00 0.00 33.87 2.90
2610 2710 2.546368 TGTTTCAACTCCCGTCGAAATG 59.454 45.455 0.00 0.00 30.68 2.32
2615 2715 3.682858 TCAACTCCCGTCGAAATGATTTC 59.317 43.478 7.83 7.83 36.32 2.17
2631 2731 3.306973 TGATTTCGAGCTCACTATTTGCG 59.693 43.478 15.40 0.00 0.00 4.85
2637 2737 0.657840 GCTCACTATTTGCGCCGATT 59.342 50.000 4.18 0.00 28.85 3.34
2654 2754 3.753272 CCGATTAGGTAATCATTGCCCAG 59.247 47.826 0.00 0.00 41.59 4.45
2658 2758 1.285962 AGGTAATCATTGCCCAGCAGT 59.714 47.619 0.00 0.00 40.61 4.40
2690 2790 3.165058 TCGTGGAATCTTTCGGAGATG 57.835 47.619 3.48 0.00 44.41 2.90
2691 2791 2.496070 TCGTGGAATCTTTCGGAGATGT 59.504 45.455 3.48 0.00 44.41 3.06
2692 2792 3.056107 TCGTGGAATCTTTCGGAGATGTT 60.056 43.478 3.48 0.00 44.41 2.71
2693 2793 3.307242 CGTGGAATCTTTCGGAGATGTTC 59.693 47.826 3.48 0.56 44.41 3.18
2694 2794 4.253685 GTGGAATCTTTCGGAGATGTTCA 58.746 43.478 3.48 1.41 44.41 3.18
2695 2795 4.878397 GTGGAATCTTTCGGAGATGTTCAT 59.122 41.667 3.48 0.00 44.41 2.57
2696 2796 6.049149 GTGGAATCTTTCGGAGATGTTCATA 58.951 40.000 3.48 0.00 44.41 2.15
2697 2797 6.201806 GTGGAATCTTTCGGAGATGTTCATAG 59.798 42.308 3.48 0.00 44.41 2.23
2698 2798 6.098266 TGGAATCTTTCGGAGATGTTCATAGA 59.902 38.462 3.48 0.00 44.41 1.98
2699 2799 6.422400 GGAATCTTTCGGAGATGTTCATAGAC 59.578 42.308 3.48 0.00 44.41 2.59
2700 2800 5.263968 TCTTTCGGAGATGTTCATAGACC 57.736 43.478 0.00 0.00 35.04 3.85
2701 2801 4.709886 TCTTTCGGAGATGTTCATAGACCA 59.290 41.667 0.00 0.00 35.04 4.02
2702 2802 5.186992 TCTTTCGGAGATGTTCATAGACCAA 59.813 40.000 0.00 0.00 35.04 3.67
2703 2803 5.414789 TTCGGAGATGTTCATAGACCAAA 57.585 39.130 0.00 0.00 35.04 3.28
2704 2804 5.414789 TCGGAGATGTTCATAGACCAAAA 57.585 39.130 0.00 0.00 0.00 2.44
2705 2805 5.800296 TCGGAGATGTTCATAGACCAAAAA 58.200 37.500 0.00 0.00 0.00 1.94
2706 2806 6.414732 TCGGAGATGTTCATAGACCAAAAAT 58.585 36.000 0.00 0.00 0.00 1.82
2707 2807 6.884295 TCGGAGATGTTCATAGACCAAAAATT 59.116 34.615 0.00 0.00 0.00 1.82
2708 2808 8.044309 TCGGAGATGTTCATAGACCAAAAATTA 58.956 33.333 0.00 0.00 0.00 1.40
2709 2809 8.673711 CGGAGATGTTCATAGACCAAAAATTAA 58.326 33.333 0.00 0.00 0.00 1.40
2745 2845 9.368674 CAGGATAGATGCTGTAGAGATAAAATG 57.631 37.037 3.04 0.00 40.79 2.32
2746 2846 8.040132 AGGATAGATGCTGTAGAGATAAAATGC 58.960 37.037 0.00 0.00 0.00 3.56
2747 2847 7.821359 GGATAGATGCTGTAGAGATAAAATGCA 59.179 37.037 0.00 0.00 0.00 3.96
2748 2848 8.774890 ATAGATGCTGTAGAGATAAAATGCAG 57.225 34.615 0.00 0.00 32.65 4.41
2749 2849 5.996513 AGATGCTGTAGAGATAAAATGCAGG 59.003 40.000 0.00 0.00 32.65 4.85
2750 2850 4.454678 TGCTGTAGAGATAAAATGCAGGG 58.545 43.478 0.00 0.00 0.00 4.45
2751 2851 4.164030 TGCTGTAGAGATAAAATGCAGGGA 59.836 41.667 0.00 0.00 0.00 4.20
2752 2852 4.754114 GCTGTAGAGATAAAATGCAGGGAG 59.246 45.833 0.00 0.00 0.00 4.30
2753 2853 5.296151 TGTAGAGATAAAATGCAGGGAGG 57.704 43.478 0.00 0.00 0.00 4.30
2754 2854 4.968719 TGTAGAGATAAAATGCAGGGAGGA 59.031 41.667 0.00 0.00 0.00 3.71
2755 2855 4.703379 AGAGATAAAATGCAGGGAGGAG 57.297 45.455 0.00 0.00 0.00 3.69
2756 2856 4.302067 AGAGATAAAATGCAGGGAGGAGA 58.698 43.478 0.00 0.00 0.00 3.71
2757 2857 4.723789 AGAGATAAAATGCAGGGAGGAGAA 59.276 41.667 0.00 0.00 0.00 2.87
2758 2858 5.192522 AGAGATAAAATGCAGGGAGGAGAAA 59.807 40.000 0.00 0.00 0.00 2.52
2759 2859 5.444176 AGATAAAATGCAGGGAGGAGAAAG 58.556 41.667 0.00 0.00 0.00 2.62
2760 2860 3.532641 AAAATGCAGGGAGGAGAAAGT 57.467 42.857 0.00 0.00 0.00 2.66
2761 2861 3.532641 AAATGCAGGGAGGAGAAAGTT 57.467 42.857 0.00 0.00 0.00 2.66
2762 2862 2.503895 ATGCAGGGAGGAGAAAGTTG 57.496 50.000 0.00 0.00 0.00 3.16
2763 2863 0.401738 TGCAGGGAGGAGAAAGTTGG 59.598 55.000 0.00 0.00 0.00 3.77
2764 2864 0.402121 GCAGGGAGGAGAAAGTTGGT 59.598 55.000 0.00 0.00 0.00 3.67
2765 2865 1.202940 GCAGGGAGGAGAAAGTTGGTT 60.203 52.381 0.00 0.00 0.00 3.67
2766 2866 2.753168 GCAGGGAGGAGAAAGTTGGTTT 60.753 50.000 0.00 0.00 0.00 3.27
2767 2867 3.149981 CAGGGAGGAGAAAGTTGGTTTC 58.850 50.000 0.00 0.00 44.48 2.78
2775 2875 3.604065 GAAAGTTGGTTTCGGTGAGAC 57.396 47.619 0.00 0.00 35.44 3.36
2776 2876 2.702592 AAGTTGGTTTCGGTGAGACA 57.297 45.000 0.00 0.00 0.00 3.41
2777 2877 2.240493 AGTTGGTTTCGGTGAGACAG 57.760 50.000 0.00 0.00 0.00 3.51
2778 2878 0.586802 GTTGGTTTCGGTGAGACAGC 59.413 55.000 0.00 0.00 0.00 4.40
2779 2879 0.179234 TTGGTTTCGGTGAGACAGCA 59.821 50.000 0.00 0.00 35.52 4.41
2780 2880 0.396435 TGGTTTCGGTGAGACAGCAT 59.604 50.000 0.00 0.00 32.76 3.79
2781 2881 1.079503 GGTTTCGGTGAGACAGCATC 58.920 55.000 0.00 0.00 0.00 3.91
2782 2882 1.338200 GGTTTCGGTGAGACAGCATCT 60.338 52.381 0.00 0.00 41.91 2.90
2783 2883 1.728971 GTTTCGGTGAGACAGCATCTG 59.271 52.381 0.00 0.00 38.00 2.90
2784 2884 1.256812 TTCGGTGAGACAGCATCTGA 58.743 50.000 0.29 0.00 38.00 3.27
2785 2885 0.813821 TCGGTGAGACAGCATCTGAG 59.186 55.000 0.29 0.00 38.00 3.35
2786 2886 0.805322 CGGTGAGACAGCATCTGAGC 60.805 60.000 0.29 0.00 38.00 4.26
2795 2895 1.937278 AGCATCTGAGCTGTTCATCG 58.063 50.000 0.00 0.00 44.66 3.84
2796 2896 1.479730 AGCATCTGAGCTGTTCATCGA 59.520 47.619 0.00 0.00 44.66 3.59
2797 2897 2.102757 AGCATCTGAGCTGTTCATCGAT 59.897 45.455 0.00 0.00 44.66 3.59
2798 2898 2.475864 GCATCTGAGCTGTTCATCGATC 59.524 50.000 0.00 0.00 34.68 3.69
2799 2899 3.799574 GCATCTGAGCTGTTCATCGATCT 60.800 47.826 0.00 0.00 34.68 2.75
2800 2900 4.370049 CATCTGAGCTGTTCATCGATCTT 58.630 43.478 0.00 0.00 34.68 2.40
2801 2901 4.462508 TCTGAGCTGTTCATCGATCTTT 57.537 40.909 0.00 0.00 34.68 2.52
2802 2902 4.825422 TCTGAGCTGTTCATCGATCTTTT 58.175 39.130 0.00 0.00 34.68 2.27
2803 2903 4.628766 TCTGAGCTGTTCATCGATCTTTTG 59.371 41.667 0.00 0.00 34.68 2.44
2804 2904 3.125829 TGAGCTGTTCATCGATCTTTTGC 59.874 43.478 0.00 0.00 0.00 3.68
2805 2905 2.421424 AGCTGTTCATCGATCTTTTGCC 59.579 45.455 0.00 0.00 0.00 4.52
2806 2906 2.162208 GCTGTTCATCGATCTTTTGCCA 59.838 45.455 0.00 0.00 0.00 4.92
2807 2907 3.366273 GCTGTTCATCGATCTTTTGCCAA 60.366 43.478 0.00 0.00 0.00 4.52
2808 2908 4.797471 CTGTTCATCGATCTTTTGCCAAA 58.203 39.130 0.00 0.00 0.00 3.28
2809 2909 4.545610 TGTTCATCGATCTTTTGCCAAAC 58.454 39.130 0.00 0.00 0.00 2.93
2810 2910 3.848272 TCATCGATCTTTTGCCAAACC 57.152 42.857 0.00 0.00 0.00 3.27
2811 2911 3.153130 TCATCGATCTTTTGCCAAACCA 58.847 40.909 0.00 0.00 0.00 3.67
2812 2912 3.571828 TCATCGATCTTTTGCCAAACCAA 59.428 39.130 0.00 0.00 0.00 3.67
2813 2913 4.038522 TCATCGATCTTTTGCCAAACCAAA 59.961 37.500 0.00 0.00 33.21 3.28
2814 2914 4.392921 TCGATCTTTTGCCAAACCAAAA 57.607 36.364 0.00 0.00 41.07 2.44
2815 2915 4.759782 TCGATCTTTTGCCAAACCAAAAA 58.240 34.783 0.00 0.00 42.26 1.94
2816 2916 4.568760 TCGATCTTTTGCCAAACCAAAAAC 59.431 37.500 0.00 0.00 42.26 2.43
2817 2917 4.331168 CGATCTTTTGCCAAACCAAAAACA 59.669 37.500 0.00 0.00 42.26 2.83
2818 2918 5.163814 CGATCTTTTGCCAAACCAAAAACAA 60.164 36.000 0.00 0.00 42.26 2.83
2819 2919 5.619625 TCTTTTGCCAAACCAAAAACAAG 57.380 34.783 0.00 0.00 42.26 3.16
2820 2920 5.308825 TCTTTTGCCAAACCAAAAACAAGA 58.691 33.333 0.00 0.00 42.26 3.02
2821 2921 5.411053 TCTTTTGCCAAACCAAAAACAAGAG 59.589 36.000 0.00 0.00 42.26 2.85
2822 2922 4.543590 TTGCCAAACCAAAAACAAGAGA 57.456 36.364 0.00 0.00 0.00 3.10
2823 2923 4.543590 TGCCAAACCAAAAACAAGAGAA 57.456 36.364 0.00 0.00 0.00 2.87
2824 2924 4.502962 TGCCAAACCAAAAACAAGAGAAG 58.497 39.130 0.00 0.00 0.00 2.85
2825 2925 4.221703 TGCCAAACCAAAAACAAGAGAAGA 59.778 37.500 0.00 0.00 0.00 2.87
2826 2926 5.175127 GCCAAACCAAAAACAAGAGAAGAA 58.825 37.500 0.00 0.00 0.00 2.52
2827 2927 5.063438 GCCAAACCAAAAACAAGAGAAGAAC 59.937 40.000 0.00 0.00 0.00 3.01
2828 2928 6.398095 CCAAACCAAAAACAAGAGAAGAACT 58.602 36.000 0.00 0.00 0.00 3.01
2829 2929 6.311200 CCAAACCAAAAACAAGAGAAGAACTG 59.689 38.462 0.00 0.00 0.00 3.16
2830 2930 6.590234 AACCAAAAACAAGAGAAGAACTGT 57.410 33.333 0.00 0.00 0.00 3.55
2831 2931 6.196079 ACCAAAAACAAGAGAAGAACTGTC 57.804 37.500 0.00 0.00 0.00 3.51
2832 2932 5.710099 ACCAAAAACAAGAGAAGAACTGTCA 59.290 36.000 0.00 0.00 0.00 3.58
2833 2933 6.127897 ACCAAAAACAAGAGAAGAACTGTCAG 60.128 38.462 0.00 0.00 0.00 3.51
2834 2934 5.491635 AAAACAAGAGAAGAACTGTCAGC 57.508 39.130 0.00 0.00 0.00 4.26
2835 2935 3.827008 ACAAGAGAAGAACTGTCAGCA 57.173 42.857 0.00 0.00 0.00 4.41
2836 2936 4.142609 ACAAGAGAAGAACTGTCAGCAA 57.857 40.909 0.00 0.00 0.00 3.91
2837 2937 4.712476 ACAAGAGAAGAACTGTCAGCAAT 58.288 39.130 0.00 0.00 0.00 3.56
2838 2938 4.754114 ACAAGAGAAGAACTGTCAGCAATC 59.246 41.667 0.00 0.00 0.00 2.67
2839 2939 4.613925 AGAGAAGAACTGTCAGCAATCA 57.386 40.909 0.00 0.00 0.00 2.57
2840 2940 4.567971 AGAGAAGAACTGTCAGCAATCAG 58.432 43.478 0.00 0.00 37.65 2.90
2841 2941 4.040217 AGAGAAGAACTGTCAGCAATCAGT 59.960 41.667 0.00 2.65 45.21 3.41
2842 2942 5.244851 AGAGAAGAACTGTCAGCAATCAGTA 59.755 40.000 0.00 0.00 42.95 2.74
2843 2943 5.477510 AGAAGAACTGTCAGCAATCAGTAG 58.522 41.667 0.00 0.00 42.95 2.57
2844 2944 4.199432 AGAACTGTCAGCAATCAGTAGG 57.801 45.455 0.00 0.00 42.95 3.18
2845 2945 3.580458 AGAACTGTCAGCAATCAGTAGGT 59.420 43.478 0.00 0.00 42.95 3.08
2846 2946 4.040952 AGAACTGTCAGCAATCAGTAGGTT 59.959 41.667 0.00 0.00 42.95 3.50
2847 2947 3.668447 ACTGTCAGCAATCAGTAGGTTG 58.332 45.455 0.00 0.00 42.13 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.256812 CCCGGCAAAGTCAAAAGGAT 58.743 50.000 0.00 0.00 0.00 3.24
13 14 1.460273 GCCCGGCAAAGTCAAAAGGA 61.460 55.000 3.91 0.00 0.00 3.36
14 15 1.006220 GCCCGGCAAAGTCAAAAGG 60.006 57.895 3.91 0.00 0.00 3.11
15 16 1.371635 CGCCCGGCAAAGTCAAAAG 60.372 57.895 10.77 0.00 0.00 2.27
142 143 0.101759 TATTCTACACGCACGGGAGC 59.898 55.000 0.00 0.00 0.00 4.70
143 144 1.404391 AGTATTCTACACGCACGGGAG 59.596 52.381 0.00 0.00 0.00 4.30
145 146 2.615447 TCTAGTATTCTACACGCACGGG 59.385 50.000 0.00 0.00 0.00 5.28
146 147 3.615614 GTCTAGTATTCTACACGCACGG 58.384 50.000 0.00 0.00 0.00 4.94
162 193 3.481628 CGGATCGTAGTTATCGCGTCTAG 60.482 52.174 5.77 0.00 0.00 2.43
163 194 2.409715 CGGATCGTAGTTATCGCGTCTA 59.590 50.000 5.77 2.60 0.00 2.59
164 195 1.194098 CGGATCGTAGTTATCGCGTCT 59.806 52.381 5.77 3.61 0.00 4.18
174 205 2.531927 TTCGTTGCGCGGATCGTAGT 62.532 55.000 26.32 0.00 41.72 2.73
182 213 3.083600 GATCTGGTTCGTTGCGCGG 62.084 63.158 8.83 0.00 41.72 6.46
188 219 0.888619 TCTCGCAGATCTGGTTCGTT 59.111 50.000 23.89 0.00 33.89 3.85
219 250 2.745492 GCACCTGCCTGCAGAGTC 60.745 66.667 20.29 4.40 46.30 3.36
220 251 3.563224 TGCACCTGCCTGCAGAGT 61.563 61.111 20.29 12.98 46.30 3.24
224 255 4.648626 GGAGTGCACCTGCCTGCA 62.649 66.667 14.63 0.00 45.06 4.41
225 256 4.648626 TGGAGTGCACCTGCCTGC 62.649 66.667 14.63 0.00 41.18 4.85
226 257 2.670934 GTGGAGTGCACCTGCCTG 60.671 66.667 14.63 0.00 41.18 4.85
227 258 3.170672 TGTGGAGTGCACCTGCCT 61.171 61.111 14.63 0.00 41.18 4.75
228 259 2.980233 GTGTGGAGTGCACCTGCC 60.980 66.667 14.63 13.44 41.18 4.85
333 371 4.171103 AGTTACGATGGGCCCGCC 62.171 66.667 19.37 10.48 0.00 6.13
342 380 0.249398 GTGCTGGGGTCAGTTACGAT 59.751 55.000 0.00 0.00 42.78 3.73
343 381 1.669440 GTGCTGGGGTCAGTTACGA 59.331 57.895 0.00 0.00 42.78 3.43
356 394 3.197790 CGGGAATGAGCCGTGCTG 61.198 66.667 2.98 0.00 39.88 4.41
409 447 4.292178 GCAGAGGATCCCGCTCGG 62.292 72.222 8.55 1.43 29.38 4.63
411 449 4.292178 CCGCAGAGGATCCCGCTC 62.292 72.222 8.55 0.00 45.00 5.03
469 507 5.020132 AGTACTAGCACAAATCTCCACTCT 58.980 41.667 0.00 0.00 0.00 3.24
472 510 4.160626 AGGAGTACTAGCACAAATCTCCAC 59.839 45.833 0.00 0.00 41.40 4.02
494 532 4.963276 TGCAGAATAAAAATGACCGGAG 57.037 40.909 9.46 0.00 0.00 4.63
496 534 8.783093 TCTAATATGCAGAATAAAAATGACCGG 58.217 33.333 0.00 0.00 0.00 5.28
539 577 9.752961 CATGGCAGATGTTGATAATTTTTCATA 57.247 29.630 0.00 0.00 0.00 2.15
540 578 7.225931 GCATGGCAGATGTTGATAATTTTTCAT 59.774 33.333 0.00 0.00 0.00 2.57
541 579 6.535865 GCATGGCAGATGTTGATAATTTTTCA 59.464 34.615 0.00 0.00 0.00 2.69
542 580 6.759827 AGCATGGCAGATGTTGATAATTTTTC 59.240 34.615 0.00 0.00 0.00 2.29
543 581 6.646267 AGCATGGCAGATGTTGATAATTTTT 58.354 32.000 0.00 0.00 0.00 1.94
544 582 6.229936 AGCATGGCAGATGTTGATAATTTT 57.770 33.333 0.00 0.00 0.00 1.82
545 583 5.864418 AGCATGGCAGATGTTGATAATTT 57.136 34.783 0.00 0.00 0.00 1.82
546 584 6.964807 TTAGCATGGCAGATGTTGATAATT 57.035 33.333 0.00 0.00 0.00 1.40
547 585 6.548622 ACTTTAGCATGGCAGATGTTGATAAT 59.451 34.615 0.00 0.00 0.00 1.28
548 586 5.887598 ACTTTAGCATGGCAGATGTTGATAA 59.112 36.000 0.00 0.00 0.00 1.75
549 587 5.439721 ACTTTAGCATGGCAGATGTTGATA 58.560 37.500 0.00 0.00 0.00 2.15
550 588 4.275810 ACTTTAGCATGGCAGATGTTGAT 58.724 39.130 0.00 0.00 0.00 2.57
551 589 3.689347 ACTTTAGCATGGCAGATGTTGA 58.311 40.909 0.00 0.00 0.00 3.18
552 590 4.445452 AACTTTAGCATGGCAGATGTTG 57.555 40.909 0.00 0.00 0.00 3.33
553 591 6.828273 TGTATAACTTTAGCATGGCAGATGTT 59.172 34.615 0.00 0.00 0.00 2.71
554 592 6.356556 TGTATAACTTTAGCATGGCAGATGT 58.643 36.000 0.00 0.00 0.00 3.06
555 593 6.866010 TGTATAACTTTAGCATGGCAGATG 57.134 37.500 0.00 0.00 0.00 2.90
556 594 9.003658 GTATTGTATAACTTTAGCATGGCAGAT 57.996 33.333 0.00 0.00 0.00 2.90
557 595 8.210946 AGTATTGTATAACTTTAGCATGGCAGA 58.789 33.333 0.00 0.00 0.00 4.26
558 596 8.383318 AGTATTGTATAACTTTAGCATGGCAG 57.617 34.615 0.00 0.00 0.00 4.85
580 618 9.990360 TGTGTCATGACTTAAAGTTTCATAGTA 57.010 29.630 25.55 0.00 0.00 1.82
581 619 8.902540 TGTGTCATGACTTAAAGTTTCATAGT 57.097 30.769 25.55 0.00 0.00 2.12
582 620 9.979270 GATGTGTCATGACTTAAAGTTTCATAG 57.021 33.333 25.55 0.00 0.00 2.23
583 621 9.725019 AGATGTGTCATGACTTAAAGTTTCATA 57.275 29.630 25.55 1.27 0.00 2.15
584 622 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
585 623 8.450578 AAGATGTGTCATGACTTAAAGTTTCA 57.549 30.769 25.55 11.05 0.00 2.69
586 624 9.736023 AAAAGATGTGTCATGACTTAAAGTTTC 57.264 29.630 25.55 11.27 0.00 2.78
652 690 9.063615 AGTCTCGTAAAGTTTGACCAATTTTAT 57.936 29.630 0.00 0.00 0.00 1.40
653 691 8.441312 AGTCTCGTAAAGTTTGACCAATTTTA 57.559 30.769 0.00 0.00 0.00 1.52
654 692 7.329588 AGTCTCGTAAAGTTTGACCAATTTT 57.670 32.000 0.00 0.00 0.00 1.82
655 693 6.937436 AGTCTCGTAAAGTTTGACCAATTT 57.063 33.333 0.00 0.00 0.00 1.82
656 694 6.540914 TCAAGTCTCGTAAAGTTTGACCAATT 59.459 34.615 0.00 0.00 30.31 2.32
657 695 6.018180 GTCAAGTCTCGTAAAGTTTGACCAAT 60.018 38.462 0.00 0.00 40.61 3.16
658 696 5.292589 GTCAAGTCTCGTAAAGTTTGACCAA 59.707 40.000 0.00 0.00 40.61 3.67
659 697 4.807304 GTCAAGTCTCGTAAAGTTTGACCA 59.193 41.667 0.00 0.00 40.61 4.02
660 698 5.048507 AGTCAAGTCTCGTAAAGTTTGACC 58.951 41.667 10.51 0.00 43.62 4.02
661 699 6.255020 TGAAGTCAAGTCTCGTAAAGTTTGAC 59.745 38.462 0.00 6.98 43.31 3.18
662 700 6.334989 TGAAGTCAAGTCTCGTAAAGTTTGA 58.665 36.000 0.00 0.00 31.73 2.69
663 701 6.255887 ACTGAAGTCAAGTCTCGTAAAGTTTG 59.744 38.462 0.00 0.00 0.00 2.93
664 702 6.338937 ACTGAAGTCAAGTCTCGTAAAGTTT 58.661 36.000 0.00 0.00 0.00 2.66
665 703 5.903810 ACTGAAGTCAAGTCTCGTAAAGTT 58.096 37.500 0.00 0.00 0.00 2.66
666 704 5.517322 ACTGAAGTCAAGTCTCGTAAAGT 57.483 39.130 0.00 0.00 0.00 2.66
680 718 7.700322 TCGCATATAAGATTTGACTGAAGTC 57.300 36.000 3.41 3.41 44.97 3.01
681 719 7.766278 AGTTCGCATATAAGATTTGACTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
682 720 8.136057 AGTTCGCATATAAGATTTGACTGAAG 57.864 34.615 0.00 0.00 0.00 3.02
683 721 9.594478 TTAGTTCGCATATAAGATTTGACTGAA 57.406 29.630 0.00 0.00 0.00 3.02
684 722 9.594478 TTTAGTTCGCATATAAGATTTGACTGA 57.406 29.630 0.00 0.00 0.00 3.41
689 727 8.958043 GCCTTTTTAGTTCGCATATAAGATTTG 58.042 33.333 0.00 0.00 0.00 2.32
690 728 8.135529 GGCCTTTTTAGTTCGCATATAAGATTT 58.864 33.333 0.00 0.00 0.00 2.17
691 729 7.255486 GGGCCTTTTTAGTTCGCATATAAGATT 60.255 37.037 0.84 0.00 0.00 2.40
692 730 6.206829 GGGCCTTTTTAGTTCGCATATAAGAT 59.793 38.462 0.84 0.00 0.00 2.40
693 731 5.529800 GGGCCTTTTTAGTTCGCATATAAGA 59.470 40.000 0.84 0.00 0.00 2.10
694 732 5.560183 CGGGCCTTTTTAGTTCGCATATAAG 60.560 44.000 0.84 0.00 0.00 1.73
695 733 4.273969 CGGGCCTTTTTAGTTCGCATATAA 59.726 41.667 0.84 0.00 0.00 0.98
696 734 3.810941 CGGGCCTTTTTAGTTCGCATATA 59.189 43.478 0.84 0.00 0.00 0.86
697 735 2.616842 CGGGCCTTTTTAGTTCGCATAT 59.383 45.455 0.84 0.00 0.00 1.78
698 736 2.011222 CGGGCCTTTTTAGTTCGCATA 58.989 47.619 0.84 0.00 0.00 3.14
699 737 0.808755 CGGGCCTTTTTAGTTCGCAT 59.191 50.000 0.84 0.00 0.00 4.73
700 738 1.238625 CCGGGCCTTTTTAGTTCGCA 61.239 55.000 0.84 0.00 0.00 5.10
701 739 0.956902 TCCGGGCCTTTTTAGTTCGC 60.957 55.000 0.84 0.00 0.00 4.70
702 740 1.084289 CTCCGGGCCTTTTTAGTTCG 58.916 55.000 0.84 0.00 0.00 3.95
703 741 1.003928 TCCTCCGGGCCTTTTTAGTTC 59.996 52.381 0.84 0.00 0.00 3.01
704 742 1.069775 TCCTCCGGGCCTTTTTAGTT 58.930 50.000 0.84 0.00 0.00 2.24
705 743 1.004394 CTTCCTCCGGGCCTTTTTAGT 59.996 52.381 0.84 0.00 0.00 2.24
706 744 1.682087 CCTTCCTCCGGGCCTTTTTAG 60.682 57.143 0.84 0.00 0.00 1.85
707 745 0.330267 CCTTCCTCCGGGCCTTTTTA 59.670 55.000 0.84 0.00 0.00 1.52
708 746 1.076727 CCTTCCTCCGGGCCTTTTT 59.923 57.895 0.84 0.00 0.00 1.94
709 747 2.763902 CCTTCCTCCGGGCCTTTT 59.236 61.111 0.84 0.00 0.00 2.27
710 748 3.339093 CCCTTCCTCCGGGCCTTT 61.339 66.667 0.84 0.00 34.32 3.11
711 749 4.348495 TCCCTTCCTCCGGGCCTT 62.348 66.667 0.84 0.00 41.69 4.35
712 750 4.806339 CTCCCTTCCTCCGGGCCT 62.806 72.222 0.84 0.00 41.69 5.19
713 751 3.691297 TACTCCCTTCCTCCGGGCC 62.691 68.421 0.00 0.00 41.69 5.80
714 752 2.042230 TACTCCCTTCCTCCGGGC 60.042 66.667 0.00 0.00 41.69 6.13
715 753 0.616679 TTGTACTCCCTTCCTCCGGG 60.617 60.000 0.00 0.00 43.38 5.73
716 754 1.066358 GTTTGTACTCCCTTCCTCCGG 60.066 57.143 0.00 0.00 0.00 5.14
717 755 1.621814 TGTTTGTACTCCCTTCCTCCG 59.378 52.381 0.00 0.00 0.00 4.63
718 756 3.782656 TTGTTTGTACTCCCTTCCTCC 57.217 47.619 0.00 0.00 0.00 4.30
719 757 4.392138 CGATTTGTTTGTACTCCCTTCCTC 59.608 45.833 0.00 0.00 0.00 3.71
720 758 4.324267 CGATTTGTTTGTACTCCCTTCCT 58.676 43.478 0.00 0.00 0.00 3.36
721 759 3.439129 CCGATTTGTTTGTACTCCCTTCC 59.561 47.826 0.00 0.00 0.00 3.46
722 760 4.320870 TCCGATTTGTTTGTACTCCCTTC 58.679 43.478 0.00 0.00 0.00 3.46
723 761 4.360951 TCCGATTTGTTTGTACTCCCTT 57.639 40.909 0.00 0.00 0.00 3.95
724 762 4.324267 CTTCCGATTTGTTTGTACTCCCT 58.676 43.478 0.00 0.00 0.00 4.20
725 763 3.119955 GCTTCCGATTTGTTTGTACTCCC 60.120 47.826 0.00 0.00 0.00 4.30
726 764 3.751698 AGCTTCCGATTTGTTTGTACTCC 59.248 43.478 0.00 0.00 0.00 3.85
727 765 4.451096 TCAGCTTCCGATTTGTTTGTACTC 59.549 41.667 0.00 0.00 0.00 2.59
728 766 4.385825 TCAGCTTCCGATTTGTTTGTACT 58.614 39.130 0.00 0.00 0.00 2.73
729 767 4.742438 TCAGCTTCCGATTTGTTTGTAC 57.258 40.909 0.00 0.00 0.00 2.90
730 768 5.705441 AGAATCAGCTTCCGATTTGTTTGTA 59.295 36.000 0.00 0.00 33.26 2.41
731 769 4.520492 AGAATCAGCTTCCGATTTGTTTGT 59.480 37.500 0.00 0.00 33.26 2.83
732 770 5.051891 AGAATCAGCTTCCGATTTGTTTG 57.948 39.130 0.00 0.00 33.26 2.93
750 788 4.454847 CACACATCTGACTGAGCAAAGAAT 59.545 41.667 0.00 0.00 0.00 2.40
770 808 3.761752 TCATTCAGGACGTGTAGATCACA 59.238 43.478 0.00 0.00 46.44 3.58
772 810 4.737649 GCATCATTCAGGACGTGTAGATCA 60.738 45.833 0.00 0.00 0.00 2.92
773 811 3.738282 GCATCATTCAGGACGTGTAGATC 59.262 47.826 0.00 0.00 0.00 2.75
774 812 3.722147 GCATCATTCAGGACGTGTAGAT 58.278 45.455 0.00 0.00 0.00 1.98
796 834 6.434018 AGTCTACTAGAACCGTATGACAAC 57.566 41.667 0.00 0.00 0.00 3.32
799 837 7.601886 TGCTATAGTCTACTAGAACCGTATGAC 59.398 40.741 0.00 0.00 0.00 3.06
809 847 7.499563 CACCTCAACTTGCTATAGTCTACTAGA 59.500 40.741 0.00 0.00 0.00 2.43
810 848 7.644490 CACCTCAACTTGCTATAGTCTACTAG 58.356 42.308 0.84 0.00 0.00 2.57
812 850 5.163499 GCACCTCAACTTGCTATAGTCTACT 60.163 44.000 0.84 0.00 35.74 2.57
813 851 5.044558 GCACCTCAACTTGCTATAGTCTAC 58.955 45.833 0.84 0.00 35.74 2.59
817 855 3.981071 TGCACCTCAACTTGCTATAGT 57.019 42.857 0.84 0.00 39.62 2.12
844 882 3.202706 GGTTGCCGCGGGATCTTC 61.203 66.667 29.38 14.50 0.00 2.87
888 926 0.108992 AGCTCGCGGTTATTCACGAA 60.109 50.000 6.13 0.00 33.61 3.85
903 941 0.101579 GGAGAGAAGGCACGTAGCTC 59.898 60.000 9.31 2.95 44.79 4.09
930 968 1.922880 GCTTAACGGCGTGTGGTTTTC 60.923 52.381 15.70 0.00 0.00 2.29
1027 1086 2.029288 CTCGCGCTTCTTGGCAAGA 61.029 57.895 25.38 25.38 35.26 3.02
1064 1123 0.463654 ATGACTCGCTCGCTCTCTCT 60.464 55.000 0.00 0.00 0.00 3.10
1066 1125 0.746204 TGATGACTCGCTCGCTCTCT 60.746 55.000 0.00 0.00 0.00 3.10
1068 1127 1.726865 CTGATGACTCGCTCGCTCT 59.273 57.895 0.00 0.00 0.00 4.09
1070 1129 2.103934 GCTGATGACTCGCTCGCT 59.896 61.111 0.00 0.00 0.00 4.93
1071 1130 3.318555 CGCTGATGACTCGCTCGC 61.319 66.667 0.00 0.00 0.00 5.03
1072 1131 1.653835 CTCGCTGATGACTCGCTCG 60.654 63.158 0.00 0.00 0.00 5.03
1073 1132 0.316937 CTCTCGCTGATGACTCGCTC 60.317 60.000 0.00 0.00 0.00 5.03
1074 1133 1.726865 CTCTCGCTGATGACTCGCT 59.273 57.895 0.00 0.00 0.00 4.93
1075 1134 1.943693 GCTCTCGCTGATGACTCGC 60.944 63.158 0.00 0.00 0.00 5.03
1076 1135 0.179153 TTGCTCTCGCTGATGACTCG 60.179 55.000 0.00 0.00 36.97 4.18
1077 1136 1.276415 GTTGCTCTCGCTGATGACTC 58.724 55.000 0.00 0.00 36.97 3.36
1078 1137 0.108424 GGTTGCTCTCGCTGATGACT 60.108 55.000 0.00 0.00 36.97 3.41
1079 1138 1.416813 CGGTTGCTCTCGCTGATGAC 61.417 60.000 0.00 0.00 36.97 3.06
1080 1139 1.153765 CGGTTGCTCTCGCTGATGA 60.154 57.895 0.00 0.00 36.97 2.92
1081 1140 3.392431 CGGTTGCTCTCGCTGATG 58.608 61.111 0.00 0.00 36.97 3.07
1103 1162 0.757188 TCTCCGCCTTCATCTCCCTC 60.757 60.000 0.00 0.00 0.00 4.30
1104 1163 0.325671 TTCTCCGCCTTCATCTCCCT 60.326 55.000 0.00 0.00 0.00 4.20
1105 1164 0.105778 CTTCTCCGCCTTCATCTCCC 59.894 60.000 0.00 0.00 0.00 4.30
1106 1165 0.105778 CCTTCTCCGCCTTCATCTCC 59.894 60.000 0.00 0.00 0.00 3.71
1822 1882 8.385111 TCGGTTTTTAATCTAGCTTAAACATCG 58.615 33.333 18.03 18.03 36.73 3.84
1844 1904 0.036010 CCAGATCACAGGCTTTCGGT 60.036 55.000 0.00 0.00 0.00 4.69
1845 1905 0.745845 CCCAGATCACAGGCTTTCGG 60.746 60.000 0.00 0.00 0.00 4.30
1846 1906 1.372087 GCCCAGATCACAGGCTTTCG 61.372 60.000 12.11 0.00 43.62 3.46
1907 1967 1.028905 CCGAGGGACAACAAAAGCAA 58.971 50.000 0.00 0.00 0.00 3.91
1924 1984 2.792374 GTGTACAGACACGACACCG 58.208 57.895 0.00 0.00 46.23 4.94
1945 2005 0.458025 GTACTACACGGTGGAGCAGC 60.458 60.000 20.21 6.94 29.04 5.25
1969 2030 4.642885 CGGGGAGCTTAAAATGTCCAATTA 59.357 41.667 0.00 0.00 0.00 1.40
2009 2070 3.645884 CACAAATGGTGCTGGAAAGAAG 58.354 45.455 0.00 0.00 41.36 2.85
2041 2102 1.885233 TCAAGGATGCAATGCAACGAA 59.115 42.857 13.45 0.00 43.62 3.85
2101 2162 2.122413 TGTCTCACAGGCCTGGGT 60.122 61.111 33.79 12.95 35.03 4.51
2136 2197 1.065551 CTGATCGATGTCGTGCTGGTA 59.934 52.381 0.54 0.00 40.80 3.25
2137 2198 0.179127 CTGATCGATGTCGTGCTGGT 60.179 55.000 0.54 0.00 40.80 4.00
2138 2199 1.485838 GCTGATCGATGTCGTGCTGG 61.486 60.000 0.54 0.00 40.80 4.85
2167 2228 2.125673 ATAGTGGTGCCGTCGTGC 60.126 61.111 0.00 0.00 0.00 5.34
2168 2229 0.179111 ATGATAGTGGTGCCGTCGTG 60.179 55.000 0.00 0.00 0.00 4.35
2169 2230 0.535335 AATGATAGTGGTGCCGTCGT 59.465 50.000 0.00 0.00 0.00 4.34
2194 2255 2.839474 GTGCTTTTCACCTTTCGATCG 58.161 47.619 9.36 9.36 39.79 3.69
2226 2288 7.114882 CTCTAGATAAATGGAGCAATGAACG 57.885 40.000 0.00 0.00 0.00 3.95
2256 2320 5.348986 ACTAATCGCCTAGTACACAACATG 58.651 41.667 0.00 0.00 30.13 3.21
2272 2349 3.666374 GCTATCCCGTCACGTACTAATCG 60.666 52.174 0.00 0.00 0.00 3.34
2275 2358 2.615447 CTGCTATCCCGTCACGTACTAA 59.385 50.000 0.00 0.00 0.00 2.24
2309 2392 0.314302 GCACGACTAGACCAGTGTGT 59.686 55.000 0.00 0.00 37.72 3.72
2379 2462 3.125573 TCGGCGAGACGAGGACAG 61.126 66.667 4.99 0.00 38.06 3.51
2451 2534 1.811679 GCAGTACTGAGCGAAGGGC 60.812 63.158 27.08 3.55 44.05 5.19
2462 2545 1.187087 GCACTAGACCAGGCAGTACT 58.813 55.000 0.00 0.00 0.00 2.73
2463 2546 0.895530 TGCACTAGACCAGGCAGTAC 59.104 55.000 0.00 0.00 0.00 2.73
2468 2551 1.078848 CCAGTGCACTAGACCAGGC 60.079 63.158 21.20 0.00 0.00 4.85
2610 2710 3.854881 CGCAAATAGTGAGCTCGAAATC 58.145 45.455 9.64 0.00 0.00 2.17
2625 2725 3.472652 TGATTACCTAATCGGCGCAAAT 58.527 40.909 10.83 0.00 43.80 2.32
2631 2731 2.488153 GGGCAATGATTACCTAATCGGC 59.512 50.000 0.00 4.78 43.80 5.54
2637 2737 2.509548 ACTGCTGGGCAATGATTACCTA 59.490 45.455 0.00 0.00 38.41 3.08
2654 2754 2.111756 CACGAACAAAGCTTGAACTGC 58.888 47.619 0.00 0.00 0.00 4.40
2658 2758 3.882888 AGATTCCACGAACAAAGCTTGAA 59.117 39.130 0.00 0.00 0.00 2.69
2710 2810 9.706529 TCTACAGCATCTATCCTGTATAATGAT 57.293 33.333 1.49 0.00 41.98 2.45
2711 2811 9.183368 CTCTACAGCATCTATCCTGTATAATGA 57.817 37.037 1.49 0.00 41.98 2.57
2712 2812 9.183368 TCTCTACAGCATCTATCCTGTATAATG 57.817 37.037 1.49 0.00 41.98 1.90
2713 2813 9.934784 ATCTCTACAGCATCTATCCTGTATAAT 57.065 33.333 1.49 0.00 41.98 1.28
2716 2816 9.760926 TTTATCTCTACAGCATCTATCCTGTAT 57.239 33.333 1.49 0.00 41.98 2.29
2717 2817 9.588096 TTTTATCTCTACAGCATCTATCCTGTA 57.412 33.333 0.00 0.00 42.02 2.74
2718 2818 8.484214 TTTTATCTCTACAGCATCTATCCTGT 57.516 34.615 0.00 0.00 44.02 4.00
2719 2819 9.368674 CATTTTATCTCTACAGCATCTATCCTG 57.631 37.037 0.00 0.00 35.26 3.86
2720 2820 8.040132 GCATTTTATCTCTACAGCATCTATCCT 58.960 37.037 0.00 0.00 0.00 3.24
2721 2821 7.821359 TGCATTTTATCTCTACAGCATCTATCC 59.179 37.037 0.00 0.00 0.00 2.59
2722 2822 8.768957 TGCATTTTATCTCTACAGCATCTATC 57.231 34.615 0.00 0.00 0.00 2.08
2723 2823 7.823310 CCTGCATTTTATCTCTACAGCATCTAT 59.177 37.037 0.00 0.00 0.00 1.98
2724 2824 7.157347 CCTGCATTTTATCTCTACAGCATCTA 58.843 38.462 0.00 0.00 0.00 1.98
2725 2825 5.996513 CCTGCATTTTATCTCTACAGCATCT 59.003 40.000 0.00 0.00 0.00 2.90
2726 2826 5.180868 CCCTGCATTTTATCTCTACAGCATC 59.819 44.000 0.00 0.00 0.00 3.91
2727 2827 5.068636 CCCTGCATTTTATCTCTACAGCAT 58.931 41.667 0.00 0.00 0.00 3.79
2728 2828 4.164030 TCCCTGCATTTTATCTCTACAGCA 59.836 41.667 0.00 0.00 0.00 4.41
2729 2829 4.708177 TCCCTGCATTTTATCTCTACAGC 58.292 43.478 0.00 0.00 0.00 4.40
2730 2830 5.070981 TCCTCCCTGCATTTTATCTCTACAG 59.929 44.000 0.00 0.00 0.00 2.74
2731 2831 4.968719 TCCTCCCTGCATTTTATCTCTACA 59.031 41.667 0.00 0.00 0.00 2.74
2732 2832 5.305644 TCTCCTCCCTGCATTTTATCTCTAC 59.694 44.000 0.00 0.00 0.00 2.59
2733 2833 5.467738 TCTCCTCCCTGCATTTTATCTCTA 58.532 41.667 0.00 0.00 0.00 2.43
2734 2834 4.302067 TCTCCTCCCTGCATTTTATCTCT 58.698 43.478 0.00 0.00 0.00 3.10
2735 2835 4.696479 TCTCCTCCCTGCATTTTATCTC 57.304 45.455 0.00 0.00 0.00 2.75
2736 2836 5.044550 ACTTTCTCCTCCCTGCATTTTATCT 60.045 40.000 0.00 0.00 0.00 1.98
2737 2837 5.196695 ACTTTCTCCTCCCTGCATTTTATC 58.803 41.667 0.00 0.00 0.00 1.75
2738 2838 5.198602 ACTTTCTCCTCCCTGCATTTTAT 57.801 39.130 0.00 0.00 0.00 1.40
2739 2839 4.657814 ACTTTCTCCTCCCTGCATTTTA 57.342 40.909 0.00 0.00 0.00 1.52
2740 2840 3.532641 ACTTTCTCCTCCCTGCATTTT 57.467 42.857 0.00 0.00 0.00 1.82
2741 2841 3.160269 CAACTTTCTCCTCCCTGCATTT 58.840 45.455 0.00 0.00 0.00 2.32
2742 2842 2.556114 CCAACTTTCTCCTCCCTGCATT 60.556 50.000 0.00 0.00 0.00 3.56
2743 2843 1.005215 CCAACTTTCTCCTCCCTGCAT 59.995 52.381 0.00 0.00 0.00 3.96
2744 2844 0.401738 CCAACTTTCTCCTCCCTGCA 59.598 55.000 0.00 0.00 0.00 4.41
2745 2845 0.402121 ACCAACTTTCTCCTCCCTGC 59.598 55.000 0.00 0.00 0.00 4.85
2746 2846 2.959465 AACCAACTTTCTCCTCCCTG 57.041 50.000 0.00 0.00 0.00 4.45
2747 2847 2.224548 CGAAACCAACTTTCTCCTCCCT 60.225 50.000 0.00 0.00 36.80 4.20
2748 2848 2.152016 CGAAACCAACTTTCTCCTCCC 58.848 52.381 0.00 0.00 36.80 4.30
2749 2849 2.152016 CCGAAACCAACTTTCTCCTCC 58.848 52.381 0.00 0.00 36.80 4.30
2750 2850 2.548480 CACCGAAACCAACTTTCTCCTC 59.452 50.000 0.00 0.00 36.80 3.71
2751 2851 2.171870 TCACCGAAACCAACTTTCTCCT 59.828 45.455 0.00 0.00 36.80 3.69
2752 2852 2.548480 CTCACCGAAACCAACTTTCTCC 59.452 50.000 0.00 0.00 36.80 3.71
2753 2853 3.247886 GTCTCACCGAAACCAACTTTCTC 59.752 47.826 0.00 0.00 36.80 2.87
2754 2854 3.203716 GTCTCACCGAAACCAACTTTCT 58.796 45.455 0.00 0.00 36.80 2.52
2755 2855 2.940410 TGTCTCACCGAAACCAACTTTC 59.060 45.455 0.00 0.00 35.74 2.62
2756 2856 2.943033 CTGTCTCACCGAAACCAACTTT 59.057 45.455 0.00 0.00 0.00 2.66
2757 2857 2.561569 CTGTCTCACCGAAACCAACTT 58.438 47.619 0.00 0.00 0.00 2.66
2758 2858 1.810412 GCTGTCTCACCGAAACCAACT 60.810 52.381 0.00 0.00 0.00 3.16
2759 2859 0.586802 GCTGTCTCACCGAAACCAAC 59.413 55.000 0.00 0.00 0.00 3.77
2760 2860 0.179234 TGCTGTCTCACCGAAACCAA 59.821 50.000 0.00 0.00 0.00 3.67
2761 2861 0.396435 ATGCTGTCTCACCGAAACCA 59.604 50.000 0.00 0.00 0.00 3.67
2762 2862 1.079503 GATGCTGTCTCACCGAAACC 58.920 55.000 0.00 0.00 0.00 3.27
2763 2863 1.728971 CAGATGCTGTCTCACCGAAAC 59.271 52.381 0.00 0.00 34.00 2.78
2764 2864 1.618343 TCAGATGCTGTCTCACCGAAA 59.382 47.619 0.00 0.00 34.00 3.46
2765 2865 1.203287 CTCAGATGCTGTCTCACCGAA 59.797 52.381 0.00 0.00 34.00 4.30
2766 2866 0.813821 CTCAGATGCTGTCTCACCGA 59.186 55.000 0.00 0.00 34.00 4.69
2767 2867 0.805322 GCTCAGATGCTGTCTCACCG 60.805 60.000 0.00 0.00 34.00 4.94
2768 2868 0.536260 AGCTCAGATGCTGTCTCACC 59.464 55.000 0.00 0.00 42.33 4.02
2776 2876 1.479730 TCGATGAACAGCTCAGATGCT 59.520 47.619 0.00 0.00 45.18 3.79
2777 2877 1.931906 TCGATGAACAGCTCAGATGC 58.068 50.000 0.00 0.00 37.52 3.91
2778 2878 3.979948 AGATCGATGAACAGCTCAGATG 58.020 45.455 0.54 0.00 37.52 2.90
2779 2879 4.669206 AAGATCGATGAACAGCTCAGAT 57.331 40.909 0.54 0.00 37.52 2.90
2780 2880 4.462508 AAAGATCGATGAACAGCTCAGA 57.537 40.909 0.54 0.00 37.52 3.27
2781 2881 4.727162 GCAAAAGATCGATGAACAGCTCAG 60.727 45.833 0.54 0.00 37.52 3.35
2782 2882 3.125829 GCAAAAGATCGATGAACAGCTCA 59.874 43.478 0.54 0.00 38.81 4.26
2783 2883 3.486542 GGCAAAAGATCGATGAACAGCTC 60.487 47.826 0.54 0.00 0.00 4.09
2784 2884 2.421424 GGCAAAAGATCGATGAACAGCT 59.579 45.455 0.54 0.00 0.00 4.24
2785 2885 2.162208 TGGCAAAAGATCGATGAACAGC 59.838 45.455 0.54 1.08 0.00 4.40
2786 2886 4.424061 TTGGCAAAAGATCGATGAACAG 57.576 40.909 0.54 0.00 0.00 3.16
2787 2887 4.545610 GTTTGGCAAAAGATCGATGAACA 58.454 39.130 15.29 0.00 0.00 3.18
2788 2888 3.920412 GGTTTGGCAAAAGATCGATGAAC 59.080 43.478 15.29 0.00 0.00 3.18
2789 2889 3.571828 TGGTTTGGCAAAAGATCGATGAA 59.428 39.130 15.29 0.00 0.00 2.57
2790 2890 3.153130 TGGTTTGGCAAAAGATCGATGA 58.847 40.909 15.29 0.00 0.00 2.92
2791 2891 3.574284 TGGTTTGGCAAAAGATCGATG 57.426 42.857 15.29 0.00 0.00 3.84
2792 2892 4.599047 TTTGGTTTGGCAAAAGATCGAT 57.401 36.364 15.29 0.00 0.00 3.59
2793 2893 4.392921 TTTTGGTTTGGCAAAAGATCGA 57.607 36.364 15.29 2.36 0.00 3.59
2794 2894 4.331168 TGTTTTTGGTTTGGCAAAAGATCG 59.669 37.500 15.29 0.00 32.76 3.69
2795 2895 5.809719 TGTTTTTGGTTTGGCAAAAGATC 57.190 34.783 15.29 1.76 32.76 2.75
2796 2896 5.942826 TCTTGTTTTTGGTTTGGCAAAAGAT 59.057 32.000 15.29 0.00 32.76 2.40
2797 2897 5.308825 TCTTGTTTTTGGTTTGGCAAAAGA 58.691 33.333 15.29 7.63 32.76 2.52
2798 2898 5.411053 TCTCTTGTTTTTGGTTTGGCAAAAG 59.589 36.000 15.29 5.24 32.76 2.27
2799 2899 5.308825 TCTCTTGTTTTTGGTTTGGCAAAA 58.691 33.333 15.29 0.00 0.00 2.44
2800 2900 4.899502 TCTCTTGTTTTTGGTTTGGCAAA 58.100 34.783 8.93 8.93 0.00 3.68
2801 2901 4.543590 TCTCTTGTTTTTGGTTTGGCAA 57.456 36.364 0.00 0.00 0.00 4.52
2802 2902 4.221703 TCTTCTCTTGTTTTTGGTTTGGCA 59.778 37.500 0.00 0.00 0.00 4.92
2803 2903 4.754322 TCTTCTCTTGTTTTTGGTTTGGC 58.246 39.130 0.00 0.00 0.00 4.52
2804 2904 6.311200 CAGTTCTTCTCTTGTTTTTGGTTTGG 59.689 38.462 0.00 0.00 0.00 3.28
2805 2905 6.868339 ACAGTTCTTCTCTTGTTTTTGGTTTG 59.132 34.615 0.00 0.00 0.00 2.93
2806 2906 6.993079 ACAGTTCTTCTCTTGTTTTTGGTTT 58.007 32.000 0.00 0.00 0.00 3.27
2807 2907 6.208599 TGACAGTTCTTCTCTTGTTTTTGGTT 59.791 34.615 0.00 0.00 0.00 3.67
2808 2908 5.710099 TGACAGTTCTTCTCTTGTTTTTGGT 59.290 36.000 0.00 0.00 0.00 3.67
2809 2909 6.194796 TGACAGTTCTTCTCTTGTTTTTGG 57.805 37.500 0.00 0.00 0.00 3.28
2810 2910 5.741040 GCTGACAGTTCTTCTCTTGTTTTTG 59.259 40.000 3.99 0.00 0.00 2.44
2811 2911 5.415701 TGCTGACAGTTCTTCTCTTGTTTTT 59.584 36.000 3.99 0.00 0.00 1.94
2812 2912 4.943705 TGCTGACAGTTCTTCTCTTGTTTT 59.056 37.500 3.99 0.00 0.00 2.43
2813 2913 4.517285 TGCTGACAGTTCTTCTCTTGTTT 58.483 39.130 3.99 0.00 0.00 2.83
2814 2914 4.142609 TGCTGACAGTTCTTCTCTTGTT 57.857 40.909 3.99 0.00 0.00 2.83
2815 2915 3.827008 TGCTGACAGTTCTTCTCTTGT 57.173 42.857 3.99 0.00 0.00 3.16
2816 2916 4.753610 TGATTGCTGACAGTTCTTCTCTTG 59.246 41.667 3.99 0.00 0.00 3.02
2817 2917 4.965814 TGATTGCTGACAGTTCTTCTCTT 58.034 39.130 3.99 0.00 0.00 2.85
2818 2918 4.040217 ACTGATTGCTGACAGTTCTTCTCT 59.960 41.667 3.99 0.00 43.52 3.10
2819 2919 4.314121 ACTGATTGCTGACAGTTCTTCTC 58.686 43.478 3.99 0.00 43.52 2.87
2820 2920 4.348863 ACTGATTGCTGACAGTTCTTCT 57.651 40.909 3.99 0.00 43.52 2.85
2821 2921 4.629200 CCTACTGATTGCTGACAGTTCTTC 59.371 45.833 13.27 0.00 43.52 2.87
2822 2922 4.040952 ACCTACTGATTGCTGACAGTTCTT 59.959 41.667 13.27 0.00 43.52 2.52
2823 2923 3.580458 ACCTACTGATTGCTGACAGTTCT 59.420 43.478 13.27 0.00 43.52 3.01
2824 2924 3.931578 ACCTACTGATTGCTGACAGTTC 58.068 45.455 13.27 0.24 43.52 3.01
2825 2925 4.067896 CAACCTACTGATTGCTGACAGTT 58.932 43.478 13.27 0.00 43.52 3.16
2826 2926 3.668447 CAACCTACTGATTGCTGACAGT 58.332 45.455 3.99 12.81 46.81 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.