Multiple sequence alignment - TraesCS6A01G264100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G264100 chr6A 100.000 5033 0 0 3513 8545 487117908 487122940 0.000000e+00 9295.0
1 TraesCS6A01G264100 chr6A 100.000 3151 0 0 1 3151 487114396 487117546 0.000000e+00 5819.0
2 TraesCS6A01G264100 chr6B 95.760 4693 128 30 3547 8205 523348607 523353262 0.000000e+00 7498.0
3 TraesCS6A01G264100 chr6B 93.810 1357 62 17 787 2134 523342295 523343638 0.000000e+00 2021.0
4 TraesCS6A01G264100 chr6B 95.842 1010 39 2 2133 3142 523343876 523344882 0.000000e+00 1629.0
5 TraesCS6A01G264100 chr6B 86.283 452 57 5 80 528 523341849 523342298 3.590000e-133 486.0
6 TraesCS6A01G264100 chr6D 95.281 4598 143 38 3524 8087 354602350 354597793 0.000000e+00 7221.0
7 TraesCS6A01G264100 chr6D 95.121 2357 83 18 787 3131 354605028 354602692 0.000000e+00 3687.0
8 TraesCS6A01G264100 chr6D 94.203 345 14 4 8201 8545 354596387 354596049 9.830000e-144 521.0
9 TraesCS6A01G264100 chr6D 82.159 454 53 16 85 528 354605460 354605025 1.750000e-96 364.0
10 TraesCS6A01G264100 chr3A 95.941 271 8 1 523 790 352500923 352501193 3.660000e-118 436.0
11 TraesCS6A01G264100 chr3A 87.654 243 25 4 1843 2084 293591391 293591629 2.350000e-70 278.0
12 TraesCS6A01G264100 chr7D 95.167 269 10 1 526 791 133333224 133332956 1.030000e-113 422.0
13 TraesCS6A01G264100 chr7D 83.607 244 30 7 1843 2082 518576854 518576617 4.020000e-53 220.0
14 TraesCS6A01G264100 chr7D 90.588 85 3 1 1 80 255249100 255249016 3.260000e-19 108.0
15 TraesCS6A01G264100 chr7D 90.588 85 3 1 1 80 469251408 469251324 3.260000e-19 108.0
16 TraesCS6A01G264100 chr7B 95.076 264 9 2 528 788 388900183 388900445 6.170000e-111 412.0
17 TraesCS6A01G264100 chr4A 94.403 268 12 1 526 790 200056288 200056021 7.980000e-110 409.0
18 TraesCS6A01G264100 chr3D 94.403 268 12 1 524 788 109257944 109257677 7.980000e-110 409.0
19 TraesCS6A01G264100 chr3D 90.588 85 3 1 1 80 235982892 235982808 3.260000e-19 108.0
20 TraesCS6A01G264100 chr7A 94.052 269 13 1 526 791 125710272 125710540 1.030000e-108 405.0
21 TraesCS6A01G264100 chr5B 94.007 267 13 1 525 788 432418421 432418687 1.340000e-107 401.0
22 TraesCS6A01G264100 chr5B 91.901 284 17 4 512 790 253884699 253884981 8.040000e-105 392.0
23 TraesCS6A01G264100 chr5B 90.588 85 3 2 1 80 259445237 259445321 3.260000e-19 108.0
24 TraesCS6A01G264100 chr2A 93.704 270 14 1 522 788 16797095 16797364 1.340000e-107 401.0
25 TraesCS6A01G264100 chr2A 83.817 241 34 4 1844 2082 572066546 572066309 3.100000e-54 224.0
26 TraesCS6A01G264100 chr2A 82.591 247 35 7 1841 2083 32339692 32339934 2.420000e-50 211.0
27 TraesCS6A01G264100 chr2A 77.206 136 28 3 5523 5657 752105717 752105584 9.200000e-10 76.8
28 TraesCS6A01G264100 chr1B 85.124 242 29 5 1844 2083 449710491 449710255 3.080000e-59 241.0
29 TraesCS6A01G264100 chr2D 84.360 211 30 3 1847 2056 380415610 380415402 4.040000e-48 204.0
30 TraesCS6A01G264100 chr1A 80.913 241 39 6 1844 2081 577975101 577975337 5.270000e-42 183.0
31 TraesCS6A01G264100 chr4D 90.588 85 3 1 1 80 252115039 252114955 3.260000e-19 108.0
32 TraesCS6A01G264100 chr3B 90.588 85 3 1 1 80 660061737 660061821 3.260000e-19 108.0
33 TraesCS6A01G264100 chr1D 89.535 86 4 2 1 81 264914361 264914276 4.220000e-18 104.0
34 TraesCS6A01G264100 chrUn 89.412 85 4 3 1 80 202609731 202609815 1.520000e-17 102.0
35 TraesCS6A01G264100 chrUn 89.412 85 4 3 1 80 395944370 395944454 1.520000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G264100 chr6A 487114396 487122940 8544 False 7557.00 9295 100.00000 1 8545 2 chr6A.!!$F1 8544
1 TraesCS6A01G264100 chr6B 523341849 523353262 11413 False 2908.50 7498 92.92375 80 8205 4 chr6B.!!$F1 8125
2 TraesCS6A01G264100 chr6D 354596049 354605460 9411 True 2948.25 7221 91.69100 85 8545 4 chr6D.!!$R1 8460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 544 0.249120 TGTATGCACGTGCTTAGGCT 59.751 50.000 37.59 18.65 42.66 4.58 F
533 546 0.461870 TATGCACGTGCTTAGGCTGG 60.462 55.000 37.59 0.00 42.66 4.85 F
754 767 0.530744 TTTCTCGGAGTGCGCTATGT 59.469 50.000 9.73 0.00 0.00 2.29 F
755 768 0.530744 TTCTCGGAGTGCGCTATGTT 59.469 50.000 9.73 0.00 0.00 2.71 F
1508 1531 0.824109 TCAAGCTAGGTGACCATCCG 59.176 55.000 3.63 0.00 0.00 4.18 F
2881 3149 0.391661 AGCGCCGACACATCATCTTT 60.392 50.000 2.29 0.00 0.00 2.52 F
3605 7501 1.203523 CGCAAATTTTCCCCATCCGAA 59.796 47.619 0.00 0.00 0.00 4.30 F
3615 7511 2.832129 TCCCCATCCGAATATCAGCTAC 59.168 50.000 0.00 0.00 0.00 3.58 F
5174 9079 1.952990 TGCTTTTCATCTCAACCGCAA 59.047 42.857 0.00 0.00 0.00 4.85 F
7098 11029 0.182061 TGGATTGAGGATGCAGAGGC 59.818 55.000 0.00 0.00 41.68 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1582 1.222567 AAGGCCCCCAATACAGGTAG 58.777 55.000 0.00 0.00 0.00 3.18 R
2448 2713 1.941325 CCAATAGCACGGAGGACTTC 58.059 55.000 0.00 0.00 0.00 3.01 R
2483 2748 2.939103 CTCCAATGAAGGCTTCGTAAGG 59.061 50.000 21.57 23.24 38.47 2.69 R
2636 2904 4.534500 ACCATCAATAGGTCCAACACAGTA 59.466 41.667 0.00 0.00 32.90 2.74 R
2938 3206 0.037326 CGCTTAGGACAACTGCCAGA 60.037 55.000 0.00 0.00 0.00 3.86 R
3845 7741 1.399727 GCACGGCAATGTACAGTTGAC 60.400 52.381 17.05 14.40 0.00 3.18 R
5003 8906 0.541392 TGCCATGCCATCGAAGTACT 59.459 50.000 0.00 0.00 0.00 2.73 R
5212 9117 3.349927 AGTCTGCAAATGCTCATTGCTA 58.650 40.909 17.97 7.71 43.37 3.49 R
7112 11043 5.046591 ACTTGCTCTACTAAGCCACATACAA 60.047 40.000 0.00 0.00 41.77 2.41 R
8141 12089 0.179020 CTGGTGTTGTGAAGCTGGGA 60.179 55.000 0.00 0.00 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.363306 AGTCTGGCTGAGATCGATCT 57.637 50.000 27.63 27.63 40.50 2.75
21 22 2.665165 AGTCTGGCTGAGATCGATCTT 58.335 47.619 27.90 12.68 37.25 2.40
22 23 2.622942 AGTCTGGCTGAGATCGATCTTC 59.377 50.000 27.90 20.05 37.25 2.87
23 24 2.360483 GTCTGGCTGAGATCGATCTTCA 59.640 50.000 27.90 22.94 37.25 3.02
24 25 3.026694 TCTGGCTGAGATCGATCTTCAA 58.973 45.455 27.90 15.86 37.25 2.69
25 26 3.067883 TCTGGCTGAGATCGATCTTCAAG 59.932 47.826 27.90 23.66 37.25 3.02
26 27 2.762887 TGGCTGAGATCGATCTTCAAGT 59.237 45.455 27.90 5.81 37.25 3.16
27 28 3.122297 GGCTGAGATCGATCTTCAAGTG 58.878 50.000 27.90 15.43 37.25 3.16
28 29 2.539274 GCTGAGATCGATCTTCAAGTGC 59.461 50.000 27.90 19.89 37.25 4.40
29 30 3.122297 CTGAGATCGATCTTCAAGTGCC 58.878 50.000 27.90 13.48 37.25 5.01
30 31 2.762887 TGAGATCGATCTTCAAGTGCCT 59.237 45.455 27.90 2.68 37.25 4.75
31 32 3.196469 TGAGATCGATCTTCAAGTGCCTT 59.804 43.478 27.90 2.13 37.25 4.35
32 33 4.402474 TGAGATCGATCTTCAAGTGCCTTA 59.598 41.667 27.90 0.00 37.25 2.69
33 34 5.069648 TGAGATCGATCTTCAAGTGCCTTAT 59.930 40.000 27.90 1.45 37.25 1.73
34 35 5.537188 AGATCGATCTTCAAGTGCCTTATC 58.463 41.667 22.32 0.00 31.97 1.75
35 36 3.706698 TCGATCTTCAAGTGCCTTATCG 58.293 45.455 0.00 0.00 32.73 2.92
36 37 2.797156 CGATCTTCAAGTGCCTTATCGG 59.203 50.000 0.00 0.00 29.83 4.18
37 38 3.490933 CGATCTTCAAGTGCCTTATCGGA 60.491 47.826 0.00 0.00 29.83 4.55
38 39 3.973206 TCTTCAAGTGCCTTATCGGAA 57.027 42.857 0.00 0.00 33.16 4.30
39 40 4.487714 TCTTCAAGTGCCTTATCGGAAT 57.512 40.909 0.00 0.00 33.16 3.01
40 41 5.607939 TCTTCAAGTGCCTTATCGGAATA 57.392 39.130 0.00 0.00 33.16 1.75
41 42 5.984725 TCTTCAAGTGCCTTATCGGAATAA 58.015 37.500 0.00 0.00 33.16 1.40
42 43 6.411376 TCTTCAAGTGCCTTATCGGAATAAA 58.589 36.000 0.00 0.00 33.16 1.40
43 44 6.882140 TCTTCAAGTGCCTTATCGGAATAAAA 59.118 34.615 0.00 0.00 33.16 1.52
44 45 6.677781 TCAAGTGCCTTATCGGAATAAAAG 57.322 37.500 0.00 0.00 33.16 2.27
45 46 6.177610 TCAAGTGCCTTATCGGAATAAAAGT 58.822 36.000 0.00 0.00 33.16 2.66
46 47 6.657541 TCAAGTGCCTTATCGGAATAAAAGTT 59.342 34.615 0.00 0.00 33.16 2.66
47 48 7.825270 TCAAGTGCCTTATCGGAATAAAAGTTA 59.175 33.333 0.00 0.00 33.16 2.24
48 49 7.787725 AGTGCCTTATCGGAATAAAAGTTAG 57.212 36.000 0.00 0.00 33.16 2.34
49 50 7.336396 AGTGCCTTATCGGAATAAAAGTTAGT 58.664 34.615 0.00 0.00 33.16 2.24
50 51 7.827729 AGTGCCTTATCGGAATAAAAGTTAGTT 59.172 33.333 0.00 0.00 33.16 2.24
51 52 8.121086 GTGCCTTATCGGAATAAAAGTTAGTTC 58.879 37.037 0.00 0.00 33.16 3.01
52 53 7.281549 TGCCTTATCGGAATAAAAGTTAGTTCC 59.718 37.037 0.00 0.00 37.38 3.62
59 60 7.912056 GGAATAAAAGTTAGTTCCGGTTACT 57.088 36.000 14.67 14.67 31.73 2.24
60 61 7.745972 GGAATAAAAGTTAGTTCCGGTTACTG 58.254 38.462 18.22 0.00 31.73 2.74
61 62 7.388776 GGAATAAAAGTTAGTTCCGGTTACTGT 59.611 37.037 18.22 2.65 31.73 3.55
62 63 5.996669 AAAAGTTAGTTCCGGTTACTGTG 57.003 39.130 18.22 0.00 0.00 3.66
63 64 3.672767 AGTTAGTTCCGGTTACTGTGG 57.327 47.619 18.22 0.00 0.00 4.17
64 65 2.301009 AGTTAGTTCCGGTTACTGTGGG 59.699 50.000 18.22 0.00 0.00 4.61
65 66 2.299867 GTTAGTTCCGGTTACTGTGGGA 59.700 50.000 18.22 0.06 0.00 4.37
66 67 1.426751 AGTTCCGGTTACTGTGGGAA 58.573 50.000 0.00 0.00 36.26 3.97
67 68 1.346722 AGTTCCGGTTACTGTGGGAAG 59.653 52.381 0.00 0.00 39.11 3.46
68 69 1.345415 GTTCCGGTTACTGTGGGAAGA 59.655 52.381 0.00 0.00 39.11 2.87
69 70 1.946984 TCCGGTTACTGTGGGAAGAT 58.053 50.000 0.00 0.00 0.00 2.40
70 71 3.104519 TCCGGTTACTGTGGGAAGATA 57.895 47.619 0.00 0.00 0.00 1.98
71 72 3.443052 TCCGGTTACTGTGGGAAGATAA 58.557 45.455 0.00 0.00 0.00 1.75
72 73 3.449737 TCCGGTTACTGTGGGAAGATAAG 59.550 47.826 0.00 0.00 0.00 1.73
73 74 3.195661 CGGTTACTGTGGGAAGATAAGC 58.804 50.000 0.00 0.00 0.00 3.09
74 75 3.369052 CGGTTACTGTGGGAAGATAAGCA 60.369 47.826 0.00 0.00 0.00 3.91
75 76 4.192317 GGTTACTGTGGGAAGATAAGCAG 58.808 47.826 0.00 0.00 0.00 4.24
76 77 4.081087 GGTTACTGTGGGAAGATAAGCAGA 60.081 45.833 0.00 0.00 0.00 4.26
77 78 5.396884 GGTTACTGTGGGAAGATAAGCAGAT 60.397 44.000 0.00 0.00 0.00 2.90
78 79 4.851639 ACTGTGGGAAGATAAGCAGATT 57.148 40.909 0.00 0.00 0.00 2.40
98 99 3.502191 TTGCGAACAAAGTCAAAGCTT 57.498 38.095 0.00 0.00 31.21 3.74
100 101 4.209452 TGCGAACAAAGTCAAAGCTTAG 57.791 40.909 0.00 0.00 0.00 2.18
106 107 4.729868 ACAAAGTCAAAGCTTAGGTCCAT 58.270 39.130 0.00 0.00 0.00 3.41
117 118 8.956426 CAAAGCTTAGGTCCATACTAAAAATGA 58.044 33.333 0.00 0.00 30.68 2.57
160 161 2.557869 TGTATGTACCAAGGAGCCCTT 58.442 47.619 0.99 0.99 45.88 3.95
180 181 5.529060 CCCTTAGGAATGTTGATAGCTTGTC 59.471 44.000 0.00 0.00 33.47 3.18
184 185 4.081420 AGGAATGTTGATAGCTTGTCTCGT 60.081 41.667 0.00 0.00 0.00 4.18
206 207 2.975193 CAACATGACGACGACGAACTTA 59.025 45.455 15.32 0.00 42.66 2.24
231 232 6.347859 GACTAGGAGTCAAAATATCGGGAT 57.652 41.667 1.71 0.00 44.45 3.85
234 235 7.011382 ACTAGGAGTCAAAATATCGGGATACT 58.989 38.462 0.00 0.00 0.00 2.12
242 243 6.996282 TCAAAATATCGGGATACTTTCCTTCC 59.004 38.462 0.00 0.00 44.75 3.46
243 244 5.500546 AATATCGGGATACTTTCCTTCCC 57.499 43.478 0.00 0.00 44.75 3.97
255 256 6.002653 ACTTTCCTTCCCATGTATACTTCC 57.997 41.667 4.17 0.00 0.00 3.46
258 259 4.641868 TCCTTCCCATGTATACTTCCCTT 58.358 43.478 4.17 0.00 0.00 3.95
279 280 6.865726 CCCTTTCACTAGATATGAGTTCATCG 59.134 42.308 0.00 0.00 37.76 3.84
280 281 6.364706 CCTTTCACTAGATATGAGTTCATCGC 59.635 42.308 0.00 0.00 37.76 4.58
286 287 5.728637 AGATATGAGTTCATCGCCACATA 57.271 39.130 0.00 0.00 37.76 2.29
287 288 6.291648 AGATATGAGTTCATCGCCACATAT 57.708 37.500 0.00 0.00 37.76 1.78
333 345 0.666274 CGCCACACACACGTAGACAT 60.666 55.000 0.00 0.00 0.00 3.06
341 353 2.560981 ACACACGTAGACATCACATCCA 59.439 45.455 0.00 0.00 0.00 3.41
342 354 3.195610 ACACACGTAGACATCACATCCAT 59.804 43.478 0.00 0.00 0.00 3.41
389 401 1.667236 CGCCACCATCAAATAGAGCA 58.333 50.000 0.00 0.00 0.00 4.26
393 405 3.696051 GCCACCATCAAATAGAGCAGAAA 59.304 43.478 0.00 0.00 0.00 2.52
394 406 4.201990 GCCACCATCAAATAGAGCAGAAAG 60.202 45.833 0.00 0.00 0.00 2.62
395 407 4.201990 CCACCATCAAATAGAGCAGAAAGC 60.202 45.833 0.00 0.00 46.19 3.51
422 434 2.674852 CGATCACAGACTCCCAACAATG 59.325 50.000 0.00 0.00 0.00 2.82
425 437 2.165167 CACAGACTCCCAACAATGCAT 58.835 47.619 0.00 0.00 0.00 3.96
440 452 6.198650 ACAATGCATCAGATTCGATGAAAA 57.801 33.333 17.09 6.89 44.67 2.29
446 458 5.277490 GCATCAGATTCGATGAAAAATCGGA 60.277 40.000 17.09 0.00 44.67 4.55
452 464 4.948341 TCGATGAAAAATCGGATCCCTA 57.052 40.909 6.06 0.00 41.45 3.53
458 470 9.999040 CGATGAAAAATCGGATCCCTAAGGGAA 62.999 44.444 6.06 0.00 45.09 3.97
470 482 4.181309 CCTAAGGGAATATCGCTCACTC 57.819 50.000 0.00 0.00 38.84 3.51
475 488 4.730966 AGGGAATATCGCTCACTCTCTTA 58.269 43.478 0.00 0.00 34.27 2.10
479 492 9.543474 AGGGAATATCGCTCACTCTCTTAGAGT 62.543 44.444 9.25 3.73 42.97 3.24
492 505 6.398234 TCTCTTAGAGTTGCTCATATGGAC 57.602 41.667 9.25 0.00 32.06 4.02
528 541 1.526986 GCGTTGTATGCACGTGCTTAG 60.527 52.381 37.59 23.78 42.66 2.18
529 542 1.060553 CGTTGTATGCACGTGCTTAGG 59.939 52.381 37.59 19.52 42.66 2.69
530 543 1.083489 TTGTATGCACGTGCTTAGGC 58.917 50.000 37.59 24.25 42.66 3.93
531 544 0.249120 TGTATGCACGTGCTTAGGCT 59.751 50.000 37.59 18.65 42.66 4.58
532 545 0.652592 GTATGCACGTGCTTAGGCTG 59.347 55.000 37.59 0.21 42.66 4.85
533 546 0.461870 TATGCACGTGCTTAGGCTGG 60.462 55.000 37.59 0.00 42.66 4.85
534 547 2.358737 GCACGTGCTTAGGCTGGT 60.359 61.111 32.55 0.00 39.59 4.00
535 548 2.391389 GCACGTGCTTAGGCTGGTC 61.391 63.158 32.55 0.00 39.59 4.02
536 549 2.094659 CACGTGCTTAGGCTGGTCG 61.095 63.158 0.82 1.08 39.59 4.79
537 550 2.261671 CGTGCTTAGGCTGGTCGT 59.738 61.111 0.00 0.00 39.59 4.34
538 551 2.094659 CGTGCTTAGGCTGGTCGTG 61.095 63.158 0.00 0.00 39.59 4.35
539 552 1.741770 GTGCTTAGGCTGGTCGTGG 60.742 63.158 0.00 0.00 39.59 4.94
540 553 2.125106 GCTTAGGCTGGTCGTGGG 60.125 66.667 0.00 0.00 35.22 4.61
541 554 2.584608 CTTAGGCTGGTCGTGGGG 59.415 66.667 0.00 0.00 0.00 4.96
542 555 1.987855 CTTAGGCTGGTCGTGGGGA 60.988 63.158 0.00 0.00 0.00 4.81
543 556 1.961180 CTTAGGCTGGTCGTGGGGAG 61.961 65.000 0.00 0.00 0.00 4.30
544 557 2.741878 TTAGGCTGGTCGTGGGGAGT 62.742 60.000 0.00 0.00 0.00 3.85
545 558 1.866483 TAGGCTGGTCGTGGGGAGTA 61.866 60.000 0.00 0.00 0.00 2.59
546 559 2.288025 GGCTGGTCGTGGGGAGTAA 61.288 63.158 0.00 0.00 0.00 2.24
547 560 1.079336 GCTGGTCGTGGGGAGTAAC 60.079 63.158 0.00 0.00 0.00 2.50
548 561 1.542187 GCTGGTCGTGGGGAGTAACT 61.542 60.000 0.00 0.00 0.00 2.24
549 562 0.974383 CTGGTCGTGGGGAGTAACTT 59.026 55.000 0.00 0.00 0.00 2.66
550 563 2.173519 CTGGTCGTGGGGAGTAACTTA 58.826 52.381 0.00 0.00 0.00 2.24
551 564 2.764572 CTGGTCGTGGGGAGTAACTTAT 59.235 50.000 0.00 0.00 0.00 1.73
552 565 3.956199 CTGGTCGTGGGGAGTAACTTATA 59.044 47.826 0.00 0.00 0.00 0.98
553 566 3.701040 TGGTCGTGGGGAGTAACTTATAC 59.299 47.826 0.00 0.00 0.00 1.47
554 567 3.956848 GGTCGTGGGGAGTAACTTATACT 59.043 47.826 0.00 0.00 0.00 2.12
555 568 5.133221 GGTCGTGGGGAGTAACTTATACTA 58.867 45.833 0.00 0.00 0.00 1.82
556 569 5.240403 GGTCGTGGGGAGTAACTTATACTAG 59.760 48.000 0.00 0.00 0.00 2.57
557 570 5.825151 GTCGTGGGGAGTAACTTATACTAGT 59.175 44.000 0.00 0.00 0.00 2.57
558 571 5.824624 TCGTGGGGAGTAACTTATACTAGTG 59.175 44.000 5.39 0.00 0.00 2.74
559 572 5.591877 CGTGGGGAGTAACTTATACTAGTGT 59.408 44.000 5.39 0.39 0.00 3.55
560 573 6.238593 CGTGGGGAGTAACTTATACTAGTGTC 60.239 46.154 5.39 0.00 0.00 3.67
561 574 6.604795 GTGGGGAGTAACTTATACTAGTGTCA 59.395 42.308 5.39 0.00 0.00 3.58
562 575 7.287235 GTGGGGAGTAACTTATACTAGTGTCAT 59.713 40.741 5.39 0.00 0.00 3.06
563 576 8.505246 TGGGGAGTAACTTATACTAGTGTCATA 58.495 37.037 5.39 0.00 0.00 2.15
564 577 8.791675 GGGGAGTAACTTATACTAGTGTCATAC 58.208 40.741 5.39 1.96 0.00 2.39
565 578 9.347240 GGGAGTAACTTATACTAGTGTCATACA 57.653 37.037 5.39 0.00 0.00 2.29
572 585 9.309224 ACTTATACTAGTGTCATACATATGGCA 57.691 33.333 5.39 2.02 45.17 4.92
580 593 6.089249 TGTCATACATATGGCACTAGTCTG 57.911 41.667 7.80 0.00 42.78 3.51
581 594 5.833131 TGTCATACATATGGCACTAGTCTGA 59.167 40.000 7.80 0.00 42.78 3.27
582 595 6.015940 TGTCATACATATGGCACTAGTCTGAG 60.016 42.308 7.80 0.00 42.78 3.35
583 596 6.015856 GTCATACATATGGCACTAGTCTGAGT 60.016 42.308 7.80 0.00 38.17 3.41
584 597 6.551227 TCATACATATGGCACTAGTCTGAGTT 59.449 38.462 7.80 0.00 34.50 3.01
585 598 7.724061 TCATACATATGGCACTAGTCTGAGTTA 59.276 37.037 7.80 0.00 34.50 2.24
586 599 6.150396 ACATATGGCACTAGTCTGAGTTAC 57.850 41.667 7.80 0.00 0.00 2.50
587 600 5.894393 ACATATGGCACTAGTCTGAGTTACT 59.106 40.000 7.80 0.00 0.00 2.24
588 601 7.061054 ACATATGGCACTAGTCTGAGTTACTA 58.939 38.462 7.80 0.00 0.00 1.82
589 602 5.838531 ATGGCACTAGTCTGAGTTACTAC 57.161 43.478 0.00 0.00 0.00 2.73
590 603 4.015084 TGGCACTAGTCTGAGTTACTACC 58.985 47.826 0.00 0.00 0.00 3.18
591 604 4.263816 TGGCACTAGTCTGAGTTACTACCT 60.264 45.833 0.00 0.00 0.00 3.08
592 605 4.705991 GGCACTAGTCTGAGTTACTACCTT 59.294 45.833 0.00 0.00 0.00 3.50
593 606 5.163632 GGCACTAGTCTGAGTTACTACCTTC 60.164 48.000 0.00 0.00 0.00 3.46
594 607 5.415077 GCACTAGTCTGAGTTACTACCTTCA 59.585 44.000 0.00 0.00 0.00 3.02
595 608 6.095720 GCACTAGTCTGAGTTACTACCTTCAT 59.904 42.308 0.00 0.00 0.00 2.57
596 609 7.282675 GCACTAGTCTGAGTTACTACCTTCATA 59.717 40.741 0.00 0.00 0.00 2.15
597 610 8.832521 CACTAGTCTGAGTTACTACCTTCATAG 58.167 40.741 0.00 0.00 0.00 2.23
598 611 8.550585 ACTAGTCTGAGTTACTACCTTCATAGT 58.449 37.037 0.00 0.00 38.89 2.12
599 612 7.633193 AGTCTGAGTTACTACCTTCATAGTG 57.367 40.000 0.00 0.00 36.09 2.74
600 613 6.095720 AGTCTGAGTTACTACCTTCATAGTGC 59.904 42.308 0.00 0.00 36.09 4.40
601 614 5.949952 TCTGAGTTACTACCTTCATAGTGCA 59.050 40.000 0.00 0.00 36.09 4.57
602 615 6.436218 TCTGAGTTACTACCTTCATAGTGCAA 59.564 38.462 0.00 0.00 36.09 4.08
603 616 6.999950 TGAGTTACTACCTTCATAGTGCAAA 58.000 36.000 0.00 0.00 36.09 3.68
604 617 7.097192 TGAGTTACTACCTTCATAGTGCAAAG 58.903 38.462 0.00 0.00 36.09 2.77
605 618 7.005709 AGTTACTACCTTCATAGTGCAAAGT 57.994 36.000 0.00 0.00 36.09 2.66
606 619 8.130671 AGTTACTACCTTCATAGTGCAAAGTA 57.869 34.615 0.00 0.00 36.09 2.24
607 620 8.591072 AGTTACTACCTTCATAGTGCAAAGTAA 58.409 33.333 0.00 0.00 36.09 2.24
608 621 8.654215 GTTACTACCTTCATAGTGCAAAGTAAC 58.346 37.037 0.00 0.00 39.37 2.50
609 622 6.765403 ACTACCTTCATAGTGCAAAGTAACA 58.235 36.000 0.00 0.00 34.02 2.41
610 623 7.394816 ACTACCTTCATAGTGCAAAGTAACAT 58.605 34.615 0.00 0.00 34.02 2.71
611 624 8.537016 ACTACCTTCATAGTGCAAAGTAACATA 58.463 33.333 0.00 0.00 34.02 2.29
612 625 7.849804 ACCTTCATAGTGCAAAGTAACATAG 57.150 36.000 0.00 0.00 0.00 2.23
613 626 7.394816 ACCTTCATAGTGCAAAGTAACATAGT 58.605 34.615 0.00 0.00 0.00 2.12
614 627 8.537016 ACCTTCATAGTGCAAAGTAACATAGTA 58.463 33.333 0.00 0.00 0.00 1.82
615 628 9.035607 CCTTCATAGTGCAAAGTAACATAGTAG 57.964 37.037 0.00 0.00 0.00 2.57
616 629 9.587772 CTTCATAGTGCAAAGTAACATAGTAGT 57.412 33.333 0.00 0.00 0.00 2.73
621 634 7.893658 AGTGCAAAGTAACATAGTAGTAGTGT 58.106 34.615 0.00 0.00 0.00 3.55
622 635 8.027771 AGTGCAAAGTAACATAGTAGTAGTGTC 58.972 37.037 0.00 0.00 0.00 3.67
623 636 7.811236 GTGCAAAGTAACATAGTAGTAGTGTCA 59.189 37.037 0.00 0.00 0.00 3.58
624 637 8.528643 TGCAAAGTAACATAGTAGTAGTGTCAT 58.471 33.333 0.00 0.00 0.00 3.06
632 645 9.908747 AACATAGTAGTAGTGTCATAGAAGACT 57.091 33.333 0.00 0.00 39.27 3.24
633 646 9.908747 ACATAGTAGTAGTGTCATAGAAGACTT 57.091 33.333 0.00 0.00 39.27 3.01
637 650 9.469097 AGTAGTAGTGTCATAGAAGACTTCATT 57.531 33.333 17.34 1.25 39.27 2.57
654 667 9.810545 AGACTTCATTAATTAGCTTGTAGACTC 57.189 33.333 0.00 0.00 0.00 3.36
655 668 9.587772 GACTTCATTAATTAGCTTGTAGACTCA 57.412 33.333 0.00 0.00 0.00 3.41
662 675 9.587772 TTAATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
663 676 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
664 677 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
665 678 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
666 679 4.629200 GCTTGTAGACTCATCTTGTCTTGG 59.371 45.833 1.67 0.00 41.45 3.61
667 680 5.567623 GCTTGTAGACTCATCTTGTCTTGGA 60.568 44.000 1.67 0.00 41.45 3.53
668 681 6.419484 TTGTAGACTCATCTTGTCTTGGAA 57.581 37.500 1.67 0.00 41.45 3.53
669 682 6.419484 TGTAGACTCATCTTGTCTTGGAAA 57.581 37.500 1.67 0.00 41.45 3.13
670 683 6.459066 TGTAGACTCATCTTGTCTTGGAAAG 58.541 40.000 1.67 0.00 41.45 2.62
671 684 4.322567 AGACTCATCTTGTCTTGGAAAGC 58.677 43.478 0.00 0.00 45.70 3.51
672 685 3.070018 ACTCATCTTGTCTTGGAAAGCG 58.930 45.455 0.00 0.00 45.70 4.68
673 686 1.806542 TCATCTTGTCTTGGAAAGCGC 59.193 47.619 0.00 0.00 45.70 5.92
674 687 1.808945 CATCTTGTCTTGGAAAGCGCT 59.191 47.619 2.64 2.64 45.70 5.92
675 688 2.831685 TCTTGTCTTGGAAAGCGCTA 57.168 45.000 12.05 0.00 45.70 4.26
676 689 3.334583 TCTTGTCTTGGAAAGCGCTAT 57.665 42.857 12.05 0.00 45.70 2.97
677 690 3.002791 TCTTGTCTTGGAAAGCGCTATG 58.997 45.455 12.05 0.00 45.70 2.23
678 691 2.472695 TGTCTTGGAAAGCGCTATGT 57.527 45.000 12.05 0.00 45.70 2.29
679 692 2.778299 TGTCTTGGAAAGCGCTATGTT 58.222 42.857 12.05 0.00 45.70 2.71
680 693 3.932822 TGTCTTGGAAAGCGCTATGTTA 58.067 40.909 12.05 0.00 45.70 2.41
681 694 3.682858 TGTCTTGGAAAGCGCTATGTTAC 59.317 43.478 12.05 2.15 45.70 2.50
682 695 3.682858 GTCTTGGAAAGCGCTATGTTACA 59.317 43.478 12.05 5.56 45.70 2.41
683 696 3.932710 TCTTGGAAAGCGCTATGTTACAG 59.067 43.478 12.05 3.17 45.70 2.74
684 697 3.328382 TGGAAAGCGCTATGTTACAGT 57.672 42.857 12.05 0.00 0.00 3.55
685 698 4.459390 TGGAAAGCGCTATGTTACAGTA 57.541 40.909 12.05 0.00 0.00 2.74
686 699 4.823157 TGGAAAGCGCTATGTTACAGTAA 58.177 39.130 12.05 0.00 0.00 2.24
687 700 4.628333 TGGAAAGCGCTATGTTACAGTAAC 59.372 41.667 12.05 15.58 39.11 2.50
688 701 8.947657 CTTGGAAAGCGCTATGTTACAGTAACA 61.948 40.741 25.09 25.09 44.55 2.41
719 732 9.832445 ATGTTACCACCTCTTATTAACTACATG 57.168 33.333 0.00 0.00 0.00 3.21
720 733 7.767198 TGTTACCACCTCTTATTAACTACATGC 59.233 37.037 0.00 0.00 0.00 4.06
721 734 5.681639 ACCACCTCTTATTAACTACATGCC 58.318 41.667 0.00 0.00 0.00 4.40
722 735 5.190925 ACCACCTCTTATTAACTACATGCCA 59.809 40.000 0.00 0.00 0.00 4.92
723 736 5.527582 CCACCTCTTATTAACTACATGCCAC 59.472 44.000 0.00 0.00 0.00 5.01
724 737 6.112734 CACCTCTTATTAACTACATGCCACA 58.887 40.000 0.00 0.00 0.00 4.17
725 738 6.037172 CACCTCTTATTAACTACATGCCACAC 59.963 42.308 0.00 0.00 0.00 3.82
726 739 6.112734 CCTCTTATTAACTACATGCCACACA 58.887 40.000 0.00 0.00 0.00 3.72
727 740 6.597672 CCTCTTATTAACTACATGCCACACAA 59.402 38.462 0.00 0.00 0.00 3.33
728 741 7.201644 CCTCTTATTAACTACATGCCACACAAG 60.202 40.741 0.00 0.00 0.00 3.16
729 742 4.701956 ATTAACTACATGCCACACAAGC 57.298 40.909 0.00 0.00 0.00 4.01
730 743 1.979855 AACTACATGCCACACAAGCA 58.020 45.000 0.00 0.00 45.94 3.91
731 744 1.979855 ACTACATGCCACACAAGCAA 58.020 45.000 0.00 0.00 44.83 3.91
732 745 2.305928 ACTACATGCCACACAAGCAAA 58.694 42.857 0.00 0.00 44.83 3.68
733 746 2.692557 ACTACATGCCACACAAGCAAAA 59.307 40.909 0.00 0.00 44.83 2.44
734 747 2.687700 ACATGCCACACAAGCAAAAA 57.312 40.000 0.00 0.00 44.83 1.94
735 748 3.196939 ACATGCCACACAAGCAAAAAT 57.803 38.095 0.00 0.00 44.83 1.82
736 749 3.543665 ACATGCCACACAAGCAAAAATT 58.456 36.364 0.00 0.00 44.83 1.82
737 750 3.946558 ACATGCCACACAAGCAAAAATTT 59.053 34.783 0.00 0.00 44.83 1.82
738 751 4.035441 ACATGCCACACAAGCAAAAATTTC 59.965 37.500 0.00 0.00 44.83 2.17
739 752 3.871485 TGCCACACAAGCAAAAATTTCT 58.129 36.364 0.00 0.00 37.28 2.52
740 753 3.870419 TGCCACACAAGCAAAAATTTCTC 59.130 39.130 0.00 0.00 37.28 2.87
741 754 3.060339 GCCACACAAGCAAAAATTTCTCG 60.060 43.478 0.00 0.00 0.00 4.04
742 755 3.490526 CCACACAAGCAAAAATTTCTCGG 59.509 43.478 0.00 0.00 0.00 4.63
743 756 4.358851 CACACAAGCAAAAATTTCTCGGA 58.641 39.130 0.00 0.00 0.00 4.55
744 757 4.442073 CACACAAGCAAAAATTTCTCGGAG 59.558 41.667 0.00 0.00 0.00 4.63
745 758 4.097892 ACACAAGCAAAAATTTCTCGGAGT 59.902 37.500 4.69 0.00 0.00 3.85
746 759 4.442073 CACAAGCAAAAATTTCTCGGAGTG 59.558 41.667 4.69 0.00 0.00 3.51
747 760 3.288809 AGCAAAAATTTCTCGGAGTGC 57.711 42.857 4.69 5.71 0.00 4.40
748 761 1.978782 GCAAAAATTTCTCGGAGTGCG 59.021 47.619 4.69 0.00 0.00 5.34
749 762 1.978782 CAAAAATTTCTCGGAGTGCGC 59.021 47.619 0.00 0.00 0.00 6.09
750 763 1.523758 AAAATTTCTCGGAGTGCGCT 58.476 45.000 9.73 0.00 0.00 5.92
751 764 2.380084 AAATTTCTCGGAGTGCGCTA 57.620 45.000 9.73 0.00 0.00 4.26
752 765 2.604046 AATTTCTCGGAGTGCGCTAT 57.396 45.000 9.73 0.00 0.00 2.97
753 766 1.858091 ATTTCTCGGAGTGCGCTATG 58.142 50.000 9.73 0.00 0.00 2.23
754 767 0.530744 TTTCTCGGAGTGCGCTATGT 59.469 50.000 9.73 0.00 0.00 2.29
755 768 0.530744 TTCTCGGAGTGCGCTATGTT 59.469 50.000 9.73 0.00 0.00 2.71
756 769 1.385528 TCTCGGAGTGCGCTATGTTA 58.614 50.000 9.73 0.00 0.00 2.41
757 770 1.065102 TCTCGGAGTGCGCTATGTTAC 59.935 52.381 9.73 0.00 0.00 2.50
758 771 1.065701 CTCGGAGTGCGCTATGTTACT 59.934 52.381 9.73 1.27 0.00 2.24
759 772 1.475280 TCGGAGTGCGCTATGTTACTT 59.525 47.619 9.73 0.00 0.00 2.24
760 773 1.588404 CGGAGTGCGCTATGTTACTTG 59.412 52.381 9.73 0.00 0.00 3.16
761 774 1.327764 GGAGTGCGCTATGTTACTTGC 59.672 52.381 9.73 0.00 0.00 4.01
762 775 2.271800 GAGTGCGCTATGTTACTTGCT 58.728 47.619 9.73 0.00 0.00 3.91
763 776 3.444916 GAGTGCGCTATGTTACTTGCTA 58.555 45.455 9.73 0.00 0.00 3.49
764 777 3.857052 AGTGCGCTATGTTACTTGCTAA 58.143 40.909 9.73 0.00 0.00 3.09
765 778 3.865745 AGTGCGCTATGTTACTTGCTAAG 59.134 43.478 9.73 0.00 0.00 2.18
766 779 3.617263 GTGCGCTATGTTACTTGCTAAGT 59.383 43.478 9.73 6.74 45.40 2.24
767 780 4.092968 GTGCGCTATGTTACTTGCTAAGTT 59.907 41.667 9.73 0.00 42.81 2.66
768 781 5.290158 GTGCGCTATGTTACTTGCTAAGTTA 59.710 40.000 9.73 0.00 42.81 2.24
769 782 5.290158 TGCGCTATGTTACTTGCTAAGTTAC 59.710 40.000 9.73 8.42 42.81 2.50
770 783 5.519206 GCGCTATGTTACTTGCTAAGTTACT 59.481 40.000 0.00 0.00 40.62 2.24
771 784 6.035758 GCGCTATGTTACTTGCTAAGTTACTT 59.964 38.462 0.00 2.32 40.62 2.24
772 785 7.610509 CGCTATGTTACTTGCTAAGTTACTTC 58.389 38.462 0.00 0.00 40.62 3.01
773 786 7.254017 CGCTATGTTACTTGCTAAGTTACTTCC 60.254 40.741 0.00 0.00 40.62 3.46
774 787 7.548075 GCTATGTTACTTGCTAAGTTACTTCCA 59.452 37.037 0.00 0.00 40.62 3.53
775 788 7.668525 ATGTTACTTGCTAAGTTACTTCCAC 57.331 36.000 0.00 0.00 40.62 4.02
776 789 6.823497 TGTTACTTGCTAAGTTACTTCCACT 58.177 36.000 0.00 0.00 40.62 4.00
777 790 7.954835 TGTTACTTGCTAAGTTACTTCCACTA 58.045 34.615 0.00 0.00 40.62 2.74
778 791 8.591072 TGTTACTTGCTAAGTTACTTCCACTAT 58.409 33.333 0.00 0.00 40.62 2.12
779 792 8.870879 GTTACTTGCTAAGTTACTTCCACTATG 58.129 37.037 0.00 0.00 42.81 2.23
780 793 7.241042 ACTTGCTAAGTTACTTCCACTATGA 57.759 36.000 0.00 0.00 39.04 2.15
781 794 7.097834 ACTTGCTAAGTTACTTCCACTATGAC 58.902 38.462 0.00 0.00 39.04 3.06
782 795 6.852420 TGCTAAGTTACTTCCACTATGACT 57.148 37.500 0.00 0.00 0.00 3.41
783 796 7.949690 TGCTAAGTTACTTCCACTATGACTA 57.050 36.000 0.00 0.00 0.00 2.59
784 797 7.997482 TGCTAAGTTACTTCCACTATGACTAG 58.003 38.462 0.00 0.00 0.00 2.57
785 798 6.919115 GCTAAGTTACTTCCACTATGACTAGC 59.081 42.308 0.00 0.00 0.00 3.42
799 812 7.591795 CACTATGACTAGCCTTATAAACGTCTG 59.408 40.741 0.00 0.00 0.00 3.51
937 958 4.152045 TGCGTGATTTGATCAAAATTTGCC 59.848 37.500 23.91 11.71 41.69 4.52
938 959 4.721785 GCGTGATTTGATCAAAATTTGCCG 60.722 41.667 23.91 18.73 41.69 5.69
1045 1066 2.448736 GTCCCATCTCCCCCTCCC 60.449 72.222 0.00 0.00 0.00 4.30
1046 1067 2.628465 TCCCATCTCCCCCTCCCT 60.628 66.667 0.00 0.00 0.00 4.20
1075 1096 4.845307 CTTCCCTCCCCCTCCCCC 62.845 77.778 0.00 0.00 0.00 5.40
1278 1299 2.025767 CTGACATGCTCCTCCTCCCG 62.026 65.000 0.00 0.00 0.00 5.14
1328 1350 1.961277 CCCGTCGTCTTTGCAGCTT 60.961 57.895 0.00 0.00 0.00 3.74
1508 1531 0.824109 TCAAGCTAGGTGACCATCCG 59.176 55.000 3.63 0.00 0.00 4.18
1559 1582 1.923864 CGTGTTTTGACCTGGTTTTGC 59.076 47.619 0.00 0.00 0.00 3.68
1563 1586 3.131400 TGTTTTGACCTGGTTTTGCTACC 59.869 43.478 0.00 0.00 38.73 3.18
1572 1595 3.426615 TGGTTTTGCTACCTGTATTGGG 58.573 45.455 0.00 0.00 39.04 4.12
1647 1670 2.715046 TCTGTGGACATCAAATCTGCC 58.285 47.619 0.00 0.00 0.00 4.85
1706 1729 8.521059 GTTGAAGTTACATTTTCTTGTTTCGAC 58.479 33.333 0.00 0.00 0.00 4.20
1711 1734 8.030106 AGTTACATTTTCTTGTTTCGACCAAAA 58.970 29.630 0.00 0.00 0.00 2.44
1716 1739 5.828299 TTCTTGTTTCGACCAAAATCTGT 57.172 34.783 0.00 0.00 0.00 3.41
1718 1741 4.274950 TCTTGTTTCGACCAAAATCTGTCC 59.725 41.667 0.00 0.00 0.00 4.02
1868 1893 6.973642 ACTCCCTCCATTTCAATGAATAAGA 58.026 36.000 0.00 0.00 38.70 2.10
1875 1900 3.383546 TTCAATGAATAAGACGCGCAC 57.616 42.857 5.73 0.00 0.00 5.34
1895 1920 4.982295 GCACGCTTTCCAAAATCTAACTTT 59.018 37.500 0.00 0.00 0.00 2.66
2102 2127 1.343075 TGGGCTACTAGGTGAGAAGGG 60.343 57.143 0.00 0.00 0.00 3.95
2126 2151 7.183460 GGTAGGATGGAGTACCTAGACAATAT 58.817 42.308 0.00 0.00 39.10 1.28
2257 2521 7.488150 GCAAGTAGCCATGTTTCTTTTATTACC 59.512 37.037 0.00 0.00 37.23 2.85
2402 2667 8.903820 GCACAACCTTAGGAATAGATTAATTGT 58.096 33.333 4.77 0.00 0.00 2.71
2436 2701 2.706190 AGGTCCACTGAAGTTGTTAGCT 59.294 45.455 0.00 0.00 0.00 3.32
2439 2704 3.877508 GTCCACTGAAGTTGTTAGCTGTT 59.122 43.478 0.00 0.00 0.00 3.16
2445 2710 7.920682 CCACTGAAGTTGTTAGCTGTTATTTTT 59.079 33.333 0.00 0.00 0.00 1.94
2483 2748 4.094590 GCTATTGGCATGCTATGAGATGAC 59.905 45.833 18.92 0.00 41.35 3.06
2581 2847 5.473504 AGATTGAGCGACACCACTTATTTTT 59.526 36.000 0.00 0.00 0.00 1.94
2741 3009 0.925558 TTATGGAGGCCCTTGCATGA 59.074 50.000 8.99 0.00 40.13 3.07
2836 3104 7.065324 CCGTAGAGTAAATTAAACAATCAGGCA 59.935 37.037 0.00 0.00 0.00 4.75
2881 3149 0.391661 AGCGCCGACACATCATCTTT 60.392 50.000 2.29 0.00 0.00 2.52
2938 3206 5.398012 GGACTAATTGGCCTGGAATCTAACT 60.398 44.000 3.32 0.00 41.93 2.24
3008 3276 2.694109 GCTCTTGTATTCCCCTCTACGT 59.306 50.000 0.00 0.00 0.00 3.57
3111 3379 3.726557 ATCTGCATTCCAGTTTCCAGA 57.273 42.857 0.00 0.00 42.38 3.86
3597 7493 3.192633 ACTGGATACACGCAAATTTTCCC 59.807 43.478 0.00 0.00 46.17 3.97
3605 7501 1.203523 CGCAAATTTTCCCCATCCGAA 59.796 47.619 0.00 0.00 0.00 4.30
3615 7511 2.832129 TCCCCATCCGAATATCAGCTAC 59.168 50.000 0.00 0.00 0.00 3.58
3765 7661 4.511527 GAAAGACTCTGCTCCATCATCAA 58.488 43.478 0.00 0.00 0.00 2.57
3845 7741 7.895975 TCTGAAGTTTGACAGTCATATCTTG 57.104 36.000 3.45 0.40 35.84 3.02
4089 7985 7.565680 TGTAAATCCTTCCTCTCCTAACATTC 58.434 38.462 0.00 0.00 0.00 2.67
4119 8015 6.869695 TCAGCATTCTCACATAAATTGCAAT 58.130 32.000 5.99 5.99 0.00 3.56
4208 8104 3.736720 TGTCAGATCATGCATTAGCCTC 58.263 45.455 0.00 0.00 41.13 4.70
4345 8241 3.376859 TGATACCAACAGCGCATAAAAGG 59.623 43.478 11.47 6.10 0.00 3.11
4546 8442 5.904362 AAAACTCATCAGCTACATTTCCC 57.096 39.130 0.00 0.00 0.00 3.97
4769 8672 3.056607 CCATAACTTGGGCTCCACTTTTG 60.057 47.826 0.00 0.00 42.33 2.44
4824 8727 7.767198 CCTCCAACTATTTAAACGATCCAGTTA 59.233 37.037 0.00 0.00 33.41 2.24
4825 8728 9.326413 CTCCAACTATTTAAACGATCCAGTTAT 57.674 33.333 0.00 0.00 33.41 1.89
4826 8729 9.321562 TCCAACTATTTAAACGATCCAGTTATC 57.678 33.333 0.00 0.00 33.41 1.75
4827 8730 9.104965 CCAACTATTTAAACGATCCAGTTATCA 57.895 33.333 0.00 0.00 33.41 2.15
4828 8731 9.916397 CAACTATTTAAACGATCCAGTTATCAC 57.084 33.333 0.00 0.00 33.41 3.06
4829 8732 9.886132 AACTATTTAAACGATCCAGTTATCACT 57.114 29.630 0.00 0.00 33.41 3.41
4830 8733 9.886132 ACTATTTAAACGATCCAGTTATCACTT 57.114 29.630 0.00 0.00 33.41 3.16
4970 8873 7.331026 TCATTCGGACAGAGAACTTCAATTAT 58.669 34.615 0.00 0.00 0.00 1.28
5087 8991 2.633967 TGCTTTGGCCATCTTCATGTTT 59.366 40.909 6.09 0.00 37.74 2.83
5174 9079 1.952990 TGCTTTTCATCTCAACCGCAA 59.047 42.857 0.00 0.00 0.00 4.85
5212 9117 3.877559 TCATCTGATTCAGCGAAACCAT 58.122 40.909 8.89 0.00 0.00 3.55
5222 9127 1.672881 AGCGAAACCATAGCAATGAGC 59.327 47.619 0.00 0.00 46.19 4.26
5892 9797 8.393395 TGCGTTTTATGCAAGAAGATAATTTC 57.607 30.769 0.00 0.00 37.15 2.17
5935 9840 7.354025 TCAAATGAACATGTCATGCAATTTC 57.646 32.000 12.91 9.37 46.80 2.17
5937 9842 7.658167 TCAAATGAACATGTCATGCAATTTCTT 59.342 29.630 12.91 4.93 46.80 2.52
6129 10044 2.296190 CCTTGTTTGTGCCCTTACCTTC 59.704 50.000 0.00 0.00 0.00 3.46
6138 10053 4.162320 TGTGCCCTTACCTTCTATTCTCAG 59.838 45.833 0.00 0.00 0.00 3.35
6306 10237 7.174946 CACACCCTACTTTGTGTCTCAATTATT 59.825 37.037 0.00 0.00 43.52 1.40
6370 10301 2.968574 AGTAGTGGCTGGATACTGATGG 59.031 50.000 0.00 0.00 37.83 3.51
6431 10362 7.770897 ACCTCAAAAGTAATGCCAGATAGTTAG 59.229 37.037 0.00 0.00 0.00 2.34
7098 11029 0.182061 TGGATTGAGGATGCAGAGGC 59.818 55.000 0.00 0.00 41.68 4.70
7112 11043 2.754867 GCAGAGGCCTCCTAGTATCAGT 60.755 54.545 29.54 3.28 31.76 3.41
7140 11071 4.202020 TGTGGCTTAGTAGAGCAAGTATCG 60.202 45.833 0.00 0.00 44.49 2.92
7236 11167 2.086869 AGACCATTTTCATCGTGCCTG 58.913 47.619 0.00 0.00 0.00 4.85
7237 11168 0.527565 ACCATTTTCATCGTGCCTGC 59.472 50.000 0.00 0.00 0.00 4.85
7238 11169 0.813184 CCATTTTCATCGTGCCTGCT 59.187 50.000 0.00 0.00 0.00 4.24
7239 11170 1.202222 CCATTTTCATCGTGCCTGCTC 60.202 52.381 0.00 0.00 0.00 4.26
7240 11171 0.729116 ATTTTCATCGTGCCTGCTCG 59.271 50.000 7.23 7.23 0.00 5.03
7258 11190 0.108186 CGGTACTGGAGCAATGCTGA 60.108 55.000 14.48 0.00 39.88 4.26
7297 11229 4.183865 CACGTGGCTCTTTTATCAGATGA 58.816 43.478 7.95 0.00 0.00 2.92
7361 11293 2.761767 TGCCACGCTGTATTAGGTAGAA 59.238 45.455 0.00 0.00 0.00 2.10
7362 11294 3.196039 TGCCACGCTGTATTAGGTAGAAA 59.804 43.478 0.00 0.00 0.00 2.52
7477 11410 8.006298 TCGCATAAACATTCTTTGGGATAAAT 57.994 30.769 0.00 0.00 0.00 1.40
7496 11429 7.116805 GGATAAATCTGTCTTTGCAAAAACTGG 59.883 37.037 18.78 11.21 0.00 4.00
7510 11443 4.953940 AAAACTGGCAATGTGGTGTATT 57.046 36.364 0.00 0.00 0.00 1.89
7515 11448 3.081061 TGGCAATGTGGTGTATTCTGTC 58.919 45.455 0.00 0.00 0.00 3.51
7548 11482 2.450886 ACCATTCCTTTCCCTTCCAGTT 59.549 45.455 0.00 0.00 0.00 3.16
7573 11508 7.490962 AAGTCTGTCGTCATTTTTCAACATA 57.509 32.000 0.00 0.00 0.00 2.29
7575 11510 7.925993 AGTCTGTCGTCATTTTTCAACATAAA 58.074 30.769 0.00 0.00 0.00 1.40
7639 11576 9.355916 ACTCAGTACTCTATTAGAACATATGCA 57.644 33.333 1.58 0.00 0.00 3.96
7643 11580 9.355916 AGTACTCTATTAGAACATATGCACAGA 57.644 33.333 1.58 0.00 0.00 3.41
7717 11656 2.799126 TGGGGATACATGTTGGTCAC 57.201 50.000 2.30 1.21 39.74 3.67
7765 11704 2.744202 CGCATATAATGGAAGCCACTCC 59.256 50.000 0.00 0.00 35.80 3.85
7787 11726 0.249238 GTCTCTGACCATGCCTAGCG 60.249 60.000 0.00 0.00 0.00 4.26
7851 11790 2.151202 TCAATGAAGTTCCAGCGTTCC 58.849 47.619 0.00 0.00 0.00 3.62
7911 11859 6.371809 TTTATTTTGCGAGTAAGGCTATGG 57.628 37.500 0.00 0.00 0.00 2.74
7942 11890 2.496899 AACTCCCAATGACGCAAGAT 57.503 45.000 0.00 0.00 43.62 2.40
7947 11895 2.499693 TCCCAATGACGCAAGATGTCTA 59.500 45.455 0.00 0.00 43.62 2.59
7983 11931 9.202273 GATAATTACAAGCAGGTTATGAGAGAG 57.798 37.037 0.00 0.00 0.00 3.20
7984 11932 6.798427 ATTACAAGCAGGTTATGAGAGAGA 57.202 37.500 0.00 0.00 0.00 3.10
8050 11998 3.935203 CGAAGCTGACATGACCTTGTATT 59.065 43.478 0.00 0.00 0.00 1.89
8057 12005 5.003160 TGACATGACCTTGTATTGGTTGAG 58.997 41.667 0.00 0.00 38.03 3.02
8062 12010 3.486383 ACCTTGTATTGGTTGAGTGTGG 58.514 45.455 0.00 0.00 33.34 4.17
8069 12017 2.110213 GTTGAGTGTGGGTCGCCA 59.890 61.111 0.00 0.00 0.00 5.69
8088 12036 2.263077 CACTACCGAAGCTGACATGAC 58.737 52.381 0.00 0.00 0.00 3.06
8096 12044 4.047822 CGAAGCTGACATGACCTTCTATC 58.952 47.826 0.00 0.00 33.35 2.08
8127 12075 4.164221 TGGAAAATTGTGCCAAACCCTTTA 59.836 37.500 0.00 0.00 0.00 1.85
8129 12077 3.762407 AATTGTGCCAAACCCTTTACC 57.238 42.857 0.00 0.00 0.00 2.85
8141 12089 6.431543 CCAAACCCTTTACCAAACAAAACTTT 59.568 34.615 0.00 0.00 0.00 2.66
8159 12107 0.257328 TTCCCAGCTTCACAACACCA 59.743 50.000 0.00 0.00 0.00 4.17
8160 12108 0.179020 TCCCAGCTTCACAACACCAG 60.179 55.000 0.00 0.00 0.00 4.00
8193 12141 1.337703 CTCTGCGATGAAGAGGGAGAG 59.662 57.143 0.00 0.00 39.36 3.20
8222 13489 4.557205 ACCAAAGAACTATCTGTCACGTC 58.443 43.478 0.00 0.00 35.59 4.34
8239 13506 2.930826 GTCAAGGAGACACCAAAGGA 57.069 50.000 0.00 0.00 46.77 3.36
8319 13586 2.203337 GAGTGCCACTGGTTGCCA 60.203 61.111 0.00 0.00 0.00 4.92
8366 13633 6.430000 GCAACAAGAAGAAGACCATTACCTTA 59.570 38.462 0.00 0.00 0.00 2.69
8368 13635 7.554959 ACAAGAAGAAGACCATTACCTTAGA 57.445 36.000 0.00 0.00 0.00 2.10
8395 13662 4.464008 ACACAAAGACACATGAATCACCT 58.536 39.130 0.00 0.00 0.00 4.00
8413 13680 2.125512 GCTCAGATTCGGCACCGT 60.126 61.111 9.23 0.00 40.74 4.83
8422 13689 0.738412 TTCGGCACCGTAAGCTAAGC 60.738 55.000 9.23 0.00 40.74 3.09
8424 13691 1.153706 GGCACCGTAAGCTAAGCGA 60.154 57.895 6.14 0.00 0.00 4.93
8463 13730 0.032952 TTACTCGGTGCTGTGACCAC 59.967 55.000 0.00 0.00 35.50 4.16
8508 13775 2.024846 AGAGCCACAGACCTAGCTAAGA 60.025 50.000 0.00 0.00 35.23 2.10
8511 13778 2.432510 GCCACAGACCTAGCTAAGACAT 59.567 50.000 0.00 0.00 0.00 3.06
8529 13796 5.651530 AGACATTAGACTATTGGACACACG 58.348 41.667 8.76 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.665165 AGATCGATCTCAGCCAGACTT 58.335 47.619 22.32 0.00 32.26 3.01
1 2 2.363306 AGATCGATCTCAGCCAGACT 57.637 50.000 22.32 0.00 32.26 3.24
2 3 2.360483 TGAAGATCGATCTCAGCCAGAC 59.640 50.000 27.43 11.90 35.76 3.51
3 4 2.659428 TGAAGATCGATCTCAGCCAGA 58.341 47.619 27.43 4.87 35.76 3.86
4 5 3.181477 ACTTGAAGATCGATCTCAGCCAG 60.181 47.826 27.43 20.38 35.76 4.85
5 6 2.762887 ACTTGAAGATCGATCTCAGCCA 59.237 45.455 27.43 18.72 35.76 4.75
6 7 3.122297 CACTTGAAGATCGATCTCAGCC 58.878 50.000 27.43 16.63 35.76 4.85
7 8 2.539274 GCACTTGAAGATCGATCTCAGC 59.461 50.000 27.43 19.65 35.76 4.26
8 9 3.122297 GGCACTTGAAGATCGATCTCAG 58.878 50.000 27.43 23.03 35.76 3.35
9 10 2.762887 AGGCACTTGAAGATCGATCTCA 59.237 45.455 27.43 21.86 31.34 3.27
10 11 3.451141 AGGCACTTGAAGATCGATCTC 57.549 47.619 27.43 19.79 31.34 2.75
25 26 7.549615 ACTAACTTTTATTCCGATAAGGCAC 57.450 36.000 0.00 0.00 40.77 5.01
26 27 7.281549 GGAACTAACTTTTATTCCGATAAGGCA 59.718 37.037 0.00 0.00 40.77 4.75
27 28 7.637229 GGAACTAACTTTTATTCCGATAAGGC 58.363 38.462 0.00 0.00 40.77 4.35
35 36 7.388776 ACAGTAACCGGAACTAACTTTTATTCC 59.611 37.037 9.46 0.00 37.79 3.01
36 37 8.225777 CACAGTAACCGGAACTAACTTTTATTC 58.774 37.037 9.46 0.00 0.00 1.75
37 38 7.173735 CCACAGTAACCGGAACTAACTTTTATT 59.826 37.037 9.46 0.00 0.00 1.40
38 39 6.652062 CCACAGTAACCGGAACTAACTTTTAT 59.348 38.462 9.46 0.00 0.00 1.40
39 40 5.990996 CCACAGTAACCGGAACTAACTTTTA 59.009 40.000 9.46 0.00 0.00 1.52
40 41 4.818005 CCACAGTAACCGGAACTAACTTTT 59.182 41.667 9.46 0.00 0.00 2.27
41 42 4.383173 CCACAGTAACCGGAACTAACTTT 58.617 43.478 9.46 0.00 0.00 2.66
42 43 3.244318 CCCACAGTAACCGGAACTAACTT 60.244 47.826 9.46 0.00 0.00 2.66
43 44 2.301009 CCCACAGTAACCGGAACTAACT 59.699 50.000 9.46 0.26 0.00 2.24
44 45 2.299867 TCCCACAGTAACCGGAACTAAC 59.700 50.000 9.46 0.00 0.00 2.34
45 46 2.607499 TCCCACAGTAACCGGAACTAA 58.393 47.619 9.46 0.00 0.00 2.24
46 47 2.307496 TCCCACAGTAACCGGAACTA 57.693 50.000 9.46 0.00 0.00 2.24
47 48 1.346722 CTTCCCACAGTAACCGGAACT 59.653 52.381 9.46 8.65 31.20 3.01
48 49 1.345415 TCTTCCCACAGTAACCGGAAC 59.655 52.381 9.46 5.94 31.20 3.62
49 50 1.719529 TCTTCCCACAGTAACCGGAA 58.280 50.000 9.46 0.00 33.41 4.30
50 51 1.946984 ATCTTCCCACAGTAACCGGA 58.053 50.000 9.46 0.00 0.00 5.14
51 52 3.793559 CTTATCTTCCCACAGTAACCGG 58.206 50.000 0.00 0.00 0.00 5.28
52 53 3.195661 GCTTATCTTCCCACAGTAACCG 58.804 50.000 0.00 0.00 0.00 4.44
53 54 4.081087 TCTGCTTATCTTCCCACAGTAACC 60.081 45.833 0.00 0.00 0.00 2.85
54 55 5.086104 TCTGCTTATCTTCCCACAGTAAC 57.914 43.478 0.00 0.00 0.00 2.50
55 56 5.957771 ATCTGCTTATCTTCCCACAGTAA 57.042 39.130 0.00 0.00 0.00 2.24
56 57 5.957771 AATCTGCTTATCTTCCCACAGTA 57.042 39.130 0.00 0.00 0.00 2.74
57 58 4.851639 AATCTGCTTATCTTCCCACAGT 57.148 40.909 0.00 0.00 0.00 3.55
58 59 4.201990 GCAAATCTGCTTATCTTCCCACAG 60.202 45.833 0.00 0.00 45.74 3.66
59 60 3.696051 GCAAATCTGCTTATCTTCCCACA 59.304 43.478 0.00 0.00 45.74 4.17
60 61 4.298744 GCAAATCTGCTTATCTTCCCAC 57.701 45.455 0.00 0.00 45.74 4.61
72 73 2.998772 TGACTTTGTTCGCAAATCTGC 58.001 42.857 0.00 0.00 44.97 4.26
73 74 4.085415 GCTTTGACTTTGTTCGCAAATCTG 60.085 41.667 0.00 0.00 44.97 2.90
74 75 4.044426 GCTTTGACTTTGTTCGCAAATCT 58.956 39.130 0.00 0.00 44.97 2.40
75 76 4.044426 AGCTTTGACTTTGTTCGCAAATC 58.956 39.130 0.00 0.00 44.97 2.17
76 77 4.045636 AGCTTTGACTTTGTTCGCAAAT 57.954 36.364 0.00 0.00 44.97 2.32
77 78 3.502191 AGCTTTGACTTTGTTCGCAAA 57.498 38.095 0.00 0.00 44.02 3.68
78 79 3.502191 AAGCTTTGACTTTGTTCGCAA 57.498 38.095 0.00 0.00 34.91 4.85
82 83 4.578928 TGGACCTAAGCTTTGACTTTGTTC 59.421 41.667 3.20 0.00 0.00 3.18
90 91 8.956426 CATTTTTAGTATGGACCTAAGCTTTGA 58.044 33.333 3.20 0.00 0.00 2.69
160 161 5.127194 ACGAGACAAGCTATCAACATTCCTA 59.873 40.000 0.00 0.00 0.00 2.94
184 185 1.002142 AGTTCGTCGTCGTCATGTTGA 60.002 47.619 1.33 0.00 38.33 3.18
231 232 6.100714 GGGAAGTATACATGGGAAGGAAAGTA 59.899 42.308 5.50 0.00 0.00 2.24
234 235 5.043762 AGGGAAGTATACATGGGAAGGAAA 58.956 41.667 5.50 0.00 0.00 3.13
242 243 7.361457 TCTAGTGAAAGGGAAGTATACATGG 57.639 40.000 5.50 0.00 0.00 3.66
255 256 6.364706 GCGATGAACTCATATCTAGTGAAAGG 59.635 42.308 0.00 0.00 36.57 3.11
258 259 5.301805 TGGCGATGAACTCATATCTAGTGAA 59.698 40.000 0.00 0.00 36.57 3.18
279 280 6.206829 GGGTGTCTTCCTTATTAATATGTGGC 59.793 42.308 0.00 0.00 0.00 5.01
280 281 7.287061 TGGGTGTCTTCCTTATTAATATGTGG 58.713 38.462 0.00 0.42 0.00 4.17
286 287 9.686683 GCATATATGGGTGTCTTCCTTATTAAT 57.313 33.333 14.51 0.00 0.00 1.40
287 288 8.890472 AGCATATATGGGTGTCTTCCTTATTAA 58.110 33.333 14.51 0.00 0.00 1.40
333 345 1.798626 CTCAGGAGGGATGGATGTGA 58.201 55.000 0.00 0.00 0.00 3.58
341 353 3.066208 TCCAATAAGCTCAGGAGGGAT 57.934 47.619 0.00 0.00 0.00 3.85
342 354 2.568546 TCCAATAAGCTCAGGAGGGA 57.431 50.000 0.00 0.00 0.00 4.20
389 401 1.736126 CTGTGATCGTGCATGCTTTCT 59.264 47.619 20.33 0.85 0.00 2.52
393 405 0.248565 AGTCTGTGATCGTGCATGCT 59.751 50.000 20.33 0.00 0.00 3.79
394 406 0.649475 GAGTCTGTGATCGTGCATGC 59.351 55.000 11.82 11.82 0.00 4.06
395 407 1.284657 GGAGTCTGTGATCGTGCATG 58.715 55.000 0.00 0.00 0.00 4.06
399 411 1.000843 TGTTGGGAGTCTGTGATCGTG 59.999 52.381 0.00 0.00 0.00 4.35
404 416 1.142667 TGCATTGTTGGGAGTCTGTGA 59.857 47.619 0.00 0.00 0.00 3.58
422 434 4.908156 CCGATTTTTCATCGAATCTGATGC 59.092 41.667 5.81 0.00 44.32 3.91
425 437 5.466728 GGATCCGATTTTTCATCGAATCTGA 59.533 40.000 5.81 0.00 43.59 3.27
452 464 3.571590 AGAGAGTGAGCGATATTCCCTT 58.428 45.455 0.00 0.00 0.00 3.95
469 481 6.132658 AGTCCATATGAGCAACTCTAAGAGA 58.867 40.000 3.65 0.00 33.32 3.10
470 482 6.403866 AGTCCATATGAGCAACTCTAAGAG 57.596 41.667 3.65 0.00 35.52 2.85
475 488 4.551671 ACCTAGTCCATATGAGCAACTCT 58.448 43.478 3.65 0.00 0.00 3.24
479 492 4.321974 CGCATACCTAGTCCATATGAGCAA 60.322 45.833 3.65 0.00 0.00 3.91
492 505 2.576893 CGCACGCACGCATACCTAG 61.577 63.158 0.00 0.00 0.00 3.02
528 541 2.288025 TTACTCCCCACGACCAGCC 61.288 63.158 0.00 0.00 0.00 4.85
529 542 1.079336 GTTACTCCCCACGACCAGC 60.079 63.158 0.00 0.00 0.00 4.85
530 543 0.974383 AAGTTACTCCCCACGACCAG 59.026 55.000 0.00 0.00 0.00 4.00
531 544 2.307496 TAAGTTACTCCCCACGACCA 57.693 50.000 0.00 0.00 0.00 4.02
532 545 3.956848 AGTATAAGTTACTCCCCACGACC 59.043 47.826 0.00 0.00 0.00 4.79
533 546 5.825151 ACTAGTATAAGTTACTCCCCACGAC 59.175 44.000 0.00 0.00 0.00 4.34
534 547 5.824624 CACTAGTATAAGTTACTCCCCACGA 59.175 44.000 0.00 0.00 0.00 4.35
535 548 5.591877 ACACTAGTATAAGTTACTCCCCACG 59.408 44.000 0.00 0.00 0.00 4.94
536 549 6.604795 TGACACTAGTATAAGTTACTCCCCAC 59.395 42.308 0.00 0.00 0.00 4.61
537 550 6.734532 TGACACTAGTATAAGTTACTCCCCA 58.265 40.000 0.00 0.00 0.00 4.96
538 551 7.836479 ATGACACTAGTATAAGTTACTCCCC 57.164 40.000 0.00 0.00 0.00 4.81
539 552 9.347240 TGTATGACACTAGTATAAGTTACTCCC 57.653 37.037 0.00 0.00 0.00 4.30
546 559 9.309224 TGCCATATGTATGACACTAGTATAAGT 57.691 33.333 1.24 0.00 35.75 2.24
547 560 9.574458 GTGCCATATGTATGACACTAGTATAAG 57.426 37.037 10.89 0.00 41.80 1.73
556 569 5.923114 CAGACTAGTGCCATATGTATGACAC 59.077 44.000 0.00 10.35 44.25 3.67
557 570 5.833131 TCAGACTAGTGCCATATGTATGACA 59.167 40.000 0.00 0.00 35.75 3.58
558 571 6.015856 ACTCAGACTAGTGCCATATGTATGAC 60.016 42.308 0.00 0.00 35.75 3.06
559 572 6.071320 ACTCAGACTAGTGCCATATGTATGA 58.929 40.000 0.00 0.00 35.75 2.15
560 573 6.338214 ACTCAGACTAGTGCCATATGTATG 57.662 41.667 0.00 0.00 0.00 2.39
561 574 6.985653 AACTCAGACTAGTGCCATATGTAT 57.014 37.500 0.00 0.00 0.00 2.29
562 575 7.061054 AGTAACTCAGACTAGTGCCATATGTA 58.939 38.462 0.00 0.00 0.00 2.29
563 576 5.894393 AGTAACTCAGACTAGTGCCATATGT 59.106 40.000 0.00 0.00 0.00 2.29
564 577 6.398234 AGTAACTCAGACTAGTGCCATATG 57.602 41.667 0.00 0.00 0.00 1.78
565 578 6.490721 GGTAGTAACTCAGACTAGTGCCATAT 59.509 42.308 0.00 0.00 30.08 1.78
566 579 5.826737 GGTAGTAACTCAGACTAGTGCCATA 59.173 44.000 0.00 0.00 30.08 2.74
567 580 4.645588 GGTAGTAACTCAGACTAGTGCCAT 59.354 45.833 0.00 0.00 30.08 4.40
568 581 4.015084 GGTAGTAACTCAGACTAGTGCCA 58.985 47.826 0.00 0.00 30.08 4.92
569 582 4.271661 AGGTAGTAACTCAGACTAGTGCC 58.728 47.826 0.00 0.00 30.08 5.01
570 583 5.415077 TGAAGGTAGTAACTCAGACTAGTGC 59.585 44.000 0.00 0.00 30.08 4.40
571 584 7.633193 ATGAAGGTAGTAACTCAGACTAGTG 57.367 40.000 0.00 0.00 30.08 2.74
572 585 8.550585 ACTATGAAGGTAGTAACTCAGACTAGT 58.449 37.037 0.00 0.00 33.29 2.57
573 586 8.832521 CACTATGAAGGTAGTAACTCAGACTAG 58.167 40.741 0.00 0.00 33.29 2.57
574 587 7.282675 GCACTATGAAGGTAGTAACTCAGACTA 59.717 40.741 0.00 0.00 33.29 2.59
575 588 6.095720 GCACTATGAAGGTAGTAACTCAGACT 59.904 42.308 0.00 0.00 33.29 3.24
576 589 6.127703 TGCACTATGAAGGTAGTAACTCAGAC 60.128 42.308 0.00 0.00 33.29 3.51
577 590 5.949952 TGCACTATGAAGGTAGTAACTCAGA 59.050 40.000 0.00 0.00 33.29 3.27
578 591 6.208988 TGCACTATGAAGGTAGTAACTCAG 57.791 41.667 0.00 0.00 33.29 3.35
579 592 6.599356 TTGCACTATGAAGGTAGTAACTCA 57.401 37.500 0.00 0.00 33.29 3.41
580 593 7.097834 ACTTTGCACTATGAAGGTAGTAACTC 58.902 38.462 0.00 0.00 33.29 3.01
581 594 7.005709 ACTTTGCACTATGAAGGTAGTAACT 57.994 36.000 0.00 0.00 33.29 2.24
582 595 8.654215 GTTACTTTGCACTATGAAGGTAGTAAC 58.346 37.037 0.00 0.00 38.55 2.50
583 596 8.369424 TGTTACTTTGCACTATGAAGGTAGTAA 58.631 33.333 0.00 0.00 33.29 2.24
584 597 7.898918 TGTTACTTTGCACTATGAAGGTAGTA 58.101 34.615 0.00 0.00 33.29 1.82
585 598 6.765403 TGTTACTTTGCACTATGAAGGTAGT 58.235 36.000 0.00 0.00 35.34 2.73
586 599 7.849804 ATGTTACTTTGCACTATGAAGGTAG 57.150 36.000 0.00 0.00 0.00 3.18
587 600 8.537016 ACTATGTTACTTTGCACTATGAAGGTA 58.463 33.333 0.00 0.00 0.00 3.08
588 601 7.394816 ACTATGTTACTTTGCACTATGAAGGT 58.605 34.615 0.00 0.00 0.00 3.50
589 602 7.849804 ACTATGTTACTTTGCACTATGAAGG 57.150 36.000 0.00 0.00 0.00 3.46
590 603 9.587772 ACTACTATGTTACTTTGCACTATGAAG 57.412 33.333 0.00 0.00 0.00 3.02
595 608 9.017509 ACACTACTACTATGTTACTTTGCACTA 57.982 33.333 0.00 0.00 0.00 2.74
596 609 7.893658 ACACTACTACTATGTTACTTTGCACT 58.106 34.615 0.00 0.00 0.00 4.40
597 610 7.811236 TGACACTACTACTATGTTACTTTGCAC 59.189 37.037 0.00 0.00 0.00 4.57
598 611 7.888424 TGACACTACTACTATGTTACTTTGCA 58.112 34.615 0.00 0.00 0.00 4.08
599 612 8.928270 ATGACACTACTACTATGTTACTTTGC 57.072 34.615 0.00 0.00 0.00 3.68
606 619 9.908747 AGTCTTCTATGACACTACTACTATGTT 57.091 33.333 0.00 0.00 39.27 2.71
607 620 9.908747 AAGTCTTCTATGACACTACTACTATGT 57.091 33.333 0.00 0.00 39.27 2.29
611 624 9.469097 AATGAAGTCTTCTATGACACTACTACT 57.531 33.333 13.67 0.00 39.27 2.57
628 641 9.810545 GAGTCTACAAGCTAATTAATGAAGTCT 57.189 33.333 0.00 0.00 0.00 3.24
629 642 9.587772 TGAGTCTACAAGCTAATTAATGAAGTC 57.412 33.333 0.00 0.00 0.00 3.01
636 649 9.587772 GACAAGATGAGTCTACAAGCTAATTAA 57.412 33.333 0.00 0.00 33.30 1.40
637 650 8.972127 AGACAAGATGAGTCTACAAGCTAATTA 58.028 33.333 0.00 0.00 44.10 1.40
638 651 7.846066 AGACAAGATGAGTCTACAAGCTAATT 58.154 34.615 0.00 0.00 44.10 1.40
639 652 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
640 653 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
641 654 6.350528 CCAAGACAAGATGAGTCTACAAGCTA 60.351 42.308 0.00 0.00 45.11 3.32
642 655 5.477510 CAAGACAAGATGAGTCTACAAGCT 58.522 41.667 0.00 0.00 45.11 3.74
643 656 4.629200 CCAAGACAAGATGAGTCTACAAGC 59.371 45.833 0.00 0.00 45.11 4.01
644 657 6.030548 TCCAAGACAAGATGAGTCTACAAG 57.969 41.667 0.00 0.00 45.11 3.16
645 658 6.419484 TTCCAAGACAAGATGAGTCTACAA 57.581 37.500 0.00 0.00 45.11 2.41
646 659 6.419484 TTTCCAAGACAAGATGAGTCTACA 57.581 37.500 0.00 0.00 45.11 2.74
647 660 5.350091 GCTTTCCAAGACAAGATGAGTCTAC 59.650 44.000 0.00 0.00 45.11 2.59
648 661 5.482908 GCTTTCCAAGACAAGATGAGTCTA 58.517 41.667 0.00 0.00 45.11 2.59
650 663 3.124297 CGCTTTCCAAGACAAGATGAGTC 59.876 47.826 0.00 0.00 36.26 3.36
651 664 3.070018 CGCTTTCCAAGACAAGATGAGT 58.930 45.455 0.00 0.00 0.00 3.41
652 665 2.159599 GCGCTTTCCAAGACAAGATGAG 60.160 50.000 0.00 0.00 0.00 2.90
653 666 1.806542 GCGCTTTCCAAGACAAGATGA 59.193 47.619 0.00 0.00 0.00 2.92
654 667 1.808945 AGCGCTTTCCAAGACAAGATG 59.191 47.619 2.64 0.00 0.00 2.90
655 668 2.191128 AGCGCTTTCCAAGACAAGAT 57.809 45.000 2.64 0.00 0.00 2.40
656 669 2.831685 TAGCGCTTTCCAAGACAAGA 57.168 45.000 18.68 0.00 0.00 3.02
657 670 2.744202 ACATAGCGCTTTCCAAGACAAG 59.256 45.455 18.68 0.00 0.00 3.16
658 671 2.778299 ACATAGCGCTTTCCAAGACAA 58.222 42.857 18.68 0.00 0.00 3.18
659 672 2.472695 ACATAGCGCTTTCCAAGACA 57.527 45.000 18.68 0.00 0.00 3.41
660 673 3.682858 TGTAACATAGCGCTTTCCAAGAC 59.317 43.478 18.68 6.42 0.00 3.01
661 674 3.932710 CTGTAACATAGCGCTTTCCAAGA 59.067 43.478 18.68 0.00 0.00 3.02
662 675 3.684788 ACTGTAACATAGCGCTTTCCAAG 59.315 43.478 18.68 7.94 0.00 3.61
663 676 3.670625 ACTGTAACATAGCGCTTTCCAA 58.329 40.909 18.68 0.00 0.00 3.53
664 677 3.328382 ACTGTAACATAGCGCTTTCCA 57.672 42.857 18.68 0.00 0.00 3.53
665 678 4.628333 TGTTACTGTAACATAGCGCTTTCC 59.372 41.667 25.14 0.00 43.23 3.13
666 679 5.773239 TGTTACTGTAACATAGCGCTTTC 57.227 39.130 25.14 0.00 43.23 2.62
695 708 7.226128 GGCATGTAGTTAATAAGAGGTGGTAAC 59.774 40.741 0.00 0.00 0.00 2.50
696 709 7.092802 TGGCATGTAGTTAATAAGAGGTGGTAA 60.093 37.037 0.00 0.00 0.00 2.85
697 710 6.384595 TGGCATGTAGTTAATAAGAGGTGGTA 59.615 38.462 0.00 0.00 0.00 3.25
698 711 5.190925 TGGCATGTAGTTAATAAGAGGTGGT 59.809 40.000 0.00 0.00 0.00 4.16
699 712 5.527582 GTGGCATGTAGTTAATAAGAGGTGG 59.472 44.000 0.00 0.00 0.00 4.61
700 713 6.037172 GTGTGGCATGTAGTTAATAAGAGGTG 59.963 42.308 0.00 0.00 0.00 4.00
701 714 6.113411 GTGTGGCATGTAGTTAATAAGAGGT 58.887 40.000 0.00 0.00 0.00 3.85
702 715 6.112734 TGTGTGGCATGTAGTTAATAAGAGG 58.887 40.000 0.00 0.00 0.00 3.69
703 716 7.609760 TTGTGTGGCATGTAGTTAATAAGAG 57.390 36.000 0.00 0.00 0.00 2.85
704 717 6.093495 GCTTGTGTGGCATGTAGTTAATAAGA 59.907 38.462 0.00 0.00 0.00 2.10
705 718 6.128035 TGCTTGTGTGGCATGTAGTTAATAAG 60.128 38.462 0.00 0.00 34.56 1.73
706 719 5.707764 TGCTTGTGTGGCATGTAGTTAATAA 59.292 36.000 0.00 0.00 34.56 1.40
707 720 5.249420 TGCTTGTGTGGCATGTAGTTAATA 58.751 37.500 0.00 0.00 34.56 0.98
708 721 4.078537 TGCTTGTGTGGCATGTAGTTAAT 58.921 39.130 0.00 0.00 34.56 1.40
709 722 3.481453 TGCTTGTGTGGCATGTAGTTAA 58.519 40.909 0.00 0.00 34.56 2.01
710 723 3.133141 TGCTTGTGTGGCATGTAGTTA 57.867 42.857 0.00 0.00 34.56 2.24
711 724 1.979855 TGCTTGTGTGGCATGTAGTT 58.020 45.000 0.00 0.00 34.56 2.24
712 725 1.979855 TTGCTTGTGTGGCATGTAGT 58.020 45.000 0.00 0.00 39.54 2.73
713 726 3.367992 TTTTGCTTGTGTGGCATGTAG 57.632 42.857 0.00 0.00 39.54 2.74
714 727 3.808466 TTTTTGCTTGTGTGGCATGTA 57.192 38.095 0.00 0.00 39.54 2.29
715 728 2.687700 TTTTTGCTTGTGTGGCATGT 57.312 40.000 0.00 0.00 39.54 3.21
716 729 4.273969 AGAAATTTTTGCTTGTGTGGCATG 59.726 37.500 0.00 0.00 39.54 4.06
717 730 4.453751 AGAAATTTTTGCTTGTGTGGCAT 58.546 34.783 0.00 0.00 39.54 4.40
718 731 3.870419 GAGAAATTTTTGCTTGTGTGGCA 59.130 39.130 0.00 0.00 37.97 4.92
719 732 3.060339 CGAGAAATTTTTGCTTGTGTGGC 60.060 43.478 0.00 0.00 0.00 5.01
720 733 3.490526 CCGAGAAATTTTTGCTTGTGTGG 59.509 43.478 0.00 0.00 0.00 4.17
721 734 4.358851 TCCGAGAAATTTTTGCTTGTGTG 58.641 39.130 0.00 0.00 0.00 3.82
722 735 4.097892 ACTCCGAGAAATTTTTGCTTGTGT 59.902 37.500 1.33 0.00 0.00 3.72
723 736 4.442073 CACTCCGAGAAATTTTTGCTTGTG 59.558 41.667 1.33 0.00 0.00 3.33
724 737 4.610945 CACTCCGAGAAATTTTTGCTTGT 58.389 39.130 1.33 0.00 0.00 3.16
725 738 3.426525 GCACTCCGAGAAATTTTTGCTTG 59.573 43.478 1.33 0.00 0.00 4.01
726 739 3.642705 GCACTCCGAGAAATTTTTGCTT 58.357 40.909 1.33 0.00 0.00 3.91
727 740 2.350772 CGCACTCCGAGAAATTTTTGCT 60.351 45.455 1.33 0.00 40.02 3.91
728 741 1.978782 CGCACTCCGAGAAATTTTTGC 59.021 47.619 1.33 0.00 40.02 3.68
729 742 1.978782 GCGCACTCCGAGAAATTTTTG 59.021 47.619 0.30 0.00 40.02 2.44
730 743 1.880027 AGCGCACTCCGAGAAATTTTT 59.120 42.857 11.47 0.00 40.02 1.94
731 744 1.523758 AGCGCACTCCGAGAAATTTT 58.476 45.000 11.47 0.00 40.02 1.82
732 745 2.380084 TAGCGCACTCCGAGAAATTT 57.620 45.000 11.47 0.00 40.02 1.82
733 746 2.205074 CATAGCGCACTCCGAGAAATT 58.795 47.619 11.47 0.00 40.02 1.82
734 747 1.137086 ACATAGCGCACTCCGAGAAAT 59.863 47.619 11.47 0.00 40.02 2.17
735 748 0.530744 ACATAGCGCACTCCGAGAAA 59.469 50.000 11.47 0.00 40.02 2.52
736 749 0.530744 AACATAGCGCACTCCGAGAA 59.469 50.000 11.47 0.00 40.02 2.87
737 750 1.065102 GTAACATAGCGCACTCCGAGA 59.935 52.381 11.47 0.00 40.02 4.04
738 751 1.065701 AGTAACATAGCGCACTCCGAG 59.934 52.381 11.47 0.00 40.02 4.63
739 752 1.100510 AGTAACATAGCGCACTCCGA 58.899 50.000 11.47 0.00 40.02 4.55
740 753 1.588404 CAAGTAACATAGCGCACTCCG 59.412 52.381 11.47 0.00 40.75 4.63
741 754 1.327764 GCAAGTAACATAGCGCACTCC 59.672 52.381 11.47 0.00 0.00 3.85
742 755 2.271800 AGCAAGTAACATAGCGCACTC 58.728 47.619 11.47 0.00 0.00 3.51
743 756 2.386661 AGCAAGTAACATAGCGCACT 57.613 45.000 11.47 0.00 0.00 4.40
744 757 3.617263 ACTTAGCAAGTAACATAGCGCAC 59.383 43.478 11.47 0.00 40.69 5.34
745 758 3.857052 ACTTAGCAAGTAACATAGCGCA 58.143 40.909 11.47 0.00 40.69 6.09
746 759 4.859629 AACTTAGCAAGTAACATAGCGC 57.140 40.909 0.00 0.00 41.91 5.92
747 760 7.254017 GGAAGTAACTTAGCAAGTAACATAGCG 60.254 40.741 2.60 0.00 41.91 4.26
748 761 7.548075 TGGAAGTAACTTAGCAAGTAACATAGC 59.452 37.037 2.60 0.00 41.91 2.97
749 762 8.870879 GTGGAAGTAACTTAGCAAGTAACATAG 58.129 37.037 2.60 0.00 41.91 2.23
750 763 8.591072 AGTGGAAGTAACTTAGCAAGTAACATA 58.409 33.333 2.60 0.00 41.91 2.29
751 764 7.450903 AGTGGAAGTAACTTAGCAAGTAACAT 58.549 34.615 2.60 0.00 41.91 2.71
752 765 6.823497 AGTGGAAGTAACTTAGCAAGTAACA 58.177 36.000 2.60 0.00 41.91 2.41
753 766 8.870879 CATAGTGGAAGTAACTTAGCAAGTAAC 58.129 37.037 2.60 0.00 41.91 2.50
754 767 8.809066 TCATAGTGGAAGTAACTTAGCAAGTAA 58.191 33.333 2.60 0.00 41.91 2.24
755 768 8.248945 GTCATAGTGGAAGTAACTTAGCAAGTA 58.751 37.037 2.60 0.00 41.91 2.24
756 769 7.038941 AGTCATAGTGGAAGTAACTTAGCAAGT 60.039 37.037 0.00 0.00 45.46 3.16
757 770 7.324178 AGTCATAGTGGAAGTAACTTAGCAAG 58.676 38.462 0.00 0.00 0.00 4.01
758 771 7.241042 AGTCATAGTGGAAGTAACTTAGCAA 57.759 36.000 0.00 0.00 0.00 3.91
759 772 6.852420 AGTCATAGTGGAAGTAACTTAGCA 57.148 37.500 0.00 0.00 0.00 3.49
760 773 6.919115 GCTAGTCATAGTGGAAGTAACTTAGC 59.081 42.308 0.00 0.00 0.00 3.09
761 774 7.285858 AGGCTAGTCATAGTGGAAGTAACTTAG 59.714 40.741 0.00 0.00 0.00 2.18
762 775 7.124052 AGGCTAGTCATAGTGGAAGTAACTTA 58.876 38.462 0.00 0.00 0.00 2.24
763 776 5.958987 AGGCTAGTCATAGTGGAAGTAACTT 59.041 40.000 0.00 0.00 0.00 2.66
764 777 5.520751 AGGCTAGTCATAGTGGAAGTAACT 58.479 41.667 0.00 0.00 0.00 2.24
765 778 5.855740 AGGCTAGTCATAGTGGAAGTAAC 57.144 43.478 0.00 0.00 0.00 2.50
766 779 9.650714 TTATAAGGCTAGTCATAGTGGAAGTAA 57.349 33.333 0.00 0.00 0.00 2.24
767 780 9.650714 TTTATAAGGCTAGTCATAGTGGAAGTA 57.349 33.333 0.00 0.00 0.00 2.24
768 781 8.422566 GTTTATAAGGCTAGTCATAGTGGAAGT 58.577 37.037 0.00 0.00 0.00 3.01
769 782 7.595502 CGTTTATAAGGCTAGTCATAGTGGAAG 59.404 40.741 0.00 0.00 0.00 3.46
770 783 7.069085 ACGTTTATAAGGCTAGTCATAGTGGAA 59.931 37.037 0.00 0.00 0.00 3.53
771 784 6.548622 ACGTTTATAAGGCTAGTCATAGTGGA 59.451 38.462 0.00 0.00 0.00 4.02
772 785 6.746120 ACGTTTATAAGGCTAGTCATAGTGG 58.254 40.000 0.00 0.00 0.00 4.00
773 786 7.591795 CAGACGTTTATAAGGCTAGTCATAGTG 59.408 40.741 0.00 0.00 0.00 2.74
774 787 7.284944 ACAGACGTTTATAAGGCTAGTCATAGT 59.715 37.037 0.00 0.00 0.00 2.12
775 788 7.649973 ACAGACGTTTATAAGGCTAGTCATAG 58.350 38.462 0.00 0.00 0.00 2.23
776 789 7.578310 ACAGACGTTTATAAGGCTAGTCATA 57.422 36.000 0.00 0.00 0.00 2.15
777 790 6.466885 ACAGACGTTTATAAGGCTAGTCAT 57.533 37.500 0.00 0.00 0.00 3.06
778 791 5.909621 ACAGACGTTTATAAGGCTAGTCA 57.090 39.130 0.00 0.00 0.00 3.41
779 792 7.804129 CAGATACAGACGTTTATAAGGCTAGTC 59.196 40.741 0.00 0.00 0.00 2.59
780 793 7.284944 ACAGATACAGACGTTTATAAGGCTAGT 59.715 37.037 0.00 0.00 0.00 2.57
781 794 7.649973 ACAGATACAGACGTTTATAAGGCTAG 58.350 38.462 0.00 0.00 0.00 3.42
782 795 7.578310 ACAGATACAGACGTTTATAAGGCTA 57.422 36.000 0.00 0.00 0.00 3.93
783 796 6.466885 ACAGATACAGACGTTTATAAGGCT 57.533 37.500 0.00 0.00 0.00 4.58
784 797 7.064253 ACAAACAGATACAGACGTTTATAAGGC 59.936 37.037 0.00 0.00 30.71 4.35
785 798 8.380644 CACAAACAGATACAGACGTTTATAAGG 58.619 37.037 0.00 0.00 30.71 2.69
938 959 4.722700 TTCTGCGGGGCTTGCCTC 62.723 66.667 11.71 6.52 0.00 4.70
1038 1059 0.478507 GAGAGAGAGAGAGGGAGGGG 59.521 65.000 0.00 0.00 0.00 4.79
1045 1066 2.158608 GGAGGGAAGGAGAGAGAGAGAG 60.159 59.091 0.00 0.00 0.00 3.20
1046 1067 1.850345 GGAGGGAAGGAGAGAGAGAGA 59.150 57.143 0.00 0.00 0.00 3.10
1075 1096 1.969208 GAAGATAGGGTTACGGGGAGG 59.031 57.143 0.00 0.00 0.00 4.30
1076 1097 1.969208 GGAAGATAGGGTTACGGGGAG 59.031 57.143 0.00 0.00 0.00 4.30
1077 1098 1.577242 AGGAAGATAGGGTTACGGGGA 59.423 52.381 0.00 0.00 0.00 4.81
1078 1099 1.969208 GAGGAAGATAGGGTTACGGGG 59.031 57.143 0.00 0.00 0.00 5.73
1079 1100 2.364647 GTGAGGAAGATAGGGTTACGGG 59.635 54.545 0.00 0.00 0.00 5.28
1080 1101 2.364647 GGTGAGGAAGATAGGGTTACGG 59.635 54.545 0.00 0.00 0.00 4.02
1081 1102 3.028850 TGGTGAGGAAGATAGGGTTACG 58.971 50.000 0.00 0.00 0.00 3.18
1249 1270 2.027073 GCATGTCAGCAACCGACGA 61.027 57.895 0.00 0.00 36.11 4.20
1278 1299 3.016736 CAGAGGACAGAGAAGGAGAGAC 58.983 54.545 0.00 0.00 0.00 3.36
1508 1531 2.440501 CGCAGCATACCATTTTCGAAC 58.559 47.619 0.00 0.00 0.00 3.95
1544 1567 2.955660 CAGGTAGCAAAACCAGGTCAAA 59.044 45.455 0.00 0.00 42.40 2.69
1559 1582 1.222567 AAGGCCCCCAATACAGGTAG 58.777 55.000 0.00 0.00 0.00 3.18
1563 1586 5.692115 AAAAATTAAGGCCCCCAATACAG 57.308 39.130 0.00 0.00 0.00 2.74
1588 1611 5.722021 AGTACCATACACATGATATCGCA 57.278 39.130 0.00 0.00 33.67 5.10
1589 1612 8.703604 ATAAAGTACCATACACATGATATCGC 57.296 34.615 0.00 0.00 33.67 4.58
1647 1670 7.569408 CGCCATACAATACAATAAGCACTACAG 60.569 40.741 0.00 0.00 0.00 2.74
1703 1726 2.666508 CACTACGGACAGATTTTGGTCG 59.333 50.000 0.00 0.00 34.87 4.79
1706 1729 2.699954 AGCACTACGGACAGATTTTGG 58.300 47.619 0.00 0.00 0.00 3.28
1711 1734 5.339008 TTCAATAAGCACTACGGACAGAT 57.661 39.130 0.00 0.00 0.00 2.90
1716 1739 7.551262 ACAATGTAATTCAATAAGCACTACGGA 59.449 33.333 0.00 0.00 31.22 4.69
1718 1741 8.175069 ACACAATGTAATTCAATAAGCACTACG 58.825 33.333 0.00 0.00 31.22 3.51
1875 1900 7.692908 TTTCAAAGTTAGATTTTGGAAAGCG 57.307 32.000 0.00 0.00 36.44 4.68
2102 2127 9.750783 TTATATTGTCTAGGTACTCCATCCTAC 57.249 37.037 0.00 0.00 41.75 3.18
2126 2151 9.394767 AGCATGTTCACACAAACTATATCATTA 57.605 29.630 0.00 0.00 36.16 1.90
2136 2400 3.004734 AGCCTAAGCATGTTCACACAAAC 59.995 43.478 0.00 0.00 43.56 2.93
2279 2543 7.391833 AGAAAGGTTCTCTGTCACAATTAATCC 59.608 37.037 0.00 0.00 34.07 3.01
2363 2628 4.762289 AGGTTGTGCCCAAAAATGTTTA 57.238 36.364 0.00 0.00 38.26 2.01
2364 2629 3.643199 AGGTTGTGCCCAAAAATGTTT 57.357 38.095 0.00 0.00 38.26 2.83
2402 2667 5.441500 TCAGTGGACCTAACAAATTTGTGA 58.558 37.500 23.93 16.04 41.31 3.58
2445 2710 3.132289 CCAATAGCACGGAGGACTTCTAA 59.868 47.826 0.00 0.00 0.00 2.10
2446 2711 2.693591 CCAATAGCACGGAGGACTTCTA 59.306 50.000 0.00 0.00 0.00 2.10
2448 2713 1.941325 CCAATAGCACGGAGGACTTC 58.059 55.000 0.00 0.00 0.00 3.01
2483 2748 2.939103 CTCCAATGAAGGCTTCGTAAGG 59.061 50.000 21.57 23.24 38.47 2.69
2636 2904 4.534500 ACCATCAATAGGTCCAACACAGTA 59.466 41.667 0.00 0.00 32.90 2.74
2836 3104 1.068541 GTTTTTCTGCCCGCTCGAAAT 60.069 47.619 5.86 0.00 0.00 2.17
2938 3206 0.037326 CGCTTAGGACAACTGCCAGA 60.037 55.000 0.00 0.00 0.00 3.86
3008 3276 7.922811 TGTAATCACATGTGTTTTGCATACAAA 59.077 29.630 24.63 1.60 43.97 2.83
3062 3330 2.228822 CGAAATGCTAACAAAGTGCCCT 59.771 45.455 0.00 0.00 0.00 5.19
3066 3334 4.496895 GCTATGCGAAATGCTAACAAAGTG 59.503 41.667 0.00 0.00 46.63 3.16
3111 3379 8.165239 TGATTATGTTTAACAGCACTTTCACT 57.835 30.769 3.63 0.00 0.00 3.41
3529 3797 7.597288 AACCCTTATTTGAAGTAAAACAGCT 57.403 32.000 0.00 0.00 0.00 4.24
3597 7493 5.573282 CGTAAAGTAGCTGATATTCGGATGG 59.427 44.000 0.00 0.00 0.00 3.51
3670 7566 9.507329 AGTAGTCACATCAAAGAAATACATGTT 57.493 29.630 2.30 0.00 0.00 2.71
3765 7661 1.901833 GGCAATTGATCCACAGGGTTT 59.098 47.619 10.34 0.00 34.93 3.27
3845 7741 1.399727 GCACGGCAATGTACAGTTGAC 60.400 52.381 17.05 14.40 0.00 3.18
4089 7985 2.756840 TGTGAGAATGCTGAGTGAGG 57.243 50.000 0.00 0.00 0.00 3.86
4161 8057 9.661954 ATCTAGTTAGGATGAAGGACATTAGAA 57.338 33.333 0.00 0.00 39.56 2.10
4208 8104 9.035607 CCAGTTACTGATAAAAGCAGTATAGTG 57.964 37.037 14.66 2.97 45.30 2.74
4315 8211 3.849645 GCGCTGTTGGTATCATGCATTAC 60.850 47.826 0.00 0.00 0.00 1.89
4345 8241 5.277058 GCTCTCGAATCCATTGTGTTCATAC 60.277 44.000 0.00 0.00 0.00 2.39
4505 8401 6.421377 GTTTTTCAAAACTCTTGGCACATT 57.579 33.333 7.74 0.00 43.68 2.71
4629 8531 2.623889 ACGAGCACTGACAACTAAGACT 59.376 45.455 0.00 0.00 0.00 3.24
4970 8873 7.930865 CCAATTTTGGTTCCATTTCAAGAAGTA 59.069 33.333 0.95 0.00 43.43 2.24
5003 8906 0.541392 TGCCATGCCATCGAAGTACT 59.459 50.000 0.00 0.00 0.00 2.73
5212 9117 3.349927 AGTCTGCAAATGCTCATTGCTA 58.650 40.909 17.97 7.71 43.37 3.49
5892 9797 7.820386 TCATTTGATGAAAGGAAATGTCCAATG 59.180 33.333 4.28 3.09 40.58 2.82
5935 9840 9.956720 GGATTTCATGATAAGAAATGTACCAAG 57.043 33.333 0.00 0.00 43.60 3.61
5937 9842 7.255104 GCGGATTTCATGATAAGAAATGTACCA 60.255 37.037 0.00 0.00 43.60 3.25
5981 9886 6.064060 CCCAACATACACCACAGATCATTAT 58.936 40.000 0.00 0.00 0.00 1.28
6129 10044 6.122277 TGGCCCAATTTACTTCTGAGAATAG 58.878 40.000 0.00 0.00 0.00 1.73
6138 10053 5.639082 CAGTGAAAATGGCCCAATTTACTTC 59.361 40.000 0.00 0.00 0.00 3.01
6370 10301 7.580165 GCATTAACAAATTGCGATTAAGAATGC 59.420 33.333 20.96 20.96 37.99 3.56
6431 10362 8.658609 ACAGCAATTTATTAAATGCATGACAAC 58.341 29.630 0.00 0.00 31.65 3.32
7098 11029 5.509840 GCCACATACAACTGATACTAGGAGG 60.510 48.000 0.00 0.00 0.00 4.30
7112 11043 5.046591 ACTTGCTCTACTAAGCCACATACAA 60.047 40.000 0.00 0.00 41.77 2.41
7237 11168 0.176680 AGCATTGCTCCAGTACCGAG 59.823 55.000 5.03 3.66 30.62 4.63
7238 11169 0.108186 CAGCATTGCTCCAGTACCGA 60.108 55.000 8.54 0.00 36.40 4.69
7239 11170 0.108186 TCAGCATTGCTCCAGTACCG 60.108 55.000 8.54 0.00 36.40 4.02
7240 11171 1.945394 CATCAGCATTGCTCCAGTACC 59.055 52.381 8.54 0.00 36.40 3.34
7258 11190 1.207089 CGTGGGTACATCACAGACCAT 59.793 52.381 15.63 0.00 34.73 3.55
7297 11229 7.453141 AAAGAAGTATATACTCCAAGGCCTT 57.547 36.000 13.78 13.78 34.99 4.35
7361 11293 0.681175 GAAGCCCATGCCACTTGTTT 59.319 50.000 0.00 0.00 38.69 2.83
7362 11294 0.178953 AGAAGCCCATGCCACTTGTT 60.179 50.000 0.00 0.00 38.69 2.83
7418 11351 4.131649 TGACACGGAATAATCGGTTCAT 57.868 40.909 0.00 0.00 37.04 2.57
7477 11410 2.495270 TGCCAGTTTTTGCAAAGACAGA 59.505 40.909 28.39 10.94 33.87 3.41
7496 11429 4.002982 TCTGACAGAATACACCACATTGC 58.997 43.478 1.64 0.00 0.00 3.56
7502 11435 5.571285 ACTAGACTCTGACAGAATACACCA 58.429 41.667 6.61 0.00 0.00 4.17
7510 11443 5.652891 GGAATGGTTACTAGACTCTGACAGA 59.347 44.000 4.78 4.78 0.00 3.41
7515 11448 6.342111 GGAAAGGAATGGTTACTAGACTCTG 58.658 44.000 0.00 0.00 0.00 3.35
7548 11482 6.912203 TGTTGAAAAATGACGACAGACTTA 57.088 33.333 0.00 0.00 0.00 2.24
7573 11508 9.341078 ACAGGAAATTTATGCAAAACAATCTTT 57.659 25.926 0.00 0.00 0.00 2.52
7575 11510 8.370182 AGACAGGAAATTTATGCAAAACAATCT 58.630 29.630 0.00 0.00 0.00 2.40
7596 11531 5.837437 ACTGAGTGACTAGTGAAAAGACAG 58.163 41.667 0.00 3.57 0.00 3.51
7663 11600 7.103641 CCAAGTATTTAGTAGCCTCTTGACAA 58.896 38.462 0.00 0.00 34.62 3.18
7717 11656 0.947244 GCCCTTGGTGCTGAATATCG 59.053 55.000 0.00 0.00 0.00 2.92
7765 11704 1.336440 CTAGGCATGGTCAGAGACTCG 59.664 57.143 0.00 0.00 32.47 4.18
7801 11740 9.267084 GAAATGTTAAAAAGGGAATACAAAGCA 57.733 29.630 0.00 0.00 0.00 3.91
7877 11819 9.959775 TTACTCGCAAAATAAAACAAAAGTTTG 57.040 25.926 2.22 2.22 43.62 2.93
7911 11859 9.394477 GCGTCATTGGGAGTTTTAAATATAATC 57.606 33.333 0.00 0.00 0.00 1.75
8050 11998 2.110213 GCGACCCACACTCAACCA 59.890 61.111 0.00 0.00 0.00 3.67
8062 12010 2.508663 GCTTCGGTAGTGGCGACC 60.509 66.667 0.00 0.00 0.00 4.79
8069 12017 1.204941 GGTCATGTCAGCTTCGGTAGT 59.795 52.381 0.00 0.00 0.00 2.73
8088 12036 5.682943 TTTTCCAACAACACGATAGAAGG 57.317 39.130 0.00 0.00 41.38 3.46
8096 12044 2.283884 GGCACAATTTTCCAACAACACG 59.716 45.455 0.00 0.00 0.00 4.49
8127 12075 2.837591 AGCTGGGAAAGTTTTGTTTGGT 59.162 40.909 0.00 0.00 0.00 3.67
8129 12077 4.329801 GTGAAGCTGGGAAAGTTTTGTTTG 59.670 41.667 0.00 0.00 28.01 2.93
8141 12089 0.179020 CTGGTGTTGTGAAGCTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
8193 12141 5.831997 ACAGATAGTTCTTTGGTTGTTTGC 58.168 37.500 0.00 0.00 0.00 3.68
8319 13586 1.682854 CTTTGTGATGGTGGTGTTGCT 59.317 47.619 0.00 0.00 0.00 3.91
8366 13633 4.269183 TCATGTGTCTTTGTGTTGGTTCT 58.731 39.130 0.00 0.00 0.00 3.01
8368 13635 5.126869 TGATTCATGTGTCTTTGTGTTGGTT 59.873 36.000 0.00 0.00 0.00 3.67
8395 13662 1.600511 TACGGTGCCGAATCTGAGCA 61.601 55.000 18.16 0.00 42.83 4.26
8413 13680 4.093472 AGATCTCTCCTCGCTTAGCTTA 57.907 45.455 1.76 0.00 0.00 3.09
8422 13689 4.204012 AGTTTCCACTAGATCTCTCCTCG 58.796 47.826 0.00 0.00 0.00 4.63
8424 13691 6.737608 AGTAAGTTTCCACTAGATCTCTCCT 58.262 40.000 0.00 0.00 30.68 3.69
8463 13730 1.374758 GCTTCGACTCCTGTGGTGG 60.375 63.158 0.00 0.00 0.00 4.61
8471 13738 1.933247 CTCTTCATGGCTTCGACTCC 58.067 55.000 0.00 0.00 0.00 3.85
8508 13775 4.181578 GCGTGTGTCCAATAGTCTAATGT 58.818 43.478 0.00 0.00 0.00 2.71
8511 13778 2.488937 TCGCGTGTGTCCAATAGTCTAA 59.511 45.455 5.77 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.