Multiple sequence alignment - TraesCS6A01G264000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G264000 chr6A 100.000 2708 0 0 1 2708 486975400 486978107 0.000000e+00 5001.0
1 TraesCS6A01G264000 chr6D 97.050 1017 18 3 823 1836 354837527 354836520 0.000000e+00 1701.0
2 TraesCS6A01G264000 chr6D 90.465 409 23 5 394 802 354838035 354837643 2.390000e-145 525.0
3 TraesCS6A01G264000 chr6D 94.253 87 3 2 1835 1921 354836478 354836394 6.080000e-27 132.0
4 TraesCS6A01G264000 chr6B 96.585 1025 23 2 823 1836 523206281 523207304 0.000000e+00 1688.0
5 TraesCS6A01G264000 chr6B 94.643 672 30 5 2042 2708 526739811 526740481 0.000000e+00 1037.0
6 TraesCS6A01G264000 chr6B 94.083 676 34 6 2038 2708 704376442 704377116 0.000000e+00 1022.0
7 TraesCS6A01G264000 chr6B 83.624 287 29 8 446 730 523205647 523205917 1.240000e-63 254.0
8 TraesCS6A01G264000 chr6B 94.783 115 5 1 1917 2031 523207507 523207620 7.700000e-41 178.0
9 TraesCS6A01G264000 chr6B 100.000 30 0 0 1868 1897 523207476 523207505 3.770000e-04 56.5
10 TraesCS6A01G264000 chrUn 94.126 681 32 6 2034 2708 197211824 197211146 0.000000e+00 1029.0
11 TraesCS6A01G264000 chr3A 94.214 674 32 4 2042 2708 712731163 712730490 0.000000e+00 1022.0
12 TraesCS6A01G264000 chr3A 89.844 384 37 2 5 387 17447406 17447788 2.420000e-135 492.0
13 TraesCS6A01G264000 chr5D 93.577 685 38 6 2030 2708 168014295 168013611 0.000000e+00 1016.0
14 TraesCS6A01G264000 chr7A 94.419 663 32 4 2048 2708 310983596 310984255 0.000000e+00 1014.0
15 TraesCS6A01G264000 chr7A 93.567 684 35 6 2031 2707 510570043 510570724 0.000000e+00 1011.0
16 TraesCS6A01G264000 chr7A 99.225 387 3 0 1 387 646843992 646843606 0.000000e+00 699.0
17 TraesCS6A01G264000 chr7D 93.908 673 36 5 2041 2708 174792919 174792247 0.000000e+00 1011.0
18 TraesCS6A01G264000 chr1B 93.431 685 35 9 2027 2708 583162668 583161991 0.000000e+00 1007.0
19 TraesCS6A01G264000 chr4A 99.485 388 2 0 1 388 584730255 584730642 0.000000e+00 706.0
20 TraesCS6A01G264000 chr4A 99.227 388 3 0 1 388 584684667 584684280 0.000000e+00 701.0
21 TraesCS6A01G264000 chr2B 97.423 388 9 1 1 387 797196850 797197237 0.000000e+00 660.0
22 TraesCS6A01G264000 chr7B 91.495 388 29 3 1 387 726720661 726720277 5.130000e-147 531.0
23 TraesCS6A01G264000 chr7B 89.583 384 37 3 5 387 719646417 719646036 4.050000e-133 484.0
24 TraesCS6A01G264000 chr2A 89.844 384 37 2 5 387 724821571 724821953 2.420000e-135 492.0
25 TraesCS6A01G264000 chr5A 89.378 386 39 2 5 389 11557770 11557386 4.050000e-133 484.0
26 TraesCS6A01G264000 chr3D 95.238 42 2 0 823 864 23840337 23840378 1.740000e-07 67.6
27 TraesCS6A01G264000 chr3B 95.122 41 2 0 824 864 41508310 41508270 6.260000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G264000 chr6A 486975400 486978107 2707 False 5001.000 5001 100.000000 1 2708 1 chr6A.!!$F1 2707
1 TraesCS6A01G264000 chr6D 354836394 354838035 1641 True 786.000 1701 93.922667 394 1921 3 chr6D.!!$R1 1527
2 TraesCS6A01G264000 chr6B 526739811 526740481 670 False 1037.000 1037 94.643000 2042 2708 1 chr6B.!!$F1 666
3 TraesCS6A01G264000 chr6B 704376442 704377116 674 False 1022.000 1022 94.083000 2038 2708 1 chr6B.!!$F2 670
4 TraesCS6A01G264000 chr6B 523205647 523207620 1973 False 544.125 1688 93.748000 446 2031 4 chr6B.!!$F3 1585
5 TraesCS6A01G264000 chrUn 197211146 197211824 678 True 1029.000 1029 94.126000 2034 2708 1 chrUn.!!$R1 674
6 TraesCS6A01G264000 chr3A 712730490 712731163 673 True 1022.000 1022 94.214000 2042 2708 1 chr3A.!!$R1 666
7 TraesCS6A01G264000 chr5D 168013611 168014295 684 True 1016.000 1016 93.577000 2030 2708 1 chr5D.!!$R1 678
8 TraesCS6A01G264000 chr7A 310983596 310984255 659 False 1014.000 1014 94.419000 2048 2708 1 chr7A.!!$F1 660
9 TraesCS6A01G264000 chr7A 510570043 510570724 681 False 1011.000 1011 93.567000 2031 2707 1 chr7A.!!$F2 676
10 TraesCS6A01G264000 chr7D 174792247 174792919 672 True 1011.000 1011 93.908000 2041 2708 1 chr7D.!!$R1 667
11 TraesCS6A01G264000 chr1B 583161991 583162668 677 True 1007.000 1007 93.431000 2027 2708 1 chr1B.!!$R1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 591 0.251341 AGCCATGTTGTCAACCCTCC 60.251 55.0 13.13 0.1 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 2119 1.282817 TACATTCAAACGCGATCCGG 58.717 50.0 15.93 0.0 42.52 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.193250 TGCGAGATAACCTTAATGTTAACTTC 57.807 34.615 12.44 9.35 34.97 3.01
26 27 7.820386 TGCGAGATAACCTTAATGTTAACTTCA 59.180 33.333 12.44 11.03 34.97 3.02
27 28 8.662141 GCGAGATAACCTTAATGTTAACTTCAA 58.338 33.333 12.44 0.00 34.97 2.69
78 79 9.866655 AATATTAGCTCTGTTTTGGATAATCCA 57.133 29.630 0.00 0.00 46.61 3.41
101 102 9.733556 TCCAGTTTGACATATACATTTAGTTGT 57.266 29.630 0.00 0.00 0.00 3.32
102 103 9.773328 CCAGTTTGACATATACATTTAGTTGTG 57.227 33.333 0.00 0.00 0.00 3.33
103 104 9.277565 CAGTTTGACATATACATTTAGTTGTGC 57.722 33.333 0.00 0.00 0.00 4.57
104 105 8.175069 AGTTTGACATATACATTTAGTTGTGCG 58.825 33.333 0.00 0.00 0.00 5.34
105 106 7.603963 TTGACATATACATTTAGTTGTGCGT 57.396 32.000 0.00 0.00 0.00 5.24
106 107 7.229228 TGACATATACATTTAGTTGTGCGTC 57.771 36.000 0.00 0.00 0.00 5.19
107 108 6.814146 TGACATATACATTTAGTTGTGCGTCA 59.186 34.615 0.00 0.00 0.00 4.35
108 109 7.332182 TGACATATACATTTAGTTGTGCGTCAA 59.668 33.333 0.00 0.00 29.62 3.18
109 110 7.684670 ACATATACATTTAGTTGTGCGTCAAG 58.315 34.615 0.00 0.00 36.66 3.02
110 111 3.896648 ACATTTAGTTGTGCGTCAAGG 57.103 42.857 0.00 0.00 36.66 3.61
111 112 2.552315 ACATTTAGTTGTGCGTCAAGGG 59.448 45.455 0.00 0.00 36.66 3.95
112 113 1.600023 TTTAGTTGTGCGTCAAGGGG 58.400 50.000 0.00 0.00 36.66 4.79
113 114 0.759959 TTAGTTGTGCGTCAAGGGGA 59.240 50.000 0.00 0.00 36.66 4.81
114 115 0.981183 TAGTTGTGCGTCAAGGGGAT 59.019 50.000 0.00 0.00 36.66 3.85
115 116 0.606401 AGTTGTGCGTCAAGGGGATG 60.606 55.000 0.00 0.00 36.66 3.51
116 117 0.605319 GTTGTGCGTCAAGGGGATGA 60.605 55.000 0.00 0.00 36.66 2.92
117 118 0.605319 TTGTGCGTCAAGGGGATGAC 60.605 55.000 0.00 0.00 44.96 3.06
118 119 1.296715 GTGCGTCAAGGGGATGACT 59.703 57.895 5.96 0.00 45.98 3.41
119 120 0.321653 GTGCGTCAAGGGGATGACTT 60.322 55.000 5.96 0.00 45.98 3.01
120 121 1.066430 GTGCGTCAAGGGGATGACTTA 60.066 52.381 5.96 0.00 45.98 2.24
121 122 1.626321 TGCGTCAAGGGGATGACTTAA 59.374 47.619 5.96 0.00 45.98 1.85
122 123 2.238646 TGCGTCAAGGGGATGACTTAAT 59.761 45.455 5.96 0.00 45.98 1.40
123 124 3.279434 GCGTCAAGGGGATGACTTAATT 58.721 45.455 5.96 0.00 45.98 1.40
124 125 3.694566 GCGTCAAGGGGATGACTTAATTT 59.305 43.478 5.96 0.00 45.98 1.82
125 126 4.157840 GCGTCAAGGGGATGACTTAATTTT 59.842 41.667 5.96 0.00 45.98 1.82
126 127 5.676331 GCGTCAAGGGGATGACTTAATTTTC 60.676 44.000 5.96 0.00 45.98 2.29
127 128 5.414454 CGTCAAGGGGATGACTTAATTTTCA 59.586 40.000 5.96 0.00 45.98 2.69
128 129 6.621613 GTCAAGGGGATGACTTAATTTTCAC 58.378 40.000 0.38 0.00 44.98 3.18
129 130 6.208599 GTCAAGGGGATGACTTAATTTTCACA 59.791 38.462 0.38 0.00 44.98 3.58
130 131 6.953520 TCAAGGGGATGACTTAATTTTCACAT 59.046 34.615 0.00 0.00 0.00 3.21
131 132 8.112822 TCAAGGGGATGACTTAATTTTCACATA 58.887 33.333 0.00 0.00 0.00 2.29
132 133 8.917088 CAAGGGGATGACTTAATTTTCACATAT 58.083 33.333 0.00 0.00 0.00 1.78
159 160 9.582431 AATCAAATATTGACATGCTTGAAAGAG 57.418 29.630 6.60 0.00 43.48 2.85
160 161 8.114331 TCAAATATTGACATGCTTGAAAGAGT 57.886 30.769 6.60 0.00 34.08 3.24
161 162 8.579006 TCAAATATTGACATGCTTGAAAGAGTT 58.421 29.630 6.60 1.33 34.08 3.01
162 163 8.644619 CAAATATTGACATGCTTGAAAGAGTTG 58.355 33.333 6.60 9.15 0.00 3.16
163 164 5.779529 ATTGACATGCTTGAAAGAGTTGT 57.220 34.783 6.60 0.00 0.00 3.32
164 165 4.818534 TGACATGCTTGAAAGAGTTGTC 57.181 40.909 6.60 10.84 34.91 3.18
165 166 4.198530 TGACATGCTTGAAAGAGTTGTCA 58.801 39.130 6.60 14.13 38.44 3.58
166 167 4.823442 TGACATGCTTGAAAGAGTTGTCAT 59.177 37.500 6.60 0.00 37.18 3.06
167 168 5.300034 TGACATGCTTGAAAGAGTTGTCATT 59.700 36.000 6.60 0.00 37.18 2.57
168 169 6.486320 TGACATGCTTGAAAGAGTTGTCATTA 59.514 34.615 6.60 0.47 37.18 1.90
169 170 7.013178 TGACATGCTTGAAAGAGTTGTCATTAA 59.987 33.333 6.60 0.00 37.18 1.40
170 171 7.141363 ACATGCTTGAAAGAGTTGTCATTAAC 58.859 34.615 6.60 0.00 0.00 2.01
171 172 6.691754 TGCTTGAAAGAGTTGTCATTAACA 57.308 33.333 0.00 0.00 35.59 2.41
172 173 7.275888 TGCTTGAAAGAGTTGTCATTAACAT 57.724 32.000 0.00 0.00 37.82 2.71
173 174 7.715657 TGCTTGAAAGAGTTGTCATTAACATT 58.284 30.769 0.00 0.00 37.82 2.71
174 175 7.862372 TGCTTGAAAGAGTTGTCATTAACATTC 59.138 33.333 0.00 0.00 37.82 2.67
175 176 8.078596 GCTTGAAAGAGTTGTCATTAACATTCT 58.921 33.333 0.00 0.00 37.82 2.40
176 177 9.390795 CTTGAAAGAGTTGTCATTAACATTCTG 57.609 33.333 0.00 0.00 37.82 3.02
177 178 7.362662 TGAAAGAGTTGTCATTAACATTCTGC 58.637 34.615 0.00 0.00 37.82 4.26
178 179 5.886960 AGAGTTGTCATTAACATTCTGCC 57.113 39.130 0.00 0.00 37.82 4.85
179 180 4.393062 AGAGTTGTCATTAACATTCTGCCG 59.607 41.667 0.00 0.00 37.82 5.69
180 181 4.323417 AGTTGTCATTAACATTCTGCCGA 58.677 39.130 0.00 0.00 37.82 5.54
181 182 4.943705 AGTTGTCATTAACATTCTGCCGAT 59.056 37.500 0.00 0.00 37.82 4.18
182 183 5.415701 AGTTGTCATTAACATTCTGCCGATT 59.584 36.000 0.00 0.00 37.82 3.34
183 184 5.895636 TGTCATTAACATTCTGCCGATTT 57.104 34.783 0.00 0.00 31.20 2.17
184 185 5.639757 TGTCATTAACATTCTGCCGATTTG 58.360 37.500 0.00 0.00 31.20 2.32
185 186 5.036737 GTCATTAACATTCTGCCGATTTGG 58.963 41.667 0.00 0.00 42.50 3.28
186 187 4.946772 TCATTAACATTCTGCCGATTTGGA 59.053 37.500 0.00 0.00 42.00 3.53
187 188 5.417266 TCATTAACATTCTGCCGATTTGGAA 59.583 36.000 0.00 0.00 42.00 3.53
188 189 5.713792 TTAACATTCTGCCGATTTGGAAA 57.286 34.783 0.00 0.00 42.00 3.13
189 190 4.806640 AACATTCTGCCGATTTGGAAAT 57.193 36.364 0.00 0.00 42.00 2.17
190 191 5.913137 AACATTCTGCCGATTTGGAAATA 57.087 34.783 0.00 0.00 42.00 1.40
191 192 5.913137 ACATTCTGCCGATTTGGAAATAA 57.087 34.783 0.00 0.00 42.00 1.40
192 193 6.279513 ACATTCTGCCGATTTGGAAATAAA 57.720 33.333 0.00 0.00 42.00 1.40
193 194 6.877236 ACATTCTGCCGATTTGGAAATAAAT 58.123 32.000 0.00 0.00 42.00 1.40
194 195 6.757947 ACATTCTGCCGATTTGGAAATAAATG 59.242 34.615 0.00 0.00 42.00 2.32
195 196 6.522625 TTCTGCCGATTTGGAAATAAATGA 57.477 33.333 0.00 0.00 42.00 2.57
196 197 6.135290 TCTGCCGATTTGGAAATAAATGAG 57.865 37.500 0.00 0.00 42.00 2.90
197 198 5.885352 TCTGCCGATTTGGAAATAAATGAGA 59.115 36.000 0.00 0.00 42.00 3.27
198 199 6.038603 TCTGCCGATTTGGAAATAAATGAGAG 59.961 38.462 0.00 0.00 42.00 3.20
199 200 5.885352 TGCCGATTTGGAAATAAATGAGAGA 59.115 36.000 0.00 0.00 42.00 3.10
200 201 6.183360 TGCCGATTTGGAAATAAATGAGAGAC 60.183 38.462 0.00 0.00 42.00 3.36
201 202 6.183360 GCCGATTTGGAAATAAATGAGAGACA 60.183 38.462 0.00 0.00 42.00 3.41
202 203 7.469181 GCCGATTTGGAAATAAATGAGAGACAT 60.469 37.037 0.00 0.00 42.00 3.06
203 204 7.859377 CCGATTTGGAAATAAATGAGAGACATG 59.141 37.037 0.00 0.00 42.00 3.21
204 205 8.615211 CGATTTGGAAATAAATGAGAGACATGA 58.385 33.333 0.00 0.00 39.39 3.07
205 206 9.947669 GATTTGGAAATAAATGAGAGACATGAG 57.052 33.333 0.00 0.00 39.39 2.90
206 207 7.870509 TTGGAAATAAATGAGAGACATGAGG 57.129 36.000 0.00 0.00 39.39 3.86
207 208 6.962182 TGGAAATAAATGAGAGACATGAGGT 58.038 36.000 0.00 0.00 39.39 3.85
208 209 7.405292 TGGAAATAAATGAGAGACATGAGGTT 58.595 34.615 0.00 0.00 39.39 3.50
209 210 7.337689 TGGAAATAAATGAGAGACATGAGGTTG 59.662 37.037 0.00 0.00 39.39 3.77
210 211 7.337942 GGAAATAAATGAGAGACATGAGGTTGT 59.662 37.037 0.00 0.00 39.39 3.32
211 212 8.641498 AAATAAATGAGAGACATGAGGTTGTT 57.359 30.769 0.00 0.00 39.39 2.83
212 213 9.739276 AAATAAATGAGAGACATGAGGTTGTTA 57.261 29.630 0.00 0.00 39.39 2.41
213 214 8.723942 ATAAATGAGAGACATGAGGTTGTTAC 57.276 34.615 0.00 0.00 39.39 2.50
214 215 6.365970 AATGAGAGACATGAGGTTGTTACT 57.634 37.500 0.00 0.00 39.39 2.24
215 216 7.482169 AATGAGAGACATGAGGTTGTTACTA 57.518 36.000 0.00 0.00 39.39 1.82
216 217 7.667575 ATGAGAGACATGAGGTTGTTACTAT 57.332 36.000 0.00 0.00 37.87 2.12
217 218 8.768501 ATGAGAGACATGAGGTTGTTACTATA 57.231 34.615 0.00 0.00 37.87 1.31
218 219 8.589701 TGAGAGACATGAGGTTGTTACTATAA 57.410 34.615 0.00 0.00 0.00 0.98
219 220 9.031537 TGAGAGACATGAGGTTGTTACTATAAA 57.968 33.333 0.00 0.00 0.00 1.40
220 221 9.871238 GAGAGACATGAGGTTGTTACTATAAAA 57.129 33.333 0.00 0.00 0.00 1.52
221 222 9.877178 AGAGACATGAGGTTGTTACTATAAAAG 57.123 33.333 0.00 0.00 0.00 2.27
222 223 9.654663 GAGACATGAGGTTGTTACTATAAAAGT 57.345 33.333 0.00 0.00 42.62 2.66
223 224 9.436957 AGACATGAGGTTGTTACTATAAAAGTG 57.563 33.333 0.00 0.00 39.39 3.16
224 225 9.431887 GACATGAGGTTGTTACTATAAAAGTGA 57.568 33.333 0.00 0.00 39.39 3.41
225 226 9.959721 ACATGAGGTTGTTACTATAAAAGTGAT 57.040 29.630 0.00 0.00 39.39 3.06
227 228 9.959721 ATGAGGTTGTTACTATAAAAGTGATGT 57.040 29.630 0.00 0.00 39.39 3.06
228 229 9.787435 TGAGGTTGTTACTATAAAAGTGATGTT 57.213 29.630 0.00 0.00 39.39 2.71
257 258 8.616799 ATCTATCTATTTCTAGGGGGTGATTC 57.383 38.462 0.00 0.00 0.00 2.52
258 259 5.746990 ATCTATTTCTAGGGGGTGATTCG 57.253 43.478 0.00 0.00 0.00 3.34
259 260 4.553678 TCTATTTCTAGGGGGTGATTCGT 58.446 43.478 0.00 0.00 0.00 3.85
260 261 3.560636 ATTTCTAGGGGGTGATTCGTG 57.439 47.619 0.00 0.00 0.00 4.35
261 262 2.241281 TTCTAGGGGGTGATTCGTGA 57.759 50.000 0.00 0.00 0.00 4.35
262 263 2.241281 TCTAGGGGGTGATTCGTGAA 57.759 50.000 0.00 0.00 0.00 3.18
263 264 2.542550 TCTAGGGGGTGATTCGTGAAA 58.457 47.619 0.00 0.00 0.00 2.69
264 265 3.112263 TCTAGGGGGTGATTCGTGAAAT 58.888 45.455 0.00 0.00 0.00 2.17
265 266 2.128771 AGGGGGTGATTCGTGAAATG 57.871 50.000 0.00 0.00 0.00 2.32
266 267 1.354368 AGGGGGTGATTCGTGAAATGT 59.646 47.619 0.00 0.00 0.00 2.71
267 268 2.574369 AGGGGGTGATTCGTGAAATGTA 59.426 45.455 0.00 0.00 0.00 2.29
268 269 2.681344 GGGGGTGATTCGTGAAATGTAC 59.319 50.000 0.00 0.00 0.00 2.90
269 270 3.340034 GGGGTGATTCGTGAAATGTACA 58.660 45.455 0.00 0.00 0.00 2.90
270 271 3.126343 GGGGTGATTCGTGAAATGTACAC 59.874 47.826 0.00 0.00 35.26 2.90
271 272 4.000988 GGGTGATTCGTGAAATGTACACT 58.999 43.478 0.00 0.00 36.29 3.55
272 273 4.454504 GGGTGATTCGTGAAATGTACACTT 59.545 41.667 0.00 0.00 36.29 3.16
273 274 5.640357 GGGTGATTCGTGAAATGTACACTTA 59.360 40.000 0.00 0.00 36.29 2.24
274 275 6.148150 GGGTGATTCGTGAAATGTACACTTAA 59.852 38.462 0.00 0.00 36.29 1.85
275 276 7.234384 GGTGATTCGTGAAATGTACACTTAAG 58.766 38.462 0.00 0.00 36.29 1.85
276 277 7.095355 GGTGATTCGTGAAATGTACACTTAAGT 60.095 37.037 1.12 1.12 36.29 2.24
287 288 2.100605 CACTTAAGTGGGAGCAGTCC 57.899 55.000 25.19 0.00 42.10 3.85
295 296 3.403558 GGAGCAGTCCCCTCCACC 61.404 72.222 2.70 0.00 46.51 4.61
296 297 2.607750 GAGCAGTCCCCTCCACCA 60.608 66.667 0.00 0.00 0.00 4.17
297 298 1.997874 GAGCAGTCCCCTCCACCAT 60.998 63.158 0.00 0.00 0.00 3.55
298 299 0.691078 GAGCAGTCCCCTCCACCATA 60.691 60.000 0.00 0.00 0.00 2.74
299 300 0.253160 AGCAGTCCCCTCCACCATAA 60.253 55.000 0.00 0.00 0.00 1.90
300 301 0.846693 GCAGTCCCCTCCACCATAAT 59.153 55.000 0.00 0.00 0.00 1.28
301 302 1.202818 GCAGTCCCCTCCACCATAATC 60.203 57.143 0.00 0.00 0.00 1.75
302 303 2.412591 CAGTCCCCTCCACCATAATCT 58.587 52.381 0.00 0.00 0.00 2.40
303 304 2.105477 CAGTCCCCTCCACCATAATCTG 59.895 54.545 0.00 0.00 0.00 2.90
304 305 2.127708 GTCCCCTCCACCATAATCTGT 58.872 52.381 0.00 0.00 0.00 3.41
305 306 2.126882 TCCCCTCCACCATAATCTGTG 58.873 52.381 0.00 0.00 0.00 3.66
306 307 1.477558 CCCCTCCACCATAATCTGTGC 60.478 57.143 0.00 0.00 0.00 4.57
307 308 1.477558 CCCTCCACCATAATCTGTGCC 60.478 57.143 0.00 0.00 0.00 5.01
308 309 1.212688 CCTCCACCATAATCTGTGCCA 59.787 52.381 0.00 0.00 0.00 4.92
309 310 2.158564 CCTCCACCATAATCTGTGCCAT 60.159 50.000 0.00 0.00 0.00 4.40
310 311 3.559069 CTCCACCATAATCTGTGCCATT 58.441 45.455 0.00 0.00 0.00 3.16
311 312 3.554934 TCCACCATAATCTGTGCCATTC 58.445 45.455 0.00 0.00 0.00 2.67
312 313 3.053768 TCCACCATAATCTGTGCCATTCA 60.054 43.478 0.00 0.00 0.00 2.57
313 314 3.893200 CCACCATAATCTGTGCCATTCAT 59.107 43.478 0.00 0.00 0.00 2.57
314 315 4.022589 CCACCATAATCTGTGCCATTCATC 60.023 45.833 0.00 0.00 0.00 2.92
315 316 4.825634 CACCATAATCTGTGCCATTCATCT 59.174 41.667 0.00 0.00 0.00 2.90
316 317 5.048921 CACCATAATCTGTGCCATTCATCTC 60.049 44.000 0.00 0.00 0.00 2.75
317 318 4.458295 CCATAATCTGTGCCATTCATCTCC 59.542 45.833 0.00 0.00 0.00 3.71
318 319 2.653234 ATCTGTGCCATTCATCTCCC 57.347 50.000 0.00 0.00 0.00 4.30
319 320 1.288188 TCTGTGCCATTCATCTCCCA 58.712 50.000 0.00 0.00 0.00 4.37
320 321 1.848388 TCTGTGCCATTCATCTCCCAT 59.152 47.619 0.00 0.00 0.00 4.00
321 322 2.242965 TCTGTGCCATTCATCTCCCATT 59.757 45.455 0.00 0.00 0.00 3.16
322 323 2.621998 CTGTGCCATTCATCTCCCATTC 59.378 50.000 0.00 0.00 0.00 2.67
323 324 2.025131 TGTGCCATTCATCTCCCATTCA 60.025 45.455 0.00 0.00 0.00 2.57
324 325 3.025978 GTGCCATTCATCTCCCATTCAA 58.974 45.455 0.00 0.00 0.00 2.69
325 326 3.640029 GTGCCATTCATCTCCCATTCAAT 59.360 43.478 0.00 0.00 0.00 2.57
326 327 3.639561 TGCCATTCATCTCCCATTCAATG 59.360 43.478 0.00 0.00 0.00 2.82
338 339 4.994907 CCATTCAATGGCTCAGATTTCA 57.005 40.909 2.63 0.00 44.70 2.69
339 340 5.531122 CCATTCAATGGCTCAGATTTCAT 57.469 39.130 2.63 0.00 44.70 2.57
340 341 5.914033 CCATTCAATGGCTCAGATTTCATT 58.086 37.500 2.63 0.00 44.70 2.57
341 342 6.346096 CCATTCAATGGCTCAGATTTCATTT 58.654 36.000 2.63 0.00 44.70 2.32
342 343 6.821665 CCATTCAATGGCTCAGATTTCATTTT 59.178 34.615 2.63 0.00 44.70 1.82
343 344 7.335924 CCATTCAATGGCTCAGATTTCATTTTT 59.664 33.333 2.63 0.00 44.70 1.94
344 345 7.894376 TTCAATGGCTCAGATTTCATTTTTC 57.106 32.000 0.00 0.00 0.00 2.29
345 346 7.235935 TCAATGGCTCAGATTTCATTTTTCT 57.764 32.000 0.00 0.00 0.00 2.52
346 347 8.352137 TCAATGGCTCAGATTTCATTTTTCTA 57.648 30.769 0.00 0.00 0.00 2.10
347 348 8.974238 TCAATGGCTCAGATTTCATTTTTCTAT 58.026 29.630 0.00 0.00 0.00 1.98
348 349 9.595823 CAATGGCTCAGATTTCATTTTTCTATT 57.404 29.630 0.00 0.00 0.00 1.73
349 350 9.813446 AATGGCTCAGATTTCATTTTTCTATTC 57.187 29.630 0.00 0.00 0.00 1.75
350 351 8.585471 TGGCTCAGATTTCATTTTTCTATTCT 57.415 30.769 0.00 0.00 0.00 2.40
351 352 9.028284 TGGCTCAGATTTCATTTTTCTATTCTT 57.972 29.630 0.00 0.00 0.00 2.52
352 353 9.866798 GGCTCAGATTTCATTTTTCTATTCTTT 57.133 29.630 0.00 0.00 0.00 2.52
362 363 9.630098 TCATTTTTCTATTCTTTCACATGAAGC 57.370 29.630 0.00 0.00 35.21 3.86
363 364 9.635520 CATTTTTCTATTCTTTCACATGAAGCT 57.364 29.630 0.00 0.00 35.21 3.74
364 365 9.852091 ATTTTTCTATTCTTTCACATGAAGCTC 57.148 29.630 0.00 0.00 35.21 4.09
365 366 7.984422 TTTCTATTCTTTCACATGAAGCTCA 57.016 32.000 0.00 0.00 35.21 4.26
366 367 7.606858 TTCTATTCTTTCACATGAAGCTCAG 57.393 36.000 0.00 0.00 35.21 3.35
367 368 6.939622 TCTATTCTTTCACATGAAGCTCAGA 58.060 36.000 0.00 0.00 35.21 3.27
368 369 7.563020 TCTATTCTTTCACATGAAGCTCAGAT 58.437 34.615 0.00 0.00 35.21 2.90
369 370 8.045507 TCTATTCTTTCACATGAAGCTCAGATT 58.954 33.333 0.00 0.00 35.21 2.40
370 371 6.492007 TTCTTTCACATGAAGCTCAGATTC 57.508 37.500 0.00 0.00 35.21 2.52
371 372 5.802465 TCTTTCACATGAAGCTCAGATTCT 58.198 37.500 3.92 0.00 35.21 2.40
372 373 6.939622 TCTTTCACATGAAGCTCAGATTCTA 58.060 36.000 3.92 0.00 35.21 2.10
373 374 7.563020 TCTTTCACATGAAGCTCAGATTCTAT 58.437 34.615 3.92 0.00 35.21 1.98
374 375 8.699130 TCTTTCACATGAAGCTCAGATTCTATA 58.301 33.333 3.92 0.00 35.21 1.31
375 376 8.654230 TTTCACATGAAGCTCAGATTCTATAC 57.346 34.615 3.92 0.00 35.21 1.47
376 377 7.594351 TCACATGAAGCTCAGATTCTATACT 57.406 36.000 3.92 0.00 0.00 2.12
377 378 8.697507 TCACATGAAGCTCAGATTCTATACTA 57.302 34.615 3.92 0.00 0.00 1.82
378 379 8.791675 TCACATGAAGCTCAGATTCTATACTAG 58.208 37.037 3.92 0.00 0.00 2.57
379 380 8.575589 CACATGAAGCTCAGATTCTATACTAGT 58.424 37.037 3.92 0.00 0.00 2.57
380 381 9.142014 ACATGAAGCTCAGATTCTATACTAGTT 57.858 33.333 3.92 0.00 0.00 2.24
381 382 9.409312 CATGAAGCTCAGATTCTATACTAGTTG 57.591 37.037 3.92 0.00 0.00 3.16
382 383 7.429633 TGAAGCTCAGATTCTATACTAGTTGC 58.570 38.462 3.92 0.00 0.00 4.17
383 384 7.286546 TGAAGCTCAGATTCTATACTAGTTGCT 59.713 37.037 3.92 0.00 0.00 3.91
384 385 7.214467 AGCTCAGATTCTATACTAGTTGCTC 57.786 40.000 0.00 0.00 0.00 4.26
385 386 6.208599 AGCTCAGATTCTATACTAGTTGCTCC 59.791 42.308 0.00 0.00 0.00 4.70
386 387 6.571537 GCTCAGATTCTATACTAGTTGCTCCC 60.572 46.154 0.00 0.00 0.00 4.30
387 388 6.615617 TCAGATTCTATACTAGTTGCTCCCT 58.384 40.000 0.00 0.00 0.00 4.20
388 389 6.491745 TCAGATTCTATACTAGTTGCTCCCTG 59.508 42.308 0.00 1.90 0.00 4.45
389 390 6.266558 CAGATTCTATACTAGTTGCTCCCTGT 59.733 42.308 0.00 0.00 0.00 4.00
390 391 7.448777 CAGATTCTATACTAGTTGCTCCCTGTA 59.551 40.741 0.00 0.00 0.00 2.74
391 392 7.668052 AGATTCTATACTAGTTGCTCCCTGTAG 59.332 40.741 0.00 0.00 0.00 2.74
392 393 5.632118 TCTATACTAGTTGCTCCCTGTAGG 58.368 45.833 0.00 0.00 0.00 3.18
510 511 1.064017 TGGCCATGTTGTTATCCCTCC 60.064 52.381 0.00 0.00 0.00 4.30
543 544 9.667607 TTCTCTCCAAATCTAAATCCTAGAGAT 57.332 33.333 0.00 0.00 37.41 2.75
564 565 2.852449 TGAGATTTTCTAGGCACCCCAT 59.148 45.455 0.00 0.00 0.00 4.00
567 568 2.990740 TTTTCTAGGCACCCCATGTT 57.009 45.000 0.00 0.00 0.00 2.71
572 573 0.327924 TAGGCACCCCATGTTGTCAG 59.672 55.000 0.00 0.00 0.00 3.51
575 576 1.228521 CACCCCATGTTGTCAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
577 578 0.612732 ACCCCATGTTGTCAGCCATG 60.613 55.000 7.32 7.32 38.51 3.66
578 579 0.612732 CCCCATGTTGTCAGCCATGT 60.613 55.000 11.47 0.00 37.37 3.21
580 581 1.067425 CCCATGTTGTCAGCCATGTTG 60.067 52.381 11.47 0.00 37.37 3.33
581 582 1.614903 CCATGTTGTCAGCCATGTTGT 59.385 47.619 11.47 0.00 37.37 3.32
582 583 2.352030 CCATGTTGTCAGCCATGTTGTC 60.352 50.000 11.47 0.00 37.37 3.18
583 584 2.049888 TGTTGTCAGCCATGTTGTCA 57.950 45.000 0.00 0.00 0.00 3.58
584 585 2.373224 TGTTGTCAGCCATGTTGTCAA 58.627 42.857 0.00 0.00 0.00 3.18
585 586 2.098934 TGTTGTCAGCCATGTTGTCAAC 59.901 45.455 20.29 20.29 35.68 3.18
586 587 1.317613 TGTCAGCCATGTTGTCAACC 58.682 50.000 13.13 0.00 0.00 3.77
587 588 0.598065 GTCAGCCATGTTGTCAACCC 59.402 55.000 13.13 0.00 0.00 4.11
588 589 0.478072 TCAGCCATGTTGTCAACCCT 59.522 50.000 13.13 2.00 0.00 4.34
589 590 0.883833 CAGCCATGTTGTCAACCCTC 59.116 55.000 13.13 0.55 0.00 4.30
590 591 0.251341 AGCCATGTTGTCAACCCTCC 60.251 55.000 13.13 0.10 0.00 4.30
591 592 0.251341 GCCATGTTGTCAACCCTCCT 60.251 55.000 13.13 0.00 0.00 3.69
592 593 1.823250 GCCATGTTGTCAACCCTCCTT 60.823 52.381 13.13 0.00 0.00 3.36
593 594 2.162681 CCATGTTGTCAACCCTCCTTC 58.837 52.381 13.13 0.00 0.00 3.46
594 595 1.806542 CATGTTGTCAACCCTCCTTCG 59.193 52.381 13.13 0.00 0.00 3.79
595 596 0.534203 TGTTGTCAACCCTCCTTCGC 60.534 55.000 13.13 0.00 0.00 4.70
639 642 0.535335 TTCTATGTCGGTGTGGGAGC 59.465 55.000 0.00 0.00 0.00 4.70
661 664 1.061735 TGGTGATGCCCCTATCTACCA 60.062 52.381 0.00 0.00 36.65 3.25
674 677 5.192927 CCTATCTACCAGATGGAGCTCTAG 58.807 50.000 14.64 5.65 35.48 2.43
707 710 1.378762 GGGCTTCAGTAGGGTTGCA 59.621 57.895 0.00 0.00 0.00 4.08
710 713 0.602905 GCTTCAGTAGGGTTGCACGT 60.603 55.000 0.00 0.00 0.00 4.49
711 714 1.148310 CTTCAGTAGGGTTGCACGTG 58.852 55.000 12.28 12.28 0.00 4.49
714 717 3.053896 GTAGGGTTGCACGTGGGC 61.054 66.667 18.88 3.97 0.00 5.36
746 749 0.814010 GCGGCGATGTTCCTTGGTAT 60.814 55.000 12.98 0.00 0.00 2.73
752 755 4.452455 GGCGATGTTCCTTGGTATGAATAG 59.548 45.833 0.00 0.00 0.00 1.73
781 784 1.829222 ACATTAGACCACCGTTCCGAT 59.171 47.619 0.00 0.00 0.00 4.18
796 1090 4.442706 GTTCCGATGGTACTGTCATGATT 58.557 43.478 0.00 0.00 0.00 2.57
801 1095 6.041523 TCCGATGGTACTGTCATGATTGATTA 59.958 38.462 0.00 0.00 33.56 1.75
802 1096 6.705825 CCGATGGTACTGTCATGATTGATTAA 59.294 38.462 0.00 0.00 33.56 1.40
878 1186 0.871057 AGCGAAGAAAAGAGCAGCAC 59.129 50.000 0.00 0.00 0.00 4.40
1089 1400 0.882927 CCGTCCACCACATGTTCGTT 60.883 55.000 0.00 0.00 0.00 3.85
1095 1406 0.934496 ACCACATGTTCGTTGTCGTG 59.066 50.000 0.00 0.00 38.33 4.35
1145 1456 3.699894 CACGCTCCAGGGCAGTCT 61.700 66.667 0.00 0.00 0.00 3.24
1795 2117 5.193930 TCTGGAACTAAGAGATCCCTACTCA 59.806 44.000 0.00 0.00 36.44 3.41
1797 2119 5.657302 TGGAACTAAGAGATCCCTACTCAAC 59.343 44.000 0.00 0.00 36.44 3.18
1824 2146 4.892655 TCGCGTTTGAATGTATGATGAAC 58.107 39.130 5.77 0.00 0.00 3.18
1921 2383 8.707938 ACTAAGTGTAAAACGTGTTCTAAGTT 57.292 30.769 0.00 0.00 32.15 2.66
1922 2384 8.811378 ACTAAGTGTAAAACGTGTTCTAAGTTC 58.189 33.333 0.00 0.00 30.44 3.01
1923 2385 6.264909 AGTGTAAAACGTGTTCTAAGTTCG 57.735 37.500 0.00 0.00 30.44 3.95
1926 2388 3.457610 AAACGTGTTCTAAGTTCGGGA 57.542 42.857 0.00 0.00 30.44 5.14
1929 2391 3.795877 ACGTGTTCTAAGTTCGGGAAAA 58.204 40.909 0.00 0.00 0.00 2.29
2019 2481 3.259064 ACAAGGACCGAAACGATGTATG 58.741 45.455 0.00 0.00 0.00 2.39
2129 2591 5.610398 TGCCACGTATGAATAGATGACATT 58.390 37.500 0.00 0.00 0.00 2.71
2257 2719 6.177610 TCAAAACTAGACCCCATGTTGATAC 58.822 40.000 0.00 0.00 0.00 2.24
2485 2955 4.717233 TTTAGTTTATGGTGCATGGCAG 57.283 40.909 0.00 0.00 40.08 4.85
2618 3090 3.949132 TGTGCAATAGACATGGCAACTA 58.051 40.909 0.00 0.00 42.87 2.24
2621 3093 5.163632 TGTGCAATAGACATGGCAACTATTG 60.164 40.000 27.91 27.91 42.87 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.820386 TGAAGTTAACATTAAGGTTATCTCGCA 59.180 33.333 18.76 16.82 34.06 5.10
1 2 8.193250 TGAAGTTAACATTAAGGTTATCTCGC 57.807 34.615 18.76 15.18 34.06 5.03
52 53 9.866655 TGGATTATCCAAAACAGAGCTAATATT 57.133 29.630 12.08 0.00 45.00 1.28
75 76 9.733556 ACAACTAAATGTATATGTCAAACTGGA 57.266 29.630 0.00 0.00 0.00 3.86
76 77 9.773328 CACAACTAAATGTATATGTCAAACTGG 57.227 33.333 0.00 0.00 30.84 4.00
77 78 9.277565 GCACAACTAAATGTATATGTCAAACTG 57.722 33.333 0.00 0.00 30.84 3.16
78 79 8.175069 CGCACAACTAAATGTATATGTCAAACT 58.825 33.333 0.00 0.00 30.84 2.66
79 80 7.960738 ACGCACAACTAAATGTATATGTCAAAC 59.039 33.333 0.00 0.00 30.84 2.93
80 81 8.035165 ACGCACAACTAAATGTATATGTCAAA 57.965 30.769 0.00 0.00 30.84 2.69
81 82 7.332182 TGACGCACAACTAAATGTATATGTCAA 59.668 33.333 0.00 0.00 31.84 3.18
82 83 6.814146 TGACGCACAACTAAATGTATATGTCA 59.186 34.615 0.00 0.00 32.08 3.58
83 84 7.229228 TGACGCACAACTAAATGTATATGTC 57.771 36.000 0.00 0.00 30.84 3.06
84 85 7.201609 CCTTGACGCACAACTAAATGTATATGT 60.202 37.037 0.00 0.00 34.56 2.29
85 86 7.125755 CCTTGACGCACAACTAAATGTATATG 58.874 38.462 0.00 0.00 34.56 1.78
86 87 6.260050 CCCTTGACGCACAACTAAATGTATAT 59.740 38.462 0.00 0.00 34.56 0.86
87 88 5.583061 CCCTTGACGCACAACTAAATGTATA 59.417 40.000 0.00 0.00 34.56 1.47
88 89 4.394920 CCCTTGACGCACAACTAAATGTAT 59.605 41.667 0.00 0.00 34.56 2.29
89 90 3.749088 CCCTTGACGCACAACTAAATGTA 59.251 43.478 0.00 0.00 34.56 2.29
90 91 2.552315 CCCTTGACGCACAACTAAATGT 59.448 45.455 0.00 0.00 34.56 2.71
91 92 2.095263 CCCCTTGACGCACAACTAAATG 60.095 50.000 0.00 0.00 34.56 2.32
92 93 2.159382 CCCCTTGACGCACAACTAAAT 58.841 47.619 0.00 0.00 34.56 1.40
93 94 1.141254 TCCCCTTGACGCACAACTAAA 59.859 47.619 0.00 0.00 34.56 1.85
94 95 0.759959 TCCCCTTGACGCACAACTAA 59.240 50.000 0.00 0.00 34.56 2.24
95 96 0.981183 ATCCCCTTGACGCACAACTA 59.019 50.000 0.00 0.00 34.56 2.24
96 97 0.606401 CATCCCCTTGACGCACAACT 60.606 55.000 0.00 0.00 34.56 3.16
97 98 0.605319 TCATCCCCTTGACGCACAAC 60.605 55.000 0.00 0.00 34.56 3.32
98 99 0.605319 GTCATCCCCTTGACGCACAA 60.605 55.000 0.00 0.00 36.93 3.33
99 100 1.003839 GTCATCCCCTTGACGCACA 60.004 57.895 0.00 0.00 36.93 4.57
100 101 3.890674 GTCATCCCCTTGACGCAC 58.109 61.111 0.00 0.00 36.93 5.34
104 105 6.208599 TGTGAAAATTAAGTCATCCCCTTGAC 59.791 38.462 0.00 0.00 45.15 3.18
105 106 6.310941 TGTGAAAATTAAGTCATCCCCTTGA 58.689 36.000 0.00 0.00 0.00 3.02
106 107 6.588719 TGTGAAAATTAAGTCATCCCCTTG 57.411 37.500 0.00 0.00 0.00 3.61
133 134 9.582431 CTCTTTCAAGCATGTCAATATTTGATT 57.418 29.630 0.00 0.00 42.47 2.57
134 135 8.746530 ACTCTTTCAAGCATGTCAATATTTGAT 58.253 29.630 0.00 0.00 42.47 2.57
135 136 8.114331 ACTCTTTCAAGCATGTCAATATTTGA 57.886 30.769 0.00 0.00 37.33 2.69
136 137 8.644619 CAACTCTTTCAAGCATGTCAATATTTG 58.355 33.333 0.00 0.00 0.00 2.32
137 138 8.362639 ACAACTCTTTCAAGCATGTCAATATTT 58.637 29.630 0.00 0.00 0.00 1.40
138 139 7.889469 ACAACTCTTTCAAGCATGTCAATATT 58.111 30.769 0.00 0.00 0.00 1.28
139 140 7.175467 TGACAACTCTTTCAAGCATGTCAATAT 59.825 33.333 14.35 0.00 38.44 1.28
140 141 6.486320 TGACAACTCTTTCAAGCATGTCAATA 59.514 34.615 14.35 0.18 38.44 1.90
141 142 5.300034 TGACAACTCTTTCAAGCATGTCAAT 59.700 36.000 14.35 0.00 38.44 2.57
142 143 4.639755 TGACAACTCTTTCAAGCATGTCAA 59.360 37.500 14.35 4.69 38.44 3.18
143 144 4.198530 TGACAACTCTTTCAAGCATGTCA 58.801 39.130 13.40 13.40 38.74 3.58
144 145 4.818534 TGACAACTCTTTCAAGCATGTC 57.181 40.909 0.00 10.08 35.29 3.06
145 146 5.779529 AATGACAACTCTTTCAAGCATGT 57.220 34.783 0.00 0.00 0.00 3.21
146 147 7.140705 TGTTAATGACAACTCTTTCAAGCATG 58.859 34.615 0.00 0.00 34.69 4.06
147 148 7.275888 TGTTAATGACAACTCTTTCAAGCAT 57.724 32.000 0.00 0.00 34.69 3.79
148 149 6.691754 TGTTAATGACAACTCTTTCAAGCA 57.308 33.333 0.00 0.00 34.69 3.91
149 150 8.078596 AGAATGTTAATGACAACTCTTTCAAGC 58.921 33.333 0.00 0.00 42.62 4.01
150 151 9.390795 CAGAATGTTAATGACAACTCTTTCAAG 57.609 33.333 0.00 0.00 42.62 3.02
151 152 7.862372 GCAGAATGTTAATGACAACTCTTTCAA 59.138 33.333 0.00 0.00 42.62 2.69
152 153 7.362662 GCAGAATGTTAATGACAACTCTTTCA 58.637 34.615 0.00 0.00 42.62 2.69
153 154 6.803807 GGCAGAATGTTAATGACAACTCTTTC 59.196 38.462 0.00 0.00 42.62 2.62
154 155 6.568462 CGGCAGAATGTTAATGACAACTCTTT 60.568 38.462 0.00 0.00 42.62 2.52
155 156 5.106555 CGGCAGAATGTTAATGACAACTCTT 60.107 40.000 0.00 0.00 42.62 2.85
156 157 4.393062 CGGCAGAATGTTAATGACAACTCT 59.607 41.667 0.00 0.00 42.62 3.24
157 158 4.391830 TCGGCAGAATGTTAATGACAACTC 59.608 41.667 0.00 0.00 42.62 3.01
158 159 4.323417 TCGGCAGAATGTTAATGACAACT 58.677 39.130 0.00 0.00 42.62 3.16
159 160 4.678509 TCGGCAGAATGTTAATGACAAC 57.321 40.909 0.00 0.00 42.62 3.32
160 161 5.895636 AATCGGCAGAATGTTAATGACAA 57.104 34.783 0.00 0.00 42.62 3.18
161 162 5.392919 CCAAATCGGCAGAATGTTAATGACA 60.393 40.000 0.00 0.00 43.71 3.58
162 163 5.036737 CCAAATCGGCAGAATGTTAATGAC 58.963 41.667 0.00 0.00 39.31 3.06
163 164 4.946772 TCCAAATCGGCAGAATGTTAATGA 59.053 37.500 0.00 0.00 39.31 2.57
164 165 5.247507 TCCAAATCGGCAGAATGTTAATG 57.752 39.130 0.00 0.00 39.31 1.90
165 166 5.913137 TTCCAAATCGGCAGAATGTTAAT 57.087 34.783 0.00 0.00 39.31 1.40
166 167 5.713792 TTTCCAAATCGGCAGAATGTTAA 57.286 34.783 0.00 0.00 39.31 2.01
167 168 5.913137 ATTTCCAAATCGGCAGAATGTTA 57.087 34.783 0.00 0.00 39.31 2.41
168 169 4.806640 ATTTCCAAATCGGCAGAATGTT 57.193 36.364 0.00 0.00 39.31 2.71
169 170 5.913137 TTATTTCCAAATCGGCAGAATGT 57.087 34.783 0.00 0.00 39.31 2.71
170 171 6.979817 TCATTTATTTCCAAATCGGCAGAATG 59.020 34.615 0.00 0.00 40.87 2.67
171 172 7.068593 TCTCATTTATTTCCAAATCGGCAGAAT 59.931 33.333 0.00 0.00 33.14 2.40
172 173 6.376864 TCTCATTTATTTCCAAATCGGCAGAA 59.623 34.615 0.00 0.00 33.14 3.02
173 174 5.885352 TCTCATTTATTTCCAAATCGGCAGA 59.115 36.000 0.00 0.00 33.14 4.26
174 175 6.038603 TCTCTCATTTATTTCCAAATCGGCAG 59.961 38.462 0.00 0.00 33.14 4.85
175 176 5.885352 TCTCTCATTTATTTCCAAATCGGCA 59.115 36.000 0.00 0.00 33.14 5.69
176 177 6.183360 TGTCTCTCATTTATTTCCAAATCGGC 60.183 38.462 0.00 0.00 33.14 5.54
177 178 7.320443 TGTCTCTCATTTATTTCCAAATCGG 57.680 36.000 0.00 0.00 0.00 4.18
178 179 8.615211 TCATGTCTCTCATTTATTTCCAAATCG 58.385 33.333 0.00 0.00 34.09 3.34
179 180 9.947669 CTCATGTCTCTCATTTATTTCCAAATC 57.052 33.333 0.00 0.00 34.09 2.17
180 181 8.910944 CCTCATGTCTCTCATTTATTTCCAAAT 58.089 33.333 0.00 0.00 34.09 2.32
181 182 7.890127 ACCTCATGTCTCTCATTTATTTCCAAA 59.110 33.333 0.00 0.00 34.09 3.28
182 183 7.405292 ACCTCATGTCTCTCATTTATTTCCAA 58.595 34.615 0.00 0.00 34.09 3.53
183 184 6.962182 ACCTCATGTCTCTCATTTATTTCCA 58.038 36.000 0.00 0.00 34.09 3.53
184 185 7.337942 ACAACCTCATGTCTCTCATTTATTTCC 59.662 37.037 0.00 0.00 34.09 3.13
185 186 8.273780 ACAACCTCATGTCTCTCATTTATTTC 57.726 34.615 0.00 0.00 34.09 2.17
186 187 8.641498 AACAACCTCATGTCTCTCATTTATTT 57.359 30.769 0.00 0.00 34.09 1.40
187 188 9.167311 GTAACAACCTCATGTCTCTCATTTATT 57.833 33.333 0.00 0.00 34.09 1.40
188 189 8.543774 AGTAACAACCTCATGTCTCTCATTTAT 58.456 33.333 0.00 0.00 34.09 1.40
189 190 7.907389 AGTAACAACCTCATGTCTCTCATTTA 58.093 34.615 0.00 0.00 34.09 1.40
190 191 6.773638 AGTAACAACCTCATGTCTCTCATTT 58.226 36.000 0.00 0.00 34.09 2.32
191 192 6.365970 AGTAACAACCTCATGTCTCTCATT 57.634 37.500 0.00 0.00 34.09 2.57
192 193 7.667575 ATAGTAACAACCTCATGTCTCTCAT 57.332 36.000 0.00 0.00 37.22 2.90
193 194 8.589701 TTATAGTAACAACCTCATGTCTCTCA 57.410 34.615 0.00 0.00 31.81 3.27
194 195 9.871238 TTTTATAGTAACAACCTCATGTCTCTC 57.129 33.333 0.00 0.00 31.81 3.20
195 196 9.877178 CTTTTATAGTAACAACCTCATGTCTCT 57.123 33.333 0.00 0.00 31.81 3.10
196 197 9.654663 ACTTTTATAGTAACAACCTCATGTCTC 57.345 33.333 0.00 0.00 34.56 3.36
197 198 9.436957 CACTTTTATAGTAACAACCTCATGTCT 57.563 33.333 0.00 0.00 34.56 3.41
198 199 9.431887 TCACTTTTATAGTAACAACCTCATGTC 57.568 33.333 0.00 0.00 34.56 3.06
199 200 9.959721 ATCACTTTTATAGTAACAACCTCATGT 57.040 29.630 0.00 0.00 34.56 3.21
201 202 9.959721 ACATCACTTTTATAGTAACAACCTCAT 57.040 29.630 0.00 0.00 34.56 2.90
202 203 9.787435 AACATCACTTTTATAGTAACAACCTCA 57.213 29.630 0.00 0.00 34.56 3.86
231 232 9.716556 GAATCACCCCCTAGAAATAGATAGATA 57.283 37.037 0.00 0.00 0.00 1.98
232 233 7.343316 CGAATCACCCCCTAGAAATAGATAGAT 59.657 40.741 0.00 0.00 0.00 1.98
233 234 6.663953 CGAATCACCCCCTAGAAATAGATAGA 59.336 42.308 0.00 0.00 0.00 1.98
234 235 6.437793 ACGAATCACCCCCTAGAAATAGATAG 59.562 42.308 0.00 0.00 0.00 2.08
235 236 6.210784 CACGAATCACCCCCTAGAAATAGATA 59.789 42.308 0.00 0.00 0.00 1.98
236 237 5.012148 CACGAATCACCCCCTAGAAATAGAT 59.988 44.000 0.00 0.00 0.00 1.98
237 238 4.344102 CACGAATCACCCCCTAGAAATAGA 59.656 45.833 0.00 0.00 0.00 1.98
238 239 4.344102 TCACGAATCACCCCCTAGAAATAG 59.656 45.833 0.00 0.00 0.00 1.73
239 240 4.291792 TCACGAATCACCCCCTAGAAATA 58.708 43.478 0.00 0.00 0.00 1.40
240 241 3.112263 TCACGAATCACCCCCTAGAAAT 58.888 45.455 0.00 0.00 0.00 2.17
241 242 2.542550 TCACGAATCACCCCCTAGAAA 58.457 47.619 0.00 0.00 0.00 2.52
242 243 2.241281 TCACGAATCACCCCCTAGAA 57.759 50.000 0.00 0.00 0.00 2.10
243 244 2.241281 TTCACGAATCACCCCCTAGA 57.759 50.000 0.00 0.00 0.00 2.43
244 245 3.206150 CATTTCACGAATCACCCCCTAG 58.794 50.000 0.00 0.00 0.00 3.02
245 246 2.574369 ACATTTCACGAATCACCCCCTA 59.426 45.455 0.00 0.00 0.00 3.53
246 247 1.354368 ACATTTCACGAATCACCCCCT 59.646 47.619 0.00 0.00 0.00 4.79
247 248 1.834188 ACATTTCACGAATCACCCCC 58.166 50.000 0.00 0.00 0.00 5.40
248 249 3.126343 GTGTACATTTCACGAATCACCCC 59.874 47.826 0.00 0.00 0.00 4.95
249 250 4.000988 AGTGTACATTTCACGAATCACCC 58.999 43.478 0.00 0.00 40.28 4.61
250 251 5.607119 AAGTGTACATTTCACGAATCACC 57.393 39.130 0.00 0.00 40.28 4.02
251 252 7.740346 CACTTAAGTGTACATTTCACGAATCAC 59.260 37.037 24.70 0.00 40.96 3.06
252 253 7.095397 CCACTTAAGTGTACATTTCACGAATCA 60.095 37.037 29.05 0.00 44.21 2.57
253 254 7.234384 CCACTTAAGTGTACATTTCACGAATC 58.766 38.462 29.05 0.00 44.21 2.52
254 255 6.148811 CCCACTTAAGTGTACATTTCACGAAT 59.851 38.462 29.05 0.00 44.21 3.34
255 256 5.467399 CCCACTTAAGTGTACATTTCACGAA 59.533 40.000 29.05 0.00 44.21 3.85
256 257 4.992319 CCCACTTAAGTGTACATTTCACGA 59.008 41.667 29.05 0.00 44.21 4.35
257 258 4.992319 TCCCACTTAAGTGTACATTTCACG 59.008 41.667 29.05 12.87 44.21 4.35
258 259 5.106673 GCTCCCACTTAAGTGTACATTTCAC 60.107 44.000 29.05 9.05 44.21 3.18
259 260 5.001232 GCTCCCACTTAAGTGTACATTTCA 58.999 41.667 29.05 7.19 44.21 2.69
260 261 5.001232 TGCTCCCACTTAAGTGTACATTTC 58.999 41.667 29.05 14.24 44.21 2.17
261 262 4.980573 TGCTCCCACTTAAGTGTACATTT 58.019 39.130 29.05 8.77 44.21 2.32
262 263 4.041691 ACTGCTCCCACTTAAGTGTACATT 59.958 41.667 29.05 14.96 44.21 2.71
263 264 3.583086 ACTGCTCCCACTTAAGTGTACAT 59.417 43.478 29.05 9.30 44.21 2.29
264 265 2.969950 ACTGCTCCCACTTAAGTGTACA 59.030 45.455 29.05 20.30 44.21 2.90
265 266 3.586892 GACTGCTCCCACTTAAGTGTAC 58.413 50.000 29.05 17.45 44.21 2.90
266 267 2.565834 GGACTGCTCCCACTTAAGTGTA 59.434 50.000 29.05 18.03 44.21 2.90
267 268 1.348036 GGACTGCTCCCACTTAAGTGT 59.652 52.381 29.05 12.68 44.21 3.55
268 269 2.100605 GGACTGCTCCCACTTAAGTG 57.899 55.000 25.79 25.79 45.23 3.16
282 283 2.105477 CAGATTATGGTGGAGGGGACTG 59.895 54.545 0.00 0.00 44.43 3.51
284 285 2.127708 ACAGATTATGGTGGAGGGGAC 58.872 52.381 0.00 0.00 0.00 4.46
285 286 2.126882 CACAGATTATGGTGGAGGGGA 58.873 52.381 0.00 0.00 0.00 4.81
286 287 1.477558 GCACAGATTATGGTGGAGGGG 60.478 57.143 0.00 0.00 35.58 4.79
287 288 1.477558 GGCACAGATTATGGTGGAGGG 60.478 57.143 0.00 0.00 35.58 4.30
288 289 1.212688 TGGCACAGATTATGGTGGAGG 59.787 52.381 0.00 0.00 35.58 4.30
289 290 2.715749 TGGCACAGATTATGGTGGAG 57.284 50.000 0.00 0.00 35.58 3.86
303 304 2.658285 TGAATGGGAGATGAATGGCAC 58.342 47.619 0.00 0.00 0.00 5.01
304 305 3.385314 TTGAATGGGAGATGAATGGCA 57.615 42.857 0.00 0.00 0.00 4.92
305 306 3.006537 CCATTGAATGGGAGATGAATGGC 59.993 47.826 16.42 0.00 46.86 4.40
306 307 4.866508 CCATTGAATGGGAGATGAATGG 57.133 45.455 16.42 0.00 46.86 3.16
318 319 7.843490 AAAATGAAATCTGAGCCATTGAATG 57.157 32.000 0.00 0.00 30.56 2.67
319 320 8.319146 AGAAAAATGAAATCTGAGCCATTGAAT 58.681 29.630 0.00 0.00 30.56 2.57
320 321 7.673180 AGAAAAATGAAATCTGAGCCATTGAA 58.327 30.769 0.00 0.00 30.56 2.69
321 322 7.235935 AGAAAAATGAAATCTGAGCCATTGA 57.764 32.000 0.00 0.00 30.56 2.57
322 323 9.595823 AATAGAAAAATGAAATCTGAGCCATTG 57.404 29.630 0.00 0.00 30.56 2.82
323 324 9.813446 GAATAGAAAAATGAAATCTGAGCCATT 57.187 29.630 0.00 0.00 0.00 3.16
324 325 9.198475 AGAATAGAAAAATGAAATCTGAGCCAT 57.802 29.630 0.00 0.00 0.00 4.40
325 326 8.585471 AGAATAGAAAAATGAAATCTGAGCCA 57.415 30.769 0.00 0.00 0.00 4.75
326 327 9.866798 AAAGAATAGAAAAATGAAATCTGAGCC 57.133 29.630 0.00 0.00 0.00 4.70
336 337 9.630098 GCTTCATGTGAAAGAATAGAAAAATGA 57.370 29.630 0.00 0.00 33.07 2.57
337 338 9.635520 AGCTTCATGTGAAAGAATAGAAAAATG 57.364 29.630 0.00 0.00 33.07 2.32
338 339 9.852091 GAGCTTCATGTGAAAGAATAGAAAAAT 57.148 29.630 0.00 0.00 33.07 1.82
339 340 8.849168 TGAGCTTCATGTGAAAGAATAGAAAAA 58.151 29.630 0.00 0.00 33.07 1.94
340 341 8.394971 TGAGCTTCATGTGAAAGAATAGAAAA 57.605 30.769 0.00 0.00 33.07 2.29
341 342 7.879677 TCTGAGCTTCATGTGAAAGAATAGAAA 59.120 33.333 0.00 0.00 33.07 2.52
342 343 7.389232 TCTGAGCTTCATGTGAAAGAATAGAA 58.611 34.615 0.00 0.00 33.07 2.10
343 344 6.939622 TCTGAGCTTCATGTGAAAGAATAGA 58.060 36.000 0.00 0.00 33.07 1.98
344 345 7.789273 ATCTGAGCTTCATGTGAAAGAATAG 57.211 36.000 0.00 0.00 33.07 1.73
345 346 8.045507 AGAATCTGAGCTTCATGTGAAAGAATA 58.954 33.333 0.00 0.00 33.07 1.75
346 347 6.885376 AGAATCTGAGCTTCATGTGAAAGAAT 59.115 34.615 0.00 0.00 33.07 2.40
347 348 6.236409 AGAATCTGAGCTTCATGTGAAAGAA 58.764 36.000 0.00 0.00 33.07 2.52
348 349 5.802465 AGAATCTGAGCTTCATGTGAAAGA 58.198 37.500 0.00 0.00 33.07 2.52
349 350 7.789273 ATAGAATCTGAGCTTCATGTGAAAG 57.211 36.000 0.00 0.00 33.07 2.62
350 351 8.481314 AGTATAGAATCTGAGCTTCATGTGAAA 58.519 33.333 0.00 0.00 33.07 2.69
351 352 8.016301 AGTATAGAATCTGAGCTTCATGTGAA 57.984 34.615 0.00 0.00 0.00 3.18
352 353 7.594351 AGTATAGAATCTGAGCTTCATGTGA 57.406 36.000 0.00 0.00 0.00 3.58
353 354 8.575589 ACTAGTATAGAATCTGAGCTTCATGTG 58.424 37.037 0.00 0.00 42.77 3.21
354 355 8.704849 ACTAGTATAGAATCTGAGCTTCATGT 57.295 34.615 0.00 0.00 42.77 3.21
355 356 9.409312 CAACTAGTATAGAATCTGAGCTTCATG 57.591 37.037 0.00 0.00 42.77 3.07
356 357 8.087750 GCAACTAGTATAGAATCTGAGCTTCAT 58.912 37.037 0.00 0.00 42.77 2.57
357 358 7.286546 AGCAACTAGTATAGAATCTGAGCTTCA 59.713 37.037 0.00 0.00 42.77 3.02
358 359 7.657336 AGCAACTAGTATAGAATCTGAGCTTC 58.343 38.462 0.00 0.00 42.77 3.86
359 360 7.255801 GGAGCAACTAGTATAGAATCTGAGCTT 60.256 40.741 0.00 0.00 42.77 3.74
360 361 6.208599 GGAGCAACTAGTATAGAATCTGAGCT 59.791 42.308 0.00 0.00 42.77 4.09
361 362 6.386654 GGAGCAACTAGTATAGAATCTGAGC 58.613 44.000 0.00 0.00 42.77 4.26
362 363 6.719370 AGGGAGCAACTAGTATAGAATCTGAG 59.281 42.308 0.00 0.00 42.77 3.35
363 364 6.491745 CAGGGAGCAACTAGTATAGAATCTGA 59.508 42.308 0.00 0.00 42.77 3.27
364 365 6.266558 ACAGGGAGCAACTAGTATAGAATCTG 59.733 42.308 0.00 2.45 42.77 2.90
365 366 6.377912 ACAGGGAGCAACTAGTATAGAATCT 58.622 40.000 0.00 0.00 42.77 2.40
366 367 6.658188 ACAGGGAGCAACTAGTATAGAATC 57.342 41.667 0.00 0.00 42.77 2.52
367 368 6.722129 CCTACAGGGAGCAACTAGTATAGAAT 59.278 42.308 0.00 0.00 37.99 2.40
368 369 6.069331 CCTACAGGGAGCAACTAGTATAGAA 58.931 44.000 0.00 0.00 37.99 2.10
369 370 5.371769 TCCTACAGGGAGCAACTAGTATAGA 59.628 44.000 0.00 0.00 39.22 1.98
370 371 5.632118 TCCTACAGGGAGCAACTAGTATAG 58.368 45.833 0.00 0.00 41.40 1.31
371 372 5.658198 TCCTACAGGGAGCAACTAGTATA 57.342 43.478 0.00 0.00 39.58 1.47
372 373 4.537945 TCCTACAGGGAGCAACTAGTAT 57.462 45.455 0.00 0.00 39.58 2.12
373 374 4.264262 ACTTCCTACAGGGAGCAACTAGTA 60.264 45.833 3.24 0.00 45.07 1.82
374 375 2.921834 TCCTACAGGGAGCAACTAGT 57.078 50.000 0.00 0.00 39.58 2.57
375 376 3.100671 ACTTCCTACAGGGAGCAACTAG 58.899 50.000 3.24 0.00 45.07 2.57
376 377 3.185880 ACTTCCTACAGGGAGCAACTA 57.814 47.619 3.24 0.00 45.07 2.24
377 378 2.031495 ACTTCCTACAGGGAGCAACT 57.969 50.000 3.24 0.00 45.07 3.16
378 379 2.861147 AACTTCCTACAGGGAGCAAC 57.139 50.000 3.24 0.00 45.07 4.17
379 380 3.307480 GCTAAACTTCCTACAGGGAGCAA 60.307 47.826 3.24 0.00 45.07 3.91
380 381 2.236395 GCTAAACTTCCTACAGGGAGCA 59.764 50.000 3.24 0.00 45.07 4.26
381 382 2.502130 AGCTAAACTTCCTACAGGGAGC 59.498 50.000 3.24 0.49 45.07 4.70
382 383 4.957327 ACTAGCTAAACTTCCTACAGGGAG 59.043 45.833 1.67 1.67 46.66 4.30
383 384 4.944177 ACTAGCTAAACTTCCTACAGGGA 58.056 43.478 0.00 0.00 43.41 4.20
384 385 6.980416 ATACTAGCTAAACTTCCTACAGGG 57.020 41.667 0.00 0.00 35.41 4.45
385 386 8.258708 ACAAATACTAGCTAAACTTCCTACAGG 58.741 37.037 0.00 0.00 0.00 4.00
386 387 9.654663 AACAAATACTAGCTAAACTTCCTACAG 57.345 33.333 0.00 0.00 0.00 2.74
418 419 1.601903 GCCACTTCGTCAACACATTCA 59.398 47.619 0.00 0.00 0.00 2.57
419 420 1.873591 AGCCACTTCGTCAACACATTC 59.126 47.619 0.00 0.00 0.00 2.67
438 439 8.870879 GGCCTTATATAGCAACTTAATAACGAG 58.129 37.037 0.00 0.00 0.00 4.18
510 511 7.170658 GGATTTAGATTTGGAGAGAAGATGACG 59.829 40.741 0.00 0.00 0.00 4.35
543 544 2.274542 TGGGGTGCCTAGAAAATCTCA 58.725 47.619 0.00 0.00 0.00 3.27
564 565 2.049888 TGACAACATGGCTGACAACA 57.950 45.000 0.00 0.00 0.00 3.33
567 568 1.317613 GGTTGACAACATGGCTGACA 58.682 50.000 19.58 0.00 0.00 3.58
572 573 0.251341 AGGAGGGTTGACAACATGGC 60.251 55.000 19.58 6.01 0.00 4.40
575 576 1.882352 GCGAAGGAGGGTTGACAACAT 60.882 52.381 19.58 7.75 0.00 2.71
577 578 1.235281 GGCGAAGGAGGGTTGACAAC 61.235 60.000 9.97 9.97 0.00 3.32
578 579 1.072505 GGCGAAGGAGGGTTGACAA 59.927 57.895 0.00 0.00 0.00 3.18
580 581 2.046217 GGGCGAAGGAGGGTTGAC 60.046 66.667 0.00 0.00 0.00 3.18
581 582 3.702048 CGGGCGAAGGAGGGTTGA 61.702 66.667 0.00 0.00 0.00 3.18
587 588 4.821589 GACCTGCGGGCGAAGGAG 62.822 72.222 12.89 0.00 43.85 3.69
595 596 4.530857 GGGATGACGACCTGCGGG 62.531 72.222 11.02 11.02 46.49 6.13
644 647 3.176411 CATCTGGTAGATAGGGGCATCA 58.824 50.000 0.00 0.00 32.12 3.07
661 664 5.103940 AGAGAGAGAAACTAGAGCTCCATCT 60.104 44.000 10.93 7.06 0.00 2.90
674 677 2.869101 AGCCCCAAAGAGAGAGAAAC 57.131 50.000 0.00 0.00 0.00 2.78
781 784 8.862325 ACTTTTAATCAATCATGACAGTACCA 57.138 30.769 0.00 0.00 38.69 3.25
819 1113 4.457603 CCATACACATCGGTTCCTCAAAAA 59.542 41.667 0.00 0.00 0.00 1.94
820 1114 4.006989 CCATACACATCGGTTCCTCAAAA 58.993 43.478 0.00 0.00 0.00 2.44
830 1138 1.229428 GCACATCCCATACACATCGG 58.771 55.000 0.00 0.00 0.00 4.18
860 1168 0.871057 AGTGCTGCTCTTTTCTTCGC 59.129 50.000 0.00 0.00 0.00 4.70
878 1186 1.302832 GCCCACTCCCAACTGTCAG 60.303 63.158 0.00 0.00 0.00 3.51
1137 1448 3.959991 GACCTTGCCGAGACTGCCC 62.960 68.421 0.00 0.00 0.00 5.36
1797 2119 1.282817 TACATTCAAACGCGATCCGG 58.717 50.000 15.93 0.00 42.52 5.14
1824 2146 3.190327 TCAATAAGTCCAAACATGGCGTG 59.810 43.478 4.87 4.87 0.00 5.34
1921 2383 5.026038 TGTCTAAGTTTCTGTTTTCCCGA 57.974 39.130 0.00 0.00 0.00 5.14
1922 2384 5.744666 TTGTCTAAGTTTCTGTTTTCCCG 57.255 39.130 0.00 0.00 0.00 5.14
1923 2385 8.194769 TCAAATTGTCTAAGTTTCTGTTTTCCC 58.805 33.333 0.00 0.00 0.00 3.97
1929 2391 9.736023 GTTCATTCAAATTGTCTAAGTTTCTGT 57.264 29.630 0.00 0.00 0.00 3.41
1954 2416 5.932303 GTGTCTGTGTCTATAACCAACATGT 59.068 40.000 0.00 0.00 0.00 3.21
1989 2451 5.990996 TCGTTTCGGTCCTTGTAATTTAACT 59.009 36.000 0.00 0.00 0.00 2.24
2001 2463 4.402056 AATCATACATCGTTTCGGTCCT 57.598 40.909 0.00 0.00 0.00 3.85
2035 2497 4.453136 GTGTGGGCGTTAGTTTTTCTGATA 59.547 41.667 0.00 0.00 0.00 2.15
2036 2498 3.252458 GTGTGGGCGTTAGTTTTTCTGAT 59.748 43.478 0.00 0.00 0.00 2.90
2129 2591 8.581578 AGCCGAAAACCAAAAAGATTTCTATTA 58.418 29.630 0.00 0.00 31.29 0.98
2198 2660 6.237728 CGAGACGGATTTAATGATGAAAACGA 60.238 38.462 8.95 0.00 0.00 3.85
2485 2955 7.902387 AAAACGGAGATTAAGAAACTAGACC 57.098 36.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.