Multiple sequence alignment - TraesCS6A01G263900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G263900 chr6A 100.000 5725 0 0 1 5725 486962477 486968201 0.000000e+00 10573.0
1 TraesCS6A01G263900 chr6D 94.053 2556 76 29 2556 5086 354841193 354838689 0.000000e+00 3808.0
2 TraesCS6A01G263900 chr6D 91.146 2225 112 43 363 2557 354843444 354841275 0.000000e+00 2939.0
3 TraesCS6A01G263900 chr6D 92.945 326 21 1 5094 5419 354838457 354838134 1.870000e-129 473.0
4 TraesCS6A01G263900 chr6D 90.223 358 30 4 1 357 354843929 354843576 4.040000e-126 462.0
5 TraesCS6A01G263900 chr6D 85.714 154 20 2 120 272 9968174 9968326 1.650000e-35 161.0
6 TraesCS6A01G263900 chr6B 90.825 1733 82 29 757 2444 523199761 523201461 0.000000e+00 2248.0
7 TraesCS6A01G263900 chr6B 95.961 1139 41 2 3583 4721 523202583 523203716 0.000000e+00 1844.0
8 TraesCS6A01G263900 chr6B 91.308 1070 60 16 2439 3493 523201533 523202584 0.000000e+00 1430.0
9 TraesCS6A01G263900 chr6B 90.556 360 29 5 1 357 523198569 523198926 6.710000e-129 472.0
10 TraesCS6A01G263900 chr6B 86.275 459 28 15 4722 5169 523203753 523204187 3.120000e-127 466.0
11 TraesCS6A01G263900 chr6B 87.887 355 33 9 350 703 523199028 523199373 5.340000e-110 409.0
12 TraesCS6A01G263900 chr6B 87.368 190 21 2 5232 5418 523204180 523204369 1.250000e-51 215.0
13 TraesCS6A01G263900 chr6B 83.871 155 22 3 120 272 632772036 632772189 1.660000e-30 145.0
14 TraesCS6A01G263900 chr4A 94.558 294 16 0 5432 5725 197996306 197996599 6.760000e-124 455.0
15 TraesCS6A01G263900 chr4A 87.879 99 5 2 3487 3585 668498707 668498798 6.060000e-20 110.0
16 TraesCS6A01G263900 chr2D 92.833 293 20 1 5434 5725 501280232 501279940 1.910000e-114 424.0
17 TraesCS6A01G263900 chr7D 91.525 295 21 1 5435 5725 48366999 48366705 2.480000e-108 403.0
18 TraesCS6A01G263900 chr7D 94.805 77 4 0 3484 3560 5068178 5068102 2.800000e-23 121.0
19 TraesCS6A01G263900 chr7D 90.805 87 6 1 3474 3560 116592484 116592568 1.300000e-21 115.0
20 TraesCS6A01G263900 chr7D 92.208 77 6 0 3484 3560 22964349 22964273 6.060000e-20 110.0
21 TraesCS6A01G263900 chr7D 100.000 29 0 0 359 387 93997503 93997531 3.000000e-03 54.7
22 TraesCS6A01G263900 chr3A 93.651 252 15 1 5475 5725 10680407 10680658 5.420000e-100 375.0
23 TraesCS6A01G263900 chr3A 94.068 118 7 0 5419 5536 66563956 66563839 4.560000e-41 180.0
24 TraesCS6A01G263900 chr3A 84.034 119 19 0 5419 5537 9973135 9973017 1.300000e-21 115.0
25 TraesCS6A01G263900 chr3A 82.667 75 12 1 5645 5718 403631849 403631775 1.330000e-06 65.8
26 TraesCS6A01G263900 chr3A 94.737 38 2 0 5418 5455 497926900 497926863 6.190000e-05 60.2
27 TraesCS6A01G263900 chr3B 81.136 440 66 15 360 791 17684589 17684159 2.560000e-88 337.0
28 TraesCS6A01G263900 chr3B 84.711 242 32 4 117 356 17684964 17684726 2.670000e-58 237.0
29 TraesCS6A01G263900 chr7B 91.304 207 17 1 5432 5637 406938962 406938756 1.210000e-71 281.0
30 TraesCS6A01G263900 chrUn 85.778 225 31 1 132 356 92810942 92810719 2.670000e-58 237.0
31 TraesCS6A01G263900 chr1B 89.706 136 12 2 117 251 326788112 326787978 7.630000e-39 172.0
32 TraesCS6A01G263900 chr1B 85.366 123 16 2 5416 5537 653314557 653314678 6.020000e-25 126.0
33 TraesCS6A01G263900 chr3D 97.333 75 2 0 3486 3560 338881553 338881627 1.670000e-25 128.0
34 TraesCS6A01G263900 chr3D 80.808 99 17 2 5151 5249 15002908 15002812 6.150000e-10 76.8
35 TraesCS6A01G263900 chr5A 86.726 113 14 1 5426 5537 59441825 59441713 2.170000e-24 124.0
36 TraesCS6A01G263900 chr5A 84.874 119 18 0 5419 5537 44559850 44559732 2.800000e-23 121.0
37 TraesCS6A01G263900 chr5D 92.857 84 5 1 3478 3560 111788629 111788712 2.800000e-23 121.0
38 TraesCS6A01G263900 chr5D 87.368 95 10 1 3492 3584 41115992 41116086 2.180000e-19 108.0
39 TraesCS6A01G263900 chr2A 93.590 78 5 0 3483 3560 367831950 367832027 3.620000e-22 117.0
40 TraesCS6A01G263900 chr4D 80.420 143 26 2 5169 5311 121437020 121437160 2.180000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G263900 chr6A 486962477 486968201 5724 False 10573.0 10573 100.000000 1 5725 1 chr6A.!!$F1 5724
1 TraesCS6A01G263900 chr6D 354838134 354843929 5795 True 1920.5 3808 92.091750 1 5419 4 chr6D.!!$R1 5418
2 TraesCS6A01G263900 chr6B 523198569 523204369 5800 False 1012.0 2248 90.025714 1 5418 7 chr6B.!!$F2 5417
3 TraesCS6A01G263900 chr3B 17684159 17684964 805 True 287.0 337 82.923500 117 791 2 chr3B.!!$R1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1515 0.317519 TATGCGCACATCGTACGGAG 60.318 55.000 14.9 10.74 41.07 4.63 F
2088 2626 0.108520 CTGGCATTGGTGTTGATGGC 60.109 55.000 3.3 3.30 45.82 4.40 F
3156 3870 0.610232 GCTTTGCAGATCCTGGTGGT 60.610 55.000 0.0 0.00 34.23 4.16 F
3852 4571 1.201181 TGCAGCACGAGTTTTGTTGTT 59.799 42.857 0.0 0.00 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 2700 3.009723 CGACACATTACTTGGCCATTCT 58.990 45.455 6.09 0.00 0.00 2.40 R
4003 4722 2.622064 AAACTATGCCCTCCATCGTC 57.378 50.000 0.00 0.00 35.34 4.20 R
4101 4820 0.737715 CTTGAAAGCCCCGAGACTCG 60.738 60.000 18.08 18.08 40.07 4.18 R
5580 6572 0.034198 TTTTCACCTGGCATCGACGA 59.966 50.000 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.874528 GGAAGAAGACATGTTGATTTTTCCAAT 59.125 33.333 22.93 6.03 34.43 3.16
44 45 9.246670 TGATTTTTCCAATGATCTTGTGAGTAT 57.753 29.630 0.00 0.00 0.00 2.12
47 48 9.695526 TTTTTCCAATGATCTTGTGAGTATTTG 57.304 29.630 0.00 0.00 0.00 2.32
59 60 9.734620 TCTTGTGAGTATTTGTTTGATTCTTTG 57.265 29.630 0.00 0.00 0.00 2.77
81 82 6.405278 TGAAGATGATCCTATAAGCGTTGA 57.595 37.500 0.00 0.00 0.00 3.18
176 178 4.820894 AAGTGTAGCTTTCGTCCCTAAT 57.179 40.909 0.00 0.00 32.57 1.73
216 219 4.607239 TCCGTCCCTCAACTCTTAATACT 58.393 43.478 0.00 0.00 0.00 2.12
282 286 4.454161 CGGTTTTGACCTTATGTGACATGA 59.546 41.667 8.61 0.00 0.00 3.07
296 300 3.056678 GTGACATGATTTTGGCCACATCA 60.057 43.478 23.29 23.29 0.00 3.07
300 304 4.407621 ACATGATTTTGGCCACATCATCAT 59.592 37.500 26.85 21.87 35.81 2.45
316 320 4.717877 TCATCATTGTAAGGTGGCATAGG 58.282 43.478 0.00 0.00 0.00 2.57
387 529 2.025416 TGGTCAACATGATAGTTGGGGG 60.025 50.000 0.00 0.00 46.74 5.40
396 538 5.914716 ACATGATAGTTGGGGGTAAGGATAA 59.085 40.000 0.00 0.00 0.00 1.75
441 583 1.828979 AACCGACAGAGGAGAGAGAC 58.171 55.000 0.00 0.00 34.73 3.36
503 645 2.354821 GCATTCCCCTTACAATGACGAC 59.645 50.000 0.00 0.00 32.56 4.34
543 685 6.869388 GCCATAAAAAGTCAAAACCGGATTTA 59.131 34.615 9.46 0.00 0.00 1.40
544 686 7.062956 GCCATAAAAAGTCAAAACCGGATTTAG 59.937 37.037 9.46 4.35 0.00 1.85
607 749 4.342951 TCAAGAGTCGAGGGACAAAAGTTA 59.657 41.667 0.00 0.00 45.92 2.24
614 756 3.628487 CGAGGGACAAAAGTTACACCAAA 59.372 43.478 0.00 0.00 0.00 3.28
617 759 6.016943 CGAGGGACAAAAGTTACACCAAAATA 60.017 38.462 0.00 0.00 0.00 1.40
651 793 8.133754 ACAATGACACATCAAATCAAAAACAG 57.866 30.769 0.00 0.00 38.69 3.16
669 811 7.797121 AAAACAGGGTTTGATTGAGGAATAT 57.203 32.000 0.00 0.00 0.00 1.28
685 827 6.142259 AGGAATATCACTACGAGGGACTAT 57.858 41.667 0.00 0.00 41.55 2.12
692 834 6.430962 TCACTACGAGGGACTATACATACT 57.569 41.667 0.00 0.00 41.55 2.12
695 1144 8.093307 TCACTACGAGGGACTATACATACTTAG 58.907 40.741 0.00 0.00 41.55 2.18
704 1172 9.012161 GGGACTATACATACTTAGTAGAGTTGG 57.988 40.741 5.77 1.51 42.26 3.77
714 1182 1.076677 AGTAGAGTTGGGGGACGAAGA 59.923 52.381 0.00 0.00 0.00 2.87
718 1186 3.385115 AGAGTTGGGGGACGAAGATTAT 58.615 45.455 0.00 0.00 0.00 1.28
753 1223 7.335422 AGAGTTTAGATATGAAAGCCACACTTG 59.665 37.037 0.00 0.00 39.09 3.16
755 1225 4.307032 AGATATGAAAGCCACACTTGGT 57.693 40.909 0.00 0.00 45.98 3.67
770 1268 5.819991 ACACTTGGTGATTAGTTGATGGAT 58.180 37.500 4.62 0.00 36.96 3.41
784 1282 6.585416 AGTTGATGGATGAAAAAGCACTTTT 58.415 32.000 2.53 2.53 43.88 2.27
785 1283 7.725251 AGTTGATGGATGAAAAAGCACTTTTA 58.275 30.769 8.70 0.00 41.45 1.52
788 1287 7.370383 TGATGGATGAAAAAGCACTTTTACTC 58.630 34.615 8.70 5.01 41.45 2.59
792 1291 8.514594 TGGATGAAAAAGCACTTTTACTCTATG 58.485 33.333 8.70 0.00 41.45 2.23
882 1397 8.986929 TTTTTGAGAAGGAGAAGAGAAGAATT 57.013 30.769 0.00 0.00 0.00 2.17
883 1398 8.986929 TTTTGAGAAGGAGAAGAGAAGAATTT 57.013 30.769 0.00 0.00 0.00 1.82
985 1513 0.434628 CATATGCGCACATCGTACGG 59.565 55.000 14.90 2.32 41.07 4.02
987 1515 0.317519 TATGCGCACATCGTACGGAG 60.318 55.000 14.90 10.74 41.07 4.63
988 1516 2.202570 GCGCACATCGTACGGAGT 60.203 61.111 16.52 11.42 41.52 3.85
989 1517 1.063006 GCGCACATCGTACGGAGTA 59.937 57.895 16.52 0.00 39.17 2.59
1030 1558 1.249407 ACACAGAGAGTTCCTCGACC 58.751 55.000 0.00 0.00 46.49 4.79
1031 1559 1.202952 ACACAGAGAGTTCCTCGACCT 60.203 52.381 0.00 0.00 46.49 3.85
1032 1560 1.470890 CACAGAGAGTTCCTCGACCTC 59.529 57.143 0.00 0.00 46.49 3.85
1033 1561 0.730265 CAGAGAGTTCCTCGACCTCG 59.270 60.000 0.00 0.00 46.49 4.63
1034 1562 0.614294 AGAGAGTTCCTCGACCTCGA 59.386 55.000 0.00 0.00 46.49 4.04
1035 1563 0.728542 GAGAGTTCCTCGACCTCGAC 59.271 60.000 0.00 0.00 44.22 4.20
1067 1595 1.515521 CCCTTCGCTGTTGACCCAAC 61.516 60.000 3.10 3.10 43.78 3.77
1531 2059 2.062636 TGGGGGTCTTTCTAGCTTGTT 58.937 47.619 0.00 0.00 0.00 2.83
1536 2064 1.464997 GTCTTTCTAGCTTGTTGCCCG 59.535 52.381 0.00 0.00 44.23 6.13
1547 2075 3.884774 TTGCCCGAACTGCACCCT 61.885 61.111 0.00 0.00 38.72 4.34
1565 2093 2.420687 CCCTTCCCTGATCTGTTAGTGC 60.421 54.545 0.00 0.00 0.00 4.40
1571 2099 3.706594 CCCTGATCTGTTAGTGCCTTCTA 59.293 47.826 0.00 0.00 0.00 2.10
1606 2141 2.618241 TGGAATAGATGCATGTTTCGGC 59.382 45.455 2.46 0.00 0.00 5.54
1612 2147 1.024046 ATGCATGTTTCGGCGCAGTA 61.024 50.000 10.83 0.00 37.88 2.74
1617 2152 1.666872 GTTTCGGCGCAGTACTGGT 60.667 57.895 23.95 0.00 0.00 4.00
1628 2163 2.548480 GCAGTACTGGTTTGTGGACTTC 59.452 50.000 23.95 0.00 0.00 3.01
1652 2187 4.515191 TGGAGTGTTGTGATTCAAGTTAGC 59.485 41.667 0.00 0.00 36.66 3.09
1677 2212 6.149308 CACTTCAGTGGTTCAATTGCTGTATA 59.851 38.462 0.00 0.00 42.10 1.47
1680 2215 8.978874 TTCAGTGGTTCAATTGCTGTATATAT 57.021 30.769 0.00 0.00 0.00 0.86
1681 2216 8.607441 TCAGTGGTTCAATTGCTGTATATATC 57.393 34.615 0.00 0.00 0.00 1.63
1682 2217 8.432013 TCAGTGGTTCAATTGCTGTATATATCT 58.568 33.333 0.00 0.00 0.00 1.98
1683 2218 9.710900 CAGTGGTTCAATTGCTGTATATATCTA 57.289 33.333 0.00 0.00 0.00 1.98
1684 2219 9.712305 AGTGGTTCAATTGCTGTATATATCTAC 57.288 33.333 0.00 0.00 0.00 2.59
1685 2220 9.712305 GTGGTTCAATTGCTGTATATATCTACT 57.288 33.333 0.00 0.00 0.00 2.57
1686 2221 9.710900 TGGTTCAATTGCTGTATATATCTACTG 57.289 33.333 0.00 1.36 0.00 2.74
1687 2222 9.712305 GGTTCAATTGCTGTATATATCTACTGT 57.288 33.333 0.00 0.00 0.00 3.55
1705 2240 8.217131 TCTACTGTTTAAAGTTTCACCTTTCC 57.783 34.615 0.00 0.00 36.18 3.13
1713 2248 2.893489 AGTTTCACCTTTCCTCATTGGC 59.107 45.455 0.00 0.00 35.26 4.52
1902 2440 4.087182 ACTTCGATCCCTTCTCACTAACA 58.913 43.478 0.00 0.00 0.00 2.41
2088 2626 0.108520 CTGGCATTGGTGTTGATGGC 60.109 55.000 3.30 3.30 45.82 4.40
2121 2659 5.047377 GGATGGTTTGTTGGATAAGCTCAAA 60.047 40.000 0.00 0.00 0.00 2.69
2160 2700 6.711277 AGTATTGAACTCTGTTGCCTTGATA 58.289 36.000 0.00 0.00 30.33 2.15
2223 2763 6.912591 GCTGATTTAGTTGGTTATATGTGTGC 59.087 38.462 0.00 0.00 0.00 4.57
2378 2918 7.041167 TGGACTCATTAGAACAATGTTCAGTTG 60.041 37.037 25.63 18.38 0.00 3.16
2512 3134 4.630069 CGGGAATAATTATAGTGAAGCGGG 59.370 45.833 0.00 0.00 0.00 6.13
2644 3349 4.025563 GGGACCAAAAACAAAATAACGCAC 60.026 41.667 0.00 0.00 0.00 5.34
2766 3473 7.848223 TGACATGTCTTGTAATGTTATGGAG 57.152 36.000 25.55 0.00 39.18 3.86
2817 3524 9.801873 GCAAAGAAGTCCAAATATAGCATTTTA 57.198 29.630 0.00 0.00 0.00 1.52
2945 3659 5.869344 GGATGCACTTAAAGAAATCCAAACC 59.131 40.000 0.00 0.00 34.87 3.27
3156 3870 0.610232 GCTTTGCAGATCCTGGTGGT 60.610 55.000 0.00 0.00 34.23 4.16
3343 4060 2.262423 AGTGCTGGAGGAACTGAAAC 57.738 50.000 0.00 0.00 41.55 2.78
3352 4069 5.200483 TGGAGGAACTGAAACTGAATGTTT 58.800 37.500 0.00 0.00 46.19 2.83
3354 4071 5.979517 GGAGGAACTGAAACTGAATGTTTTG 59.020 40.000 0.00 0.00 44.41 2.44
3356 4073 7.035612 GAGGAACTGAAACTGAATGTTTTGTT 58.964 34.615 10.68 10.68 44.41 2.83
3365 4082 7.961325 AACTGAATGTTTTGTTTTGAACACT 57.039 28.000 0.00 0.00 41.97 3.55
3480 4199 8.941977 CGCATATCTCTATGTAAGTAAGACTCT 58.058 37.037 0.00 0.00 37.61 3.24
3640 4359 8.591072 TGCTACTGTAGTAAGGTTGTCTATTTT 58.409 33.333 15.71 0.00 0.00 1.82
3852 4571 1.201181 TGCAGCACGAGTTTTGTTGTT 59.799 42.857 0.00 0.00 0.00 2.83
4005 4724 7.964604 ACTGACTTTTACCAGTAATCTTGAC 57.035 36.000 0.00 0.00 41.38 3.18
4060 4779 4.592942 TGAATGTGCTAGGCTTGAAATCT 58.407 39.130 0.00 0.00 0.00 2.40
4101 4820 0.846693 ATGGGGTGGCCTGTAATCTC 59.153 55.000 3.32 0.00 0.00 2.75
4349 5068 1.262683 GCACTTGAGCACAGAACAGAC 59.737 52.381 0.00 0.00 0.00 3.51
4364 5083 2.872732 ACAGACGTTCCTGGACTTCTA 58.127 47.619 8.89 0.00 38.44 2.10
4485 5206 8.972127 TGAGATAGCTGAACTCTTTTAGTGTAT 58.028 33.333 14.38 0.00 38.88 2.29
4512 5233 3.078837 TGCTCATACGATGCTACCGATA 58.921 45.455 0.00 0.00 0.00 2.92
4513 5234 3.694566 TGCTCATACGATGCTACCGATAT 59.305 43.478 0.00 0.00 0.00 1.63
4726 5447 5.682234 TTGAGCTTGGTCTCAATCATAGA 57.318 39.130 2.43 0.00 45.21 1.98
4727 5448 5.682234 TGAGCTTGGTCTCAATCATAGAA 57.318 39.130 0.00 0.00 39.89 2.10
4728 5449 6.244552 TGAGCTTGGTCTCAATCATAGAAT 57.755 37.500 0.00 0.00 39.89 2.40
4729 5450 6.286758 TGAGCTTGGTCTCAATCATAGAATC 58.713 40.000 0.00 0.00 39.89 2.52
4730 5451 6.126968 TGAGCTTGGTCTCAATCATAGAATCA 60.127 38.462 0.00 0.00 39.89 2.57
4739 5495 8.816144 GTCTCAATCATAGAATCAGAACTTGTC 58.184 37.037 0.00 0.00 0.00 3.18
4744 5500 7.340122 TCATAGAATCAGAACTTGTCGAGAT 57.660 36.000 0.00 0.00 0.00 2.75
4749 5505 0.798771 AGAACTTGTCGAGATCGCGC 60.799 55.000 14.47 9.84 39.60 6.86
4775 5531 2.791158 GCGATTTCGGTTGCATTCGAAT 60.791 45.455 20.12 4.39 43.49 3.34
4855 5611 6.038382 ACAGAAAGCAAAGATCATCTATGCTG 59.962 38.462 10.20 0.00 45.95 4.41
4856 5612 6.038382 CAGAAAGCAAAGATCATCTATGCTGT 59.962 38.462 10.20 6.18 45.95 4.40
4858 5614 5.032327 AGCAAAGATCATCTATGCTGTCA 57.968 39.130 9.09 0.00 45.03 3.58
4859 5615 4.815308 AGCAAAGATCATCTATGCTGTCAC 59.185 41.667 9.09 0.00 45.03 3.67
4860 5616 4.815308 GCAAAGATCATCTATGCTGTCACT 59.185 41.667 0.00 0.00 34.29 3.41
4861 5617 5.987953 GCAAAGATCATCTATGCTGTCACTA 59.012 40.000 0.00 0.00 34.29 2.74
4862 5618 6.073873 GCAAAGATCATCTATGCTGTCACTAC 60.074 42.308 0.00 0.00 34.29 2.73
4874 5630 3.119316 GCTGTCACTACTCACTACTGCAT 60.119 47.826 0.00 0.00 35.74 3.96
5064 5829 1.365699 CAAAAATGCAGAGCCATGCC 58.634 50.000 8.16 0.00 45.91 4.40
5092 5857 6.589830 TGCAGAATAGCGAAAAATCTCTAC 57.410 37.500 0.00 0.00 37.31 2.59
5094 5859 7.489160 TGCAGAATAGCGAAAAATCTCTACTA 58.511 34.615 0.00 0.00 37.31 1.82
5095 5860 8.144478 TGCAGAATAGCGAAAAATCTCTACTAT 58.856 33.333 0.00 0.00 37.31 2.12
5096 5861 8.983724 GCAGAATAGCGAAAAATCTCTACTATT 58.016 33.333 0.00 0.00 32.94 1.73
5161 6150 5.056480 CCTCCCACCAATTTTCTTTCAAAC 58.944 41.667 0.00 0.00 0.00 2.93
5176 6165 5.306678 TCTTTCAAACCATGCAATAACCCTT 59.693 36.000 0.00 0.00 0.00 3.95
5266 6255 8.372521 GCAATCAACGAAAATCAAATAAATCGT 58.627 29.630 0.00 0.00 44.43 3.73
5291 6280 9.899226 GTCAATAGAAAGAAATTACTTGCAGTT 57.101 29.630 0.00 0.00 0.00 3.16
5370 6361 3.455910 TCCTTCCCCACAACATATCTCAG 59.544 47.826 0.00 0.00 0.00 3.35
5381 6372 7.360691 CCACAACATATCTCAGTTTCAACTCAG 60.361 40.741 0.00 0.00 37.08 3.35
5385 6376 9.778741 AACATATCTCAGTTTCAACTCAGTTAA 57.221 29.630 0.00 0.00 37.08 2.01
5423 6415 9.975218 ACATTGGACCATTAGAATAAAACTAGT 57.025 29.630 0.00 0.00 0.00 2.57
5437 6429 9.494479 GAATAAAACTAGTAAAAATACCCGTGC 57.506 33.333 0.00 0.00 0.00 5.34
5438 6430 5.535043 AAACTAGTAAAAATACCCGTGCG 57.465 39.130 0.00 0.00 0.00 5.34
5439 6431 4.192429 ACTAGTAAAAATACCCGTGCGT 57.808 40.909 0.00 0.00 0.00 5.24
5440 6432 4.568956 ACTAGTAAAAATACCCGTGCGTT 58.431 39.130 0.00 0.00 0.00 4.84
5441 6433 3.817148 AGTAAAAATACCCGTGCGTTG 57.183 42.857 0.00 0.00 0.00 4.10
5442 6434 2.095617 AGTAAAAATACCCGTGCGTTGC 60.096 45.455 0.00 0.00 0.00 4.17
5443 6435 0.669077 AAAAATACCCGTGCGTTGCA 59.331 45.000 0.00 0.00 35.60 4.08
5444 6436 0.669077 AAAATACCCGTGCGTTGCAA 59.331 45.000 0.00 0.00 41.47 4.08
5445 6437 0.039888 AAATACCCGTGCGTTGCAAC 60.040 50.000 19.89 19.89 41.47 4.17
5459 6451 4.499037 GTTGCAACGGGAGAAAATAAGT 57.501 40.909 14.90 0.00 0.00 2.24
5460 6452 4.866921 GTTGCAACGGGAGAAAATAAGTT 58.133 39.130 14.90 0.00 0.00 2.66
5461 6453 6.004408 GTTGCAACGGGAGAAAATAAGTTA 57.996 37.500 14.90 0.00 0.00 2.24
5462 6454 6.440436 GTTGCAACGGGAGAAAATAAGTTAA 58.560 36.000 14.90 0.00 0.00 2.01
5463 6455 6.004408 TGCAACGGGAGAAAATAAGTTAAC 57.996 37.500 0.00 0.00 0.00 2.01
5464 6456 5.084055 GCAACGGGAGAAAATAAGTTAACG 58.916 41.667 0.00 0.00 0.00 3.18
5465 6457 5.334337 GCAACGGGAGAAAATAAGTTAACGT 60.334 40.000 0.00 0.00 0.00 3.99
5466 6458 5.851047 ACGGGAGAAAATAAGTTAACGTG 57.149 39.130 4.15 0.00 0.00 4.49
5467 6459 4.152938 ACGGGAGAAAATAAGTTAACGTGC 59.847 41.667 4.15 0.00 0.00 5.34
5468 6460 4.390909 CGGGAGAAAATAAGTTAACGTGCT 59.609 41.667 4.15 0.00 0.00 4.40
5469 6461 5.106830 CGGGAGAAAATAAGTTAACGTGCTT 60.107 40.000 4.15 0.00 0.00 3.91
5470 6462 6.312487 GGGAGAAAATAAGTTAACGTGCTTC 58.688 40.000 4.15 4.59 0.00 3.86
5471 6463 6.013689 GGAGAAAATAAGTTAACGTGCTTCG 58.986 40.000 4.15 0.84 46.00 3.79
5490 6482 5.866335 TTCGTTACGAAGCAAATACCAAT 57.134 34.783 16.56 0.00 41.05 3.16
5491 6483 6.964741 TTCGTTACGAAGCAAATACCAATA 57.035 33.333 16.56 0.00 41.05 1.90
5492 6484 6.964741 TCGTTACGAAGCAAATACCAATAA 57.035 33.333 4.50 0.00 31.06 1.40
5493 6485 7.542534 TCGTTACGAAGCAAATACCAATAAT 57.457 32.000 4.50 0.00 31.06 1.28
5494 6486 7.976826 TCGTTACGAAGCAAATACCAATAATT 58.023 30.769 4.50 0.00 31.06 1.40
5495 6487 8.117988 TCGTTACGAAGCAAATACCAATAATTC 58.882 33.333 4.50 0.00 31.06 2.17
5496 6488 7.375017 CGTTACGAAGCAAATACCAATAATTCC 59.625 37.037 0.00 0.00 0.00 3.01
5497 6489 6.767524 ACGAAGCAAATACCAATAATTCCA 57.232 33.333 0.00 0.00 0.00 3.53
5498 6490 7.164230 ACGAAGCAAATACCAATAATTCCAA 57.836 32.000 0.00 0.00 0.00 3.53
5499 6491 7.781056 ACGAAGCAAATACCAATAATTCCAAT 58.219 30.769 0.00 0.00 0.00 3.16
5500 6492 8.257306 ACGAAGCAAATACCAATAATTCCAATT 58.743 29.630 0.00 0.00 0.00 2.32
5501 6493 9.743057 CGAAGCAAATACCAATAATTCCAATTA 57.257 29.630 0.00 0.00 35.52 1.40
5504 6496 9.212593 AGCAAATACCAATAATTCCAATTAGGT 57.787 29.630 7.68 7.68 39.02 3.08
5505 6497 9.830975 GCAAATACCAATAATTCCAATTAGGTT 57.169 29.630 7.81 0.00 39.02 3.50
5518 6510 5.520376 CAATTAGGTTGGCCAGATAAAGG 57.480 43.478 5.11 0.32 37.19 3.11
5519 6511 5.200483 CAATTAGGTTGGCCAGATAAAGGA 58.800 41.667 5.11 0.00 37.19 3.36
5520 6512 5.669798 ATTAGGTTGGCCAGATAAAGGAT 57.330 39.130 5.11 0.00 37.19 3.24
5521 6513 6.780198 ATTAGGTTGGCCAGATAAAGGATA 57.220 37.500 5.11 0.00 37.19 2.59
5522 6514 6.584471 TTAGGTTGGCCAGATAAAGGATAA 57.416 37.500 5.11 0.00 37.19 1.75
5523 6515 5.053978 AGGTTGGCCAGATAAAGGATAAG 57.946 43.478 5.11 0.00 37.19 1.73
5524 6516 4.478686 AGGTTGGCCAGATAAAGGATAAGT 59.521 41.667 5.11 0.00 37.19 2.24
5525 6517 5.044105 AGGTTGGCCAGATAAAGGATAAGTT 60.044 40.000 5.11 0.00 37.19 2.66
5526 6518 5.656859 GGTTGGCCAGATAAAGGATAAGTTT 59.343 40.000 5.11 0.00 34.09 2.66
5527 6519 6.405842 GGTTGGCCAGATAAAGGATAAGTTTG 60.406 42.308 5.11 0.00 34.09 2.93
5528 6520 6.073447 TGGCCAGATAAAGGATAAGTTTGA 57.927 37.500 0.00 0.00 0.00 2.69
5529 6521 6.672593 TGGCCAGATAAAGGATAAGTTTGAT 58.327 36.000 0.00 0.00 0.00 2.57
5530 6522 6.547141 TGGCCAGATAAAGGATAAGTTTGATG 59.453 38.462 0.00 0.00 0.00 3.07
5531 6523 6.772716 GGCCAGATAAAGGATAAGTTTGATGA 59.227 38.462 0.00 0.00 0.00 2.92
5532 6524 7.449704 GGCCAGATAAAGGATAAGTTTGATGAT 59.550 37.037 0.00 0.00 0.00 2.45
5533 6525 8.854117 GCCAGATAAAGGATAAGTTTGATGATT 58.146 33.333 0.00 0.00 0.00 2.57
5540 6532 7.865706 AGGATAAGTTTGATGATTACACACC 57.134 36.000 0.00 0.00 0.00 4.16
5541 6533 7.402054 AGGATAAGTTTGATGATTACACACCA 58.598 34.615 0.00 0.00 0.00 4.17
5542 6534 7.336931 AGGATAAGTTTGATGATTACACACCAC 59.663 37.037 0.00 0.00 0.00 4.16
5543 6535 7.120579 GGATAAGTTTGATGATTACACACCACA 59.879 37.037 0.00 0.00 0.00 4.17
5544 6536 6.899393 AAGTTTGATGATTACACACCACAT 57.101 33.333 0.00 0.00 0.00 3.21
5545 6537 6.899393 AGTTTGATGATTACACACCACATT 57.101 33.333 0.00 0.00 0.00 2.71
5546 6538 7.288810 AGTTTGATGATTACACACCACATTT 57.711 32.000 0.00 0.00 0.00 2.32
5547 6539 7.725251 AGTTTGATGATTACACACCACATTTT 58.275 30.769 0.00 0.00 0.00 1.82
5548 6540 8.203485 AGTTTGATGATTACACACCACATTTTT 58.797 29.630 0.00 0.00 0.00 1.94
5549 6541 8.487176 GTTTGATGATTACACACCACATTTTTC 58.513 33.333 0.00 0.00 0.00 2.29
5550 6542 6.377780 TGATGATTACACACCACATTTTTCG 58.622 36.000 0.00 0.00 0.00 3.46
5551 6543 5.759506 TGATTACACACCACATTTTTCGT 57.240 34.783 0.00 0.00 0.00 3.85
5552 6544 5.753744 TGATTACACACCACATTTTTCGTC 58.246 37.500 0.00 0.00 0.00 4.20
5553 6545 5.529430 TGATTACACACCACATTTTTCGTCT 59.471 36.000 0.00 0.00 0.00 4.18
5554 6546 3.691049 ACACACCACATTTTTCGTCTG 57.309 42.857 0.00 0.00 0.00 3.51
5555 6547 3.275143 ACACACCACATTTTTCGTCTGA 58.725 40.909 0.00 0.00 0.00 3.27
5556 6548 3.064820 ACACACCACATTTTTCGTCTGAC 59.935 43.478 0.00 0.00 0.00 3.51
5557 6549 3.312421 CACACCACATTTTTCGTCTGACT 59.688 43.478 6.21 0.00 0.00 3.41
5558 6550 3.560068 ACACCACATTTTTCGTCTGACTC 59.440 43.478 6.21 0.00 0.00 3.36
5559 6551 3.559655 CACCACATTTTTCGTCTGACTCA 59.440 43.478 6.21 0.00 0.00 3.41
5560 6552 3.809832 ACCACATTTTTCGTCTGACTCAG 59.190 43.478 6.21 0.00 0.00 3.35
5561 6553 3.809832 CCACATTTTTCGTCTGACTCAGT 59.190 43.478 6.21 0.00 32.61 3.41
5562 6554 4.988540 CCACATTTTTCGTCTGACTCAGTA 59.011 41.667 6.21 0.00 32.61 2.74
5563 6555 5.639506 CCACATTTTTCGTCTGACTCAGTAT 59.360 40.000 6.21 0.00 32.61 2.12
5564 6556 6.811665 CCACATTTTTCGTCTGACTCAGTATA 59.188 38.462 6.21 0.00 32.61 1.47
5565 6557 7.330946 CCACATTTTTCGTCTGACTCAGTATAA 59.669 37.037 6.21 0.00 32.61 0.98
5566 6558 8.162880 CACATTTTTCGTCTGACTCAGTATAAC 58.837 37.037 6.21 0.00 32.61 1.89
5567 6559 6.922980 TTTTTCGTCTGACTCAGTATAACG 57.077 37.500 6.21 10.36 32.07 3.18
5568 6560 5.618056 TTTCGTCTGACTCAGTATAACGT 57.382 39.130 14.33 0.00 32.47 3.99
5569 6561 5.618056 TTCGTCTGACTCAGTATAACGTT 57.382 39.130 5.88 5.88 32.47 3.99
5570 6562 4.966249 TCGTCTGACTCAGTATAACGTTG 58.034 43.478 11.99 0.00 32.47 4.10
5571 6563 4.453478 TCGTCTGACTCAGTATAACGTTGT 59.547 41.667 11.99 6.97 32.47 3.32
5572 6564 5.639082 TCGTCTGACTCAGTATAACGTTGTA 59.361 40.000 11.99 5.74 32.47 2.41
5573 6565 5.958372 CGTCTGACTCAGTATAACGTTGTAG 59.042 44.000 11.99 0.75 32.61 2.74
5574 6566 6.183360 CGTCTGACTCAGTATAACGTTGTAGA 60.183 42.308 11.99 2.57 32.61 2.59
5575 6567 7.465647 CGTCTGACTCAGTATAACGTTGTAGAT 60.466 40.741 11.99 0.00 32.61 1.98
5576 6568 7.851963 GTCTGACTCAGTATAACGTTGTAGATC 59.148 40.741 11.99 3.07 32.61 2.75
5577 6569 7.551617 TCTGACTCAGTATAACGTTGTAGATCA 59.448 37.037 11.99 7.15 32.61 2.92
5578 6570 7.694886 TGACTCAGTATAACGTTGTAGATCAG 58.305 38.462 11.99 5.09 0.00 2.90
5579 6571 7.551617 TGACTCAGTATAACGTTGTAGATCAGA 59.448 37.037 11.99 0.00 0.00 3.27
5580 6572 8.453238 ACTCAGTATAACGTTGTAGATCAGAT 57.547 34.615 11.99 0.00 0.00 2.90
5581 6573 8.561212 ACTCAGTATAACGTTGTAGATCAGATC 58.439 37.037 11.99 1.64 0.00 2.75
5582 6574 7.573627 TCAGTATAACGTTGTAGATCAGATCG 58.426 38.462 11.99 0.00 0.00 3.69
5583 6575 7.226128 TCAGTATAACGTTGTAGATCAGATCGT 59.774 37.037 11.99 0.00 33.89 3.73
5584 6576 7.531198 CAGTATAACGTTGTAGATCAGATCGTC 59.469 40.741 11.99 3.29 32.83 4.20
5585 6577 3.320733 ACGTTGTAGATCAGATCGTCG 57.679 47.619 4.67 8.83 0.00 5.12
5586 6578 2.934553 ACGTTGTAGATCAGATCGTCGA 59.065 45.455 4.67 0.00 0.00 4.20
5587 6579 3.560481 ACGTTGTAGATCAGATCGTCGAT 59.440 43.478 7.63 7.63 0.00 3.59
5588 6580 3.903054 CGTTGTAGATCAGATCGTCGATG 59.097 47.826 13.54 0.31 0.00 3.84
5589 6581 3.544356 TGTAGATCAGATCGTCGATGC 57.456 47.619 13.54 4.61 0.00 3.91
5590 6582 2.226674 TGTAGATCAGATCGTCGATGCC 59.773 50.000 13.54 0.00 0.00 4.40
5591 6583 1.322442 AGATCAGATCGTCGATGCCA 58.678 50.000 13.54 0.00 0.00 4.92
5592 6584 1.269174 AGATCAGATCGTCGATGCCAG 59.731 52.381 13.54 0.00 0.00 4.85
5593 6585 0.316522 ATCAGATCGTCGATGCCAGG 59.683 55.000 13.54 0.00 0.00 4.45
5594 6586 1.037579 TCAGATCGTCGATGCCAGGT 61.038 55.000 13.54 0.00 0.00 4.00
5595 6587 0.873312 CAGATCGTCGATGCCAGGTG 60.873 60.000 13.54 0.00 0.00 4.00
5596 6588 1.037579 AGATCGTCGATGCCAGGTGA 61.038 55.000 13.54 0.00 0.00 4.02
5597 6589 0.179111 GATCGTCGATGCCAGGTGAA 60.179 55.000 13.54 0.00 0.00 3.18
5598 6590 0.249120 ATCGTCGATGCCAGGTGAAA 59.751 50.000 7.00 0.00 0.00 2.69
5599 6591 0.034198 TCGTCGATGCCAGGTGAAAA 59.966 50.000 0.00 0.00 0.00 2.29
5600 6592 0.871722 CGTCGATGCCAGGTGAAAAA 59.128 50.000 0.00 0.00 0.00 1.94
5628 6620 8.732746 ACCACACCAGATTATTAATTGTAGTC 57.267 34.615 0.00 0.00 0.00 2.59
5629 6621 8.548877 ACCACACCAGATTATTAATTGTAGTCT 58.451 33.333 0.00 0.00 0.00 3.24
5630 6622 9.046296 CCACACCAGATTATTAATTGTAGTCTC 57.954 37.037 0.00 0.00 0.00 3.36
5631 6623 9.823647 CACACCAGATTATTAATTGTAGTCTCT 57.176 33.333 0.00 0.00 0.00 3.10
5658 6650 6.956299 AGACAATAAAAATGTTGAGCATGC 57.044 33.333 10.51 10.51 37.96 4.06
5659 6651 6.457355 AGACAATAAAAATGTTGAGCATGCA 58.543 32.000 21.98 0.00 37.96 3.96
5660 6652 6.930164 AGACAATAAAAATGTTGAGCATGCAA 59.070 30.769 21.98 4.48 37.96 4.08
5661 6653 7.604927 AGACAATAAAAATGTTGAGCATGCAAT 59.395 29.630 21.98 0.00 37.96 3.56
5662 6654 8.774890 ACAATAAAAATGTTGAGCATGCAATA 57.225 26.923 21.98 4.98 37.96 1.90
5663 6655 8.658609 ACAATAAAAATGTTGAGCATGCAATAC 58.341 29.630 21.98 14.12 37.96 1.89
5664 6656 8.875803 CAATAAAAATGTTGAGCATGCAATACT 58.124 29.630 21.98 0.00 37.96 2.12
5665 6657 9.439500 AATAAAAATGTTGAGCATGCAATACTT 57.561 25.926 21.98 9.25 37.96 2.24
5666 6658 7.733402 AAAAATGTTGAGCATGCAATACTTT 57.267 28.000 21.98 14.27 37.96 2.66
5667 6659 6.956299 AAATGTTGAGCATGCAATACTTTC 57.044 33.333 21.98 7.20 37.96 2.62
5668 6660 5.648178 ATGTTGAGCATGCAATACTTTCA 57.352 34.783 21.98 10.02 36.26 2.69
5669 6661 5.450592 TGTTGAGCATGCAATACTTTCAA 57.549 34.783 21.98 15.63 0.00 2.69
5670 6662 5.463286 TGTTGAGCATGCAATACTTTCAAG 58.537 37.500 21.98 0.00 0.00 3.02
5671 6663 4.707030 TGAGCATGCAATACTTTCAAGG 57.293 40.909 21.98 0.00 0.00 3.61
5672 6664 4.081406 TGAGCATGCAATACTTTCAAGGT 58.919 39.130 21.98 0.00 0.00 3.50
5673 6665 5.252547 TGAGCATGCAATACTTTCAAGGTA 58.747 37.500 21.98 0.00 0.00 3.08
5674 6666 5.887598 TGAGCATGCAATACTTTCAAGGTAT 59.112 36.000 21.98 0.00 0.00 2.73
5675 6667 6.377996 TGAGCATGCAATACTTTCAAGGTATT 59.622 34.615 21.98 0.00 39.53 1.89
5676 6668 7.093814 TGAGCATGCAATACTTTCAAGGTATTT 60.094 33.333 21.98 0.00 37.65 1.40
5677 6669 7.614494 AGCATGCAATACTTTCAAGGTATTTT 58.386 30.769 21.98 0.00 37.65 1.82
5678 6670 8.096414 AGCATGCAATACTTTCAAGGTATTTTT 58.904 29.630 21.98 0.00 37.65 1.94
5679 6671 9.364989 GCATGCAATACTTTCAAGGTATTTTTA 57.635 29.630 14.21 0.00 37.65 1.52
5681 6673 9.869757 ATGCAATACTTTCAAGGTATTTTTACC 57.130 29.630 2.20 0.00 37.65 2.85
5692 6684 5.813080 GGTATTTTTACCTCGATGCAGTT 57.187 39.130 0.00 0.00 37.16 3.16
5693 6685 5.569413 GGTATTTTTACCTCGATGCAGTTG 58.431 41.667 0.00 0.00 37.16 3.16
5694 6686 5.123344 GGTATTTTTACCTCGATGCAGTTGT 59.877 40.000 0.00 0.00 37.16 3.32
5695 6687 5.705609 ATTTTTACCTCGATGCAGTTGTT 57.294 34.783 0.00 0.00 0.00 2.83
5696 6688 4.481930 TTTTACCTCGATGCAGTTGTTG 57.518 40.909 0.00 0.00 0.00 3.33
5697 6689 2.831685 TACCTCGATGCAGTTGTTGT 57.168 45.000 0.00 0.00 0.00 3.32
5698 6690 1.967319 ACCTCGATGCAGTTGTTGTT 58.033 45.000 0.00 0.00 0.00 2.83
5699 6691 1.603802 ACCTCGATGCAGTTGTTGTTG 59.396 47.619 0.00 0.00 0.00 3.33
5700 6692 1.603802 CCTCGATGCAGTTGTTGTTGT 59.396 47.619 0.00 0.00 0.00 3.32
5701 6693 2.033299 CCTCGATGCAGTTGTTGTTGTT 59.967 45.455 0.00 0.00 0.00 2.83
5702 6694 3.291585 CTCGATGCAGTTGTTGTTGTTC 58.708 45.455 0.00 0.00 0.00 3.18
5703 6695 2.032799 TCGATGCAGTTGTTGTTGTTCC 59.967 45.455 0.00 0.00 0.00 3.62
5704 6696 2.033299 CGATGCAGTTGTTGTTGTTCCT 59.967 45.455 0.00 0.00 0.00 3.36
5705 6697 3.632189 GATGCAGTTGTTGTTGTTCCTC 58.368 45.455 0.00 0.00 0.00 3.71
5706 6698 1.748493 TGCAGTTGTTGTTGTTCCTCC 59.252 47.619 0.00 0.00 0.00 4.30
5707 6699 1.748493 GCAGTTGTTGTTGTTCCTCCA 59.252 47.619 0.00 0.00 0.00 3.86
5708 6700 2.362077 GCAGTTGTTGTTGTTCCTCCAT 59.638 45.455 0.00 0.00 0.00 3.41
5709 6701 3.568007 GCAGTTGTTGTTGTTCCTCCATA 59.432 43.478 0.00 0.00 0.00 2.74
5710 6702 4.320494 GCAGTTGTTGTTGTTCCTCCATAG 60.320 45.833 0.00 0.00 0.00 2.23
5711 6703 3.821033 AGTTGTTGTTGTTCCTCCATAGC 59.179 43.478 0.00 0.00 0.00 2.97
5712 6704 3.500448 TGTTGTTGTTCCTCCATAGCA 57.500 42.857 0.00 0.00 0.00 3.49
5713 6705 4.032960 TGTTGTTGTTCCTCCATAGCAT 57.967 40.909 0.00 0.00 0.00 3.79
5714 6706 4.009675 TGTTGTTGTTCCTCCATAGCATC 58.990 43.478 0.00 0.00 0.00 3.91
5715 6707 3.998913 TGTTGTTCCTCCATAGCATCA 57.001 42.857 0.00 0.00 0.00 3.07
5716 6708 4.299586 TGTTGTTCCTCCATAGCATCAA 57.700 40.909 0.00 0.00 0.00 2.57
5717 6709 4.858850 TGTTGTTCCTCCATAGCATCAAT 58.141 39.130 0.00 0.00 0.00 2.57
5718 6710 4.641541 TGTTGTTCCTCCATAGCATCAATG 59.358 41.667 0.00 0.00 0.00 2.82
5719 6711 4.508551 TGTTCCTCCATAGCATCAATGT 57.491 40.909 0.00 0.00 0.00 2.71
5720 6712 4.858850 TGTTCCTCCATAGCATCAATGTT 58.141 39.130 0.00 0.00 0.00 2.71
5721 6713 5.263599 TGTTCCTCCATAGCATCAATGTTT 58.736 37.500 0.00 0.00 0.00 2.83
5722 6714 5.125900 TGTTCCTCCATAGCATCAATGTTTG 59.874 40.000 0.00 0.00 0.00 2.93
5723 6715 4.209538 TCCTCCATAGCATCAATGTTTGG 58.790 43.478 0.00 0.00 0.00 3.28
5724 6716 3.319972 CCTCCATAGCATCAATGTTTGGG 59.680 47.826 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.288576 AGAATCAAACAAATACTCACAAGATCA 57.711 29.630 0.00 0.00 0.00 2.92
44 45 8.863086 AGGATCATCTTCAAAGAATCAAACAAA 58.137 29.630 0.00 0.00 38.77 2.83
59 60 7.600375 TCAATCAACGCTTATAGGATCATCTTC 59.400 37.037 0.00 0.00 0.00 2.87
192 195 4.903045 ATTAAGAGTTGAGGGACGGAAA 57.097 40.909 0.00 0.00 0.00 3.13
195 198 5.009811 CCTAGTATTAAGAGTTGAGGGACGG 59.990 48.000 0.00 0.00 0.00 4.79
216 219 4.587684 GCTGCAAGGGACTAACTATACCTA 59.412 45.833 0.00 0.00 38.49 3.08
282 286 4.829872 ACAATGATGATGTGGCCAAAAT 57.170 36.364 7.24 3.93 0.00 1.82
296 300 3.463329 ACCCTATGCCACCTTACAATGAT 59.537 43.478 0.00 0.00 0.00 2.45
300 304 1.208535 CGACCCTATGCCACCTTACAA 59.791 52.381 0.00 0.00 0.00 2.41
316 320 2.299993 TCTCTCAATGACATGCGACC 57.700 50.000 0.00 0.00 0.00 4.79
396 538 6.494952 AGATCCGATATACCACCTATTGTCT 58.505 40.000 0.00 0.00 0.00 3.41
430 572 1.102978 GTGCTCCTGTCTCTCTCCTC 58.897 60.000 0.00 0.00 0.00 3.71
431 573 0.407528 TGTGCTCCTGTCTCTCTCCT 59.592 55.000 0.00 0.00 0.00 3.69
434 576 2.094286 CGAATTGTGCTCCTGTCTCTCT 60.094 50.000 0.00 0.00 0.00 3.10
441 583 1.699656 CTCGGCGAATTGTGCTCCTG 61.700 60.000 12.13 0.00 0.00 3.86
500 642 0.450482 GCACGGTTTTGATCACGTCG 60.450 55.000 6.15 5.89 37.48 5.12
503 645 0.521291 ATGGCACGGTTTTGATCACG 59.479 50.000 0.00 0.00 0.00 4.35
543 685 3.322254 CCTAACATGAGTATTCCTCGGCT 59.678 47.826 0.00 0.00 43.64 5.52
544 686 3.555168 CCCTAACATGAGTATTCCTCGGC 60.555 52.174 0.00 0.00 43.64 5.54
585 727 3.113260 ACTTTTGTCCCTCGACTCTTG 57.887 47.619 0.00 0.00 39.94 3.02
614 756 7.894708 TGATGTGTCATTGTTTTGACCATATT 58.105 30.769 2.43 0.00 44.37 1.28
617 759 5.787953 TGATGTGTCATTGTTTTGACCAT 57.212 34.783 2.43 5.51 44.37 3.55
651 793 6.202954 CGTAGTGATATTCCTCAATCAAACCC 59.797 42.308 0.00 0.00 34.06 4.11
659 801 4.583489 GTCCCTCGTAGTGATATTCCTCAA 59.417 45.833 0.00 0.00 0.00 3.02
660 802 4.141228 AGTCCCTCGTAGTGATATTCCTCA 60.141 45.833 0.00 0.00 0.00 3.86
669 811 6.430962 AGTATGTATAGTCCCTCGTAGTGA 57.569 41.667 0.00 0.00 0.00 3.41
685 827 6.131961 GTCCCCCAACTCTACTAAGTATGTA 58.868 44.000 0.00 0.00 0.00 2.29
692 834 2.905415 TCGTCCCCCAACTCTACTAA 57.095 50.000 0.00 0.00 0.00 2.24
695 1144 1.553706 TCTTCGTCCCCCAACTCTAC 58.446 55.000 0.00 0.00 0.00 2.59
728 1196 7.414540 CCAAGTGTGGCTTTCATATCTAAACTC 60.415 40.741 0.00 0.00 38.35 3.01
753 1223 6.753744 GCTTTTTCATCCATCAACTAATCACC 59.246 38.462 0.00 0.00 0.00 4.02
755 1225 7.177216 AGTGCTTTTTCATCCATCAACTAATCA 59.823 33.333 0.00 0.00 0.00 2.57
766 1264 6.959639 AGAGTAAAAGTGCTTTTTCATCCA 57.040 33.333 14.08 0.00 42.22 3.41
860 1362 7.739825 TGAAATTCTTCTCTTCTCCTTCTCAA 58.260 34.615 0.00 0.00 32.33 3.02
861 1363 7.308450 TGAAATTCTTCTCTTCTCCTTCTCA 57.692 36.000 0.00 0.00 32.33 3.27
862 1364 8.614469 TTTGAAATTCTTCTCTTCTCCTTCTC 57.386 34.615 0.00 0.00 32.33 2.87
864 1366 9.061435 TCTTTTGAAATTCTTCTCTTCTCCTTC 57.939 33.333 0.00 0.00 32.33 3.46
896 1424 4.762809 CGGTTCTTCAGTTTCTCTTTTCG 58.237 43.478 0.00 0.00 0.00 3.46
985 1513 3.133721 AGCAACTCTGGATGGATGTACTC 59.866 47.826 0.00 0.00 0.00 2.59
987 1515 3.118629 TGAGCAACTCTGGATGGATGTAC 60.119 47.826 0.00 0.00 0.00 2.90
988 1516 3.106827 TGAGCAACTCTGGATGGATGTA 58.893 45.455 0.00 0.00 0.00 2.29
989 1517 1.911357 TGAGCAACTCTGGATGGATGT 59.089 47.619 0.00 0.00 0.00 3.06
1032 1560 2.408241 GGGAGTCCAGTCGAGGTCG 61.408 68.421 12.30 0.00 41.45 4.79
1033 1561 0.612453 AAGGGAGTCCAGTCGAGGTC 60.612 60.000 12.30 0.00 34.83 3.85
1034 1562 0.612453 GAAGGGAGTCCAGTCGAGGT 60.612 60.000 12.30 0.00 34.83 3.85
1035 1563 1.658686 CGAAGGGAGTCCAGTCGAGG 61.659 65.000 22.80 0.48 42.10 4.63
1359 1887 4.099170 CGAAGGAGACGACGCGGT 62.099 66.667 12.47 0.00 0.00 5.68
1500 2028 4.835056 AGAAAGACCCCCAAATCAAGAAAG 59.165 41.667 0.00 0.00 0.00 2.62
1503 2031 4.567747 GCTAGAAAGACCCCCAAATCAAGA 60.568 45.833 0.00 0.00 0.00 3.02
1531 2059 3.842925 GAAGGGTGCAGTTCGGGCA 62.843 63.158 0.00 0.00 39.32 5.36
1536 2064 0.329596 ATCAGGGAAGGGTGCAGTTC 59.670 55.000 0.00 0.00 0.00 3.01
1547 2075 2.551270 AGGCACTAACAGATCAGGGAA 58.449 47.619 0.00 0.00 36.02 3.97
1565 2093 6.546428 TCCAAGGTAGAACAATCTAGAAGG 57.454 41.667 0.00 0.00 38.82 3.46
1571 2099 6.995091 GCATCTATTCCAAGGTAGAACAATCT 59.005 38.462 0.00 0.00 39.82 2.40
1606 2141 0.865769 GTCCACAAACCAGTACTGCG 59.134 55.000 17.86 12.86 0.00 5.18
1612 2147 1.843851 TCCAGAAGTCCACAAACCAGT 59.156 47.619 0.00 0.00 0.00 4.00
1617 2152 3.278574 CAACACTCCAGAAGTCCACAAA 58.721 45.455 0.00 0.00 35.45 2.83
1628 2163 5.334414 GCTAACTTGAATCACAACACTCCAG 60.334 44.000 0.00 0.00 34.56 3.86
1652 2187 3.067180 ACAGCAATTGAACCACTGAAGTG 59.933 43.478 10.34 3.35 45.23 3.16
1680 2215 8.050930 AGGAAAGGTGAAACTTTAAACAGTAGA 58.949 33.333 0.00 0.00 40.55 2.59
1681 2216 8.221965 AGGAAAGGTGAAACTTTAAACAGTAG 57.778 34.615 0.00 0.00 40.55 2.57
1682 2217 7.830201 TGAGGAAAGGTGAAACTTTAAACAGTA 59.170 33.333 0.00 0.00 40.55 2.74
1683 2218 6.661805 TGAGGAAAGGTGAAACTTTAAACAGT 59.338 34.615 0.00 0.00 40.55 3.55
1684 2219 7.095695 TGAGGAAAGGTGAAACTTTAAACAG 57.904 36.000 0.00 0.00 40.55 3.16
1685 2220 7.654022 ATGAGGAAAGGTGAAACTTTAAACA 57.346 32.000 0.00 0.00 40.55 2.83
1686 2221 7.438160 CCAATGAGGAAAGGTGAAACTTTAAAC 59.562 37.037 0.00 0.00 40.55 2.01
1687 2222 7.496747 CCAATGAGGAAAGGTGAAACTTTAAA 58.503 34.615 0.00 0.00 40.55 1.52
1705 2240 2.642139 AATCAAACAGCGCCAATGAG 57.358 45.000 2.29 0.00 0.00 2.90
1713 2248 2.532531 ATGAGCGAAATCAAACAGCG 57.467 45.000 0.00 0.00 31.76 5.18
1902 2440 3.981071 TCCTTGTCATCACCTTCGAAT 57.019 42.857 0.00 0.00 0.00 3.34
2107 2645 4.079253 GGTCCAGTTTTGAGCTTATCCAA 58.921 43.478 0.00 0.00 0.00 3.53
2121 2659 3.650942 TCAATACTCACAAGGGTCCAGTT 59.349 43.478 0.00 0.00 0.00 3.16
2156 2696 5.754782 ACACATTACTTGGCCATTCTATCA 58.245 37.500 6.09 0.00 0.00 2.15
2160 2700 3.009723 CGACACATTACTTGGCCATTCT 58.990 45.455 6.09 0.00 0.00 2.40
2223 2763 9.838339 AGTATCTATCCAAAACCTTCACAATAG 57.162 33.333 0.00 0.00 0.00 1.73
2378 2918 9.262358 CAGTTATATAGAGTAAAAAGGAGTGGC 57.738 37.037 0.00 0.00 0.00 5.01
2425 2970 7.587037 TCAAGAGGTCATTTTTCATCAACTT 57.413 32.000 0.00 0.00 0.00 2.66
2644 3349 7.518161 TCAACGATCACTTGCTTTATACTTTG 58.482 34.615 0.00 0.00 0.00 2.77
2766 3473 5.513495 CGTGTGAACTACTTGAATAGCTCTC 59.487 44.000 0.00 0.00 0.00 3.20
2817 3524 3.891049 ACTCTGACAGCAAGAAAAGGTT 58.109 40.909 0.00 0.00 0.00 3.50
2945 3659 3.190535 CAGGGAAGTCATTGTAAAACCGG 59.809 47.826 0.00 0.00 0.00 5.28
3156 3870 8.403306 ATTCTCCAGGAATTTGGTTCAGACCA 62.403 42.308 0.00 0.00 46.20 4.02
3343 4060 9.139174 AGTAAGTGTTCAAAACAAAACATTCAG 57.861 29.630 0.00 0.00 44.16 3.02
3358 4075 9.126151 TCCACATTTAATTTCAGTAAGTGTTCA 57.874 29.630 0.00 0.00 31.33 3.18
3359 4076 9.959749 TTCCACATTTAATTTCAGTAAGTGTTC 57.040 29.630 0.00 0.00 31.33 3.18
3365 4082 9.995003 AAAGCATTCCACATTTAATTTCAGTAA 57.005 25.926 0.00 0.00 0.00 2.24
3376 4093 9.553064 CTCTACTCTATAAAGCATTCCACATTT 57.447 33.333 0.00 0.00 0.00 2.32
4003 4722 2.622064 AAACTATGCCCTCCATCGTC 57.378 50.000 0.00 0.00 35.34 4.20
4005 4724 2.917933 TGAAAACTATGCCCTCCATCG 58.082 47.619 0.00 0.00 35.34 3.84
4060 4779 6.320418 CCATTCATCACATCTCCATCAAAAGA 59.680 38.462 0.00 0.00 0.00 2.52
4101 4820 0.737715 CTTGAAAGCCCCGAGACTCG 60.738 60.000 18.08 18.08 40.07 4.18
4349 5068 3.056107 TGACCAATAGAAGTCCAGGAACG 60.056 47.826 0.00 0.00 31.76 3.95
4393 5114 7.512130 TGCAAATCTAGGAACATGATATCTGT 58.488 34.615 0.00 3.39 0.00 3.41
4485 5206 5.391629 CGGTAGCATCGTATGAGCACTTATA 60.392 44.000 8.47 0.00 0.00 0.98
4486 5207 4.616143 CGGTAGCATCGTATGAGCACTTAT 60.616 45.833 8.47 0.00 0.00 1.73
4487 5208 3.304458 CGGTAGCATCGTATGAGCACTTA 60.304 47.826 8.47 0.00 0.00 2.24
4488 5209 2.543861 CGGTAGCATCGTATGAGCACTT 60.544 50.000 8.47 0.00 0.00 3.16
4500 5221 1.998315 CTGCAGCATATCGGTAGCATC 59.002 52.381 0.00 0.00 31.77 3.91
4654 5375 5.755849 CAGGAATAGGTGTCCAATAAGGTT 58.244 41.667 0.00 0.00 37.65 3.50
4725 5446 3.241784 GCGATCTCGACAAGTTCTGATTC 59.758 47.826 3.33 0.00 43.02 2.52
4726 5447 3.182967 GCGATCTCGACAAGTTCTGATT 58.817 45.455 3.33 0.00 43.02 2.57
4727 5448 2.792890 CGCGATCTCGACAAGTTCTGAT 60.793 50.000 0.00 0.00 43.02 2.90
4728 5449 1.465856 CGCGATCTCGACAAGTTCTGA 60.466 52.381 0.00 0.00 43.02 3.27
4729 5450 0.910513 CGCGATCTCGACAAGTTCTG 59.089 55.000 0.00 0.00 43.02 3.02
4730 5451 0.798771 GCGCGATCTCGACAAGTTCT 60.799 55.000 12.10 0.00 43.02 3.01
4749 5505 1.512734 GCAACCGAAATCGCTGCAG 60.513 57.895 10.11 10.11 42.42 4.41
4758 5514 3.634568 AACATTCGAATGCAACCGAAA 57.365 38.095 32.70 12.05 45.97 3.46
4763 5519 4.739716 ACACTCAAAACATTCGAATGCAAC 59.260 37.500 32.70 0.00 40.04 4.17
4771 5527 3.428870 AGCTCGTACACTCAAAACATTCG 59.571 43.478 0.00 0.00 0.00 3.34
4775 5531 2.869801 CCAAGCTCGTACACTCAAAACA 59.130 45.455 0.00 0.00 0.00 2.83
4851 5607 2.229062 GCAGTAGTGAGTAGTGACAGCA 59.771 50.000 6.32 0.00 34.31 4.41
4852 5608 2.229062 TGCAGTAGTGAGTAGTGACAGC 59.771 50.000 6.32 0.00 34.31 4.40
4854 5610 5.468540 AAATGCAGTAGTGAGTAGTGACA 57.531 39.130 6.32 4.46 34.31 3.58
4855 5611 6.622549 AGTAAATGCAGTAGTGAGTAGTGAC 58.377 40.000 6.32 0.00 34.31 3.67
4856 5612 6.403309 CGAGTAAATGCAGTAGTGAGTAGTGA 60.403 42.308 6.32 0.00 34.31 3.41
4858 5614 5.646793 TCGAGTAAATGCAGTAGTGAGTAGT 59.353 40.000 0.42 0.00 0.00 2.73
4859 5615 6.120378 TCGAGTAAATGCAGTAGTGAGTAG 57.880 41.667 0.42 0.00 0.00 2.57
4860 5616 5.646793 ACTCGAGTAAATGCAGTAGTGAGTA 59.353 40.000 18.46 0.00 31.72 2.59
4861 5617 4.459685 ACTCGAGTAAATGCAGTAGTGAGT 59.540 41.667 18.46 4.01 0.00 3.41
4862 5618 4.795795 CACTCGAGTAAATGCAGTAGTGAG 59.204 45.833 19.57 8.75 36.13 3.51
4874 5630 2.695359 GATGGGCAACACTCGAGTAAA 58.305 47.619 19.57 0.00 39.74 2.01
4932 5694 1.937108 GCTCCAAACTCTGACCTGACG 60.937 57.143 0.00 0.00 0.00 4.35
4933 5695 1.346068 AGCTCCAAACTCTGACCTGAC 59.654 52.381 0.00 0.00 0.00 3.51
4934 5696 1.722034 AGCTCCAAACTCTGACCTGA 58.278 50.000 0.00 0.00 0.00 3.86
4935 5697 3.244215 TGTTAGCTCCAAACTCTGACCTG 60.244 47.826 0.00 0.00 0.00 4.00
4936 5698 2.972713 TGTTAGCTCCAAACTCTGACCT 59.027 45.455 0.00 0.00 0.00 3.85
4937 5699 3.244249 ACTGTTAGCTCCAAACTCTGACC 60.244 47.826 0.00 0.00 0.00 4.02
5029 5794 5.510179 GCATTTTTGCTATGCACCCAGATAT 60.510 40.000 0.00 0.00 45.93 1.63
5030 5795 4.202141 GCATTTTTGCTATGCACCCAGATA 60.202 41.667 0.00 0.00 45.93 1.98
5032 5797 2.094078 GCATTTTTGCTATGCACCCAGA 60.094 45.455 0.00 0.00 45.93 3.86
5039 5804 2.199236 GGCTCTGCATTTTTGCTATGC 58.801 47.619 0.00 0.00 46.63 3.14
5064 5829 3.476295 TTTTCGCTATTCTGCAAGCAG 57.524 42.857 15.67 15.67 44.86 4.24
5092 5857 3.385111 ACCGACAAGCTCCCTTCTAATAG 59.615 47.826 0.00 0.00 0.00 1.73
5094 5859 2.188817 ACCGACAAGCTCCCTTCTAAT 58.811 47.619 0.00 0.00 0.00 1.73
5095 5860 1.640917 ACCGACAAGCTCCCTTCTAA 58.359 50.000 0.00 0.00 0.00 2.10
5096 5861 1.640917 AACCGACAAGCTCCCTTCTA 58.359 50.000 0.00 0.00 0.00 2.10
5097 5862 0.765510 AAACCGACAAGCTCCCTTCT 59.234 50.000 0.00 0.00 0.00 2.85
5291 6280 7.041030 TGTGACTTGAGTTGACTTTGTTGTTTA 60.041 33.333 0.00 0.00 0.00 2.01
5419 6411 4.725737 GCAACGCACGGGTATTTTTACTAG 60.726 45.833 0.00 0.00 0.00 2.57
5420 6412 3.124976 GCAACGCACGGGTATTTTTACTA 59.875 43.478 0.00 0.00 0.00 1.82
5421 6413 2.095617 GCAACGCACGGGTATTTTTACT 60.096 45.455 0.00 0.00 0.00 2.24
5422 6414 2.244251 GCAACGCACGGGTATTTTTAC 58.756 47.619 0.00 0.00 0.00 2.01
5423 6415 1.878088 TGCAACGCACGGGTATTTTTA 59.122 42.857 0.00 0.00 31.71 1.52
5424 6416 0.669077 TGCAACGCACGGGTATTTTT 59.331 45.000 0.00 0.00 31.71 1.94
5425 6417 0.669077 TTGCAACGCACGGGTATTTT 59.331 45.000 0.00 0.00 38.71 1.82
5426 6418 0.039888 GTTGCAACGCACGGGTATTT 60.040 50.000 14.90 0.00 38.71 1.40
5427 6419 1.577421 GTTGCAACGCACGGGTATT 59.423 52.632 14.90 0.00 38.71 1.89
5428 6420 2.673114 CGTTGCAACGCACGGGTAT 61.673 57.895 35.89 0.00 46.06 2.73
5429 6421 3.339464 CGTTGCAACGCACGGGTA 61.339 61.111 35.89 0.00 46.06 3.69
5438 6430 4.499037 ACTTATTTTCTCCCGTTGCAAC 57.501 40.909 19.89 19.89 0.00 4.17
5439 6431 6.440436 GTTAACTTATTTTCTCCCGTTGCAA 58.560 36.000 0.00 0.00 0.00 4.08
5440 6432 5.334260 CGTTAACTTATTTTCTCCCGTTGCA 60.334 40.000 3.71 0.00 0.00 4.08
5441 6433 5.084055 CGTTAACTTATTTTCTCCCGTTGC 58.916 41.667 3.71 0.00 0.00 4.17
5442 6434 6.075280 CACGTTAACTTATTTTCTCCCGTTG 58.925 40.000 3.71 0.00 0.00 4.10
5443 6435 5.334337 GCACGTTAACTTATTTTCTCCCGTT 60.334 40.000 3.71 0.00 0.00 4.44
5444 6436 4.152938 GCACGTTAACTTATTTTCTCCCGT 59.847 41.667 3.71 0.00 0.00 5.28
5445 6437 4.390909 AGCACGTTAACTTATTTTCTCCCG 59.609 41.667 3.71 0.00 0.00 5.14
5446 6438 5.874895 AGCACGTTAACTTATTTTCTCCC 57.125 39.130 3.71 0.00 0.00 4.30
5447 6439 6.013689 CGAAGCACGTTAACTTATTTTCTCC 58.986 40.000 3.71 0.00 37.22 3.71
5468 6460 5.866335 ATTGGTATTTGCTTCGTAACGAA 57.134 34.783 0.00 0.00 43.75 3.85
5469 6461 6.964741 TTATTGGTATTTGCTTCGTAACGA 57.035 33.333 0.00 0.00 0.00 3.85
5470 6462 7.375017 GGAATTATTGGTATTTGCTTCGTAACG 59.625 37.037 0.00 0.00 0.00 3.18
5471 6463 8.185505 TGGAATTATTGGTATTTGCTTCGTAAC 58.814 33.333 0.00 0.00 0.00 2.50
5472 6464 8.282455 TGGAATTATTGGTATTTGCTTCGTAA 57.718 30.769 0.00 0.00 0.00 3.18
5473 6465 7.867305 TGGAATTATTGGTATTTGCTTCGTA 57.133 32.000 0.00 0.00 0.00 3.43
5474 6466 6.767524 TGGAATTATTGGTATTTGCTTCGT 57.232 33.333 0.00 0.00 0.00 3.85
5475 6467 8.647143 AATTGGAATTATTGGTATTTGCTTCG 57.353 30.769 0.00 0.00 0.00 3.79
5478 6470 9.212593 ACCTAATTGGAATTATTGGTATTTGCT 57.787 29.630 0.00 0.00 39.71 3.91
5479 6471 9.830975 AACCTAATTGGAATTATTGGTATTTGC 57.169 29.630 4.37 0.00 39.71 3.68
5496 6488 5.200483 TCCTTTATCTGGCCAACCTAATTG 58.800 41.667 7.01 0.00 38.12 2.32
5497 6489 5.466127 TCCTTTATCTGGCCAACCTAATT 57.534 39.130 7.01 0.00 36.63 1.40
5498 6490 5.669798 ATCCTTTATCTGGCCAACCTAAT 57.330 39.130 7.01 0.00 36.63 1.73
5499 6491 6.159751 ACTTATCCTTTATCTGGCCAACCTAA 59.840 38.462 7.01 1.83 36.63 2.69
5500 6492 5.670361 ACTTATCCTTTATCTGGCCAACCTA 59.330 40.000 7.01 0.00 36.63 3.08
5501 6493 4.478686 ACTTATCCTTTATCTGGCCAACCT 59.521 41.667 7.01 0.00 36.63 3.50
5502 6494 4.793201 ACTTATCCTTTATCTGGCCAACC 58.207 43.478 7.01 0.00 0.00 3.77
5503 6495 6.377146 TCAAACTTATCCTTTATCTGGCCAAC 59.623 38.462 7.01 0.00 0.00 3.77
5504 6496 6.489603 TCAAACTTATCCTTTATCTGGCCAA 58.510 36.000 7.01 0.00 0.00 4.52
5505 6497 6.073447 TCAAACTTATCCTTTATCTGGCCA 57.927 37.500 4.71 4.71 0.00 5.36
5506 6498 6.772716 TCATCAAACTTATCCTTTATCTGGCC 59.227 38.462 0.00 0.00 0.00 5.36
5507 6499 7.807977 TCATCAAACTTATCCTTTATCTGGC 57.192 36.000 0.00 0.00 0.00 4.85
5514 6506 8.739972 GGTGTGTAATCATCAAACTTATCCTTT 58.260 33.333 0.00 0.00 0.00 3.11
5515 6507 7.888021 TGGTGTGTAATCATCAAACTTATCCTT 59.112 33.333 0.00 0.00 0.00 3.36
5516 6508 7.336931 GTGGTGTGTAATCATCAAACTTATCCT 59.663 37.037 0.00 0.00 29.89 3.24
5517 6509 7.120579 TGTGGTGTGTAATCATCAAACTTATCC 59.879 37.037 0.00 0.00 29.89 2.59
5518 6510 8.039603 TGTGGTGTGTAATCATCAAACTTATC 57.960 34.615 0.00 0.00 29.89 1.75
5519 6511 7.994425 TGTGGTGTGTAATCATCAAACTTAT 57.006 32.000 0.00 0.00 29.89 1.73
5520 6512 7.994425 ATGTGGTGTGTAATCATCAAACTTA 57.006 32.000 0.00 0.00 29.89 2.24
5521 6513 6.899393 ATGTGGTGTGTAATCATCAAACTT 57.101 33.333 0.00 0.00 29.89 2.66
5522 6514 6.899393 AATGTGGTGTGTAATCATCAAACT 57.101 33.333 0.00 0.00 29.89 2.66
5523 6515 7.945033 AAAATGTGGTGTGTAATCATCAAAC 57.055 32.000 0.00 0.00 29.89 2.93
5524 6516 7.380870 CGAAAAATGTGGTGTGTAATCATCAAA 59.619 33.333 0.00 0.00 29.89 2.69
5525 6517 6.860539 CGAAAAATGTGGTGTGTAATCATCAA 59.139 34.615 0.00 0.00 29.89 2.57
5526 6518 6.016693 ACGAAAAATGTGGTGTGTAATCATCA 60.017 34.615 0.00 0.00 0.00 3.07
5527 6519 6.378582 ACGAAAAATGTGGTGTGTAATCATC 58.621 36.000 0.00 0.00 0.00 2.92
5528 6520 6.206634 AGACGAAAAATGTGGTGTGTAATCAT 59.793 34.615 0.00 0.00 0.00 2.45
5529 6521 5.529430 AGACGAAAAATGTGGTGTGTAATCA 59.471 36.000 0.00 0.00 0.00 2.57
5530 6522 5.851177 CAGACGAAAAATGTGGTGTGTAATC 59.149 40.000 0.00 0.00 0.00 1.75
5531 6523 5.529430 TCAGACGAAAAATGTGGTGTGTAAT 59.471 36.000 0.00 0.00 0.00 1.89
5532 6524 4.876679 TCAGACGAAAAATGTGGTGTGTAA 59.123 37.500 0.00 0.00 0.00 2.41
5533 6525 4.271533 GTCAGACGAAAAATGTGGTGTGTA 59.728 41.667 0.00 0.00 0.00 2.90
5534 6526 3.064820 GTCAGACGAAAAATGTGGTGTGT 59.935 43.478 0.00 0.00 0.00 3.72
5535 6527 3.312421 AGTCAGACGAAAAATGTGGTGTG 59.688 43.478 0.00 0.00 0.00 3.82
5536 6528 3.541632 AGTCAGACGAAAAATGTGGTGT 58.458 40.909 0.00 0.00 0.00 4.16
5537 6529 3.559655 TGAGTCAGACGAAAAATGTGGTG 59.440 43.478 0.00 0.00 0.00 4.17
5538 6530 3.804036 TGAGTCAGACGAAAAATGTGGT 58.196 40.909 0.00 0.00 0.00 4.16
5539 6531 3.809832 ACTGAGTCAGACGAAAAATGTGG 59.190 43.478 26.86 0.00 35.18 4.17
5540 6532 6.712241 ATACTGAGTCAGACGAAAAATGTG 57.288 37.500 26.86 0.00 35.18 3.21
5541 6533 7.061905 CGTTATACTGAGTCAGACGAAAAATGT 59.938 37.037 26.86 3.42 32.36 2.71
5542 6534 7.061905 ACGTTATACTGAGTCAGACGAAAAATG 59.938 37.037 28.57 18.65 33.66 2.32
5543 6535 7.088905 ACGTTATACTGAGTCAGACGAAAAAT 58.911 34.615 28.57 11.04 33.66 1.82
5544 6536 6.441274 ACGTTATACTGAGTCAGACGAAAAA 58.559 36.000 28.57 12.52 33.66 1.94
5545 6537 6.005583 ACGTTATACTGAGTCAGACGAAAA 57.994 37.500 28.57 13.61 33.66 2.29
5546 6538 5.618056 ACGTTATACTGAGTCAGACGAAA 57.382 39.130 28.57 14.99 33.66 3.46
5547 6539 5.049198 ACAACGTTATACTGAGTCAGACGAA 60.049 40.000 28.57 16.28 33.66 3.85
5548 6540 4.453478 ACAACGTTATACTGAGTCAGACGA 59.547 41.667 28.57 15.03 33.66 4.20
5549 6541 4.720090 ACAACGTTATACTGAGTCAGACG 58.280 43.478 26.86 24.69 35.26 4.18
5550 6542 7.069852 TCTACAACGTTATACTGAGTCAGAC 57.930 40.000 26.86 12.83 35.18 3.51
5551 6543 7.551617 TGATCTACAACGTTATACTGAGTCAGA 59.448 37.037 26.86 10.63 35.18 3.27
5552 6544 7.694886 TGATCTACAACGTTATACTGAGTCAG 58.305 38.462 18.83 18.83 37.52 3.51
5553 6545 7.551617 TCTGATCTACAACGTTATACTGAGTCA 59.448 37.037 0.00 0.00 0.00 3.41
5554 6546 7.917597 TCTGATCTACAACGTTATACTGAGTC 58.082 38.462 0.00 0.00 0.00 3.36
5555 6547 7.860918 TCTGATCTACAACGTTATACTGAGT 57.139 36.000 0.00 0.00 0.00 3.41
5556 6548 7.742525 CGATCTGATCTACAACGTTATACTGAG 59.257 40.741 15.16 0.00 0.00 3.35
5557 6549 7.226128 ACGATCTGATCTACAACGTTATACTGA 59.774 37.037 15.16 0.00 32.57 3.41
5558 6550 7.353497 ACGATCTGATCTACAACGTTATACTG 58.647 38.462 15.16 0.00 32.57 2.74
5559 6551 7.493743 ACGATCTGATCTACAACGTTATACT 57.506 36.000 15.16 0.00 32.57 2.12
5560 6552 6.515678 CGACGATCTGATCTACAACGTTATAC 59.484 42.308 15.16 0.00 34.89 1.47
5561 6553 6.421801 TCGACGATCTGATCTACAACGTTATA 59.578 38.462 15.16 0.00 34.89 0.98
5562 6554 5.235831 TCGACGATCTGATCTACAACGTTAT 59.764 40.000 15.16 0.00 34.89 1.89
5563 6555 4.567959 TCGACGATCTGATCTACAACGTTA 59.432 41.667 15.16 0.00 34.89 3.18
5564 6556 3.373130 TCGACGATCTGATCTACAACGTT 59.627 43.478 15.16 0.00 34.89 3.99
5565 6557 2.934553 TCGACGATCTGATCTACAACGT 59.065 45.455 15.16 7.68 36.34 3.99
5566 6558 3.587403 TCGACGATCTGATCTACAACG 57.413 47.619 15.16 12.18 0.00 4.10
5567 6559 3.666334 GCATCGACGATCTGATCTACAAC 59.334 47.826 15.16 2.34 0.00 3.32
5568 6560 3.304726 GGCATCGACGATCTGATCTACAA 60.305 47.826 15.16 0.03 0.00 2.41
5569 6561 2.226674 GGCATCGACGATCTGATCTACA 59.773 50.000 15.16 0.00 0.00 2.74
5570 6562 2.226674 TGGCATCGACGATCTGATCTAC 59.773 50.000 15.16 8.12 0.00 2.59
5571 6563 2.485814 CTGGCATCGACGATCTGATCTA 59.514 50.000 15.16 0.00 0.00 1.98
5572 6564 1.269174 CTGGCATCGACGATCTGATCT 59.731 52.381 15.16 3.11 0.00 2.75
5573 6565 1.668337 CCTGGCATCGACGATCTGATC 60.668 57.143 7.54 7.60 0.00 2.92
5574 6566 0.316522 CCTGGCATCGACGATCTGAT 59.683 55.000 7.54 0.00 0.00 2.90
5575 6567 1.037579 ACCTGGCATCGACGATCTGA 61.038 55.000 7.54 0.00 0.00 3.27
5576 6568 0.873312 CACCTGGCATCGACGATCTG 60.873 60.000 7.54 0.09 0.00 2.90
5577 6569 1.037579 TCACCTGGCATCGACGATCT 61.038 55.000 7.54 0.00 0.00 2.75
5578 6570 0.179111 TTCACCTGGCATCGACGATC 60.179 55.000 7.54 3.21 0.00 3.69
5579 6571 0.249120 TTTCACCTGGCATCGACGAT 59.751 50.000 4.05 4.05 0.00 3.73
5580 6572 0.034198 TTTTCACCTGGCATCGACGA 59.966 50.000 0.00 0.00 0.00 4.20
5581 6573 0.871722 TTTTTCACCTGGCATCGACG 59.128 50.000 0.00 0.00 0.00 5.12
5602 6594 9.826574 GACTACAATTAATAATCTGGTGTGGTA 57.173 33.333 5.08 0.00 30.63 3.25
5603 6595 8.548877 AGACTACAATTAATAATCTGGTGTGGT 58.451 33.333 4.84 4.84 32.77 4.16
5604 6596 8.964476 AGACTACAATTAATAATCTGGTGTGG 57.036 34.615 0.00 0.00 0.00 4.17
5605 6597 9.823647 AGAGACTACAATTAATAATCTGGTGTG 57.176 33.333 0.00 0.00 0.00 3.82
5632 6624 9.734620 GCATGCTCAACATTTTTATTGTCTATA 57.265 29.630 11.37 0.00 36.64 1.31
5633 6625 8.252417 TGCATGCTCAACATTTTTATTGTCTAT 58.748 29.630 20.33 0.00 36.64 1.98
5634 6626 7.600960 TGCATGCTCAACATTTTTATTGTCTA 58.399 30.769 20.33 0.00 36.64 2.59
5635 6627 6.457355 TGCATGCTCAACATTTTTATTGTCT 58.543 32.000 20.33 0.00 36.64 3.41
5636 6628 6.709145 TGCATGCTCAACATTTTTATTGTC 57.291 33.333 20.33 0.00 36.64 3.18
5637 6629 7.675962 ATTGCATGCTCAACATTTTTATTGT 57.324 28.000 20.33 0.00 36.64 2.71
5638 6630 8.875803 AGTATTGCATGCTCAACATTTTTATTG 58.124 29.630 20.33 0.00 36.64 1.90
5639 6631 9.439500 AAGTATTGCATGCTCAACATTTTTATT 57.561 25.926 20.33 0.29 36.64 1.40
5640 6632 9.439500 AAAGTATTGCATGCTCAACATTTTTAT 57.561 25.926 20.33 0.00 36.64 1.40
5641 6633 8.830201 AAAGTATTGCATGCTCAACATTTTTA 57.170 26.923 20.33 0.00 36.64 1.52
5642 6634 7.441760 TGAAAGTATTGCATGCTCAACATTTTT 59.558 29.630 20.33 9.95 36.64 1.94
5643 6635 6.930164 TGAAAGTATTGCATGCTCAACATTTT 59.070 30.769 20.33 4.29 36.64 1.82
5644 6636 6.457355 TGAAAGTATTGCATGCTCAACATTT 58.543 32.000 20.33 12.34 36.64 2.32
5645 6637 6.028146 TGAAAGTATTGCATGCTCAACATT 57.972 33.333 20.33 12.32 36.64 2.71
5646 6638 5.648178 TGAAAGTATTGCATGCTCAACAT 57.352 34.783 20.33 4.12 40.66 2.71
5647 6639 5.450592 TTGAAAGTATTGCATGCTCAACA 57.549 34.783 20.33 5.68 0.00 3.33
5648 6640 4.860907 CCTTGAAAGTATTGCATGCTCAAC 59.139 41.667 20.33 13.33 0.00 3.18
5649 6641 4.523943 ACCTTGAAAGTATTGCATGCTCAA 59.476 37.500 20.33 16.30 0.00 3.02
5650 6642 4.081406 ACCTTGAAAGTATTGCATGCTCA 58.919 39.130 20.33 9.38 0.00 4.26
5651 6643 4.708726 ACCTTGAAAGTATTGCATGCTC 57.291 40.909 20.33 6.57 0.00 4.26
5652 6644 6.780457 AATACCTTGAAAGTATTGCATGCT 57.220 33.333 20.33 1.26 38.63 3.79
5653 6645 7.832503 AAAATACCTTGAAAGTATTGCATGC 57.167 32.000 11.82 11.82 39.69 4.06
5655 6647 9.869757 GGTAAAAATACCTTGAAAGTATTGCAT 57.130 29.630 0.32 0.00 39.69 3.96
5670 6662 5.123344 ACAACTGCATCGAGGTAAAAATACC 59.877 40.000 0.00 0.00 40.38 2.73
5671 6663 6.178239 ACAACTGCATCGAGGTAAAAATAC 57.822 37.500 0.00 0.00 0.00 1.89
5672 6664 6.205853 ACAACAACTGCATCGAGGTAAAAATA 59.794 34.615 0.00 0.00 0.00 1.40
5673 6665 5.009610 ACAACAACTGCATCGAGGTAAAAAT 59.990 36.000 0.00 0.00 0.00 1.82
5674 6666 4.336993 ACAACAACTGCATCGAGGTAAAAA 59.663 37.500 0.00 0.00 0.00 1.94
5675 6667 3.880490 ACAACAACTGCATCGAGGTAAAA 59.120 39.130 0.00 0.00 0.00 1.52
5676 6668 3.472652 ACAACAACTGCATCGAGGTAAA 58.527 40.909 0.00 0.00 0.00 2.01
5677 6669 3.120321 ACAACAACTGCATCGAGGTAA 57.880 42.857 0.00 0.00 0.00 2.85
5678 6670 2.805671 CAACAACAACTGCATCGAGGTA 59.194 45.455 0.00 0.00 0.00 3.08
5679 6671 1.603802 CAACAACAACTGCATCGAGGT 59.396 47.619 0.00 0.00 0.00 3.85
5680 6672 1.603802 ACAACAACAACTGCATCGAGG 59.396 47.619 0.00 0.00 0.00 4.63
5681 6673 3.291585 GAACAACAACAACTGCATCGAG 58.708 45.455 0.00 0.00 0.00 4.04
5682 6674 2.032799 GGAACAACAACAACTGCATCGA 59.967 45.455 0.00 0.00 0.00 3.59
5683 6675 2.033299 AGGAACAACAACAACTGCATCG 59.967 45.455 0.00 0.00 0.00 3.84
5684 6676 3.550842 GGAGGAACAACAACAACTGCATC 60.551 47.826 0.00 0.00 0.00 3.91
5685 6677 2.362077 GGAGGAACAACAACAACTGCAT 59.638 45.455 0.00 0.00 0.00 3.96
5686 6678 1.748493 GGAGGAACAACAACAACTGCA 59.252 47.619 0.00 0.00 0.00 4.41
5687 6679 1.748493 TGGAGGAACAACAACAACTGC 59.252 47.619 0.00 0.00 0.00 4.40
5688 6680 4.320494 GCTATGGAGGAACAACAACAACTG 60.320 45.833 0.00 0.00 0.00 3.16
5689 6681 3.821033 GCTATGGAGGAACAACAACAACT 59.179 43.478 0.00 0.00 0.00 3.16
5690 6682 3.568007 TGCTATGGAGGAACAACAACAAC 59.432 43.478 0.00 0.00 0.00 3.32
5691 6683 3.826524 TGCTATGGAGGAACAACAACAA 58.173 40.909 0.00 0.00 0.00 2.83
5692 6684 3.500448 TGCTATGGAGGAACAACAACA 57.500 42.857 0.00 0.00 0.00 3.33
5693 6685 4.009675 TGATGCTATGGAGGAACAACAAC 58.990 43.478 0.00 0.00 0.00 3.32
5694 6686 4.299586 TGATGCTATGGAGGAACAACAA 57.700 40.909 0.00 0.00 0.00 2.83
5695 6687 3.998913 TGATGCTATGGAGGAACAACA 57.001 42.857 0.00 0.00 0.00 3.33
5696 6688 4.641989 ACATTGATGCTATGGAGGAACAAC 59.358 41.667 0.00 0.00 38.35 3.32
5697 6689 4.858850 ACATTGATGCTATGGAGGAACAA 58.141 39.130 0.00 0.00 39.52 2.83
5698 6690 4.508551 ACATTGATGCTATGGAGGAACA 57.491 40.909 0.00 0.00 0.00 3.18
5699 6691 5.450965 CCAAACATTGATGCTATGGAGGAAC 60.451 44.000 0.00 0.00 32.83 3.62
5700 6692 4.646040 CCAAACATTGATGCTATGGAGGAA 59.354 41.667 0.00 0.00 32.83 3.36
5701 6693 4.209538 CCAAACATTGATGCTATGGAGGA 58.790 43.478 0.00 0.00 32.83 3.71
5702 6694 3.319972 CCCAAACATTGATGCTATGGAGG 59.680 47.826 10.23 0.00 32.83 4.30
5703 6695 4.579454 CCCAAACATTGATGCTATGGAG 57.421 45.455 10.23 1.03 32.83 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.